RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5364
(78 letters)
>d2di9a1 b.1.18.10 (A:8-125) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 118
Score = 69.2 bits (169), Expect = 8e-18
Identities = 30/62 (48%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGP 75
G VPGSP+TV S PD SKV+ +GPG+E G+ + F DT+GAG G L + V GP
Sbjct: 6 GHPVPGSPYTVEASLPPDPSKVKAHGPGLEGGL-VGKPAEFTIDTKGAGTGGLGLTVEGP 64
Query: 76 KG 77
Sbjct: 65 CE 66
Score = 33.4 bits (76), Expect = 7e-04
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
V +PGSPF + D S
Sbjct: 99 EVHIPGSPFKADIEMPFDPS 118
>d2diba1 b.1.18.10 (A:8-122) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 115
Score = 59.2 bits (143), Expect = 7e-14
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 22 SPFTVRVSGAPDASKVRVYGPGIE-HGVLATFQSRFICDTR---GAGAGQLTVRVRGPKG 77
P V+V A D S+++V+GPGIE V + F D+R G + + P G
Sbjct: 2 FPARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIANPSG 61
Score = 31.8 bits (72), Expect = 0.002
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
V +P SPF V V+ S
Sbjct: 96 DVPIPNSPFKVAVTEGCQPS 115
>d2dj4a1 b.1.18.10 (A:8-108) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 101
Score = 55.7 bits (134), Expect = 1e-12
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
D SKV++ GPG+ GV A F D+ AG L VRV GP+G
Sbjct: 3 DPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRG 47
Score = 33.7 bits (77), Expect = 4e-04
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
++P SPF V+V DAS
Sbjct: 82 DEEIPRSPFKVKVLPTYDAS 101
>d2d7ma1 b.1.18.10 (A:8-109) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 55.4 bits (133), Expect = 2e-12
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 31 APDASKVRVYGPGIEH-GVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
A DASKVR GPG+ G+ A+ F D R AG G LTV++ P+G
Sbjct: 1 AHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEG 48
Score = 34.9 bits (80), Expect = 1e-04
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
G ++P SPF + DAS
Sbjct: 83 GDEIPYSPFRIHALPTGDAS 102
>d2dmba1 b.1.18.10 (A:8-118) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 111
Score = 52.7 bits (126), Expect = 2e-11
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
DASK GPGI V + F+ D + AG G++T V P G
Sbjct: 3 DASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDG 47
Score = 29.2 bits (65), Expect = 0.023
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVRVYGPGI 44
GVD+P SPFTV + D V +
Sbjct: 82 GVDIPNSPFTVMAT---DGEVTAVEEAPV 107
>d2nqca1 b.1.18.10 (A:2482-2578) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 50.3 bits (120), Expect = 1e-10
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 31 APDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
A D V YGPG+E G S FI +T AG+G L+V + GP
Sbjct: 1 AGDPGLVSAYGPGLEGGTTGV-SSEFIVNTLNAGSGALSVTIDGPSK 46
Score = 26.0 bits (57), Expect = 0.27
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 18 DVPGSPFTVRVSG 30
+ GSPF +V+G
Sbjct: 81 HIVGSPFKAKVTG 93
>d2dica1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 49.2 bits (117), Expect = 4e-10
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
S+V+ GPG++ + F TRGAG G L + V GP
Sbjct: 3 QPSRVQAQGPGLKEAF-TNKPNVFTVVTRGAGIGGLGITVEGPSE 46
Score = 31.4 bits (71), Expect = 0.002
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
G +PGSPF V V D S
Sbjct: 79 GAHIPGSPFRVPVKDVVDPS 98
>d2w0pa1 b.1.18.10 (A:2237-2328) Filamin a {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 48.8 bits (116), Expect = 5e-10
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 34 ASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
A KVR GPG+E A + F TR AGAG L + V GP
Sbjct: 2 AHKVRAGGPGLERAE-AGVPAEFSIWTREAGAGGLAIAVEGPSK 44
Score = 27.2 bits (60), Expect = 0.10
Identities = 6/15 (40%), Positives = 8/15 (53%)
Query: 16 GVDVPGSPFTVRVSG 30
+P SPF V V+
Sbjct: 77 EEHIPDSPFVVPVAS 91
>d2di8a1 b.1.18.10 (A:8-105) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 47.7 bits (113), Expect = 2e-09
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKGF 78
DA + +VYG G+ G S FI DTR AG G +++ V GP
Sbjct: 3 DARRAKVYGRGLSEGRTFE-MSDFIVDTRDAGYGGISLAVEGPSKV 47
Score = 29.2 bits (65), Expect = 0.019
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 16 GVDVPGSPFTVRVSGAPDASKVR 38
VPGSPFTV++S +V+
Sbjct: 79 DEHVPGSPFTVKIS---GEGRVK 98
>d2dmca1 b.1.18.10 (A:8-110) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 47.2 bits (112), Expect = 2e-09
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 12/60 (20%)
Query: 19 VPGSPFTVRVSGA-PDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
+PGSPFT +++ S+V++ + F+ D LT ++ P G
Sbjct: 1 IPGSPFTAKITDDSRRCSQVKLGSA-----------ADFLLDISETDLSSLTASIKAPSG 49
Score = 26.8 bits (59), Expect = 0.14
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 16 GVDVPGSPFTVRVSGA 31
G V SP ++ V +
Sbjct: 84 GNHVANSPVSIMVVQS 99
>d2diaa1 b.1.18.10 (A:8-107) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 46.9 bits (111), Expect = 3e-09
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
D SKV GPG+EHG + D AG G L + G
Sbjct: 3 DPSKVVASGPGLEHGKVGE-AGLLSVDCSEAGPGALGLEAVSDSG 46
Score = 34.2 bits (78), Expect = 2e-04
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 16 GVDVPGSPFTVRVSGAPDAS 35
G VP P V+V A D S
Sbjct: 81 GELVPHFPARVKVEPAVDTS 100
>d2bp3a1 b.1.18.10 (A:1863-1954) Filamin a {Human (Homo sapiens)
[TaxId: 9606]}
Length = 92
Score = 46.1 bits (109), Expect = 5e-09
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
+ V YGPG+ HGV+ + F +T+ AG G L++ + GP
Sbjct: 2 NCGHVTAYGPGLTHGVVNK-PATFTVNTKDAGEGGLSLAIEGPSK 45
Score = 29.9 bits (67), Expect = 0.009
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 16 GVDVPGSPFTVRVSG 30
VPGSPFT RV+G
Sbjct: 78 EQHVPGSPFTARVTG 92
>d1v05a_ b.1.18.10 (A:) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 96
Score = 46.1 bits (109), Expect = 7e-09
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 29 SGAPDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
+ DASKV GPG+ + ++ F D AG + V V GPK
Sbjct: 1 AMGSDASKVVTRGPGLSQAFVGQ-KNSFTVDCSKAGTNMMMVGVHGPKT 48
Score = 26.5 bits (58), Expect = 0.22
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 16 GVDVPGSPFTVRV 28
VPGSPF V+V
Sbjct: 83 DESVPGSPFKVKV 95
>d2d7pa1 b.1.18.10 (A:8-106) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 99
Score = 40.7 bits (95), Expect = 8e-07
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 33 DASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTVRVRGPKG 77
DA ++ V E G+ + F G G + RV P G
Sbjct: 3 DARRLTVTSLQ-ETGLKVNQPASFAVQLNG-ARGVIDARVHTPSG 45
Score = 27.2 bits (60), Expect = 0.11
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 16 GVDVPGSPFTVRVSGAPDA 34
G +PGSPF +RV A
Sbjct: 80 GAHIPGSPFKIRVGEQSQA 98
Score = 23.8 bits (51), Expect = 1.9
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 5/73 (6%)
Query: 6 RRINLRTEGEGVDVPGSP--FTVRVSGAPDASKVRVYGPG---IEHGVLATFQSRFICDT 60
RR+ + + E P F V+++GA RV+ P E V +
Sbjct: 5 RRLTVTSLQETGLKVNQPASFAVQLNGARGVIDARVHTPSGAVEECYVSELDSDKHTIRF 64
Query: 61 RGAGAGQLTVRVR 73
G ++ V+
Sbjct: 65 IPHENGVHSIDVK 77
>d1wlha1 b.1.18.10 (A:547-647) F-actin cross-linking gelation
factor (ABP-120) repeats {Dictyostelium discoideum
[TaxId: 44689]}
Length = 101
Score = 36.6 bits (84), Expect = 3e-05
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 31 APDASKVRVYGPGIEHGVLATFQSRFICDTRGAGAGQLTV 70
A D K GPG++ G S+F T
Sbjct: 2 AADPEKSYAEGPGLDGGE-CFQPSKFKIHAVDPDGVHRTD 40
Score = 25.8 bits (56), Expect = 0.33
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 16 GVDVPGSPFTVRV 28
G +V G P TV V
Sbjct: 87 GDNVNGFPKTVTV 99
>d1qfha1 b.1.18.10 (A:646-749) F-actin cross-linking gelation
factor (ABP-120) repeats {Dictyostelium discoideum
[TaxId: 44689]}
Length = 104
Score = 34.6 bits (79), Expect = 2e-04
Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 8/54 (14%)
Query: 31 APDASKVRVYGPGIEHGVLATFQSRFICDTR-------GAGAGQLTVRVRGPKG 77
AP A G G+ + F G V + GP G
Sbjct: 3 APSAEHSYAEGEGLVKVF-DNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDG 55
Score = 26.5 bits (58), Expect = 0.20
Identities = 3/13 (23%), Positives = 5/13 (38%)
Query: 16 GVDVPGSPFTVRV 28
G + P V+
Sbjct: 90 GNPIKNMPIDVKC 102
>d1qfha2 b.1.18.10 (A:750-857) F-actin cross-linking gelation factor
(ABP-120) repeats {Dictyostelium discoideum [TaxId:
44689]}
Length = 108
Score = 31.9 bits (72), Expect = 0.002
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 16 GVDVPGSPFTVRVSG-APDASKVRVYGP 42
G + GSPF + +V+ +
Sbjct: 76 GKHIEGSPFKQVLGNPGKKNPEVKSFTT 103
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 26.7 bits (59), Expect = 0.13
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 16 GVDVPGSPFTVRVSGAP 32
G +PGSP V
Sbjct: 61 GNHIPGSPLQFYVDAIN 77
Score = 23.2 bits (50), Expect = 2.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 62 GAGAGQLTVRVRGPKG 77
G+LT VR P G
Sbjct: 11 AVQKGELTGEVRMPSG 26
>d2j3sa2 b.1.18.10 (A:2149-2236) Filamin b {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 26.8 bits (59), Expect = 0.16
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 16 GVDVPGSPFTVRVSGAPD 33
G VPGSPF V +
Sbjct: 70 GQHVPGSPFQFTVGPLGE 87
Score = 26.4 bits (58), Expect = 0.20
Identities = 4/25 (16%), Positives = 6/25 (24%)
Query: 53 QSRFICDTRGAGAGQLTVRVRGPKG 77
+T +V P G
Sbjct: 11 HCDLSLKIPEISIQDMTAQVTSPSG 35
>d1r89a3 d.58.16.2 (A:258-437) tRNA nucleotidyltransferase,
C-terminal domain {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 180
Score = 24.3 bits (53), Expect = 1.7
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 20 PGSPFTVRVSGAPDASKVRVYGPGIEHGVLATFQSR 55
G F + S+ R + P IE+G F+ R
Sbjct: 88 MGPQFEDERNVKKFLSRNRAFRPFIENGRWWAFEMR 123
>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3
repeats {Drosophila melanogaster [TaxId: 7227]}
Length = 100
Score = 22.3 bits (46), Expect = 8.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 18 DVPGSPFTVRVSGAPDASKVRVYGPGIEH 46
DVP +P ++ D +++ G
Sbjct: 4 DVPNAPKLTGITCQADKAEIHWEQQGDNR 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.423
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 293,638
Number of extensions: 11453
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 44
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)