Query psy5367
Match_columns 201
No_of_seqs 227 out of 759
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:47:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 4.6E-40 9.9E-45 264.1 8.4 131 6-148 4-136 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 4.2E-38 9E-43 264.7 4.5 131 7-149 1-135 (244)
3 KOG0841|consensus 100.0 5.9E-36 1.3E-40 246.7 6.7 134 6-151 1-137 (247)
4 PF00244 14-3-3: 14-3-3 protei 100.0 3.1E-33 6.7E-38 234.9 10.4 130 7-148 1-132 (236)
5 smart00557 IG_FLMN Filamin-typ 99.8 2.2E-20 4.7E-25 135.6 11.1 79 122-200 1-80 (93)
6 PF00630 Filamin: Filamin/ABP2 99.8 1.4E-18 3.1E-23 126.7 10.5 81 120-200 2-94 (101)
7 KOG0518|consensus 99.7 3.6E-18 7.9E-23 163.2 9.8 99 101-200 736-835 (1113)
8 KOG0518|consensus 99.3 3.2E-12 7E-17 123.0 8.9 98 101-200 243-341 (1113)
9 PF06312 Neurexophilin: Neurex 96.0 0.028 6.1E-07 46.9 6.9 46 151-196 68-115 (219)
10 PF01835 A2M_N: MG2 domain; I 91.3 2 4.4E-05 30.5 8.1 61 137-197 13-86 (99)
11 PF13620 CarboxypepD_reg: Carb 90.2 1.5 3.3E-05 29.7 6.4 43 155-199 17-59 (82)
12 PF02369 Big_1: Bacterial Ig-l 90.1 1.9 4.1E-05 31.2 7.1 31 169-199 61-91 (100)
13 KOG3287|consensus 90.0 2.1 4.6E-05 35.7 8.0 74 110-194 34-110 (236)
14 PF13473 Cupredoxin_1: Cupredo 89.4 1.4 3E-05 31.8 6.0 65 120-198 32-96 (104)
15 smart00557 IG_FLMN Filamin-typ 89.1 0.21 4.6E-06 35.6 1.4 17 101-117 75-91 (93)
16 PF07719 TPR_2: Tetratricopept 88.5 1.1 2.4E-05 24.9 3.9 31 9-39 3-33 (34)
17 PF13115 YtkA: YtkA-like 87.4 5.8 0.00012 27.4 7.9 42 153-194 38-85 (86)
18 PF13860 FlgD_ig: FlgD Ig-like 87.4 6.3 0.00014 27.2 8.0 47 151-197 23-78 (81)
19 PF13174 TPR_6: Tetratricopept 87.3 1.5 3.3E-05 24.0 4.0 30 9-38 2-31 (33)
20 PF00017 SH2: SH2 domain; Int 86.4 1.3 2.8E-05 29.9 4.0 27 173-199 19-45 (77)
21 PF13181 TPR_8: Tetratricopept 85.7 1.4 3E-05 24.6 3.3 30 9-38 3-32 (34)
22 KOG1428|consensus 84.3 0.99 2.1E-05 47.2 3.4 34 167-200 2097-2130(3738)
23 PF07495 Y_Y_Y: Y_Y_Y domain; 83.7 1.4 3E-05 28.8 3.0 20 179-198 30-49 (66)
24 PF10670 DUF4198: Domain of un 83.6 15 0.00033 29.3 9.8 60 137-198 149-213 (215)
25 PF06832 BiPBP_C: Penicillin-B 83.2 6.7 0.00014 27.4 6.6 22 173-194 56-77 (89)
26 PF07705 CARDB: CARDB; InterP 82.5 5.3 0.00011 27.7 5.9 63 137-199 17-86 (101)
27 PF00515 TPR_1: Tetratricopept 82.3 3.3 7.2E-05 23.0 3.9 30 10-39 4-33 (34)
28 PF13428 TPR_14: Tetratricopep 81.8 3.6 7.9E-05 24.7 4.2 31 9-39 3-33 (44)
29 smart00252 SH2 Src homology 2 81.6 1.7 3.8E-05 29.8 3.0 29 171-199 18-46 (84)
30 PF04151 PPC: Bacterial pre-pe 81.0 13 0.00029 24.5 7.6 52 143-195 15-69 (70)
31 PF05751 FixH: FixH; InterPro 80.8 16 0.00035 27.7 8.5 46 152-197 85-133 (146)
32 PF11896 DUF3416: Domain of un 77.8 16 0.00035 29.7 7.9 60 136-195 24-87 (187)
33 cd00173 SH2 Src homology 2 dom 76.3 4.3 9.3E-05 28.1 3.7 29 171-199 17-45 (94)
34 KOG4637|consensus 75.7 2.4 5.3E-05 38.1 2.7 35 166-200 35-69 (464)
35 KOG2996|consensus 75.7 2 4.3E-05 40.9 2.2 33 168-200 699-731 (865)
36 PF05404 TRAP-delta: Transloco 74.8 11 0.00025 30.2 6.1 52 139-194 43-100 (167)
37 KOG1691|consensus 74.5 13 0.00029 30.8 6.6 62 129-192 36-97 (210)
38 smart00634 BID_1 Bacterial Ig- 73.9 28 0.0006 24.4 8.9 30 170-199 56-85 (92)
39 cd02858 Esterase_N_term Estera 73.0 28 0.00062 24.1 8.1 56 140-198 7-62 (85)
40 PF13860 FlgD_ig: FlgD Ig-like 72.1 26 0.00055 24.1 6.8 47 151-199 10-59 (81)
41 PF13176 TPR_7: Tetratricopept 71.9 7.7 0.00017 22.3 3.5 26 10-35 2-27 (36)
42 TIGR00868 hCaCC calcium-activa 71.7 12 0.00026 37.5 6.6 46 154-199 628-683 (863)
43 PF13754 Big_3_4: Bacterial Ig 71.3 9 0.00019 24.5 4.0 29 171-199 7-35 (54)
44 smart00028 TPR Tetratricopepti 70.5 11 0.00024 18.8 3.8 29 10-38 4-32 (34)
45 PRK06655 flgD flagellar basal 70.2 26 0.00056 29.4 7.5 55 140-195 114-177 (225)
46 PF13715 DUF4480: Domain of un 70.0 32 0.00069 23.4 7.1 26 171-199 30-55 (88)
47 PRK14081 triple tyrosine motif 69.5 26 0.00056 34.1 8.2 61 134-198 397-458 (667)
48 cd02682 MIT_AAA_Arch MIT: doma 67.8 35 0.00075 23.7 6.6 27 9-35 8-34 (75)
49 PRK12812 flgD flagellar basal 67.1 32 0.00069 29.5 7.6 56 140-196 129-193 (259)
50 KOG1692|consensus 66.7 32 0.0007 28.3 7.1 48 109-165 18-67 (201)
51 PF13432 TPR_16: Tetratricopep 66.3 12 0.00026 23.8 3.9 31 8-38 32-62 (65)
52 PF13432 TPR_16: Tetratricopep 66.2 15 0.00031 23.4 4.3 28 12-39 2-29 (65)
53 PRK09619 flgD flagellar basal 65.1 34 0.00073 28.5 7.2 43 152-195 122-170 (218)
54 PF13414 TPR_11: TPR repeat; P 64.3 14 0.0003 23.7 4.0 32 8-39 4-35 (69)
55 KOG1693|consensus 63.9 51 0.0011 27.3 7.8 77 109-193 21-97 (209)
56 PRK12813 flgD flagellar basal 61.5 53 0.0011 27.5 7.7 55 140-196 112-173 (223)
57 KOG4088|consensus 60.3 49 0.0011 25.9 6.7 57 140-199 44-103 (167)
58 PF09315 DUF1973: Domain of un 59.1 47 0.001 26.8 6.9 58 136-195 26-85 (179)
59 PRK14081 triple tyrosine motif 58.8 45 0.00098 32.5 7.7 62 134-198 493-554 (667)
60 KOG1953|consensus 58.2 2.2E+02 0.0048 29.4 12.3 50 45-96 566-619 (1235)
61 TIGR03096 nitroso_cyanin nitro 58.1 57 0.0012 25.2 6.9 22 174-195 98-119 (135)
62 PF12988 DUF3872: Domain of un 58.1 69 0.0015 24.9 7.2 44 151-198 76-121 (137)
63 PF10083 DUF2321: Uncharacteri 58.1 13 0.00029 29.4 3.4 33 25-57 83-115 (158)
64 cd02656 MIT MIT: domain contai 55.5 48 0.001 22.2 5.5 27 9-35 8-34 (75)
65 PF00801 PKD: PKD domain; Int 54.9 20 0.00044 23.4 3.5 21 179-199 43-63 (69)
66 cd02683 MIT_1 MIT: domain cont 54.7 68 0.0015 22.1 6.5 28 8-35 7-34 (77)
67 smart00745 MIT Microtubule Int 54.3 41 0.0009 22.6 5.1 28 8-35 9-36 (77)
68 PF01105 EMP24_GP25L: emp24/gp 53.2 4.5 9.7E-05 31.3 0.0 43 152-195 36-80 (183)
69 PF00887 ACBP: Acyl CoA bindin 53.1 39 0.00084 23.6 4.9 35 21-56 3-37 (87)
70 PF13371 TPR_9: Tetratricopept 53.0 27 0.00058 22.5 3.9 26 14-39 2-27 (73)
71 PF07563 DUF1541: Protein of u 52.8 28 0.0006 22.6 3.6 20 177-196 31-50 (53)
72 TIGR02756 TraK_Ftype type-F co 51.9 1.2E+02 0.0026 25.4 8.4 78 108-189 26-107 (232)
73 PF13414 TPR_11: TPR repeat; P 51.1 26 0.00057 22.4 3.5 30 9-38 39-69 (69)
74 PF05010 TACC: Transforming ac 50.6 86 0.0019 26.0 7.2 81 12-103 123-203 (207)
75 PF07523 Big_3: Bacterial Ig-l 49.9 20 0.00044 23.6 2.9 24 176-199 36-59 (67)
76 PF13371 TPR_9: Tetratricopept 49.6 32 0.00069 22.2 3.8 30 9-38 31-60 (73)
77 PF13424 TPR_12: Tetratricopep 48.5 29 0.00063 22.8 3.5 27 10-36 8-34 (78)
78 KOG1948|consensus 47.7 1.2E+02 0.0025 30.9 8.5 80 112-194 78-172 (1165)
79 KOG1690|consensus 47.7 50 0.0011 27.4 5.2 87 105-195 14-107 (215)
80 PRK12634 flgD flagellar basal 47.6 90 0.0019 26.0 7.0 45 152-196 121-174 (221)
81 PRK12633 flgD flagellar basal 46.9 83 0.0018 26.4 6.7 56 140-196 117-181 (230)
82 PRK02118 V-type ATP synthase s 45.9 30 0.00066 31.9 4.2 78 6-88 341-431 (436)
83 PF12863 DUF3821: Domain of un 45.8 1.3E+02 0.0028 25.0 7.5 39 136-174 103-151 (209)
84 PF14874 PapD-like: Flagellar- 45.4 1E+02 0.0022 21.5 6.6 60 136-195 17-85 (102)
85 PF09912 DUF2141: Uncharacteri 45.3 1.2E+02 0.0026 22.3 6.9 27 171-197 36-62 (112)
86 COG5000 NtrY Signal transducti 44.4 84 0.0018 30.5 6.9 30 93-122 562-591 (712)
87 KOG4234|consensus 43.8 31 0.00067 29.1 3.5 30 9-38 170-199 (271)
88 PRK11189 lipoprotein NlpI; Pro 43.7 50 0.0011 28.2 5.0 40 9-48 238-277 (296)
89 TIGR02795 tol_pal_ybgF tol-pal 41.7 67 0.0015 22.2 4.8 28 10-37 5-32 (119)
90 PF03404 Mo-co_dimer: Mo-co ox 41.7 1.5E+02 0.0033 22.4 7.0 45 153-197 42-100 (131)
91 PF03422 CBM_6: Carbohydrate b 41.6 1.3E+02 0.0029 21.6 6.9 46 153-199 60-111 (125)
92 PF01483 P_proprotein: Proprot 41.1 1.2E+02 0.0025 20.8 7.3 46 150-196 13-70 (87)
93 cd06245 M14_CPD_III The third 40.8 1E+02 0.0022 27.6 6.7 26 171-199 315-340 (363)
94 cd02678 MIT_VPS4 MIT: domain c 40.7 86 0.0019 21.2 4.9 28 8-35 7-34 (75)
95 PF12603 DUF3770: Protein of u 40.5 28 0.00062 29.7 2.9 44 6-51 4-47 (250)
96 cd03858 M14_CP_N-E_like Carbox 39.9 1.2E+02 0.0026 27.0 7.1 26 171-199 327-352 (374)
97 PRK11788 tetratricopeptide rep 39.8 1.9E+02 0.0042 24.9 8.2 44 10-53 217-260 (389)
98 cd02684 MIT_2 MIT: domain cont 39.7 90 0.0019 21.3 4.9 28 8-35 7-34 (75)
99 PF14559 TPR_19: Tetratricopep 39.7 42 0.00091 21.2 3.1 29 9-37 27-55 (68)
100 PF13115 YtkA: YtkA-like 39.6 1.2E+02 0.0026 20.5 7.7 22 176-197 55-76 (86)
101 PF12895 Apc3: Anaphase-promot 39.3 55 0.0012 21.9 3.8 23 10-32 61-83 (84)
102 TIGR02795 tol_pal_ybgF tol-pal 39.2 1.1E+02 0.0025 20.9 5.7 46 8-53 40-87 (119)
103 TIGR03517 GldM_gliding gliding 39.1 84 0.0018 29.8 6.1 62 120-188 349-412 (523)
104 TIGR03772 anch_rpt_subst ancho 39.0 2.1E+02 0.0045 26.8 8.6 58 138-197 122-192 (479)
105 cd03866 M14_CPM Peptidase M14 37.9 1.5E+02 0.0032 26.7 7.3 60 137-199 254-351 (376)
106 KOG2002|consensus 37.8 1.5E+02 0.0032 30.3 7.6 64 6-69 715-778 (1018)
107 cd05767 IgC_MHC_II_alpha Class 37.8 1.5E+02 0.0032 21.0 7.6 31 168-198 50-84 (94)
108 PF05738 Cna_B: Cna protein B- 37.8 1.1E+02 0.0024 19.7 5.1 19 170-188 31-49 (70)
109 PRK02710 plastocyanin; Provisi 37.6 1.7E+02 0.0036 21.6 7.0 21 173-195 85-105 (119)
110 PF11589 DUF3244: Domain of un 37.6 1.1E+02 0.0023 22.1 5.3 48 151-198 46-95 (106)
111 PRK10370 formate-dependent nit 37.5 63 0.0014 26.0 4.5 74 8-83 108-184 (198)
112 PF13753 SWM_repeat: Putative 37.5 1.4E+02 0.003 25.8 6.9 53 142-198 64-121 (317)
113 PF09548 Spore_III_AB: Stage I 37.2 2.1E+02 0.0045 22.6 7.7 71 11-97 68-143 (170)
114 COG2373 Large extracellular al 37.2 1.8E+02 0.004 31.5 8.7 62 137-198 407-479 (1621)
115 cd00435 ACBP Acyl CoA binding 36.8 1.5E+02 0.0032 20.8 6.1 33 21-56 3-35 (85)
116 PF13374 TPR_10: Tetratricopep 36.8 68 0.0015 17.8 3.5 27 10-36 5-31 (42)
117 PF14689 SPOB_a: Sensor_kinase 35.1 39 0.00084 22.2 2.4 24 12-35 28-51 (62)
118 cd03864 M14_CPN Peptidase M14 34.9 1.4E+02 0.0031 27.1 6.7 27 170-199 344-370 (392)
119 PF14203 DUF4319: Domain of un 34.2 25 0.00053 23.7 1.3 18 40-60 2-19 (64)
120 cd02114 bact_SorA_Moco sulfite 34.2 3.4E+02 0.0073 24.4 9.0 45 153-197 289-339 (367)
121 COG3141 DNA damage-inducible g 34.1 62 0.0013 23.3 3.3 41 8-50 15-59 (97)
122 PF09394 Inhibitor_I42: Chagas 33.6 84 0.0018 21.6 4.1 24 174-197 51-74 (92)
123 PF06016 Reovirus_L2: Reovirus 33.4 1.1E+02 0.0023 32.2 6.1 63 135-198 1035-1109(1289)
124 PF08400 phage_tail_N: Prophag 33.2 85 0.0018 24.3 4.3 28 169-199 40-67 (134)
125 COG3354 FlaG Putative archaeal 33.1 2.4E+02 0.0053 22.2 8.0 71 120-199 56-146 (154)
126 KOG2376|consensus 33.0 79 0.0017 30.5 4.8 45 7-51 110-156 (652)
127 PRK15359 type III secretion sy 32.9 70 0.0015 24.2 3.9 46 8-54 59-104 (144)
128 PRK13211 N-acetylglucosamine-b 32.6 4.2E+02 0.0092 24.8 9.9 64 131-197 317-388 (478)
129 PRK05842 flgD flagellar basal 32.3 2.6E+02 0.0056 24.5 7.6 47 150-196 163-220 (295)
130 PF10633 NPCBM_assoc: NPCBM-as 32.2 1.6E+02 0.0034 19.7 7.7 59 138-196 4-75 (78)
131 COG4856 Uncharacterized protei 32.0 1.4E+02 0.0031 27.2 6.0 47 104-159 62-110 (403)
132 COG2956 Predicted N-acetylgluc 31.5 70 0.0015 28.8 4.0 54 11-66 218-271 (389)
133 PF07965 Integrin_B_tail: Inte 30.6 1.8E+02 0.0039 20.4 5.4 30 166-195 47-77 (87)
134 cd00189 TPR Tetratricopeptide 30.5 1E+02 0.0022 18.9 4.0 56 10-67 3-58 (100)
135 PF00116 COX2: Cytochrome C ox 30.4 2.3E+02 0.0049 21.0 6.4 52 136-194 51-102 (120)
136 PRK15179 Vi polysaccharide bio 30.3 4.7E+02 0.01 25.7 9.8 62 6-72 153-214 (694)
137 TIGR03504 FimV_Cterm FimV C-te 30.3 80 0.0017 19.4 3.1 39 11-49 3-42 (44)
138 TIGR03503 conserved hypothetic 30.1 3.9E+02 0.0085 24.2 8.6 48 150-198 239-288 (374)
139 PF10632 He_PIG_assoc: He_PIG 30.1 41 0.0009 19.0 1.5 11 107-117 12-22 (29)
140 PF10579 Rapsyn_N: Rapsyn N-te 29.9 43 0.00094 23.6 2.0 31 10-40 46-76 (80)
141 PF07162 B9-C2: Ciliary basal 29.7 62 0.0014 25.5 3.2 56 136-196 58-114 (168)
142 PF06488 L_lac_phage_MSP: Lact 29.6 1.6E+02 0.0035 24.7 5.6 88 83-185 195-286 (301)
143 cd08546 cohesin_like Cohesin d 29.4 2.2E+02 0.0048 20.6 7.9 40 152-195 69-109 (135)
144 cd03868 M14_CPD_I The first ca 29.3 2.1E+02 0.0045 25.6 6.8 45 152-199 295-350 (372)
145 cd03865 M14_CPE_H Peptidase M1 29.0 2E+02 0.0043 26.3 6.7 26 171-199 355-380 (402)
146 PF10515 APP_amyloid: beta-amy 28.9 28 0.00061 22.4 0.8 19 31-49 19-37 (52)
147 TIGR00420 trmU tRNA (5-methyla 28.8 3.3E+02 0.0071 24.2 7.9 40 153-192 296-339 (352)
148 PF06384 ICAT: Beta-catenin-in 28.6 68 0.0015 22.5 2.8 23 28-50 21-43 (78)
149 PRK13736 conjugal transfer pro 28.5 3.6E+02 0.0079 22.8 8.4 78 108-189 35-113 (245)
150 PHA02604 rI.-1 hypothetical pr 28.3 1.1E+02 0.0023 23.5 4.0 69 21-105 47-116 (126)
151 KOG1834|consensus 28.3 45 0.00098 32.6 2.4 41 108-155 77-123 (952)
152 PRK15443 pduE propanediol dehy 28.0 1.1E+02 0.0023 23.8 4.0 60 5-70 46-105 (138)
153 PF03785 Peptidase_C25_C: Pept 27.4 1.4E+02 0.003 21.1 4.2 55 138-197 14-70 (81)
154 PF08308 PEGA: PEGA domain; I 27.4 84 0.0018 20.5 3.1 10 142-151 14-23 (71)
155 PF07691 PA14: PA14 domain; I 27.1 1.2E+02 0.0027 22.2 4.3 22 178-199 50-71 (145)
156 PF13429 TPR_15: Tetratricopep 27.0 76 0.0017 26.4 3.5 30 10-39 149-178 (280)
157 KOG0277|consensus 27.0 1.1E+02 0.0024 26.6 4.3 38 150-187 35-73 (311)
158 COG4387 Mu-like prophage prote 26.4 61 0.0013 24.8 2.4 30 11-40 77-107 (139)
159 PF12290 DUF3802: Protein of u 26.3 95 0.0021 23.3 3.4 24 28-51 45-68 (113)
160 PF02609 Exonuc_VII_S: Exonucl 26.3 81 0.0018 19.9 2.7 22 23-44 1-24 (53)
161 CHL00033 ycf3 photosystem I as 25.9 1.9E+02 0.0041 22.0 5.3 28 9-36 37-64 (168)
162 PRK09619 flgD flagellar basal 25.2 1.7E+02 0.0038 24.3 5.2 13 173-185 160-172 (218)
163 smart00089 PKD Repeats in poly 25.2 82 0.0018 20.8 2.7 20 179-198 46-65 (79)
164 cd00869 PI3Ka_II Phosphoinosit 25.0 82 0.0018 25.2 3.1 27 25-51 2-30 (169)
165 PF01765 RRF: Ribosome recycli 24.6 1E+02 0.0022 24.2 3.6 32 38-69 85-116 (165)
166 PF06742 DUF1214: Protein of u 24.6 69 0.0015 22.7 2.4 21 169-189 60-80 (103)
167 PF02246 B1: Protein L b1 doma 24.6 46 0.001 22.1 1.3 29 168-199 41-69 (69)
168 PF10648 Gmad2: Immunoglobulin 24.5 2.6E+02 0.0056 19.7 6.0 21 178-198 62-82 (88)
169 PF05345 He_PIG: Putative Ig d 24.5 1.1E+02 0.0024 19.0 3.0 25 172-198 19-46 (49)
170 KOG0550|consensus 24.2 2.7E+02 0.0058 26.0 6.4 64 8-73 322-385 (486)
171 PRK12633 flgD flagellar basal 23.7 2.1E+02 0.0045 24.0 5.4 17 173-189 170-187 (230)
172 PF04967 HTH_10: HTH DNA bindi 23.6 65 0.0014 20.7 1.8 28 40-67 1-30 (53)
173 COG5489 Uncharacterized conser 23.4 2E+02 0.0044 21.3 4.6 40 148-187 63-105 (107)
174 cd02861 E_set_proteins_like E 23.4 2.4E+02 0.0052 19.0 6.8 21 173-194 33-53 (82)
175 PLN03088 SGT1, suppressor of 23.3 5.2E+02 0.011 22.7 16.1 58 9-68 38-95 (356)
176 PRK02654 putative inner membra 23.1 5E+02 0.011 23.5 7.8 25 172-200 218-242 (375)
177 cd00146 PKD polycystic kidney 23.0 98 0.0021 20.5 2.8 21 179-199 48-68 (81)
178 cd03863 M14_CPD_II The second 23.0 3.8E+02 0.0082 24.1 7.3 27 171-200 327-353 (375)
179 PF13753 SWM_repeat: Putative 22.9 1.2E+02 0.0026 26.1 4.0 30 170-199 192-226 (317)
180 smart00736 CADG Dystroglycan-t 22.9 2.7E+02 0.0059 19.4 6.4 17 180-196 57-75 (97)
181 KOG1155|consensus 22.8 1.7E+02 0.0036 27.7 4.9 59 5-63 464-528 (559)
182 COG3629 DnrI DNA-binding trans 22.7 5.1E+02 0.011 22.5 8.4 60 10-69 156-216 (280)
183 cd00872 PI3Ka_I Phosphoinositi 22.5 99 0.0021 24.8 3.1 45 25-69 2-48 (171)
184 PF08750 CNP1: CNP1-like famil 22.4 3.4E+02 0.0074 21.0 6.0 9 150-158 62-70 (139)
185 PF09976 TPR_21: Tetratricopep 22.3 2.3E+02 0.005 21.0 5.1 29 9-37 50-78 (145)
186 PF05381 Peptidase_C21: Tymovi 22.3 1.2E+02 0.0026 22.4 3.3 38 154-192 57-94 (104)
187 TIGR00756 PPR pentatricopeptid 22.2 1.3E+02 0.0029 15.6 3.7 27 14-40 7-33 (35)
188 PRK10945 gene expression modul 22.2 2.3E+02 0.005 19.5 4.3 43 5-54 6-49 (72)
189 PF11110 Phage_hub_GP28: Basep 22.1 99 0.0022 24.3 2.9 25 26-50 18-43 (151)
190 COG4263 NosZ Nitrous oxide red 21.7 5.3E+02 0.011 24.4 7.9 23 177-199 591-613 (637)
191 TIGR03769 P_ac_wall_RPT actino 21.6 1E+02 0.0022 18.6 2.4 16 182-197 7-22 (41)
192 cd02681 MIT_calpain7_1 MIT: do 21.5 1.7E+02 0.0038 20.1 3.8 27 9-35 8-34 (76)
193 PRK10153 DNA-binding transcrip 21.4 1.2E+02 0.0026 28.5 3.9 34 8-41 454-487 (517)
194 PF13873 Myb_DNA-bind_5: Myb/S 21.3 1.3E+02 0.0028 20.0 3.1 10 59-68 37-46 (78)
195 PF11164 DUF2948: Protein of u 21.3 1.1E+02 0.0024 23.7 3.0 23 178-200 88-110 (138)
196 TIGR03773 anch_rpt_wall putati 21.2 3.8E+02 0.0083 25.4 7.1 59 139-198 353-421 (513)
197 PRK15179 Vi polysaccharide bio 21.1 1.8E+02 0.0039 28.6 5.1 32 8-39 87-118 (694)
198 PF04234 CopC: CopC domain; I 21.0 2.3E+02 0.0051 19.9 4.6 13 173-185 69-81 (97)
199 PRK10301 hypothetical protein; 21.0 1.7E+02 0.0036 22.0 3.9 13 173-185 96-108 (124)
200 PF04465 DUF499: Protein of un 20.9 2.6E+02 0.0057 28.9 6.3 63 136-198 837-902 (1035)
201 PF10516 SHNi-TPR: SHNi-TPR; 20.8 96 0.0021 18.4 2.1 27 10-36 4-30 (38)
202 PRK06655 flgD flagellar basal 20.8 4E+02 0.0088 22.2 6.6 16 174-189 168-183 (225)
203 PF10670 DUF4198: Domain of un 20.7 4.2E+02 0.0092 20.8 6.6 22 174-195 71-92 (215)
204 PF00901 Orbi_VP5: Orbivirus o 20.4 4.5E+02 0.0098 24.8 7.2 69 23-92 121-194 (508)
205 PF03054 tRNA_Me_trans: tRNA m 20.4 2.2E+02 0.0047 25.6 5.1 40 152-191 299-342 (356)
206 PF10267 Tmemb_cc2: Predicted 20.3 2.7E+02 0.0059 25.4 5.7 99 17-143 22-127 (395)
207 PF07954 DUF1689: Protein of u 20.2 1.1E+02 0.0025 24.1 2.9 26 32-57 6-31 (152)
208 PF02287 Dehydratase_SU: Dehyd 20.2 1.5E+02 0.0032 22.9 3.4 60 5-70 47-106 (136)
209 PF12080 GldM_C: GldM C-termin 20.2 4.5E+02 0.0098 21.0 6.6 67 111-187 17-87 (181)
210 smart00606 CBD_IV Cellulose Bi 20.2 3.5E+02 0.0075 19.6 8.3 48 152-199 67-119 (129)
211 cd00603 IPT_PCSR IPT domain of 20.0 2.9E+02 0.0063 18.6 7.2 54 141-199 17-74 (90)
212 cd03864 M14_CPN Peptidase M14 20.0 38 0.00082 30.8 0.2 31 22-52 3-41 (392)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-40 Score=264.07 Aligned_cols=131 Identities=47% Similarity=0.731 Sum_probs=119.9
Q ss_pred cHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhc--cchHHHHHH
Q psy5367 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMA 83 (201)
Q Consensus 6 ~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~--~~~~~~~~i 83 (201)
.||+-+|+||||||||||+||++.||.++..+++|++||||||||||||+||+||+|||++++++||++ ++..++.+|
T Consensus 4 ~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv~lI 83 (268)
T COG5040 4 SREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQVELI 83 (268)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999986 557788999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccceEEEecccCCCccceeeCCCCCcceeCCceeEEeecc
Q psy5367 84 REYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTR 148 (201)
Q Consensus 84 ~~yr~kIe~EL~~iC~eil~l~~i~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt~ 148 (201)
++||++||.||..||++||+.+.. ++.+....-.+||+.+. |++++++++..-
T Consensus 84 ~eyrkkiE~EL~~icddiL~vl~~-----hlipaa~~~EskvFyyK-------MKGDYyRYlAEf 136 (268)
T COG5040 84 KEYRKKIETELTKICDDILSVLEK-----HLIPAATTGESKVFYYK-------MKGDYYRYLAEF 136 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hcccccccccceEEEEe-------ecchHHHHHHHh
Confidence 999999999999999999999876 45566667789999998 888887776554
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=4.2e-38 Score=264.67 Aligned_cols=131 Identities=49% Similarity=0.708 Sum_probs=116.9
Q ss_pred HHHHHHHHHhHHHhccHHHHHHHHHHHHhc-C-CCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhc--cchHHHHH
Q psy5367 7 KEELVQRAKLAEQAERYDDMAAAMKAVTET-G-VELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQM 82 (201)
Q Consensus 7 r~~~~~~aklae~~ery~dm~~~mk~~~~~-~-~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~--~~~~~~~~ 82 (201)
|++++|+||||+||||||||+++||+++++ + .+||.||||||||||||+||++|+|||+|+++|||++ ++++++++
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999998 6 5999999999999999999999999999999999964 55678889
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccceEEEecccCCCccceeeCCCCCcceeCCceeEEeeccC
Q psy5367 83 AREYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRR 149 (201)
Q Consensus 83 i~~yr~kIe~EL~~iC~eil~l~~i~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~ 149 (201)
+++||++|+.||..+|+++|++++- .+.+....+.++|++.. +.+++++++..-.
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~-----~Lip~~~~~eskVFy~K-------mKGDYyRYlaE~~ 135 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLES-----HLIPSASAAESKVFYLK-------MKGDYHRYLAEFK 135 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hCccccCcHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 9999999999999999999999986 34555455688999887 8888888876643
No 3
>KOG0841|consensus
Probab=100.00 E-value=5.9e-36 Score=246.66 Aligned_cols=134 Identities=55% Similarity=0.799 Sum_probs=116.5
Q ss_pred cHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhc--cchHHHHHH
Q psy5367 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTE--GSERKQQMA 83 (201)
Q Consensus 6 ~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~--~~~~~~~~i 83 (201)
+|+++|++|||+|||||||||+++||.+++.+.+||.||||||||+|||+||+||+|||+|++||||++ +++.++..|
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999999975 678899999
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccccceEEEecccC-CCccceeeCCCCCcceeCCceeEEeeccCCC
Q psy5367 84 REYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAVC-DATQVLCSGSGLSVGTLGQDIRSFIDTRRAG 151 (201)
Q Consensus 84 ~~yr~kIe~EL~~iC~eil~l~~i~gSPf~v~v~~~~-Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG 151 (201)
+.||++||.||..+|+++|.+++- +.....+. ..++|+.+ .+++++++++.+..+|
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~-----~Li~sa~~~~es~vf~~-------kmKgdy~rylae~~sg 137 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDK-----HLIPSATLPGESKVFYL-------KMKGDYYRYLAEFASG 137 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhcccccccceeee-------eccchhHHHHHHhcch
Confidence 999999999999999999998874 23322211 34456655 4899999998876544
No 4
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=3.1e-33 Score=234.91 Aligned_cols=130 Identities=46% Similarity=0.741 Sum_probs=110.5
Q ss_pred HHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhcc--chHHHHHHH
Q psy5367 7 KEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEG--SERKQQMAR 84 (201)
Q Consensus 7 r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~~--~~~~~~~i~ 84 (201)
|++++|||||++|||||+||+++||++++.+++||.||||||||||||+||++|+|||+|+++++++++ +..++.+++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999864 578899999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccccccceEEEecccCCCccceeeCCCCCcceeCCceeEEeecc
Q psy5367 85 EYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTR 148 (201)
Q Consensus 85 ~yr~kIe~EL~~iC~eil~l~~i~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt~ 148 (201)
+||++|+.||..+|++++++++- .+.+......++|+++. +.+++++++..-
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~-----~Lip~~~~~eskvfy~K-------mkgDyyRYlaE~ 132 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDK-----SLIPSATSPESKVFYYK-------MKGDYYRYLAEF 132 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----TCHHHS-SHHHHHHHHH-------HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHhccccchhHHHHHHH-------Hhcccccccccc
Confidence 99999999999999999999985 23333334557888776 666666655443
No 5
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=99.84 E-value=2.2e-20 Score=135.62 Aligned_cols=79 Identities=41% Similarity=0.632 Sum_probs=75.9
Q ss_pred CccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCC-cceeEEEECCCCEEEEEEeeCCCeeEEEEEEECccc
Q psy5367 122 ATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNK-VAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 122 askv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g-~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
|++|+++|+||..+.+|++++|+|+++++|.+.++|.|.+|+| .+++++.|++||+|.|+|+|..+|.|+|+|+|+|+.
T Consensus 1 p~~~~v~G~Gl~~~~vg~~~~f~v~~~d~G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g~~ 80 (93)
T smart00557 1 ASKVKASGPGLEKGVVGEPAEFTIDTRGAGGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGGEH 80 (93)
T ss_pred CCeEEEECCCcCceecCCCEEEEEEcCCCCCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECCEE
Confidence 6899999999999999999999999999999999999999998 589999999999999999999999999999999863
No 6
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=99.78 E-value=1.4e-18 Score=126.73 Aligned_cols=81 Identities=30% Similarity=0.476 Sum_probs=74.6
Q ss_pred CCCccceeeCCCCCcceeCCceeEEeeccCCCCC-------eeeEEEeCCCCc-----ceeEEEECCCCEEEEEEeeCCC
Q psy5367 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPG-------ELSAHCVGPNKV-----AYCELYDHSDGTFTLNVKPQES 187 (201)
Q Consensus 120 ~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g-------~l~v~I~gp~g~-----~~~~v~d~~dgty~v~y~P~~~ 187 (201)
.||++|+++|+||+.+.+|++++|+|++++++++ .+.|.|.+|++. +++++.++.||+|.|+|+|..+
T Consensus 2 ~dp~~~~v~G~gl~~~~~g~~~~F~V~~~d~~g~~~~~~~~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~ 81 (101)
T PF00630_consen 2 IDPSKCKVSGPGLEPAVVGEPATFTVDTRDAGGNPVSSGGDEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEP 81 (101)
T ss_dssp CSGCGEEEESGGGTEEETTSEEEEEEEETTTTSSBEESTSSEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSS
T ss_pred CCCCEEEEECCccCCeECCCcEEEEEEEccCCCCccccCCceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCcc
Confidence 5999999999999999999999999999997554 577999999984 7789999999999999999999
Q ss_pred eeEEEEEEECccc
Q psy5367 188 GRHVLTVKYGDLC 200 (201)
Q Consensus 188 G~y~i~V~~~g~~ 200 (201)
|.|+|+|+|+|+.
T Consensus 82 G~y~i~V~~~g~~ 94 (101)
T PF00630_consen 82 GKYKISVKINGQP 94 (101)
T ss_dssp EEEEEEEEESSEB
T ss_pred EeEEEEEEECCEE
Confidence 9999999999864
No 7
>KOG0518|consensus
Probab=99.75 E-value=3.6e-18 Score=163.24 Aligned_cols=99 Identities=33% Similarity=0.518 Sum_probs=91.1
Q ss_pred hhhcccccccceEEEeccc-CCCccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEE
Q psy5367 101 VLKRSQVKGCPLKVLVSAV-CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFT 179 (201)
Q Consensus 101 il~l~~i~gSPf~v~v~~~-~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~ 179 (201)
..++.|||||||.+.|... .||++++++|+|+..|..-++++|+|||++||.|.|++.++||++ +...+.|+.|||+.
T Consensus 736 k~~G~hVpgsPf~i~V~~~e~dAsk~~v~g~g~~~G~t~ep~~fivDtr~agyGgLsi~~~Gpsk-vd~~~~d~~dGt~k 814 (1113)
T KOG0518|consen 736 KVAGKHVPGSPFSIKVSESEIDASKVRVSGQGLKEGHTFEPAEFIVDTRKAGYGGLSISVQGPSK-VDLNVEDREDGTCK 814 (1113)
T ss_pred EEcceECCCCCeEEEeccccccceeEEEecccccccccccchheEeccccCCCCceEEEEeCCcc-cccceeecCCCeEE
Confidence 3468899999999999744 579999999999999988899999999999999999999999994 56788999999999
Q ss_pred EEEeeCCCeeEEEEEEECccc
Q psy5367 180 LNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 180 v~y~P~~~G~y~i~V~~~g~~ 200 (201)
|+|+|++||.|.|+|+|+++.
T Consensus 815 V~ytPtepG~Y~I~i~Fad~~ 835 (1113)
T KOG0518|consen 815 VSYTPTEPGTYIINIKFADEH 835 (1113)
T ss_pred EEEeCCCCceEEEEEEEcCcc
Confidence 999999999999999999864
No 8
>KOG0518|consensus
Probab=99.33 E-value=3.2e-12 Score=122.98 Aligned_cols=98 Identities=23% Similarity=0.320 Sum_probs=90.3
Q ss_pred hhhcccccccceEEEecccCCCccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCCc-ceeEEEECCCCEEE
Q psy5367 101 VLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKV-AYCELYDHSDGTFT 179 (201)
Q Consensus 101 il~l~~i~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~-~~~~v~d~~dgty~ 179 (201)
-+...++|||||++.+....||+++.+. ||..|..++|-+|+||+++||-..+.|.|-++.++ .++.+.+++|++|.
T Consensus 243 ~~gg~~v~GsPf~~~t~~~~Dp~kiki~--gl~~gr~~~p~~F~vD~S~aG~~pl~v~V~g~r~p~e~v~~v~~~d~t~~ 320 (1113)
T KOG0518|consen 243 YYGGVPVPGSPFRVATCDKVDPSKIKIS--GLPKGRLNKPQYFTVDASKAGLLPLEVAVCGGRVPVEPVMAVALGDGTYN 320 (1113)
T ss_pred eecccccCCCCeeeeeecccChhheeec--CCCcccccCCeeEEEechhcCccceEEEecCCCCcccceEEecCCCceeE
Confidence 4456789999999988888999999999 69989999999999999999999999999999986 77899999999999
Q ss_pred EEEeeCCCeeEEEEEEECccc
Q psy5367 180 LNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 180 v~y~P~~~G~y~i~V~~~g~~ 200 (201)
|+|+|...|.|+|+|.++++.
T Consensus 321 V~fvPs~~g~~~isV~~ade~ 341 (1113)
T KOG0518|consen 321 VSFVPSEDGPYTISVRIADED 341 (1113)
T ss_pred EEEeEcccCCeeEEEEecCCc
Confidence 999999999999999998763
No 9
>PF06312 Neurexophilin: Neurexophilin
Probab=95.96 E-value=0.028 Score=46.93 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=40.1
Q ss_pred CCCeeeEEEeCCCCc--ceeEEEECCCCEEEEEEeeCCCeeEEEEEEE
Q psy5367 151 GPGELSAHCVGPNKV--AYCELYDHSDGTFTLNVKPQESGRHVLTVKY 196 (201)
Q Consensus 151 G~g~l~v~I~gp~g~--~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~ 196 (201)
|=|++++.|.+|+-. +..+|+|.+||||+|+|+---+|.-.|+|.+
T Consensus 68 G~GDfrAri~s~~l~ag~~G~V~Dh~NGTYtv~F~L~W~G~v~vsV~L 115 (219)
T PF06312_consen 68 GWGDFRARIFSPKLKAGAAGKVTDHGNGTYTVSFPLLWPGQVSVSVSL 115 (219)
T ss_pred CCCCcEEEEecCCccccceEEEEECCCCeEEEEEEeecCceEEEEEEE
Confidence 537779999998753 7799999999999999999999999999875
No 10
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=91.27 E-value=2 Score=30.47 Aligned_cols=61 Identities=13% Similarity=0.163 Sum_probs=41.7
Q ss_pred eCCceeEEeeccCC-------CCCeeeEEEeCCCCc--ceeEE-EECCCCEEEEEEee-CC--CeeEEEEEEEC
Q psy5367 137 LGQDIRSFIDTRRA-------GPGELSAHCVGPNKV--AYCEL-YDHSDGTFTLNVKP-QE--SGRHVLTVKYG 197 (201)
Q Consensus 137 vg~~~~f~Vdt~~a-------G~g~l~v~I~gp~g~--~~~~v-~d~~dgty~v~y~P-~~--~G~y~i~V~~~ 197 (201)
.|+...|.+-.++. ....+.+.|.+|+|. ..... ..+..|.|..+|.= .. .|.|+|.+.+.
T Consensus 13 PGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 13 PGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEET
T ss_pred CCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEc
Confidence 45556665543332 235789999999995 33444 45789999999964 33 39999999994
No 11
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=90.24 E-value=1.5 Score=29.74 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=28.1
Q ss_pred eeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 155 LSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 155 l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
..|.+....+.......-+.+|.|.+.-.|. |.|.|.+...|.
T Consensus 17 a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~--g~Y~l~v~~~g~ 59 (82)
T PF13620_consen 17 ATVTLTDQDGGTVYTTTTDSDGRFSFEGLPP--GTYTLRVSAPGY 59 (82)
T ss_dssp -EEEET--TTTECCEEE--TTSEEEEEEE-S--EEEEEEEEBTTE
T ss_pred EEEEEEEeeCCCEEEEEECCCceEEEEccCC--EeEEEEEEECCc
Confidence 4556665555444667788899999997776 999999987764
No 12
>PF02369 Big_1: Bacterial Ig-like domain (group 1); InterPro: IPR003344 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 1CWV_A 4E9L_A 1F02_I 1F00_I.
Probab=90.10 E-value=1.9 Score=31.22 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=24.9
Q ss_pred EEEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 169 ELYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 169 ~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
....+.+|.+.++|+...+|.|.|.+.++|.
T Consensus 61 ~~~Td~~G~a~~tltst~aG~~~VtA~~~~~ 91 (100)
T PF02369_consen 61 SATTDSNGIATVTLTSTKAGTYTVTATVDGG 91 (100)
T ss_dssp -EEE-TTSEEEEEEE-SS-EEEEEEEEETTE
T ss_pred ccEECCCEEEEEEEEecCceEEEEEEEECCc
Confidence 4778899999999999999999999999874
No 13
>KOG3287|consensus
Probab=89.99 E-value=2.1 Score=35.72 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=45.7
Q ss_pred cceEEEecccCCCccceeeCCCCCcceeCCceeEEee---ccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCC
Q psy5367 110 CPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFID---TRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQE 186 (201)
Q Consensus 110 SPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vd---t~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~ 186 (201)
.-|++.+ +|.|-.|+ -++...+ .+|.++ ...+|...+..++..|.|.+-+.=.-..||.|+++ |++
T Consensus 34 ~dftv~i----pAGk~eCf---~Q~v~~~--~tle~eyQVi~G~GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e--~~e 102 (236)
T KOG3287|consen 34 YDFTVMI----PAGKTECF---YQPVPQG--ATLEVEYQVIDGAGDLDIDFTLLNPAGEVLVSDQRKVDGVHTVE--VTE 102 (236)
T ss_pred cceEEEe----cCCCceee---eeeccCC--eEEEEEEEEEecCCccceeeEEeCCCccEEeecccccCceeEee--ccC
Confidence 5677776 55554433 1222223 444333 12257778888899999954344445678888766 778
Q ss_pred CeeEEEEE
Q psy5367 187 SGRHVLTV 194 (201)
Q Consensus 187 ~G~y~i~V 194 (201)
+|+|.+..
T Consensus 103 ~GdY~~Cf 110 (236)
T KOG3287|consen 103 TGDYQVCF 110 (236)
T ss_pred CcceEEEE
Confidence 99999874
No 14
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=89.41 E-value=1.4 Score=31.84 Aligned_cols=65 Identities=11% Similarity=0.048 Sum_probs=34.5
Q ss_pred CCCccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 120 ~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
.+|+.+.+. .|++..+.+.-.+.+. -.+.+.+ ... ...=....+.+++|+|..||.|.+...+.+
T Consensus 32 f~P~~i~v~--------~G~~v~l~~~N~~~~~--h~~~i~~--~~~--~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~ 96 (104)
T PF13473_consen 32 FSPSTITVK--------AGQPVTLTFTNNDSRP--HEFVIPD--LGI--SKVLPPGETATVTFTPLKPGEYEFYCTMHP 96 (104)
T ss_dssp EES-EEEEE--------TTCEEEEEEEE-SSS---EEEEEGG--GTE--EEEE-TT-EEEEEEEE-S-EEEEEB-SSS-
T ss_pred EecCEEEEc--------CCCeEEEEEEECCCCc--EEEEECC--Cce--EEEECCCCEEEEEEcCCCCEEEEEEcCCCC
Confidence 455555554 5777888776554333 3334433 222 222234467999999999999998766543
No 15
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=89.06 E-value=0.21 Score=35.59 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.7
Q ss_pred hhhcccccccceEEEec
Q psy5367 101 VLKRSQVKGCPLKVLVS 117 (201)
Q Consensus 101 il~l~~i~gSPf~v~v~ 117 (201)
.++..+|+||||.+.|.
T Consensus 75 ~~~g~~I~gSPF~v~V~ 91 (93)
T smart00557 75 KFGGEHIPGSPFTVKVG 91 (93)
T ss_pred EECCEECCCCCEEEEEe
Confidence 56788999999999984
No 16
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.52 E-value=1.1 Score=24.87 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=26.0
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
-+..++.+..+.++|++.++++++.++++|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999987663
No 17
>PF13115 YtkA: YtkA-like
Probab=87.45 E-value=5.8 Score=27.37 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=31.9
Q ss_pred CeeeEEEeCCC--C----cceeEEEECCCCEEEEEEeeCCCeeEEEEE
Q psy5367 153 GELSAHCVGPN--K----VAYCELYDHSDGTFTLNVKPQESGRHVLTV 194 (201)
Q Consensus 153 g~l~v~I~gp~--g----~~~~~v~d~~dgty~v~y~P~~~G~y~i~V 194 (201)
+.+.+.+.-|. | ...+.+...++|.|.++...+.+|.|.|.|
T Consensus 38 a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m~G~W~i~v 85 (86)
T PF13115_consen 38 ADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSMAGTWQITV 85 (86)
T ss_pred CEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCCCeeEEEEE
Confidence 35667776664 2 244566667899999999999999999987
No 18
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=87.40 E-value=6.3 Score=27.23 Aligned_cols=47 Identities=15% Similarity=0.184 Sum_probs=32.6
Q ss_pred CCCeeeEEEeCCCCc-ce-eEEEECCCCEEEEEEe-------eCCCeeEEEEEEEC
Q psy5367 151 GPGELSAHCVGPNKV-AY-CELYDHSDGTFTLNVK-------PQESGRHVLTVKYG 197 (201)
Q Consensus 151 G~g~l~v~I~gp~g~-~~-~~v~d~~dgty~v~y~-------P~~~G~y~i~V~~~ 197 (201)
+...+.+.|...+|. +. ..+-...-|.+.++|- |..+|.|++.|...
T Consensus 23 ~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~~WdG~d~~G~~~~~G~Y~~~v~a~ 78 (81)
T PF13860_consen 23 DADNVTVTIYDSNGQVVRTISLGSQSAGEHSFTWDGKDDDGNPVPDGTYTFRVTAT 78 (81)
T ss_dssp SCEEEEEEEEETTS-EEEEEEEEECSSEEEEEEE-SB-TTS-B--SEEEEEEEEEE
T ss_pred cccEEEEEEEcCCCCEEEEEEcCCcCCceEEEEECCCCCCcCCCCCCCEEEEEEEE
Confidence 456788999999885 32 3445566788999998 88899999988753
No 19
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.27 E-value=1.5 Score=24.01 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGV 38 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~ 38 (201)
-++.+|.+..+.+++++.++.+++++...|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 467899999999999999999999997654
No 20
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=86.36 E-value=1.3 Score=29.93 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=24.6
Q ss_pred CCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 173 HSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 173 ~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
..+|+|.|...++.+|.|.|+|++++.
T Consensus 19 ~~~G~FLvR~s~~~~~~~~Lsv~~~~~ 45 (77)
T PF00017_consen 19 KPDGTFLVRPSSSKPGKYVLSVRFDGK 45 (77)
T ss_dssp SSTTEEEEEEESSSTTSEEEEEEETTE
T ss_pred CCCCeEEEEeccccccccccccccccc
Confidence 678999999999999999999999874
No 21
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.66 E-value=1.4 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGV 38 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~ 38 (201)
-+..++++..+.+.|+.+.+++++.+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999988754
No 22
>KOG1428|consensus
Probab=84.26 E-value=0.99 Score=47.16 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.6
Q ss_pred eeEEEECCCCEEEEEEeeCCCeeEEEEEEECccc
Q psy5367 167 YCELYDHSDGTFTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 167 ~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
..-+.-+.||+|..+|||...|.|+|.|+++|..
T Consensus 2097 ~m~ir~nnd~~y~~nWTP~a~G~Y~l~~tiDG~e 2130 (3738)
T KOG1428|consen 2097 NMLIRVNNDGTYCANWTPGAIGLYTLHVTIDGIE 2130 (3738)
T ss_pred cceEEecCCCceecccCCccceeEEEEEEeccee
Confidence 3455678999999999999999999999999853
No 23
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=83.68 E-value=1.4 Score=28.82 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=16.3
Q ss_pred EEEEeeCCCeeEEEEEEECc
Q psy5367 179 TLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 179 ~v~y~P~~~G~y~i~V~~~g 198 (201)
.++|+|..||+|++.|+..+
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEEES--SEEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEEC
Confidence 99999999999999998754
No 24
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=83.55 E-value=15 Score=29.32 Aligned_cols=60 Identities=10% Similarity=0.058 Sum_probs=38.7
Q ss_pred eCCceeEEeeccCCCCCeeeEEEeCCCCcc-----eeEEEECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 137 LGQDIRSFIDTRRAGPGELSAHCVGPNKVA-----YCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 137 vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~-----~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
.|++..|.|--.+..-....|.+..+++.. ...+..+.+| .++|+|..+|.|.|.+.+.+
T Consensus 149 ~g~~~~~~vl~~GkPl~~a~V~~~~~~~~~~~~~~~~~~~TD~~G--~~~~~~~~~G~wli~a~~~~ 213 (215)
T PF10670_consen 149 AGDPLPFQVLFDGKPLAGAEVEAFSPGGWYDVEHEAKTLKTDANG--RATFTLPRPGLWLIRASHKD 213 (215)
T ss_pred CCCEEEEEEEECCeEcccEEEEEEECCCccccccceEEEEECCCC--EEEEecCCCEEEEEEEEEec
Confidence 456666665543322233555665555431 4566777788 56788999999999998764
No 25
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=83.19 E-value=6.7 Score=27.44 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.1
Q ss_pred CCCCEEEEEEeeCCCeeEEEEE
Q psy5367 173 HSDGTFTLNVKPQESGRHVLTV 194 (201)
Q Consensus 173 ~~dgty~v~y~P~~~G~y~i~V 194 (201)
.......+.|.|..+|.|+|.|
T Consensus 56 ~~~~~~~~~~~~~~~G~h~l~v 77 (89)
T PF06832_consen 56 TTQPGHQLFWQPDRPGEHTLTV 77 (89)
T ss_pred cCCCCCeEEeCCCCCeeEEEEE
Confidence 3444578899999999999998
No 26
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=82.45 E-value=5.3 Score=27.74 Aligned_cols=63 Identities=11% Similarity=0.152 Sum_probs=33.9
Q ss_pred eCCceeEEeeccCCCCC---eeeEEEeCCCCc-ceeEE---EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 137 LGQDIRSFIDTRRAGPG---ELSAHCVGPNKV-AYCEL---YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 137 vg~~~~f~Vdt~~aG~g---~l~v~I~gp~g~-~~~~v---~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.|++..+++.-++.|.+ .+.+.+...... ....+ ......++.++|+|..+|.|.|.+.++..
T Consensus 17 ~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTADAENVTVRLYLDGNSVSTVTIPSLAPGESETVTFTWTPPSPGSYTIRVVIDPD 86 (101)
T ss_dssp TTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEESTT
T ss_pred CCCEEEEEEEEEECCCCCCCCEEEEEEECCceeccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEeeC
Confidence 45666666655554443 244444333322 11222 22333468888999999999999988643
No 27
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.33 E-value=3.3 Score=23.05 Aligned_cols=30 Identities=10% Similarity=0.044 Sum_probs=25.6
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
+..++.+..+.++|++.+++.++.++++|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 567889999999999999999999998764
No 28
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.77 E-value=3.6 Score=24.72 Aligned_cols=31 Identities=6% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
-++.+|+...+.|++++..+..+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999987664
No 29
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=81.65 E-value=1.7 Score=29.78 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=23.0
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
...++|+|-|...+..+|.|.|+|++++.
T Consensus 18 ~~~~~G~FLvR~s~~~~~~~~Lsv~~~~~ 46 (84)
T smart00252 18 KNEGDGDFLVRDSESEPGDYVLSVRVKGK 46 (84)
T ss_pred hcCCCcEEEEEcCCCCCCCEEEEEEECCE
Confidence 34558899999888888999998888753
No 30
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=81.01 E-value=13 Score=24.55 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=32.0
Q ss_pred EEeeccCCCCCeeeEEEeCCCCcceeEEEECC--CC-EEEEEEeeCCCeeEEEEEE
Q psy5367 143 SFIDTRRAGPGELSAHCVGPNKVAYCELYDHS--DG-TFTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 143 f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~--dg-ty~v~y~P~~~G~y~i~V~ 195 (201)
+.|+... +.+.+.+.+..++|..-....+.. .| .=.++|++..+|.|.|.|.
T Consensus 15 l~i~l~~-~~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V~ 69 (70)
T PF04151_consen 15 LTIDLSG-GSGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRVY 69 (70)
T ss_dssp EEEEECE-TTSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEEE
T ss_pred EEEEEcC-CCCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEEE
Confidence 4444432 333666778888764222222222 23 4778899999999999985
No 31
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=80.84 E-value=16 Score=27.71 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=37.8
Q ss_pred CCeeeEEEeCCCCc---ceeEEEECCCCEEEEEEeeCCCeeEEEEEEEC
Q psy5367 152 PGELSAHCVGPNKV---AYCELYDHSDGTFTLNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 152 ~g~l~v~I~gp~g~---~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~ 197 (201)
+..+++.+..|+.. ....+...++|.|........+|.+.|.|.+.
T Consensus 85 ~~~~~l~l~rp~~~~~D~~~~l~~~~~g~y~~~~~~~~~G~W~l~l~~~ 133 (146)
T PF05751_consen 85 GAKLTLSLYRPTDAKLDFTLTLTESAPGVYRAPVPLLKKGRWYLRLDWE 133 (146)
T ss_pred CceEEEEEECCCCccCCeeEEeeECCCceEEEEcCCCCCccEEEEEEEe
Confidence 55688888888863 55677788999999999888999999999654
No 32
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=77.83 E-value=16 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.289 Sum_probs=35.5
Q ss_pred eeCCceeEEeeccCCCCCeeeEEE--eCCCCc--ceeEEEECCCCEEEEEEeeCCCeeEEEEEE
Q psy5367 136 TLGQDIRSFIDTRRAGPGELSAHC--VGPNKV--AYCELYDHSDGTFTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~aG~g~l~v~I--~gp~g~--~~~~v~d~~dgty~v~y~P~~~G~y~i~V~ 195 (201)
++|+...+.-+--.-|.+.+.+.+ ..|++. ..+-+...++..|.-+|+|..+|.|+..|.
T Consensus 24 vvGe~v~V~Adif~DGHD~l~A~l~~r~~~~~~w~~vpM~~~gnDrW~a~f~~~~~G~~~f~Ve 87 (187)
T PF11896_consen 24 VVGEPVPVSADIFRDGHDALAAELLWRHPGEREWQEVPMTPLGNDRWEASFTPDRPGRYEFRVE 87 (187)
T ss_dssp ETT-EEEEEEEE--SSSS-EEEEEEEE-TTS-B----B-EESTS-EEEEEEE--SSEEEEEEEE
T ss_pred ecCCeEEEEEEEEecCCCcEEEEEEEECCCCCcceeeccccCCCCEEEEEEECCCceeEEEEEE
Confidence 567776665554445888887774 566663 345566678889999999999999887764
No 33
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=76.31 E-value=4.3 Score=28.14 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=24.7
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.+..+|+|-|...+..+|.|.|+|++.+.
T Consensus 17 ~~~~~G~FLiR~s~~~~~~~~Lsv~~~~~ 45 (94)
T cd00173 17 KKKPDGTFLVRDSESSPGDYVLSVRVKGK 45 (94)
T ss_pred hcCCCceEEEEecCCCCCCEEEEEEECCE
Confidence 34688999999999999999999998763
No 34
>KOG4637|consensus
Probab=75.70 E-value=2.4 Score=38.14 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=30.2
Q ss_pred ceeEEEECCCCEEEEEEeeCCCeeEEEEEEECccc
Q psy5367 166 AYCELYDHSDGTFTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 166 ~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
+.-.+.|..||+|-|.=.-+.+|+|+++++++|..
T Consensus 35 v~~~L~d~PDGsFlVRdAstm~GdYTLtl~k~g~~ 69 (464)
T KOG4637|consen 35 VNKKLRDQPDGSFLVRDASTMQGDYTLTLRKGGNN 69 (464)
T ss_pred HHHHhcCCCCCcEEeeccccCCCceEEEEecCCcc
Confidence 44566799999999999888999999999999863
No 35
>KOG2996|consensus
Probab=75.66 E-value=2 Score=40.94 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=29.0
Q ss_pred eEEEECCCCEEEEEEeeCCCeeEEEEEEECccc
Q psy5367 168 CELYDHSDGTFTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 168 ~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
..+....+|||-|.|.|.+.+.|-|+|+|++..
T Consensus 699 s~Lk~~~ngT~LVR~r~kea~e~AISikynnev 731 (865)
T KOG2996|consen 699 STLKNRPNGTYLVRYRTKEAKEFAISIKYNNEV 731 (865)
T ss_pred hHhhcCCCceEEEEecccchhheeEEEEecccc
Confidence 444578899999999999999999999999763
No 36
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.81 E-value=11 Score=30.16 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=32.9
Q ss_pred CceeEEeeccCCCCC--eeeEEEeCCCCcceeEEEECCCCEEEEEEeeC----CCeeEEEEE
Q psy5367 139 QDIRSFIDTRRAGPG--ELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQ----ESGRHVLTV 194 (201)
Q Consensus 139 ~~~~f~Vdt~~aG~g--~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~----~~G~y~i~V 194 (201)
--++|++.|++ |.. .|-+.|.|. ..|+. .....+.|.|+|+-. ..|.|.|.+
T Consensus 43 fi~EFsl~C~n-~~~~~~LyAeV~Gk--~~PVa-r~~~~nkYQVSW~~e~k~a~sG~y~V~~ 100 (167)
T PF05404_consen 43 FIAEFSLKCSN-GAKNISLYAEVNGK--ILPVA-RSGDTNKYQVSWTEEHKKASSGTYEVKF 100 (167)
T ss_pred EEEEEEEEeCC-CCcCccEEEEECCE--EEEEE-EcCCCCceEEEEEechhhccCCceEEEE
Confidence 34589999987 433 466666632 23332 233338899999975 457877664
No 37
>KOG1691|consensus
Probab=74.55 E-value=13 Score=30.81 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=32.3
Q ss_pred CCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEE
Q psy5367 129 GSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVL 192 (201)
Q Consensus 129 G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i 192 (201)
.+-+....+---.+..+++.+.++..+++.|++|.|..+....+-.+|. +.|+..++|.|.+
T Consensus 36 ~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~gq--FaFta~e~~~y~~ 97 (210)
T KOG1691|consen 36 SEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKGQ--FAFTAEESGMYEA 97 (210)
T ss_pred hhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccce--EEEEeccCCcEEE
Confidence 3345544332223445666543335799999999996544444433442 2233444444433
No 38
>smart00634 BID_1 Bacterial Ig-like domain (group 1).
Probab=73.88 E-value=28 Score=24.41 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.2
Q ss_pred EEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 170 LYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 170 v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
...+.+|.+.+.+++..+|.++|.++..|.
T Consensus 56 ~~Td~~G~a~~~l~~~~~G~~~vta~~~~~ 85 (92)
T smart00634 56 ATTDANGIATVTLTSTTAGVYTVTASLENG 85 (92)
T ss_pred eeeCCCCEEEEEEECCCCcEEEEEEEECCC
Confidence 356779999999999999999999998774
No 39
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=72.99 E-value=28 Score=24.12 Aligned_cols=56 Identities=9% Similarity=0.094 Sum_probs=34.4
Q ss_pred ceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 140 DIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 140 ~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
...|.|.+-.| ..+.+.+..+ ......+...++|.|.++-.+..+|.|.-.+..+|
T Consensus 7 ~v~F~vwAP~A--~~V~L~~~~~-~~~~~~m~~~~~G~W~~~v~~l~~g~Y~Y~~~vdg 62 (85)
T cd02858 7 TVTFRLFAPKA--NEVQVRGSWG-GAGSHPMTKDEAGVWSVTTGPLAPGIYTYSFLVDG 62 (85)
T ss_pred cEEEEEECCCC--CEEEEEeecC-CCccEeCeECCCeEEEEEECCCCCcEEEEEEEECC
Confidence 45777776432 3344444332 22223455667899999885567888887777776
No 40
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=72.05 E-value=26 Score=24.12 Aligned_cols=47 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCeeeEE--EeCCCCcceeEEEECCCC-EEEEEEeeCCCeeEEEEEEECcc
Q psy5367 151 GPGELSAH--CVGPNKVAYCELYDHSDG-TFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 151 G~g~l~v~--I~gp~g~~~~~v~d~~dg-ty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
|....++. +..+...+.+.|.|...- .+++...+..+|.|.+ .|+|.
T Consensus 10 g~~~~~~~~~l~~~a~~v~v~I~d~~G~~V~t~~~~~~~~G~~~~--~WdG~ 59 (81)
T PF13860_consen 10 GGTKGSIEYTLPEDADNVTVTIYDSNGQVVRTISLGSQSAGEHSF--TWDGK 59 (81)
T ss_dssp TTCEEEEEEEECSSCEEEEEEEEETTS-EEEEEEEEECSSEEEEE--EE-SB
T ss_pred CCEEEEEEEeCCCcccEEEEEEEcCCCCEEEEEEcCCcCCceEEE--EECCC
Confidence 33345555 555555577888886433 3888888999998764 58875
No 41
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=71.90 E-value=7.7 Score=22.29 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=21.8
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
+..+|++..+.+.|++++++-++..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56799999999999999999988554
No 42
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=71.71 E-value=12 Score=37.49 Aligned_cols=46 Identities=24% Similarity=0.259 Sum_probs=35.7
Q ss_pred eeeEEEeCCCCc-ceeEEEECC--------CCEEEEEEee-CCCeeEEEEEEECcc
Q psy5367 154 ELSAHCVGPNKV-AYCELYDHS--------DGTFTLNVKP-QESGRHVLTVKYGDL 199 (201)
Q Consensus 154 ~l~v~I~gp~g~-~~~~v~d~~--------dgty~v~y~P-~~~G~y~i~V~~~g~ 199 (201)
.+.+.|..|+|. +..++.|++ ||+|.--|+. ...|.|.|.|...|.
T Consensus 628 ~Vta~i~~~~g~~~~l~l~DnGaGaD~~knDGIYS~yft~f~~nGrYsl~V~v~~~ 683 (863)
T TIGR00868 628 NVTALIESENGHTVTLELLDNGAGADTVKNDGIYSRYFTAYDGNGRYSLKVRALGG 683 (863)
T ss_pred EEEEEEECCCCCEEEEEEeecCCCCCccccCceeeeeeecccCCceEEEEEEEeCC
Confidence 445567778874 557777766 7999988887 678999999998775
No 43
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=71.31 E-value=9 Score=24.49 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=21.6
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.-..+|.|.+++.....|.|.|.|+.-+.
T Consensus 7 t~~~~G~Ws~t~~~~~dG~y~itv~a~D~ 35 (54)
T PF13754_consen 7 TVDSDGNWSFTVPALADGTYTITVTATDA 35 (54)
T ss_pred EECCCCcEEEeCCCCCCccEEEEEEEEeC
Confidence 34677888888766678999888876543
No 44
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.51 E-value=11 Score=18.81 Aligned_cols=29 Identities=14% Similarity=0.080 Sum_probs=23.9
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCC
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGV 38 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~ 38 (201)
+..+|.+..+.++|++.+.+.++.++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 45678888899999999999988887644
No 45
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=70.23 E-value=26 Score=29.35 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=30.4
Q ss_pred ceeEEeeccCCCCCeeeEEEeCCCCc-ce-eEEEECCCCEEEEEE-------eeCCCeeEEEEEE
Q psy5367 140 DIRSFIDTRRAGPGELSAHCVGPNKV-AY-CELYDHSDGTFTLNV-------KPQESGRHVLTVK 195 (201)
Q Consensus 140 ~~~f~Vdt~~aG~g~l~v~I~gp~g~-~~-~~v~d~~dgty~v~y-------~P~~~G~y~i~V~ 195 (201)
...|.++.. .+...+.+.|.+.+|. ++ ..+-....|.+.++| .|..+|.|++.|.
T Consensus 114 ~~~~~~~l~-~~a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~ 177 (225)
T PRK06655 114 TTPFGVELP-SAADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKAS 177 (225)
T ss_pred ceEEEEEcC-CCCcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEE
Confidence 344444432 1344577777777775 22 222234566666666 3456677777774
No 46
>PF13715 DUF4480: Domain of unknown function (DUF4480)
Probab=69.97 E-value=32 Score=23.44 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=16.6
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.-+.+|.|.+. .| +|.|.|.+.+-|.
T Consensus 30 ~Td~~G~F~i~-~~--~g~~~l~is~~Gy 55 (88)
T PF13715_consen 30 VTDENGRFSIK-LP--EGDYTLKISYIGY 55 (88)
T ss_pred EECCCeEEEEE-Ec--CCCeEEEEEEeCE
Confidence 34556777777 44 5667777766554
No 47
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=69.48 E-value=26 Score=34.10 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=36.9
Q ss_pred cceeCCceeEEeeccCCCCCeeeEE-EeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 134 VGTLGQDIRSFIDTRRAGPGELSAH-CVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 134 ~~~vg~~~~f~Vdt~~aG~g~l~v~-I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
.-.+|++..+.+.+.+ +..+... +.--+|.. ++-++-... -.++|+|.++|.|+|.|...+
T Consensus 397 ~~lvG~~i~i~v~a~g--g~~~lY~f~ik~ng~~-ve~~~Y~~~-~~~~f~P~~~G~Y~IeV~vKd 458 (667)
T PRK14081 397 HILKGEEIKIRVIAEG--GTNLRYSFIIKKDGKE-EEKIDYGKN-NWVNFIPEEKGNYELEVRVKD 458 (667)
T ss_pred ceEeCCeEEEEEEecC--CCeEEEEEEEEECCEE-EEEeecccc-cEEEEEECCCeeEEEEEEEec
Confidence 4467777777777653 2333333 33334421 222333332 568999999999999998754
No 48
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.85 E-value=35 Score=23.67 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=20.5
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
.++-+|--+++.|||++.+.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 466777788888999988876666665
No 49
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=67.11 E-value=32 Score=29.54 Aligned_cols=56 Identities=16% Similarity=0.133 Sum_probs=35.0
Q ss_pred ceeEEeeccCCCCCeeeEEEeCCCCcc-e-eEEEECCCCEEEEEEee-------CCCeeEEEEEEE
Q psy5367 140 DIRSFIDTRRAGPGELSAHCVGPNKVA-Y-CELYDHSDGTFTLNVKP-------QESGRHVLTVKY 196 (201)
Q Consensus 140 ~~~f~Vdt~~aG~g~l~v~I~gp~g~~-~-~~v~d~~dgty~v~y~P-------~~~G~y~i~V~~ 196 (201)
...|.++.- .....+++.|...+|.+ + ..+-+..-|.+.++|-. ..+|.|++.|..
T Consensus 129 ~~~~~~~l~-~~a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 129 LIALKLYFP-EDSDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred eeEEEEecC-CcCceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 455555542 24456888888888752 2 23334556778888855 346888888864
No 50
>KOG1692|consensus
Probab=66.71 E-value=32 Score=28.26 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=27.5
Q ss_pred ccceEEEecccCCCccceeeCCCCCcceeCCc--eeEEeeccCCCCCeeeEEEeCCCCc
Q psy5367 109 GCPLKVLVSAVCDATQVLCSGSGLSVGTLGQD--IRSFIDTRRAGPGELSAHCVGPNKV 165 (201)
Q Consensus 109 gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~--~~f~Vdt~~aG~g~l~v~I~gp~g~ 165 (201)
.+-|.+.+ ..+...|+..- +.. |.. .+|.|.. .|...+.+.|.||.|.
T Consensus 18 ~~~~~is~--~ah~eeCf~e~--~~~---gd~~~vsF~v~~--gg~~~vd~~I~gP~~~ 67 (201)
T KOG1692|consen 18 AAGYGISL--DAHEEECFFEN--LEE---GDKLSVSFEVID--GGFLGVDVEITGPDGK 67 (201)
T ss_pred hhheeEEE--ccchhhhHhhh--hcc---CCEEEEEEEEec--CCccceeEEEECCCCc
Confidence 34445555 24556666532 332 222 2454443 3777889999999984
No 51
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=66.28 E-value=12 Score=23.79 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=21.4
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCC
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGV 38 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~ 38 (201)
+-+..++.+..+.++|++.+.+.+++++.+|
T Consensus 32 ~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 32 EAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 4456777777777888887777777776654
No 52
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=66.19 E-value=15 Score=23.42 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=24.6
Q ss_pred HHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 12 QRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 12 ~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
.+|++.-+.++|++.++..+++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 29 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD 29 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4688899999999999999999987654
No 53
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=65.15 E-value=34 Score=28.51 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCeeeEEEeCCCCcceeEEE--ECCCCEEEEEEee----CCCeeEEEEEE
Q psy5367 152 PGELSAHCVGPNKVAYCELY--DHSDGTFTLNVKP----QESGRHVLTVK 195 (201)
Q Consensus 152 ~g~l~v~I~gp~g~~~~~v~--d~~dgty~v~y~P----~~~G~y~i~V~ 195 (201)
...+++.|.+.+|.+ .++. ...-|.+.++|-+ -.+|.|++.|.
T Consensus 122 a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~ 170 (218)
T PRK09619 122 APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVV 170 (218)
T ss_pred CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEE
Confidence 345666777666654 2221 2344666666655 45677777775
No 54
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=64.34 E-value=14 Score=23.70 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=28.0
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
+-+..+|.++-+.++|++++.+.++.++.+|.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~ 35 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN 35 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34667899999999999999999999998765
No 55
>KOG1693|consensus
Probab=63.91 E-value=51 Score=27.26 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=45.9
Q ss_pred ccceEEEecccCCCccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCe
Q psy5367 109 GCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESG 188 (201)
Q Consensus 109 gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G 188 (201)
-+|+++.. +..+..|.+.- +....-.--.+|.|.+. |.=++...|..|+|.+ =..+.+.--=.+.|+....|
T Consensus 21 a~elTfeL--p~~aKqC~Y~d--~~~~~~~~~~~fqV~tG--G~fDVD~~I~aPdgkv--I~~~~kk~~~~~~f~ae~~G 92 (209)
T KOG1693|consen 21 ASELTFEL--PDNAKQCFYED--LKKDDDTTSFEFQVQTG--GHFDVDYDIEAPDGKV--IYSEKKKRYDSFLFKAEGKG 92 (209)
T ss_pred cccEEEEc--CCcchhheeee--cccCCceEEEEEEEEeC--CceeeEEEEECCCCCE--EeeccccccccEEEEEecce
Confidence 56888876 35667788764 22211111235566663 5556777899999952 11222222335678888888
Q ss_pred eEEEE
Q psy5367 189 RHVLT 193 (201)
Q Consensus 189 ~y~i~ 193 (201)
.|+..
T Consensus 93 ~Y~fC 97 (209)
T KOG1693|consen 93 EYTFC 97 (209)
T ss_pred EEEEE
Confidence 88765
No 56
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=61.55 E-value=53 Score=27.53 Aligned_cols=55 Identities=9% Similarity=-0.004 Sum_probs=31.7
Q ss_pred ceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEe-------eCCCeeEEEEEEE
Q psy5367 140 DIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVK-------PQESGRHVLTVKY 196 (201)
Q Consensus 140 ~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~-------P~~~G~y~i~V~~ 196 (201)
...|.+... .....+.+.|.+.+|.+- +-.+..-|.+.++|- |..+|.|++.|..
T Consensus 112 ~~~~~~~l~-~~a~~v~v~I~D~~G~vV-~t~~~~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A 173 (223)
T PRK12813 112 PVTISPNPA-ADADKAELVVRDAAGAEV-ARETVPVGAGPVEWAGEDADGNPLPNGAYSFVVES 173 (223)
T ss_pred eeEEEEecc-CCCceEEEEEEcCCCCEE-EEEeeCCCceeEEeCCcCCCCCcCCCccEEEEEEE
Confidence 444444432 245567788888887531 112334566667775 3456888888765
No 57
>KOG4088|consensus
Probab=60.34 E-value=49 Score=25.94 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=32.5
Q ss_pred ceeEEeeccC-CCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeC--CCeeEEEEEEECcc
Q psy5367 140 DIRSFIDTRR-AGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQ--ESGRHVLTVKYGDL 199 (201)
Q Consensus 140 ~~~f~Vdt~~-aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~--~~G~y~i~V~~~g~ 199 (201)
-.+|++.|++ +-+-.+.+.+- .+.+|+...+.- +.|.|+|+-. ..|.-+++|++.++
T Consensus 44 i~EftLqCsn~~~n~~l~Aev~--Gk~~PVs~~~d~-~kyQVSW~ldhK~a~agt~~vr~FDE 103 (167)
T KOG4088|consen 44 ITEFTLQCSNNPKNIQLTAEVN--GKLIPVSISDDT-AKYQVSWTLDHKDAGAGTFNVRIFDE 103 (167)
T ss_pred EEEEEEEeCCCCcceEEEEecC--CEEEeEEecCcc-ceEEEEEEEeecccCCceEEEEEeCc
Confidence 3488888886 33444545443 233555543322 6799999874 34444555555544
No 58
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=59.12 E-value=47 Score=26.75 Aligned_cols=58 Identities=16% Similarity=0.238 Sum_probs=38.2
Q ss_pred eeCCceeEEeeccCCCCCeeeEEEeCCCCcceeE-EEECCCCEEEEEEe-eCCCeeEEEEEE
Q psy5367 136 TLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCE-LYDHSDGTFTLNVK-PQESGRHVLTVK 195 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~-v~d~~dgty~v~y~-P~~~G~y~i~V~ 195 (201)
.+|..+.|.|.-... ....+.+.+|+|..+.. ..|....+..+.-. ..++|.+++.|.
T Consensus 26 tvG~~T~f~v~w~~~--~~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~ 85 (179)
T PF09315_consen 26 TVGNNTVFTVTWQNS--SPPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSIT 85 (179)
T ss_pred CCCCCeEEEEEECCC--CCceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEe
Confidence 478888888876543 56788899999976555 34544455555541 156777777663
No 59
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=58.79 E-value=45 Score=32.48 Aligned_cols=62 Identities=18% Similarity=0.099 Sum_probs=39.9
Q ss_pred cceeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 134 VGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 134 ~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
...+|.+..|.+.+.+ |.+.+---..--+|.. +++++-.... ..+|+|..+|.|+|-|.-.+
T Consensus 493 ~~~vg~~i~~~~~~~~-~k~v~y~y~~~~NG~~-v~~t~Ys~~~-~ysf~P~~~GkY~I~V~aKn 554 (667)
T PRK14081 493 YYLVGDDIEIEVIIQN-TKDVLIKYILKINGHK-VEETDYIKNK-KYKFIPKCSGKYTIEVLAKN 554 (667)
T ss_pred cEEeCCEEEEEEEEeC-CCeEEEEEEEEECCEE-EEEeeccccc-eEEEeecCCceEEEEEEEcc
Confidence 3478889999988864 3333322344444532 4556654442 34788999999999987543
No 60
>KOG1953|consensus
Probab=58.18 E-value=2.2e+02 Score=29.36 Aligned_cols=50 Identities=16% Similarity=0.169 Sum_probs=35.4
Q ss_pred HhHHHHHhhhhcccchhhHHHHhhHhhhhc---cchHHHHHHHHHHHHHHH-HHHH
Q psy5367 45 RNLLSVAYKNVVGARRSSWRVISSIEQKTE---GSERKQQMAREYREKVEK-ELRD 96 (201)
Q Consensus 45 RnLlsvayKn~i~~~R~swR~i~~~e~~~~---~~~~~~~~i~~yr~kIe~-EL~~ 96 (201)
+-++++| +-+|.+|++||.++-+-++-- ....+-.+.++|++..-. +...
T Consensus 566 ~eii~~a--~ragd~~aa~~~~s~Ll~~yypll~sS~q~~Lfk~l~n~~~~~~s~t 619 (1235)
T KOG1953|consen 566 NEIISLA--DRAGDYRAALLLISLLLLTYYPLLSSSQQISLFKALRNTYLFASSAT 619 (1235)
T ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHhHHhhccccc
Confidence 3467777 778999999999998877631 334566788888887643 4444
No 61
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=58.15 E-value=57 Score=25.22 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=18.3
Q ss_pred CCCEEEEEEeeCCCeeEEEEEE
Q psy5367 174 SDGTFTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 174 ~dgty~v~y~P~~~G~y~i~V~ 195 (201)
.+.+.+++|+|..||.|.....
T Consensus 98 pGet~TitF~adKpG~Y~y~C~ 119 (135)
T TIGR03096 98 AGETKTISFKADKAGAFTIWCQ 119 (135)
T ss_pred CCCeEEEEEECCCCEEEEEeCC
Confidence 3578999999999999987644
No 62
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=58.11 E-value=69 Score=24.86 Aligned_cols=44 Identities=18% Similarity=0.276 Sum_probs=29.4
Q ss_pred CCCeeeEEEeCCCCc--ceeEEEECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 151 GPGELSAHCVGPNKV--AYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 151 G~g~l~v~I~gp~g~--~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
|.|.|+. .+|. .|-+.....+++|++-||..+....+|.|.+-+
T Consensus 76 GkG~L~~----~~g~~~~pND~Y~L~~~~FRLYYTS~s~~~q~idv~veD 121 (137)
T PF12988_consen 76 GKGTLRM----DDGTVLLPNDRYPLEKEVFRLYYTSRSDDQQTIDVYVED 121 (137)
T ss_dssp S-EEEEE----TTS-EE-TTSEEE-S-SEEEEEEEE-SSS-EEEEEEEEE
T ss_pred CCEEEEe----cCCcEeccccceecCcCEEEEEEecCCCCCceeEEEEEe
Confidence 6677643 4443 567788888999999999999999999998753
No 63
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=58.08 E-value=13 Score=29.39 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcc
Q psy5367 25 DMAAAMKAVTETGVELSNEERNLLSVAYKNVVG 57 (201)
Q Consensus 25 dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~ 57 (201)
..+++.+++++...+||.+|++.|.-+..+++-
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~ 115 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTK 115 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhh
Confidence 447777888888899999999999887766543
No 64
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=55.45 E-value=48 Score=22.25 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.7
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
+++-.|--+++.+.|++.+.+.+..++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466677778889999999999988886
No 65
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=54.88 E-value=20 Score=23.43 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=17.4
Q ss_pred EEEEeeCCCeeEEEEEEECcc
Q psy5367 179 TLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 179 ~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.++|+...||.|.|.++..+.
T Consensus 43 ~~t~ty~~~G~y~V~ltv~n~ 63 (69)
T PF00801_consen 43 SVTHTYSSPGTYTVTLTVTNG 63 (69)
T ss_dssp EEEEEESSSEEEEEEEEEEET
T ss_pred CEEEEcCCCeEEEEEEEEEEC
Confidence 567888999999999987653
No 66
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=54.68 E-value=68 Score=22.07 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=23.1
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
-+++-.|--++++++|++.+.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888889999999999987777665
No 67
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=54.28 E-value=41 Score=22.56 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.6
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
-+++..|--++++|+|++.+.+.+..++
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4577788888999999999999988876
No 68
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=53.17 E-value=4.5 Score=31.28 Aligned_cols=43 Identities=9% Similarity=0.135 Sum_probs=0.0
Q ss_pred CCeeeEEEeCCCC--cceeEEEECCCCEEEEEEeeCCCeeEEEEEE
Q psy5367 152 PGELSAHCVGPNK--VAYCELYDHSDGTFTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 152 ~g~l~v~I~gp~g--~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~ 195 (201)
...+.+.|.+|++ .....= ......-.++|++.++|.|.+.+.
T Consensus 36 ~~~v~~~i~~~~~~~~~i~~~-~~~~~~~~f~f~~~~~G~y~iCf~ 80 (183)
T PF01105_consen 36 AYDVDFTIRDPDPNGEVIYSK-SDKESEGSFSFTAKESGEYQICFD 80 (183)
T ss_dssp ----------------------------------------------
T ss_pred cceEEEEEEecccCCceeeee-cccccCCcEEEEeccCCCEEEEEE
Confidence 5788999995554 321111 111111255577788888887654
No 69
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=53.06 E-value=39 Score=23.56 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhc
Q psy5367 21 ERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVV 56 (201)
Q Consensus 21 ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i 56 (201)
++|+.++++++.+-.. ..++.+++-.|---||.+.
T Consensus 3 ~~F~~A~~~v~~~~~~-~~~~~~~~L~LYalyKQAt 37 (87)
T PF00887_consen 3 EEFEAAVEFVSNLPKK-SQLSNDDKLELYALYKQAT 37 (87)
T ss_dssp HHHHHHHHHHHHSSSC-STS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccc-CCCCHHHHHHHHHHHHHHH
Confidence 4678888888775433 5899999999999999887
No 70
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=52.96 E-value=27 Score=22.54 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=20.8
Q ss_pred HHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 14 AKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 14 aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
+.++-+.++|+++++++..+++.+|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD 27 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc
Confidence 45667788888888888888888766
No 71
>PF07563 DUF1541: Protein of unknown function (DUF1541); InterPro: IPR011438 This domain is found in several hypothetical bacterial proteins as a tandem repeat.; PDB: 2KY9_A 4FIB_B.
Probab=52.76 E-value=28 Score=22.58 Aligned_cols=20 Identities=20% Similarity=0.502 Sum_probs=13.6
Q ss_pred EEEEEEeeCCCeeEEEEEEE
Q psy5367 177 TFTLNVKPQESGRHVLTVKY 196 (201)
Q Consensus 177 ty~v~y~P~~~G~y~i~V~~ 196 (201)
.|.|.|+|+.-|.-.-+=+|
T Consensus 31 vY~V~ytPt~gg~~v~nHKW 50 (53)
T PF07563_consen 31 VYMVDYTPTTGGEKVKNHKW 50 (53)
T ss_dssp EEEEEEE-TTT-SEEEEEEE
T ss_pred EEEEEEEECCCCcEeeeeee
Confidence 49999999999975555444
No 72
>TIGR02756 TraK_Ftype type-F conjugative transfer system secretin TraK. The TraK protein is predicted to interact with the TraV and TraB proteins as part of the scaffold which extends from the inner membrane, through the periplasm to the cell envelope and through which the F-type conjugative pilus passes. TraK is homologous to the P-type IV secretion system protein TrbG, the Ti-type protein VirB9 and the I-type TraN protein. The protein is related to the secretin family especially the HrcC subgroup of the type III secretion system. The protein is hypothesized to oligomerize to form a ring structure akin to other secretins.
Probab=51.88 E-value=1.2e+02 Score=25.39 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=50.8
Q ss_pred cccceEEEecccCCCccceeeCCCCCcceeCCc-eeEEe--eccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEee
Q psy5367 108 KGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQD-IRSFI--DTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKP 184 (201)
Q Consensus 108 ~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~-~~f~V--dt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P 184 (201)
+|..+.+.++ ..||++..+-|..+.... .| ..|.+ ..++...|.+-+.+.. ..+.-.-++..+.-+|.+.-+|
T Consensus 26 ~~~~v~~~lS-~~~~Nri~v~gd~I~~v~--~p~~g~~~~~~~~~~~~G~i~v~~~~-~~pfTlfvtTekG~~~sl~l~P 101 (232)
T TIGR02756 26 NGEDIAIALS-STDPNRLVVEGDRITAVS--FPENGMLVSKGTEDDTTGSVVVKPVA-KKPFTFYLTTEKGLHFSVRIVP 101 (232)
T ss_pred CCCeEEEEEe-cCCCcEEEccCCceeEee--cCCCCcEEecCcCCCCCceEEEEcCC-CCCEEEEEECCCCCEEEEEEec
Confidence 4677777775 489999998887777632 34 56666 4445556777666542 3334344555555589999999
Q ss_pred CC-Cee
Q psy5367 185 QE-SGR 189 (201)
Q Consensus 185 ~~-~G~ 189 (201)
.. ||.
T Consensus 102 ~~~~g~ 107 (232)
T TIGR02756 102 RAIAGK 107 (232)
T ss_pred ccCCCc
Confidence 76 555
No 73
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=51.12 E-value=26 Score=22.37 Aligned_cols=30 Identities=3% Similarity=0.007 Sum_probs=25.5
Q ss_pred HHHHHHHhHHHhc-cHHHHHHHHHHHHhcCC
Q psy5367 9 ELVQRAKLAEQAE-RYDDMAAAMKAVTETGV 38 (201)
Q Consensus 9 ~~~~~aklae~~e-ry~dm~~~mk~~~~~~~ 38 (201)
=+..++.+..+.+ +|++.++++++.++++|
T Consensus 39 ~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 39 AYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888888 89999999999998765
No 74
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=50.58 E-value=86 Score=25.97 Aligned_cols=81 Identities=21% Similarity=0.282 Sum_probs=46.1
Q ss_pred HHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhccchHHHHHHHHHHHHHH
Q psy5367 12 QRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAREYREKVE 91 (201)
Q Consensus 12 ~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~~~~~~~~~i~~yr~kIe 91 (201)
|+++|..+..||+-|-.....-+ +..++|-.-+-..++.-+-..++.+|.-..--+ +....+ +-+.+=-
T Consensus 123 y~~~l~~~eqry~aLK~hAeekL----~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~-----SLe~~L--eQK~kEn 191 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEEKL----EKANEEIAQVRSKHQAELLALQASLKKEEMKVQ-----SLEESL--EQKTKEN 191 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHH--HHHHHHH
Confidence 77888888888876654443322 344555555666666666677777776421000 000001 1222223
Q ss_pred HHHHHhhhhhhh
Q psy5367 92 KELRDICYDVLK 103 (201)
Q Consensus 92 ~EL~~iC~eil~ 103 (201)
.||..||+|+|.
T Consensus 192 ~ELtkICDeLI~ 203 (207)
T PF05010_consen 192 EELTKICDELIS 203 (207)
T ss_pred HHHHHHHHHHHH
Confidence 689999999885
No 75
>PF07523 Big_3: Bacterial Ig-like domain (group 3); InterPro: IPR011080 This entry represents bacterial domains with an Ig-like fold. These domains are found in a variety of bacterial surface proteins.; PDB: 2L7Y_A 2KPN_A.
Probab=49.90 E-value=20 Score=23.57 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=14.5
Q ss_pred CEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 176 GTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 176 gty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
-+....|-...+|.|.|.++|.|.
T Consensus 36 ~~vs~~~d~~~~G~y~Vt~~y~~~ 59 (67)
T PF07523_consen 36 VTVSGTVDTSKAGTYTVTYTYKGV 59 (67)
T ss_dssp SEEES---TTS-CCEEEEEEECTE
T ss_pred eEEEeeeecCCCceEEEEEEECCE
Confidence 334436678888999999988873
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=49.58 E-value=32 Score=22.18 Aligned_cols=30 Identities=23% Similarity=0.265 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGV 38 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~ 38 (201)
-+..+|.+..+.++|++.++.+.++++.+|
T Consensus 31 ~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 31 LWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 456799999999999999999999998766
No 77
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=48.52 E-value=29 Score=22.81 Aligned_cols=27 Identities=15% Similarity=0.225 Sum_probs=23.1
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhc
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTET 36 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~ 36 (201)
+..+|.+....++|++.+++.++.+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~ 34 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDI 34 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 457888999999999999999999876
No 78
>KOG1948|consensus
Probab=47.66 E-value=1.2e+02 Score=30.90 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=49.6
Q ss_pred eEEEeccc----CCCccceeeCCCCCcc-eeCCceeEEe-----ecc---CC--CCCeeeEEEeCCCCcceeEEEECCCC
Q psy5367 112 LKVLVSAV----CDATQVLCSGSGLSVG-TLGQDIRSFI-----DTR---RA--GPGELSAHCVGPNKVAYCELYDHSDG 176 (201)
Q Consensus 112 f~v~v~~~----~Daskv~~~G~GL~~~-~vg~~~~f~V-----dt~---~a--G~g~l~v~I~gp~g~~~~~v~d~~dg 176 (201)
|.+.|.++ ..|.+|.+.=.|.... ..|++..|.. ..+ .+ |+..+.|+.....+++ .......+|
T Consensus 78 yiLkIspP~GwsfePd~Vel~vDGktd~Cs~n~DinFhftGFsv~GkVlgaaggGpagV~velrs~e~~i-ast~T~~~G 156 (1165)
T KOG1948|consen 78 YILKISPPAGWSFEPDSVELKVDGKTDACSLNEDINFHFTGFSVRGKVLGAAGGGPAGVLVELRSQEDPI-ASTKTEDGG 156 (1165)
T ss_pred EEEEecCCCCccccCceEEEEeccccccccCCCceEEEEeeeeEeeEEeeccCCCcccceeecccccCcc-eeeEecCCC
Confidence 55666543 6788888887777764 6667765543 222 12 3334555555554444 334456678
Q ss_pred EEEEEEeeCCCeeEEEEE
Q psy5367 177 TFTLNVKPQESGRHVLTV 194 (201)
Q Consensus 177 ty~v~y~P~~~G~y~i~V 194 (201)
.|. |+|.-||+|.|..
T Consensus 157 ky~--f~~iiPG~Yev~a 172 (1165)
T KOG1948|consen 157 KYE--FRNIIPGKYEVSA 172 (1165)
T ss_pred eEE--EEecCCCceEEec
Confidence 885 7788899999864
No 79
>KOG1690|consensus
Probab=47.66 E-value=50 Score=27.38 Aligned_cols=87 Identities=9% Similarity=0.067 Sum_probs=47.3
Q ss_pred ccccccceEEEecccCCCccceeeCCCCCccee-CC--ceeEEeeccC----CCCCeeeEEEeCCCCcceeEEEECCCCE
Q psy5367 105 SQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTL-GQ--DIRSFIDTRR----AGPGELSAHCVGPNKVAYCELYDHSDGT 177 (201)
Q Consensus 105 ~~i~gSPf~v~v~~~~Daskv~~~G~GL~~~~v-g~--~~~f~Vdt~~----aG~g~l~v~I~gp~g~~~~~v~d~~dgt 177 (201)
+....+-|..... .-..||++.- |..+.+ -+ .+..+.+-.+ ...-.+.|.|..|-..-..-+......+
T Consensus 14 l~~~~~a~yFy~~--~~e~KCF~ee--lpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~ 89 (215)
T KOG1690|consen 14 LATQVQALYFYIA--GTEKKCFIEE--LPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSE 89 (215)
T ss_pred HHhhccEEEEEec--CCcccchhhh--CCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCC
Confidence 3445566666663 3456787754 554422 22 2233332221 2233467777777664222222233334
Q ss_pred EEEEEeeCCCeeEEEEEE
Q psy5367 178 FTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 178 y~v~y~P~~~G~y~i~V~ 195 (201)
=.++|+...||.|.|.+.
T Consensus 90 G~ftFta~~~GeH~IC~~ 107 (215)
T KOG1690|consen 90 GDFTFTALTPGEHRICIQ 107 (215)
T ss_pred CceEEEccCCCceEEEEe
Confidence 578899999999998875
No 80
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=47.60 E-value=90 Score=26.04 Aligned_cols=45 Identities=11% Similarity=0.119 Sum_probs=31.5
Q ss_pred CCeeeEEEeCCCCc-ce-eEEEECCCCEEEEEEeeC-------CCeeEEEEEEE
Q psy5367 152 PGELSAHCVGPNKV-AY-CELYDHSDGTFTLNVKPQ-------ESGRHVLTVKY 196 (201)
Q Consensus 152 ~g~l~v~I~gp~g~-~~-~~v~d~~dgty~v~y~P~-------~~G~y~i~V~~ 196 (201)
.+.+.+.|.+.+|. ++ ..+-...-|.+.++|-+. .+|.|++.|..
T Consensus 121 a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a 174 (221)
T PRK12634 121 AGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQ 174 (221)
T ss_pred CCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 46788888888886 22 333345668888888663 46899998864
No 81
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=46.94 E-value=83 Score=26.37 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=34.5
Q ss_pred ceeEEeeccCCCCCeeeEEEeCCCCcc-e-eEEEECCCCEEEEEEeeC-------CCeeEEEEEEE
Q psy5367 140 DIRSFIDTRRAGPGELSAHCVGPNKVA-Y-CELYDHSDGTFTLNVKPQ-------ESGRHVLTVKY 196 (201)
Q Consensus 140 ~~~f~Vdt~~aG~g~l~v~I~gp~g~~-~-~~v~d~~dgty~v~y~P~-------~~G~y~i~V~~ 196 (201)
...|.+.. ..+...+++.|.+.+|.+ + .++-...-|.+.++|-+. .+|.|++.|..
T Consensus 117 ~~~~~~~l-~~~a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a 181 (230)
T PRK12633 117 ATPFGIDL-QGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSA 181 (230)
T ss_pred ceeEEEec-CCcCcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 33444443 224556888888888853 2 233345667788888663 56888888864
No 82
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=45.89 E-value=30 Score=31.92 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=44.6
Q ss_pred cHHHHHHHHHhHH-HhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHh------------hhhcccchhhHHHHhhHhhh
Q psy5367 6 EKEELVQRAKLAE-QAERYDDMAAAMKAVTETGVELSNEERNLLSVAY------------KNVVGARRSSWRVISSIEQK 72 (201)
Q Consensus 6 ~r~~~~~~aklae-~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvay------------Kn~i~~~R~swR~i~~~e~~ 72 (201)
.|++.-..|+-.- .--||.|+-+.+. ++-+||.++|.+|..|= -.+-.+..-.|++|+..-..
T Consensus 341 t~~~h~~~a~~l~~~~a~y~e~~dli~----iG~eLs~~d~~~l~~~~~~e~~~~~~g~~~~~~etl~~~~~~l~~~~~~ 416 (436)
T PRK02118 341 TREDHGDLMNAMIRLYADSREAKEKMA----MGFKLSNWDEKLLKFSELFESRLMDLEVNIPLEEALDLGWKILAQCFHP 416 (436)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhcCHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHHHHCCHH
Confidence 4555555554333 3378888665433 35699999999988873 23334455677777543322
Q ss_pred hccchHHHHHHHHHHH
Q psy5367 73 TEGSERKQQMAREYRE 88 (201)
Q Consensus 73 ~~~~~~~~~~i~~yr~ 88 (201)
+.. --+.++|++|.+
T Consensus 417 ~~~-~~~~~~~~~~~~ 431 (436)
T PRK02118 417 EEV-GIKEQLIDKYWP 431 (436)
T ss_pred HHh-cCCHHHHHHhhc
Confidence 211 123346666655
No 83
>PF12863 DUF3821: Domain of unknown function (DUF3821); InterPro: IPR024277 This is a domain largely confined to sequences from Methanomicrobiales. It is found in putative lipases but the function is unknown.
Probab=45.84 E-value=1.3e+02 Score=25.02 Aligned_cols=39 Identities=23% Similarity=0.431 Sum_probs=28.5
Q ss_pred eeCCceeEEeeccC--------CCC--CeeeEEEeCCCCcceeEEEECC
Q psy5367 136 TLGQDIRSFIDTRR--------AGP--GELSAHCVGPNKVAYCELYDHS 174 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~--------aG~--g~l~v~I~gp~g~~~~~v~d~~ 174 (201)
..|....|.|++-= .++ +.+.+.|.+|+|..+..+.+..
T Consensus 103 ~~G~~v~FrI~tNL~~~~~R~g~~~~~~~v~I~V~~P~G~~~t~L~~~~ 151 (209)
T PF12863_consen 103 PRGDNVNFRIDTNLYSIFQRGGYTPGDGPVDIKVTTPSGATYTSLFGPN 151 (209)
T ss_pred ccCCeEEEEEcccHHHHhhcCCCCCCcceEEEEEeCCCCcEEEEEEcCC
Confidence 55777899997731 122 3399999999998888887774
No 84
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=45.40 E-value=1e+02 Score=21.49 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=35.1
Q ss_pred eeCCceeEEeeccCCCCCeeeEEEeCCCC-cceeE-------EEECCCCEEEEEEe-eCCCeeEEEEEE
Q psy5367 136 TLGQDIRSFIDTRRAGPGELSAHCVGPNK-VAYCE-------LYDHSDGTFTLNVK-PQESGRHVLTVK 195 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g-~~~~~-------v~d~~dgty~v~y~-P~~~G~y~i~V~ 195 (201)
.+|+.+..+|.-++.|.-..+..+..|+. ..... +......+..|+|. +...|.|.-.+.
T Consensus 17 ~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~ 85 (102)
T PF14874_consen 17 FVGQTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLV 85 (102)
T ss_pred ccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEE
Confidence 45667777777777666666666655551 11112 22233346889999 456687765544
No 85
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=45.27 E-value=1.2e+02 Score=22.25 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=18.5
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEEC
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~ 197 (201)
..-.+|+.+++|.-..||.|.|.|..+
T Consensus 36 ~~~~~~~~~~~f~~lp~G~YAi~v~hD 62 (112)
T PF09912_consen 36 VPAKGGTVTITFEDLPPGTYAIAVFHD 62 (112)
T ss_pred EEcCCCcEEEEECCCCCccEEEEEEEe
Confidence 445557777777666777777777654
No 86
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=44.44 E-value=84 Score=30.54 Aligned_cols=30 Identities=10% Similarity=0.029 Sum_probs=24.7
Q ss_pred HHHHhhhhhhhcccccccceEEEecccCCC
Q psy5367 93 ELRDICYDVLKRSQVKGCPLKVLVSAVCDA 122 (201)
Q Consensus 93 EL~~iC~eil~l~~i~gSPf~v~v~~~~Da 122 (201)
+|..+|.|+.-+..+.++|-.+......+|
T Consensus 562 dL~~ll~e~~~L~e~~~~~i~f~~e~g~ep 591 (712)
T COG5000 562 DLRALLKEVSFLYEIGNDHIVFAAEFGGEP 591 (712)
T ss_pred hHHHHHHHHHHHHhccCCCeEEEeecCCCc
Confidence 889999999999999988888887655543
No 87
>KOG4234|consensus
Probab=43.83 E-value=31 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=26.2
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGV 38 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~ 38 (201)
-|+-+|.+.++.+.|++.++-.|++.+.+|
T Consensus 170 Al~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 170 ALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 356679999999999999999999998755
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=43.65 E-value=50 Score=28.22 Aligned_cols=40 Identities=25% Similarity=0.094 Sum_probs=32.4
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHH
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLL 48 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLl 48 (201)
-+.+++++.++.|+|++.+.+.+++++.++.=..|-|-.+
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4678999999999999999999999988765455555433
No 89
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=41.69 E-value=67 Score=22.16 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=15.8
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcC
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETG 37 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~ 37 (201)
+.-.|....+.++|++.++..+++++..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 32 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY 32 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4445555555566666666666665543
No 90
>PF03404 Mo-co_dimer: Mo-co oxidoreductase dimerisation domain; InterPro: IPR005066 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This domain is found in molybdopterin cofactor oxidoreductases, such as in the C-terminal of Mo-containing sulphite oxidase, which catalyses the conversion of sulphite to sulphate, the terminal step in the oxidative degradation of cysteine and methionine []. This domain is involved in dimer formation, and has an Ig-fold structure [].; GO: 0016491 oxidoreductase activity, 0030151 molybdenum ion binding, 0055114 oxidation-reduction process; PDB: 2C9X_A 2CA3_A 2BLF_A 2CA4_A 2BPB_A 2XTS_C 2BII_A 2BIH_A 1OGP_A 2A9A_B ....
Probab=41.67 E-value=1.5e+02 Score=22.41 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=31.7
Q ss_pred CeeeEEEeCCCCc--ceeEEEECCCC-----------EEEEEEeeCC-CeeEEEEEEEC
Q psy5367 153 GELSAHCVGPNKV--AYCELYDHSDG-----------TFTLNVKPQE-SGRHVLTVKYG 197 (201)
Q Consensus 153 g~l~v~I~gp~g~--~~~~v~d~~dg-----------ty~v~y~P~~-~G~y~i~V~~~ 197 (201)
+-.+|+|.-..|. .++++....+. .+.+.+.+.. +|.|+|.++--
T Consensus 42 ~I~rVEVS~DgG~tW~~A~l~~~~~~~~~g~~~~aW~~W~~~~~~~~~~G~~~i~~RA~ 100 (131)
T PF03404_consen 42 GIARVEVSTDGGKTWQEATLDGPESPPRYGEARWAWRLWEYDWPPPSLPGEYTIMVRAT 100 (131)
T ss_dssp -EEEEEEESSTTSSEEE-EEESTSCCCHHTS-TTS-EEEEEEEEECSHCCEEEEEEEEE
T ss_pred ceEEEEEEeCCCCCcEEeEeccCCCcccccccCcccceeeeccCcCccccceEEEEEEe
Confidence 3567888777775 55666555441 4888898988 99999998743
No 91
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=41.62 E-value=1.3e+02 Score=21.63 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=26.9
Q ss_pred CeeeEEEeCCCCcc--eeEEEECC-CCE---EEEEEeeCCCeeEEEEEEECcc
Q psy5367 153 GELSAHCVGPNKVA--YCELYDHS-DGT---FTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 153 g~l~v~I~gp~g~~--~~~v~d~~-dgt---y~v~y~P~~~G~y~i~V~~~g~ 199 (201)
+.+.+.|-+++|.. .+.+-..+ -.+ ..+.. +..+|.|.|.+.+.+.
T Consensus 60 ~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v-~l~~G~h~i~l~~~~~ 111 (125)
T PF03422_consen 60 GTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSV-KLPAGKHTIYLVFNGG 111 (125)
T ss_dssp EEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEE-EEESEEEEEEEEESSS
T ss_pred cEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEE-eeCCCeeEEEEEEECC
Confidence 67888888877742 23332222 122 23333 3344999999999875
No 92
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=41.10 E-value=1.2e+02 Score=20.82 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=27.8
Q ss_pred CCCCeeeEEEeCCCCcceeEEEEC------CCCEEEEEEeeC------CCeeEEEEEEE
Q psy5367 150 AGPGELSAHCVGPNKVAYCELYDH------SDGTFTLNVKPQ------ESGRHVLTVKY 196 (201)
Q Consensus 150 aG~g~l~v~I~gp~g~~~~~v~d~------~dgty~v~y~P~------~~G~y~i~V~~ 196 (201)
.-.|+|.+.+.+|+|.. ..+.+. ..+.+..+|+.. ..|.++|.|.=
T Consensus 13 ~~~gdL~i~L~SP~Gt~-~~L~~~~~~d~~~~~~~~~~f~~~~f~Ge~~~G~W~L~v~D 70 (87)
T PF01483_consen 13 PYRGDLRITLISPSGTR-STLKDRRGSDDSGSGFLNWTFTSVAFWGESANGTWTLRVTD 70 (87)
T ss_dssp SSGGGEEEEEE-TT--E-EEEE-SSTTHHHSTSEEEEEEEESTTTT-B--EEEEEEEEE
T ss_pred CCcCCEEEEEECCCCCE-EEEECCcCCCcccccccccEEEEEeecCccCCCEEEEEEEE
Confidence 34688999999999963 334332 235677777743 45888888865
No 93
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain III. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active a
Probab=40.80 E-value=1e+02 Score=27.65 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=20.4
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
..+.+|.|... ..||.|+|.|...|.
T Consensus 315 ~T~~~G~y~~~---L~pG~y~v~vs~~Gy 340 (363)
T cd06245 315 YTKEGGYFHVL---LAPGQHNINVIAEGY 340 (363)
T ss_pred EeCCCcEEEEe---cCCceEEEEEEEeCc
Confidence 45568889875 448999999998875
No 94
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=40.71 E-value=86 Score=21.17 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=24.3
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
.+++-.|--.+++|+|++.+.++.+.++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677788888999999999999999886
No 95
>PF12603 DUF3770: Protein of unknown function (DUF3770); InterPro: IPR022531 This family is found in viruses, and is approximately 250 amino acids in length. It is found N-terminal to PF04196 from PFAM in polyproteins.; GO: 0003968 RNA-directed RNA polymerase activity
Probab=40.46 E-value=28 Score=29.68 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=28.0
Q ss_pred cHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHH
Q psy5367 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVA 51 (201)
Q Consensus 6 ~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsva 51 (201)
+=++|+|+=|||-+. +++|-.+.-.+...+.+|+..||.+|.+.
T Consensus 4 evnELvfRfRlA~~I--~ee~k~~~pel~~~Deel~k~erei~~iv 47 (250)
T PF12603_consen 4 EVNELVFRFRLARAI--MEEMKKYYPELSDDDEELSKQEREILGIV 47 (250)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHhccccccchHHHHHhHHHHHhhH
Confidence 347999999999743 23332222222233667888899988873
No 96
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. The N/E subfamily includes eight members, of which five (CPN, CPE, CPM, CPD, CPZ) are considered enzymatically active, while the other three are non-active (CPX1, PCX2, ACLP/AEBP1) and lack the critical active site and substrate-binding residues considered necessary for CP activity. These non-active members may function as binding proteins or display catalytic activity towards other substrates. Unlike the A/B CP subfamily, enzymes belonging to the N/E subfamily are not produced as inactive precursors that require proteolysis to produce the active form; rather, they rely on their substrate specificity and subcellular compartmentalization to prevent inappr
Probab=39.90 E-value=1.2e+02 Score=26.95 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=20.7
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
..+.+|.|.+. . .+|.|+|.|++.|.
T Consensus 327 ~Td~~G~f~~~-l--~~G~y~l~vs~~Gy 352 (374)
T cd03858 327 TTAEDGDYWRL-L--LPGTYNVTASAPGY 352 (374)
T ss_pred EECCCceEEEe-c--CCEeEEEEEEEcCc
Confidence 46678999864 3 49999999999875
No 97
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=39.80 E-value=1.9e+02 Score=24.85 Aligned_cols=44 Identities=23% Similarity=0.202 Sum_probs=24.1
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhh
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYK 53 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayK 53 (201)
.+.+|++..+.++|++.+++++++.+.++....+-.+.|..+|.
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 34556666666666666666666665544333333444444443
No 98
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=39.75 E-value=90 Score=21.31 Aligned_cols=28 Identities=14% Similarity=0.007 Sum_probs=23.5
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
-+|+-.|--.+.+++|++.+.++...++
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677778778889999999999988876
No 99
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=39.69 E-value=42 Score=21.23 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=16.5
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETG 37 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~ 37 (201)
-.+.+|++.-+.++|++..+.++++...+
T Consensus 27 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 27 ARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34456666666666666666666655443
No 100
>PF13115 YtkA: YtkA-like
Probab=39.57 E-value=1.2e+02 Score=20.53 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=18.2
Q ss_pred CEEEEEEeeCCCeeEEEEEEEC
Q psy5367 176 GTFTLNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 176 gty~v~y~P~~~G~y~i~V~~~ 197 (201)
++..+...+..+|.|.+.+.|.
T Consensus 55 ~~~~~~~~~~~~G~Y~~~~~f~ 76 (86)
T PF13115_consen 55 MTSKVELEETGPGVYEAEVTFS 76 (86)
T ss_pred CceeeeeecCCCCeEEEEeecC
Confidence 3677888888999999998874
No 101
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=39.26 E-value=55 Score=21.94 Aligned_cols=23 Identities=13% Similarity=0.180 Sum_probs=14.5
Q ss_pred HHHHHHhHHHhccHHHHHHHHHH
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKA 32 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~ 32 (201)
...+|+...+.++|++.++++++
T Consensus 61 ~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 61 HYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 34457777777777777776654
No 102
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=39.20 E-value=1.1e+02 Score=20.95 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=33.1
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCC--CHHhHhHHHHHhh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGVEL--SNEERNLLSVAYK 53 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L--~~eERnLlsvayK 53 (201)
+-++.++.++.+.++|++.+++.+.++...|.- ..+=...+..+|.
T Consensus 40 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 40 NAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 456789999999999999999999999876543 2333444444443
No 103
>TIGR03517 GldM_gliding gliding motility-associated protein GldM. This protein family, GldM, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile. The best conserved region, toward the N-terminus, is centered on a highly hydrobobic probable transmembrane helix. Two paralogs are found in Cytophaga hutchinsonii.
Probab=39.10 E-value=84 Score=29.78 Aligned_cols=62 Identities=24% Similarity=0.306 Sum_probs=31.0
Q ss_pred CCCccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeC--CCCcceeEEEECCCCEEEEEEeeCCCe
Q psy5367 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVG--PNKVAYCELYDHSDGTFTLNVKPQESG 188 (201)
Q Consensus 120 ~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~g--p~g~~~~~v~d~~dgty~v~y~P~~~G 188 (201)
..++++.++++||... |..-..+|..-.+.+.++.+.+.+ |.|. . -.+.-+|+|.-.|..-|
T Consensus 349 v~~~~v~as~~gl~~~--g~~G~~~i~~p~~~G~~vtI~vsg~~~~~~---~--~~~~~~FrVk~iP~P~~ 412 (523)
T TIGR03517 349 VGANYVTATGAGLKSL--GRGGRVCIAPPSAQGTEATISVTGQLPGGA---R--QIGKYTFRVKAIPDPTP 412 (523)
T ss_pred CCcceEEEEcccceec--CCCCceEEecCCCCceEEEEEEEEEcCCCc---e--eeceeEEEeccCCCCce
Confidence 4455566666665542 212213333322223355555554 2331 1 23445799999888766
No 104
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=38.96 E-value=2.1e+02 Score=26.79 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=34.8
Q ss_pred CCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCC-----EEE--------EEEeeCCCeeEEEEEEEC
Q psy5367 138 GQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDG-----TFT--------LNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 138 g~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dg-----ty~--------v~y~P~~~G~y~i~V~~~ 197 (201)
+....+.+... .|+|.+.+.+.+.-|.. -.+.+.++| ++. +.|.=+.||.|++.+...
T Consensus 122 ~~~v~~~~~~~-~GPG~~~~f~~~~fG~p-~~~~~s~~~~~~~~~~~~~~~tH~H~nWaFt~pG~Y~l~~~a~ 192 (479)
T TIGR03772 122 ASEVHLSATSA-EGPGDATAYITGTFGNP-EIYFDSTDGFDEGDTAMLPPDAHTHMSWAFSKPGIYRLSFAAQ 192 (479)
T ss_pred CCceEEEEeec-CCCceEEEEEecCCCCc-eEEeecCCCCCCCCcEEecCCCccccceecCCCceEEEEEEEE
Confidence 33456655443 48888888887655531 223333321 233 466677899999887765
No 105
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPM is an extracellular glycoprotein, bound to cell membranes via a glycosyl-phosphatidylinositol on the C-terminus of the protein. It specifically removes C-terminal basic residues such as lysine and arginine from peptides and proteins. The highest levels of CPM have been found in human lung and placenta, but significant amounts are present in kidney, blood vessels, intestine, brain, and peripheral nerves. CPM has also been found in soluble form in various body fluids, including amniotic fluid, seminal plasma and urine. Due to its wide distribution in a variety of tissues, it is believed that it plays an important role in the cont
Probab=37.86 E-value=1.5e+02 Score=26.72 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=39.0
Q ss_pred eCCceeEEeeccC-------------------------CCCCeeeEEEeCCCCc-c---ee---------EEEECCCCEE
Q psy5367 137 LGQDIRSFIDTRR-------------------------AGPGELSAHCVGPNKV-A---YC---------ELYDHSDGTF 178 (201)
Q Consensus 137 vg~~~~f~Vdt~~-------------------------aG~g~l~v~I~gp~g~-~---~~---------~v~d~~dgty 178 (201)
.+.+.+|++..+. ...+.++-.|.+.+|. + .+ .+..+.+|.|
T Consensus 254 ~~~~~~~T~El~~~k~p~~~~l~~~w~~n~~~ll~~i~q~~~gI~G~V~D~~g~pi~~A~V~v~g~~~~~~~~T~~~G~y 333 (376)
T cd03866 254 WAQCFEITLELSCCKYPPEEQLPAFWEDNKAALIEYIKQVHLGVKGQVFDSNGNPIPNAIVEVKGRKHICPYRTNVNGEY 333 (376)
T ss_pred hCceEEEEEEecCCCCCCHHHHHHHHHHhHHHHHHHHHHhcCceEEEEECCCCCccCCeEEEEEcCCceeEEEECCCceE
Confidence 3667788887664 1234466667766662 2 22 2345668989
Q ss_pred EEEEeeCCCeeEEEEEEECcc
Q psy5367 179 TLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 179 ~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.. ...||.|+|.|...|.
T Consensus 334 ~~---~l~pG~Y~v~vsa~Gy 351 (376)
T cd03866 334 FL---LLLPGKYMINVTAPGF 351 (376)
T ss_pred EE---ecCCeeEEEEEEeCCc
Confidence 43 3679999999998875
No 106
>KOG2002|consensus
Probab=37.84 E-value=1.5e+02 Score=30.31 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=51.5
Q ss_pred cHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhH
Q psy5367 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSI 69 (201)
Q Consensus 6 ~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~ 69 (201)
+++=+.|+||.+-++++|.+..++........|.=+.=.-|+.-|.+|-.-+.+|.-=|++..+
T Consensus 715 ~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev 778 (1018)
T KOG2002|consen 715 RSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEV 778 (1018)
T ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHH
Confidence 4677889999999999999999999888887776666678888888888877776666655443
No 107
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=37.84 E-value=1.5e+02 Score=21.03 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=23.0
Q ss_pred eEEEECCCCEEEE----EEeeCCCeeEEEEEEECc
Q psy5367 168 CELYDHSDGTFTL----NVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 168 ~~v~d~~dgty~v----~y~P~~~G~y~i~V~~~g 198 (201)
..+..++||||.+ +..|.....|+-.|.-.|
T Consensus 50 ~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~~ 84 (94)
T cd05767 50 TRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHWG 84 (94)
T ss_pred eeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeCC
Confidence 3456789999875 667877677888887655
No 108
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=37.78 E-value=1.1e+02 Score=19.68 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=10.1
Q ss_pred EEECCCCEEEEEEeeCCCe
Q psy5367 170 LYDHSDGTFTLNVKPQESG 188 (201)
Q Consensus 170 v~d~~dgty~v~y~P~~~G 188 (201)
+.+...|+|.|.-+-..+|
T Consensus 31 f~~L~~G~Y~l~E~~aP~G 49 (70)
T PF05738_consen 31 FKNLPPGTYTLKETKAPDG 49 (70)
T ss_dssp EEEEESEEEEEEEEETTTT
T ss_pred EeecCCeEEEEEEEECCCC
Confidence 3344556666666554444
No 109
>PRK02710 plastocyanin; Provisional
Probab=37.63 E-value=1.7e+02 Score=21.60 Aligned_cols=21 Identities=5% Similarity=0.096 Sum_probs=15.5
Q ss_pred CCCCEEEEEEeeCCCeeEEEEEE
Q psy5367 173 HSDGTFTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 173 ~~dgty~v~y~P~~~G~y~i~V~ 195 (201)
..+.+|+++|++ ||.|.....
T Consensus 85 ~pg~t~~~tF~~--~G~y~y~C~ 105 (119)
T PRK02710 85 APGESWEETFSE--AGTYTYYCE 105 (119)
T ss_pred CCCCEEEEEecC--CEEEEEEcC
Confidence 345588888887 999977654
No 110
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=37.61 E-value=1.1e+02 Score=22.11 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=25.5
Q ss_pred CCCeeeEEEeCCCCc-ceeEEEECCCC-EEEEEEeeCCCeeEEEEEEECc
Q psy5367 151 GPGELSAHCVGPNKV-AYCELYDHSDG-TFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 151 G~g~l~v~I~gp~g~-~~~~v~d~~dg-ty~v~y~P~~~G~y~i~V~~~g 198 (201)
.-+.+.+.|.+..|. ++-+...+..+ .+.+.--=..+|.|.|.+.-+.
T Consensus 46 ~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~ 95 (106)
T PF11589_consen 46 PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGN 95 (106)
T ss_dssp --SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECT
T ss_pred CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCC
Confidence 345677777776664 55444444322 4555554456788888877653
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=37.46 E-value=63 Score=26.03 Aligned_cols=74 Identities=9% Similarity=-0.015 Sum_probs=44.4
Q ss_pred HHHHHHHHh-HHHhcc--HHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhccchHHHHHH
Q psy5367 8 EELVQRAKL-AEQAER--YDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMA 83 (201)
Q Consensus 8 ~~~~~~akl-ae~~er--y~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~~~~~~~~~i 83 (201)
+-+..+|.+ +.+.++ +++..+.+.++++.+|. ..+=+.+|..+|-. .|....|........+....++....+|
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 345666774 567777 58999999998888776 34556666666643 4555555555444333322233445555
No 112
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=37.46 E-value=1.4e+02 Score=25.77 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=33.8
Q ss_pred eEEeeccCCCCCe-eeEEEeCCCCcceeEEEECCCCEEEEEEeeC---CCeeEEEEEE-ECc
Q psy5367 142 RSFIDTRRAGPGE-LSAHCVGPNKVAYCELYDHSDGTFTLNVKPQ---ESGRHVLTVK-YGD 198 (201)
Q Consensus 142 ~f~Vdt~~aG~g~-l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~---~~G~y~i~V~-~~g 198 (201)
.|.....+++.+. +.+.+ .|.. ..+.-..+|.|.+++.|. ..|.|.|.+. .-+
T Consensus 64 t~s~tvs~~~~g~~v~v~~---~g~~-~t~~~~~~G~ws~t~~~~~~l~~g~~ti~v~~~tD 121 (317)
T PF13753_consen 64 TFSGTVSGAEPGSTVTVTI---NGTT-GTLTADADGNWSVTVTPSDDLPDGDYTITVTTVTD 121 (317)
T ss_pred EEEEEecCCCCCCEEEEEE---CCEE-EEEEEecCCcEEEeeccccccccCcceeEEEEEEc
Confidence 5555544455555 55555 3321 233345788999999885 7899999988 543
No 113
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=37.22 E-value=2.1e+02 Score=22.56 Aligned_cols=71 Identities=21% Similarity=0.281 Sum_probs=40.2
Q ss_pred HHHHHhHHHhccHH--HHHHHHHHHHhc---CCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhccchHHHHHHHH
Q psy5367 11 VQRAKLAEQAERYD--DMAAAMKAVTET---GVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMARE 85 (201)
Q Consensus 11 ~~~aklae~~ery~--dm~~~mk~~~~~---~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~~~~~~~~~i~~ 85 (201)
-+..++|++.++.+ ...+..++.++. +..|+.||+.+|.-.-++.=.+ +.+.+.+.++-
T Consensus 68 ~~f~~~a~~L~~~~~~~~~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~----------------D~~~Q~k~i~l 131 (170)
T PF09548_consen 68 EFFERVAERLEKNEGESFAEAWEEAVEKLLKESALKKEDKEILLELGKSLGYS----------------DREMQEKHIEL 131 (170)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccC----------------CHHHHHHHHHH
Confidence 35556666655444 455555555543 4578888888776655443221 12334455666
Q ss_pred HHHHHHHHHHHh
Q psy5367 86 YREKVEKELRDI 97 (201)
Q Consensus 86 yr~kIe~EL~~i 97 (201)
|.+.++.++...
T Consensus 132 ~~~~L~~~~~~a 143 (170)
T PF09548_consen 132 YLEQLEQQLEEA 143 (170)
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 114
>COG2373 Large extracellular alpha-helical protein [General function prediction only]
Probab=37.19 E-value=1.8e+02 Score=31.49 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=46.6
Q ss_pred eCCceeEEeeccCC------CCCeeeEEEeCCCCc--ceeEEEECCCCEEEEEEeeCCC---eeEEEEEEECc
Q psy5367 137 LGQDIRSFIDTRRA------GPGELSAHCVGPNKV--AYCELYDHSDGTFTLNVKPQES---GRHVLTVKYGD 198 (201)
Q Consensus 137 vg~~~~f~Vdt~~a------G~g~l~v~I~gp~g~--~~~~v~d~~dgty~v~y~P~~~---G~y~i~V~~~g 198 (201)
-|+..++.+-+|+. .+..+++.+..|+|. -...+...++|.+.++|.-.+. |.|++.+.+.|
T Consensus 407 pGE~v~~~~~~R~~~~~~a~~~~p~~l~v~~PdG~~~~~~~~~~~~~G~~~~~~~l~~na~tG~w~l~~~~~~ 479 (1621)
T COG2373 407 PGETVHVNALLRDFDGKTALDNQPLKLRVLDPDGSVLRTLTITLDEEGLYELSFPLPENALTGGYTLELYTGG 479 (1621)
T ss_pred CCceeeeeeeehhhcccccccCCCeEEEEECCCCcEEEEEEEeccccCceEEeeeCCCCCCcceEEEEEEeCC
Confidence 56666777666652 345789999999995 3345556788999999976544 99999999987
No 115
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=36.81 E-value=1.5e+02 Score=20.78 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=27.2
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhc
Q psy5367 21 ERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVV 56 (201)
Q Consensus 21 ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i 56 (201)
++|+..+++++.+ ...|+.|++-.|---||.+.
T Consensus 3 ~~F~~A~~~v~~~---~~~~~~~~~L~lYalyKQAt 35 (85)
T cd00435 3 EEFEAAAEKVKKL---KTKPSNEEKLQLYSLYKQAT 35 (85)
T ss_pred HHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHHhc
Confidence 5688888888664 57899999999999999886
No 116
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=36.77 E-value=68 Score=17.84 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=21.4
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhc
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTET 36 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~ 36 (201)
+-.+|.+....++|+++..+..++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 446788888889999999999988764
No 117
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.11 E-value=39 Score=22.18 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.7
Q ss_pred HHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 12 QRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 12 ~~aklae~~ery~dm~~~mk~~~~ 35 (201)
....-.=|.++||+..+|++.+++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334444578999999999999885
No 118
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=34.86 E-value=1.4e+02 Score=27.07 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=20.1
Q ss_pred EEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 170 LYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 170 v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
+..+.+|.| +.. ..||.|+|.|...|.
T Consensus 344 ~~T~~~G~y-~r~--l~pG~Y~l~vs~~Gy 370 (392)
T cd03864 344 VTSGTLGDY-FRL--LLPGTYTVTASAPGY 370 (392)
T ss_pred eEECCCCcE-Eec--CCCeeEEEEEEEcCc
Confidence 345677888 444 558999999998874
No 119
>PF14203 DUF4319: Domain of unknown function (DUF4319); PDB: 2L7K_A.
Probab=34.24 E-value=25 Score=23.70 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=11.4
Q ss_pred CCHHhHhHHHHHhhhhcccch
Q psy5367 40 LSNEERNLLSVAYKNVVGARR 60 (201)
Q Consensus 40 L~~eERnLlsvayKn~i~~~R 60 (201)
+|.||.||+++--+ |+|+
T Consensus 2 FtvEE~nL~~iy~~---g~R~ 19 (64)
T PF14203_consen 2 FTVEEENLMCIYHT---GSRE 19 (64)
T ss_dssp --HHHHHHHHHH-----SHHH
T ss_pred CCHHHHHHHHHHcC---CCHH
Confidence 78999999998433 5555
No 120
>cd02114 bact_SorA_Moco sulfite:cytochrome c oxidoreductase subunit A (SorA), molybdopterin binding domain. SorA is involved in oxidation of sulfur compounds during chemolithothrophic growth. Together with SorB, a small c-type heme containing subunit, it forms a hetrodimer. It is a member of the sulfite oxidase (SO) family of molybdopterin binding domains. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.
Probab=34.17 E-value=3.4e+02 Score=24.39 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=29.8
Q ss_pred CeeeEEEeCCCCc--ceeEEEECC-CC---EEEEEEeeCCCeeEEEEEEEC
Q psy5367 153 GELSAHCVGPNKV--AYCELYDHS-DG---TFTLNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 153 g~l~v~I~gp~g~--~~~~v~d~~-dg---ty~v~y~P~~~G~y~i~V~~~ 197 (201)
+--+|.|.-..|. ..+++.+.. .. .|.++|.|..+|.|+|.++--
T Consensus 289 ~I~rVEVS~DgG~tW~~A~l~~~~~~~aW~~W~~~~~~~~~G~~~l~~RA~ 339 (367)
T cd02114 289 GIRRVDVSADGGDSWTQATLGPDLGRFSFRGWKLTLDGVKKGPLTLMVRAT 339 (367)
T ss_pred CEEEEEEEeCCCCcceEeEeCCCCCCcEEEEEEEEEECCCCCcEEEEEEEE
Confidence 3467778777774 455664322 22 356667788899999998743
No 121
>COG3141 DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS , pqiA [General function prediction only]
Probab=34.13 E-value=62 Score=23.26 Aligned_cols=41 Identities=32% Similarity=0.443 Sum_probs=25.8
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhc--C--CCCCHHhHhHHHH
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTET--G--VELSNEERNLLSV 50 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~--~--~~L~~eERnLlsv 50 (201)
++..|+-|- .|.+||.|++.-..+.+. + +.|..|+|.-||.
T Consensus 15 ekm~FtsK~--EADayDKMLd~Ad~L~e~L~ks~~~leeeq~E~Ls~ 59 (97)
T COG3141 15 EKMSFTSKK--EADAYDKMLDTADLLDEWLTKSPVSLEEEQREALSL 59 (97)
T ss_pred hhhccccHH--HHhHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHH
Confidence 344555542 489999999877666543 2 3455666666665
No 122
>PF09394 Inhibitor_I42: Chagasin family peptidase inhibitor I42; InterPro: IPR018990 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Chagasin reversible inhibitor of papain-like cysteine proteases []. Chagasin has a beta-barrel structure, which is a unique variant of the immunoglobulin fold with homology to human CD8alpha [, ].; PDB: 2NQD_A 2NNR_A 2H7W_B 3E1Z_A 3CBK_B 3CBJ_B 2OUL_B 2FO8_A 2WGN_B 2C34_A ....
Probab=33.59 E-value=84 Score=21.60 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=19.7
Q ss_pred CCCEEEEEEeeCCCeeEEEEEEEC
Q psy5367 174 SDGTFTLNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 174 ~dgty~v~y~P~~~G~y~i~V~~~ 197 (201)
..|+..++|.+..+|..+|...+.
T Consensus 51 ~~g~~~f~f~a~~~G~~~i~~~y~ 74 (92)
T PF09394_consen 51 APGTRTFTFKALKPGTTTIKFEYR 74 (92)
T ss_dssp SSEEEEEEEEESSSEEEEEEEEEE
T ss_pred CCcEEEEEEEEecCeeEEEEEEEE
Confidence 347889999999999999887763
No 123
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=33.39 E-value=1.1e+02 Score=32.17 Aligned_cols=63 Identities=22% Similarity=0.280 Sum_probs=34.5
Q ss_pred ceeCCceeEEeeccCCCCCeeeEE-----E-eCCCCc----c-eeEE-EECCCCEEEEEEeeCCCeeEEEEEEECc
Q psy5367 135 GTLGQDIRSFIDTRRAGPGELSAH-----C-VGPNKV----A-YCEL-YDHSDGTFTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 135 ~~vg~~~~f~Vdt~~aG~g~l~v~-----I-~gp~g~----~-~~~v-~d~~dgty~v~y~P~~~G~y~i~V~~~g 198 (201)
.++|++++++|..-+. ...+.+. | .+..|. + .+.+ .+..++-+.++|+|..+|.|.+.+..++
T Consensus 1035 ~~VGq~~~i~I~~~~~-~~s~~~~~~gV~v~~~~~~~~~s~~~~v~~q~~~~~~~~~l~~tp~~aGi~~vv~~~~~ 1109 (1289)
T PF06016_consen 1035 LVVGQQCSITIPGPNP-QASVSVTHDGVEVFTGTAGNLVSMVGPVALQYDPANNEWTLTWTPSTAGILDVVVDDGP 1109 (1289)
T ss_dssp SCTTT-EEEEEESS-T-TEEEEEECTTCEEEECCCTTTCESSSEEEEEEETTTTEEEEEEE-SS-CEEEEEECTTT
T ss_pred ccccceEEEEEccCCC-CceEEEEECCEEEEEecCCcccccccceeEEEeccCceEEEEEccCCCceEEEEeccCC
Confidence 3678888888776541 1111111 1 112221 1 1222 4778889999999999999998655443
No 124
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein. The characteristics of the protein distribution suggest prophage matches.
Probab=33.25 E-value=85 Score=24.26 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=20.2
Q ss_pred EEEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 169 ELYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 169 ~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.+....+|.|.+. .+||.|.|.++..|.
T Consensus 40 s~~t~~~G~Ys~~---~epG~Y~V~l~~~g~ 67 (134)
T PF08400_consen 40 SVVTGEAGEYSFD---VEPGVYRVTLKVEGR 67 (134)
T ss_pred EEEcCCCceEEEE---ecCCeEEEEEEECCC
Confidence 3344567888865 467999999988775
No 125
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=33.13 E-value=2.4e+02 Score=22.19 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCccceeeCCCCCcceeCCceeEEeeccCCC-------CCeeeEEEeCCCC-cceeEEEECCCCEE-----------EE
Q psy5367 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAG-------PGELSAHCVGPNK-VAYCELYDHSDGTF-----------TL 180 (201)
Q Consensus 120 ~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG-------~g~l~v~I~gp~g-~~~~~v~d~~dgty-----------~v 180 (201)
.||.+.-+.| -++++.+++--++.| +..+.|-|.|.-- ..++.+.+-...++ +|
T Consensus 56 ndPg~i~~~~-------~~g~~t~t~yiKNtG~~~~~fd~~sitVliDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~v 128 (154)
T COG3354 56 NDPGQIPYVG-------TDGPYTYTFYIKNTGSDSIAFDNTSITVLIDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTV 128 (154)
T ss_pred cCCCCCcccc-------CCCceEEEEEEecCCCcccccCCCeEEEEEcCcEeccceEEEEecCCCeeEecCCceeeEEEe
Confidence 4777666655 334443333333333 3345555555322 13344444333333 34
Q ss_pred EEeeCCCeeEEEEEEEC-cc
Q psy5367 181 NVKPQESGRHVLTVKYG-DL 199 (201)
Q Consensus 181 ~y~P~~~G~y~i~V~~~-g~ 199 (201)
-+.|. |.|.|.|..+ |.
T Consensus 129 n~~lS--Gyhri~V~~~~G~ 146 (154)
T COG3354 129 NEALS--GYHRIVVSLNNGV 146 (154)
T ss_pred ccCCC--cceEEEEEcCCCc
Confidence 44444 8888888877 54
No 126
>KOG2376|consensus
Probab=33.03 E-value=79 Score=30.45 Aligned_cols=45 Identities=33% Similarity=0.463 Sum_probs=36.2
Q ss_pred HHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhH--hHHHHH
Q psy5367 7 KEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEER--NLLSVA 51 (201)
Q Consensus 7 r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eER--nLlsva 51 (201)
+--+...|+++-..||||+.++--..+++.+.+...|+| ||+.|+
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA 156 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 344678999999999999999999999988777777765 566655
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=32.88 E-value=70 Score=24.17 Aligned_cols=46 Identities=11% Similarity=-0.059 Sum_probs=28.2
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKN 54 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn 54 (201)
+-+..+|.+..+.++|++.+.+..++++++|. +.+=..-|.++|..
T Consensus 59 ~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 59 RAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 34556777777777777777777777766542 33344444555543
No 128
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=32.60 E-value=4.2e+02 Score=24.83 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=40.8
Q ss_pred CCCcc--eeCCce--eEEeeccCCCCCeeeEEEeCCCCc--ce--eEEEECCCCEEEEEEeeCCCeeEEEEEEEC
Q psy5367 131 GLSVG--TLGQDI--RSFIDTRRAGPGELSAHCVGPNKV--AY--CELYDHSDGTFTLNVKPQESGRHVLTVKYG 197 (201)
Q Consensus 131 GL~~~--~vg~~~--~f~Vdt~~aG~g~l~v~I~gp~g~--~~--~~v~d~~dgty~v~y~P~~~G~y~i~V~~~ 197 (201)
||++- +.++.+ .|+|.+ .|.-.+.+.|....|. .. ..+.+.. ..+++...-.++|.|.|.|+.-
T Consensus 317 GL~~eY~I~dG~~~i~ftv~a--~g~~~vta~V~d~~g~~~~~~~~~v~d~s-~~vtL~Ls~~~AG~y~Lvv~~t 388 (478)
T PRK13211 317 GLAKEYKIGDGAATLDFTVTA--TGDMNVEATVYNHDGEALGSKSQTVNDGS-QSVSLDLSKLKAGHHMLVVKAK 388 (478)
T ss_pred cCcceeEEcCCcEEEEEEEEe--ccceEEEEEEEcCCCCeeeeeeEEecCCc-eeEEEecccCCCceEEEEEEEE
Confidence 46654 334444 555555 4677788888888874 22 2222222 4677777788999999998864
No 129
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=32.32 E-value=2.6e+02 Score=24.53 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=29.7
Q ss_pred CCCCeeeEEEeCCCCcc-e-eEEEEC--CCCEEEEEEee-------CCCeeEEEEEEE
Q psy5367 150 AGPGELSAHCVGPNKVA-Y-CELYDH--SDGTFTLNVKP-------QESGRHVLTVKY 196 (201)
Q Consensus 150 aG~g~l~v~I~gp~g~~-~-~~v~d~--~dgty~v~y~P-------~~~G~y~i~V~~ 196 (201)
++...+++.|.+.+|.+ + ..+-.. ..|.+.++|-. ..+|.|++.|..
T Consensus 163 ~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a 220 (295)
T PRK05842 163 ASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEY 220 (295)
T ss_pred ccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEE
Confidence 35567888888888863 2 222122 24777777743 456888888864
No 130
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=32.15 E-value=1.6e+02 Score=19.70 Aligned_cols=59 Identities=19% Similarity=0.252 Sum_probs=25.8
Q ss_pred CCceeEEeeccCCCCC---eeeEEEeCCCC-c---ceeEEEECCCC---EEEEEEeeC---CCeeEEEEEEE
Q psy5367 138 GQDIRSFIDTRRAGPG---ELSAHCVGPNK-V---AYCELYDHSDG---TFTLNVKPQ---ESGRHVLTVKY 196 (201)
Q Consensus 138 g~~~~f~Vdt~~aG~g---~l~v~I~gp~g-~---~~~~v~d~~dg---ty~v~y~P~---~~G~y~i~V~~ 196 (201)
|+...|.+.-++.|.. .+++.+..|.| . -+..+....-| +..++.+|. .+|.|.|.+..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a 75 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADAAPGTYTVTVTA 75 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence 4445555555554432 35566666766 1 22333232222 455555553 36888888764
No 131
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.04 E-value=1.4e+02 Score=27.18 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=29.8
Q ss_pred cccccccceEEEecccCCCccceeeCC-CCC-cceeCCceeEEeeccCCCCCeeeEEE
Q psy5367 104 RSQVKGCPLKVLVSAVCDATQVLCSGS-GLS-VGTLGQDIRSFIDTRRAGPGELSAHC 159 (201)
Q Consensus 104 l~~i~gSPf~v~v~~~~Daskv~~~G~-GL~-~~~vg~~~~f~Vdt~~aG~g~l~v~I 159 (201)
..+|+|-||++.| .+.|| ++- .....++...+.|..+||.|...+.+
T Consensus 62 ~y~isg~~etV~V---------tl~G~ns~~~~~~~~~dFkV~ADLt~a~~Gt~evkl 110 (403)
T COG4856 62 KYFISGQPETVTV---------TLKGPNSIVLKSEKPEDFKVVADLTHAGVGTHEVKL 110 (403)
T ss_pred cccccCCceEEEE---------EEeCCcceeeeeecCcCeEEEEEhhhcCCCceEeee
Confidence 4478899999987 44453 222 22455666667788887777655543
No 132
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=31.54 E-value=70 Score=28.76 Aligned_cols=54 Identities=15% Similarity=0.144 Sum_probs=45.4
Q ss_pred HHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHH
Q psy5367 11 VQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVI 66 (201)
Q Consensus 11 ~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i 66 (201)
|.+.+|+-+-|.|+..|+....+.+.|++...|=-+.|.-||-.+=- =+.|+..
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~--~~~~~~f 271 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK--PAEGLNF 271 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC--HHHHHHH
Confidence 56788888999999999999999999999999999999999987643 3444443
No 133
>PF07965 Integrin_B_tail: Integrin beta tail domain; InterPro: IPR012896 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. This entry represents the tail domain of the integrin beta subunit. It forms a four-stranded beta-sheet that contains parallel and anttparallel strands and faces an alpha helix found at the N terminus of this domain []. Interactions between the alpha-helix and the beta-sheet are mostly hydrophobic and involve a disulphide bond. The rear of the beta sheet is covered with a long A-B loop.; GO: 0004872 receptor activity, 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion, 0007229 integrin-mediated signaling pathway, 0008305 integrin complex; PDB: 3K71_H 3K6S_H 3K72_D 3IJE_B 1M1X_B 1U8C_B 2RN0_A 3FCS_B 1JV2_B 1L5G_B ....
Probab=30.60 E-value=1.8e+02 Score=20.39 Aligned_cols=30 Identities=27% Similarity=0.449 Sum_probs=25.3
Q ss_pred ceeEEEECCCCEEEEEEe-eCCCeeEEEEEE
Q psy5367 166 AYCELYDHSDGTFTLNVK-PQESGRHVLTVK 195 (201)
Q Consensus 166 ~~~~v~d~~dgty~v~y~-P~~~G~y~i~V~ 195 (201)
+.+...|-.|-+|..+|. ....|.|.|.|.
T Consensus 47 ~~C~~~De~dC~~~F~y~~~~~~~~~~v~V~ 77 (87)
T PF07965_consen 47 VRCSFRDEDDCWFTFTYEQYDGNGKYVVYVQ 77 (87)
T ss_dssp EEEEEEETTSEEEEEEEE-ECTTTEEEEEEE
T ss_pred CccccCCCCCcEEEEEEEEeCCCCeEEEEEc
Confidence 368888988899999999 778899999885
No 134
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=30.52 E-value=1e+02 Score=18.90 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=35.7
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHh
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVIS 67 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~ 67 (201)
+..+|.+..+.++|++.++..+++++..+.-. .=...+..+|... +....+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~a~~~~~ 58 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA-DAYYNLAAAYYKL-GKYEEALEDYE 58 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-HHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 46688888889999999999999887655422 2233444444442 33444555444
No 135
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=30.40 E-value=2.3e+02 Score=21.02 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=30.0
Q ss_pred eeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEE
Q psy5367 136 TLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTV 194 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V 194 (201)
..|++..|.+...| .-..+.+ |+-. .++.-...-+-.++|+|..||.|.+..
T Consensus 51 p~g~~v~~~ltS~D-ViHsf~i----p~~~--~k~d~~PG~~~~~~~~~~~~G~y~~~C 102 (120)
T PF00116_consen 51 PAGQPVRFHLTSED-VIHSFWI----PELG--IKMDAIPGRTNSVTFTPDKPGTYYGQC 102 (120)
T ss_dssp ETTSEEEEEEEESS-S-EEEEE----TTCT--EEEEEBTTCEEEEEEEESSSEEEEEEE
T ss_pred cccceEeEEEEcCC-ccccccc----cccC--cccccccccceeeeeeeccCCcEEEcC
Confidence 34566666666644 1111211 3322 333334556788999999999998753
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.31 E-value=4.7e+02 Score=25.70 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=43.2
Q ss_pred cHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhh
Q psy5367 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQK 72 (201)
Q Consensus 6 ~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~ 72 (201)
+.+-+..+|.+..+.|+|++..++..+++..++ ..+.-++|.| +..-.+...|.-..++++-
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p---~~~~~~~~~a--~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHP---EFENGYVGWA--QSLTRRGALWRARDVLQAG 214 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CcHHHHHHHH--HHHHHcCCHHHHHHHHHHH
Confidence 456788999999999999999999999987433 4566677766 3333344455555555443
No 137
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.26 E-value=80 Score=19.40 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=29.0
Q ss_pred HHHHHhHHHhccHHHHHHHHHHHHhcC-CCCCHHhHhHHH
Q psy5367 11 VQRAKLAEQAERYDDMAAAMKAVTETG-VELSNEERNLLS 49 (201)
Q Consensus 11 ~~~aklae~~ery~dm~~~mk~~~~~~-~~L~~eERnLls 49 (201)
+.+|+..-+.|.++...+-+.++++.+ ++.-.|=|.||.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 468999999999999999999998643 344455555553
No 138
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=30.14 E-value=3.9e+02 Score=24.24 Aligned_cols=48 Identities=17% Similarity=-0.039 Sum_probs=29.0
Q ss_pred CCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEee--CCCeeEEEEEEECc
Q psy5367 150 AGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKP--QESGRHVLTVKYGD 198 (201)
Q Consensus 150 aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P--~~~G~y~i~V~~~g 198 (201)
.|.-.+.+.+.+|+|.......+...+ -.-...| .+.|.|.+..+..|
T Consensus 239 ~~s~~~~~~~~~P~g~~~~~~~~~~~~-~~~~~l~~~~~~G~Y~i~~~~~~ 288 (374)
T TIGR03503 239 PGSLVIHGELVFPNGQIQQFSIELEEP-ETRVDLPANYEFGKYRVKGTVFG 288 (374)
T ss_pred cccEEEEEEEECCCCceEEecccCccC-ceEEeccCcCCCeEEEEEEEEEE
Confidence 345556677889998643333332222 2223334 48999999988765
No 139
>PF10632 He_PIG_assoc: He_PIG associated, NEW1 domain of bacterial glycohydrolase; InterPro: IPR019599 This domain has been named NEW1 but its actual function is not known. It is found on proteins which are bacterial galactosidases []. The domain is associated with IPR008009 from INTERPRO, a putative Ig-containing domain.
Probab=30.09 E-value=41 Score=19.00 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=9.0
Q ss_pred ccccceEEEec
Q psy5367 107 VKGCPLKVLVS 117 (201)
Q Consensus 107 i~gSPf~v~v~ 117 (201)
-||+||-..|.
T Consensus 12 rPg~pfl~~Ip 22 (29)
T PF10632_consen 12 RPGSPFLFTIP 22 (29)
T ss_pred cCCCcEEEEee
Confidence 48999999874
No 140
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=29.92 E-value=43 Score=23.56 Aligned_cols=31 Identities=23% Similarity=0.113 Sum_probs=23.2
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCCCC
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGVEL 40 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~~L 40 (201)
|=++++.....|+|.||++|--.=+++..+|
T Consensus 46 lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3388999999999999999875545544443
No 141
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=29.73 E-value=62 Score=25.48 Aligned_cols=56 Identities=16% Similarity=0.274 Sum_probs=31.6
Q ss_pred eeCCceeEEeeccC-CCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEEEEEE
Q psy5367 136 TLGQDIRSFIDTRR-AGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKY 196 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~-aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i~V~~ 196 (201)
.-+-|..+...+++ .|--.|-++|.+-+.--. +.-.| |.....|..||.|++.|..
T Consensus 58 ~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr----~~~~G-YG~~~lP~~pG~h~~~v~~ 114 (168)
T PF07162_consen 58 VFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGR----DRVEG-YGFCHLPTQPGRHEVEVPT 114 (168)
T ss_pred EEeccEEEEEEeCCCCCCceEEEEEEEEcccCC----eEEeE-EeEEEeCCCCceEEEEEEE
Confidence 34455555555543 232345555544332100 01113 9999999999999999864
No 142
>PF06488 L_lac_phage_MSP: Lactococcus lactis bacteriophage major structural protein; InterPro: IPR010517 This family consists of several Lactococcus lactis bacteriophage F4-1 major structural proteins []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.57 E-value=1.6e+02 Score=24.70 Aligned_cols=88 Identities=18% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccceEEEecccCCCccceeeCCCCCcceeCCceeEEeec--cCCCCCeeeEE--
Q psy5367 83 AREYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDT--RRAGPGELSAH-- 158 (201)
Q Consensus 83 i~~yr~kIe~EL~~iC~eil~l~~i~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt--~~aG~g~l~v~-- 158 (201)
.++|-++.|.-|..+--+ ..++|-| ..|.+... .++-+..|-. +...++-+ +++-++++.|+
T Consensus 195 akdfa~kmesglfimq~d----t~LAG~v--TLVAPTgn--taTTst~Gaa------DaTAtLPtTLKdSkGaDVpVTsV 260 (301)
T PF06488_consen 195 AKDFAKKMESGLFIMQPD----TVLAGDV--TLVAPTGN--TATTSTKGAA------DATATLPTTLKDSKGADVPVTSV 260 (301)
T ss_pred HHHHHHHhhcceEEeccC----ceecCce--EEEeccCC--cceeeecccc------CceEEcccccccCCCCcceeEEE
Confidence 467777777766532111 1345555 34433332 2222222222 33444433 34444554444
Q ss_pred EeCCCCcceeEEEECCCCEEEEEEeeC
Q psy5367 159 CVGPNKVAYCELYDHSDGTFTLNVKPQ 185 (201)
Q Consensus 159 I~gp~g~~~~~v~d~~dgty~v~y~P~ 185 (201)
|...+|.+- .=-...-|+|.|+|...
T Consensus 261 ITnssG~~v-TNgqLsaGtYtVTySAs 286 (301)
T PF06488_consen 261 ITNSSGNVV-TNGQLSAGTYTVTYSAS 286 (301)
T ss_pred EEcCCCcEe-ecCcccCceEEEEEecc
Confidence 777777431 11345678999999764
No 143
>cd08546 cohesin_like Cohesin domain, interaction parter of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. Cohesin modules are phylogenetically distributed into three groups: type I cohesin-dockerin interactions mediate assembly of a range of dockerin-borne enzymes to the complex, while type-II interactions mediate attachment of the cellulosome complex to the bacterial cell wall. Recently discovered type-III cohesins, such as found in the anchoring scaffoldin ScaE, appears to contribute to increased stability of the elaborate cellulosome complex. While the p
Probab=29.43 E-value=2.2e+02 Score=20.58 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=26.3
Q ss_pred CCeeeEEEeCCCCcceeEEEECCCCE-EEEEEeeCCCeeEEEEEE
Q psy5367 152 PGELSAHCVGPNKVAYCELYDHSDGT-FTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 152 ~g~l~v~I~gp~g~~~~~v~d~~dgt-y~v~y~P~~~G~y~i~V~ 195 (201)
.|.+++...++...-. -.++|+ .+++|.+..+|...|.+.
T Consensus 69 ~g~i~v~~~~~~~~~~----~~g~g~l~~l~fka~~~g~~~i~l~ 109 (135)
T cd08546 69 PGTIRVLFSDSGLGGG----ISGDGVLATITFKVKAGGTSAISLT 109 (135)
T ss_pred CCEEEEEEeccCCCCc----CcCCcEEEEEEEEEcCCCceEEEEE
Confidence 5777777666654210 134443 788888888888888876
No 144
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain I. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally active at p
Probab=29.25 E-value=2.1e+02 Score=25.58 Aligned_cols=45 Identities=9% Similarity=-0.068 Sum_probs=29.5
Q ss_pred CCeeeEEEeCCCCc----ceeE-------EEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 152 PGELSAHCVGPNKV----AYCE-------LYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 152 ~g~l~v~I~gp~g~----~~~~-------v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.+.++-.|.+++|. +.+. +..+.+|.|. . ...||.|+|.|+..|.
T Consensus 295 ~~~i~G~V~d~~g~pv~~A~V~v~~~~~~~~td~~G~y~-~--~l~~G~Y~l~vs~~Gf 350 (372)
T cd03868 295 HIGVKGFVRDASGNPIEDATIMVAGIDHNVTTAKFGDYW-R--LLLPGTYTITAVAPGY 350 (372)
T ss_pred CCceEEEEEcCCCCcCCCcEEEEEecccceEeCCCceEE-e--cCCCEEEEEEEEecCC
Confidence 34456667777652 2222 3456788886 2 3569999999998874
No 145
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3.4.17.10) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPE is an important enzyme responsible for the proteolytic processing of prohormone intermediates (such as pro-insulin, pro-opiomelanocortin, or pro-gonadotropin-releasing hormone) by specifically removing C-terminal basic residues. In addition, it has been proposed that the regulated secretory pathway (RSP) of the nervous and endocrine systems utilizes membrane-bound CPE as a sorting receptor. A naturally occurring point mutation in CPE reduces the stability of the enzyme and causes its degradation, leading to an accumulation of numerous neuroendocrine pe
Probab=29.02 E-value=2e+02 Score=26.28 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=20.3
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
..+.+|.|.. ...||.|+|.|...|.
T Consensus 355 ~T~~~G~Y~~---~L~pG~Ytv~vsa~Gy 380 (402)
T cd03865 355 TSAKDGDYWR---LLAPGNYKLTASAPGY 380 (402)
T ss_pred EECCCeeEEE---CCCCEEEEEEEEecCc
Confidence 3557888885 4568999999998875
No 146
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=28.90 E-value=28 Score=22.44 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=6.5
Q ss_pred HHHHhcCCCCCHHhHhHHH
Q psy5367 31 KAVTETGVELSNEERNLLS 49 (201)
Q Consensus 31 k~~~~~~~~L~~eERnLls 49 (201)
..++|.++.||.|||.|-.
T Consensus 19 ~g~veVD~~~tpEe~h~~~ 37 (52)
T PF10515_consen 19 HGFVEVDPCLTPEERHLSN 37 (52)
T ss_dssp -----------HHHHHHHH
T ss_pred cceEEecCCCChHHHHHHH
Confidence 3467888999999998754
No 147
>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase. tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.
Probab=28.84 E-value=3.3e+02 Score=24.22 Aligned_cols=40 Identities=13% Similarity=0.126 Sum_probs=30.3
Q ss_pred CeeeEEEeCCCCcceeEEEECCCCEEEEEEe-e---CCCeeEEE
Q psy5367 153 GELSAHCVGPNKVAYCELYDHSDGTFTLNVK-P---QESGRHVL 192 (201)
Q Consensus 153 g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~-P---~~~G~y~i 192 (201)
.++.+.|+....++++.+....++...|.|. | ..||.+-+
T Consensus 296 ~~~~~k~R~~~~~~~~~~~~~~~~~~~v~f~~p~~~v~pGQ~~v 339 (352)
T TIGR00420 296 MRCTVKIRYRQVPVQCKLKLLDDNLIEVIFDEPQAGVTPGQSAV 339 (352)
T ss_pred eEEEEEEccCCCCcCEEEEEecCCEEEEEeCCCCcccCCCcEEE
Confidence 4677888877778889998777888999994 3 47787543
No 148
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=28.59 E-value=68 Score=22.48 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCCCCHHhHhHHHH
Q psy5367 28 AAMKAVTETGVELSNEERNLLSV 50 (201)
Q Consensus 28 ~~mk~~~~~~~~L~~eERnLlsv 50 (201)
+.+-.+-.++..||+||..+|+.
T Consensus 21 EIL~ALrkLge~Ls~eE~~FL~~ 43 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEAFLEA 43 (78)
T ss_dssp HHHHHHHHTT----HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHH
Confidence 33334445689999999999986
No 149
>PRK13736 conjugal transfer protein TraK; Provisional
Probab=28.54 E-value=3.6e+02 Score=22.79 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=47.1
Q ss_pred cccceEEEecccCCCccceeeCCCCCcceeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEeeC-C
Q psy5367 108 KGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQ-E 186 (201)
Q Consensus 108 ~gSPf~v~v~~~~Daskv~~~G~GL~~~~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~-~ 186 (201)
.|..+.+.++ ..||++..+-|..+... ..+..+.....+...|.+-+.+. ++.+.-.-++..+.-.|.+.-+|. -
T Consensus 35 ~~~~v~i~lS-~~~pNri~V~gDkI~~v--s~p~g~~~~~~~~~~G~i~vs~~-~~~pfTlfvtTekG~~~sl~~~P~~~ 110 (245)
T PRK13736 35 NGGQASIALS-NTSPNLFTVPGDRITAV--SSLDGALTNNEQTASGGVVLATV-NKKPFTFILETERGLNLSIQAVPRAG 110 (245)
T ss_pred CCCcEEEEEe-CCCCcEEEecCCcEEEe--eCCCccccccCCCCCceEEEEec-CCCCEEEEEECCCCCEEEEEEEeccC
Confidence 5666677765 47889888888766652 33433333333445566666553 333444445555556788888887 5
Q ss_pred Cee
Q psy5367 187 SGR 189 (201)
Q Consensus 187 ~G~ 189 (201)
||.
T Consensus 111 ~g~ 113 (245)
T PRK13736 111 AGR 113 (245)
T ss_pred CCc
Confidence 555
No 150
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=28.33 E-value=1.1e+02 Score=23.45 Aligned_cols=69 Identities=17% Similarity=0.199 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhccc-chhhHHHHhhHhhhhccchHHHHHHHHHHHHHHHHHHHhhh
Q psy5367 21 ERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGA-RRSSWRVISSIEQKTEGSERKQQMAREYREKVEKELRDICY 99 (201)
Q Consensus 21 ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~-~R~swR~i~~~e~~~~~~~~~~~~i~~yr~kIe~EL~~iC~ 99 (201)
.-|++|-+.+...+|. |=-.-|. ++.++++.+.+ .+..--..-++...+|-.++..+|+++-+
T Consensus 47 ~~y~~~~dLiD~F~E~---------------yiG~~Gr~Y~P~l~~~s~~-d~~~~l~~~l~~a~~i~~~l~s~L~N~~D 110 (126)
T PHA02604 47 FFYEEMPDLIDKFAEQ---------------YIGISGRKYKPSLPSASEL-DTIAFLDELLQEAEEIYKELPSALQSTLD 110 (126)
T ss_pred HHHHHhhHHHHHHHHH---------------HHhhcccCcCccccccccc-CHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3466777666666663 1111112 33666666555 11111112245667777788888888888
Q ss_pred hhhhcc
Q psy5367 100 DVLKRS 105 (201)
Q Consensus 100 eil~l~ 105 (201)
||..+.
T Consensus 111 dI~~~~ 116 (126)
T PHA02604 111 DITGLC 116 (126)
T ss_pred HHHHHH
Confidence 887654
No 151
>KOG1834|consensus
Probab=28.31 E-value=45 Score=32.57 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=27.5
Q ss_pred cccceEEEecccCCCccceeeCCCCCcc------eeCCceeEEeeccCCCCCee
Q psy5367 108 KGCPLKVLVSAVCDATQVLCSGSGLSVG------TLGQDIRSFIDTRRAGPGEL 155 (201)
Q Consensus 108 ~gSPf~v~v~~~~Daskv~~~G~GL~~~------~vg~~~~f~Vdt~~aG~g~l 155 (201)
.+-||.+.| .| ...|.|+-.+ ...+.++|+|.+-+.|.|.-
T Consensus 77 q~vPFdavV---vd----K~TGegvlRaK~~lDCelqkeytf~iQAydCg~gpd 123 (952)
T KOG1834|consen 77 QPVPFDAVV---VD----KYTGEGVLRAKEPLDCELQKEYTFTIQAYDCGNGPD 123 (952)
T ss_pred CCCCceEEE---Ee----ccCCceEEeecCcccccccccceEEEEEEecCCCCC
Confidence 556888887 33 3457666543 34567899999888776653
No 152
>PRK15443 pduE propanediol dehydratase small subunit; Provisional
Probab=28.05 E-value=1.1e+02 Score=23.75 Aligned_cols=60 Identities=25% Similarity=0.238 Sum_probs=41.7
Q ss_pred ccHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHh
Q psy5367 5 GEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIE 70 (201)
Q Consensus 5 ~~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e 70 (201)
++.+-|.+.|.+|+.+||- -++..+.+..|+-.- +++|-|=- =|.+-++|++---|..+-
T Consensus 46 ItpetL~~QaqiAe~~Gr~-~la~NfrRAAELt~v--pD~rvLei---YnaLRP~RStk~ELl~iA 105 (138)
T PRK15443 46 ITPETLRMQAQIAEDAGRP-QLAMNFRRAAELTAV--PDDRILEI---YNALRPYRSTKEELLAIA 105 (138)
T ss_pred cCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhccCC--CHHHHHHH---HHhhCCCcccHHHHHHHH
Confidence 4688999999999999997 677777787764211 34554322 278888888766665443
No 153
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=27.43 E-value=1.4e+02 Score=21.07 Aligned_cols=55 Identities=15% Similarity=0.103 Sum_probs=30.1
Q ss_pred CCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEEe--eCCCeeEEEEEEEC
Q psy5367 138 GQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNVK--PQESGRHVLTVKYG 197 (201)
Q Consensus 138 g~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y~--P~~~G~y~i~V~~~ 197 (201)
....+|.|.|.-.|+ .|.+. .+|..+....-+ +|+..+.+. ++.+|.|+|.|.=.
T Consensus 14 ~~~tS~~Vs~~~~gs---~ValS-~dg~l~G~ai~~-sG~ati~l~~~it~~~~~tlTit~~ 70 (81)
T PF03785_consen 14 LGQTSISVSCDVPGS---YVALS-QDGDLYGKAIVN-SGNATINLTNPITDEGTLTLTITAF 70 (81)
T ss_dssp TT-SEEEEEESSTT----EEEEE-ETTEEEEEEE-B-TTEEEEE-SS--TT-SEEEEEEE-T
T ss_pred ccccEEEEEecCCCc---EEEEe-cCCEEEEEEEec-CceEEEECCcccCCCceEEEEEEEE
Confidence 346688888852232 23332 334444444444 788888887 47889999988643
No 154
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=27.41 E-value=84 Score=20.55 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=4.0
Q ss_pred eEEeeccCCC
Q psy5367 142 RSFIDTRRAG 151 (201)
Q Consensus 142 ~f~Vdt~~aG 151 (201)
..+||....|
T Consensus 14 ~V~vdg~~~G 23 (71)
T PF08308_consen 14 EVYVDGKYIG 23 (71)
T ss_pred EEEECCEEec
Confidence 4444443333
No 155
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=27.08 E-value=1.2e+02 Score=22.19 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=15.9
Q ss_pred EEEEEeeCCCeeEEEEEEECcc
Q psy5367 178 FTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 178 y~v~y~P~~~G~y~i~V~~~g~ 199 (201)
|+-.++|.+.|.|++.+.-+|.
T Consensus 50 ~~G~~~~~~~G~y~f~~~~~d~ 71 (145)
T PF07691_consen 50 WTGYFKPPETGTYTFSLTSDDG 71 (145)
T ss_dssp EEEEEEESSSEEEEEEEEESSE
T ss_pred EEEEEecccCceEEEEEEeccc
Confidence 5667778888888887775553
No 156
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=27.04 E-value=76 Score=26.40 Aligned_cols=30 Identities=17% Similarity=0.118 Sum_probs=26.4
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
++.+|.+..+.|++++.+++++++++.+|.
T Consensus 149 ~~~~a~~~~~~G~~~~A~~~~~~al~~~P~ 178 (280)
T PF13429_consen 149 WLALAEIYEQLGDPDKALRDYRKALELDPD 178 (280)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999998776
No 157
>KOG0277|consensus
Probab=27.03 E-value=1.1e+02 Score=26.63 Aligned_cols=38 Identities=29% Similarity=0.540 Sum_probs=27.7
Q ss_pred CCCCeeeEE-EeCCCCcceeEEEECCCCEEEEEEeeCCC
Q psy5367 150 AGPGELSAH-CVGPNKVAYCELYDHSDGTFTLNVKPQES 187 (201)
Q Consensus 150 aG~g~l~v~-I~gp~g~~~~~v~d~~dgty~v~y~P~~~ 187 (201)
+|+|.|.+- +.+|.|...+.-.|..||-|.|.|.|...
T Consensus 35 ~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e 73 (311)
T KOG0277|consen 35 AGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHE 73 (311)
T ss_pred ccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCc
Confidence 577776544 44677765677789999999999987643
No 158
>COG4387 Mu-like prophage protein gp36 [Function unknown]
Probab=26.42 E-value=61 Score=24.81 Aligned_cols=30 Identities=27% Similarity=0.496 Sum_probs=22.4
Q ss_pred HHHHHhHHHh-ccHHHHHHHHHHHHhcCCCC
Q psy5367 11 VQRAKLAEQA-ERYDDMAAAMKAVTETGVEL 40 (201)
Q Consensus 11 ~~~aklae~~-ery~dm~~~mk~~~~~~~~L 40 (201)
+..+|+.+|+ .||++.+.+++.+..-+..|
T Consensus 77 L~~~r~Tdq~r~rYe~av~~L~~va~G~V~l 107 (139)
T COG4387 77 LCKNRATDQARQRYEDAVRFLEKVASGAVSL 107 (139)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 3456778888 89999999999987543333
No 159
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=26.33 E-value=95 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.212 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCCCCHHhHhHHHHH
Q psy5367 28 AAMKAVTETGVELSNEERNLLSVA 51 (201)
Q Consensus 28 ~~mk~~~~~~~~L~~eERnLlsva 51 (201)
+.+-.+.+++|+|+.+.|+.+---
T Consensus 45 ~~im~vc~Qnp~L~~~~R~~iirE 68 (113)
T PF12290_consen 45 SQIMAVCEQNPELEFSQRFQIIRE 68 (113)
T ss_pred HHHHHHHccCCCCCHHHHHHHHHH
Confidence 445667788999999999987643
No 160
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=26.30 E-value=81 Score=19.91 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhc--CCCCCHHh
Q psy5367 23 YDDMAAAMKAVTET--GVELSNEE 44 (201)
Q Consensus 23 y~dm~~~mk~~~~~--~~~L~~eE 44 (201)
|+++++.+..++.. ++++|.||
T Consensus 1 fEe~~~~Le~Iv~~Le~~~~sLde 24 (53)
T PF02609_consen 1 FEEAMERLEEIVEKLESGELSLDE 24 (53)
T ss_dssp HHHHHHHHHHHHHHHHTT-S-HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHH
Confidence 67777888777753 66777665
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=25.89 E-value=1.9e+02 Score=22.03 Aligned_cols=28 Identities=7% Similarity=0.062 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhc
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTET 36 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~ 36 (201)
-+..++.++...++|+++..++++.+.+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3456666666667777777777666655
No 162
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=25.23 E-value=1.7e+02 Score=24.26 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=9.7
Q ss_pred CCCCEEEEEEeeC
Q psy5367 173 HSDGTFTLNVKPQ 185 (201)
Q Consensus 173 ~~dgty~v~y~P~ 185 (201)
..+|.|+++....
T Consensus 160 lp~G~Y~~~V~a~ 172 (218)
T PRK09619 160 LQPGQYQLSVVSG 172 (218)
T ss_pred CCCceeEEEEEEe
Confidence 4678898888754
No 163
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=25.16 E-value=82 Score=20.78 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=14.1
Q ss_pred EEEEeeCCCeeEEEEEEECc
Q psy5367 179 TLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 179 ~v~y~P~~~G~y~i~V~~~g 198 (201)
.++|+...+|.|.|.+...+
T Consensus 46 ~~~~~y~~~G~y~v~l~v~n 65 (79)
T smart00089 46 TVTHTYTKPGTYTVTLTVTN 65 (79)
T ss_pred CEEEEeCCCcEEEEEEEEEc
Confidence 44666678888888877654
No 164
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=25.01 E-value=82 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcC--CCCCHHhHhHHHHH
Q psy5367 25 DMAAAMKAVTETG--VELSNEERNLLSVA 51 (201)
Q Consensus 25 dm~~~mk~~~~~~--~~L~~eERnLlsva 51 (201)
|+.+.++.+++.. .+||.|||+||--.
T Consensus 2 ~~~~~L~~i~~~~p~~~l~~~ek~llW~~ 30 (169)
T cd00869 2 ETQEKLLDLIQKQSTYTLSTEDKDLLWEK 30 (169)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHH
Confidence 4567788888764 58999999988653
No 165
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=24.65 E-value=1e+02 Score=24.19 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=25.9
Q ss_pred CCCCHHhHhHHHHHhhhhcccchhhHHHHhhH
Q psy5367 38 VELSNEERNLLSVAYKNVVGARRSSWRVISSI 69 (201)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~swR~i~~~ 69 (201)
|.+|.|-|.-|.-.-|......|.+.|.+-.-
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~ 116 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRD 116 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999988888888888888888888653
No 166
>PF06742 DUF1214: Protein of unknown function (DUF1214); InterPro: IPR010621 This entry represents the C-terminal domain of several hypothetical proteins of unknown function. ; PDB: 3U07_A 3VB9_D 2P3Y_A.
Probab=24.63 E-value=69 Score=22.68 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=15.7
Q ss_pred EEEECCCCEEEEEEeeCCCee
Q psy5367 169 ELYDHSDGTFTLNVKPQESGR 189 (201)
Q Consensus 169 ~v~d~~dgty~v~y~P~~~G~ 189 (201)
.+..+.||+|+|.+-|..|+.
T Consensus 60 ~i~~~~DGsf~i~ls~~~p~~ 80 (103)
T PF06742_consen 60 SINSDADGSFTITLSPEPPGG 80 (103)
T ss_dssp EEETTTTSEEEEEEESS-TTT
T ss_pred ccccCCCccEEEEEeCCCCCC
Confidence 344599999999999977643
No 167
>PF02246 B1: Protein L b1 domain; InterPro: IPR003147 Protein L is a bacterial protein with immunoglobulin (Ig) light chain-binding properties. It contains a number of homologous b1 repeats towards the N terminus. These repeats have been found to be responsible for the interaction of protein L with Ig light chains [].; PDB: 1KH0_A 1K52_A 1JML_A 2PTL_A 1K50_B 1HZ6_C 1HZ5_B 1K53_B 2KAC_A 2JZP_A ....
Probab=24.55 E-value=46 Score=22.12 Aligned_cols=29 Identities=21% Similarity=0.493 Sum_probs=19.9
Q ss_pred eEEEECCCCEEEEEEeeCCCeeEEEEEEECcc
Q psy5367 168 CELYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 168 ~~v~d~~dgty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
++.....+|.|++-. +.|-|+|+|+|.|.
T Consensus 41 ad~l~k~ng~yt~d~---~d~gytlnikfagk 69 (69)
T PF02246_consen 41 ADLLKKENGEYTVDV---ADKGYTLNIKFAGK 69 (69)
T ss_dssp HHHHHHHHBEEEEEE---ECCCTEEEEEEEE-
T ss_pred HHHHHhhCCceEEEe---ccCceEEEEEecCC
Confidence 344445668787654 46789999999873
No 168
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=24.49 E-value=2.6e+02 Score=19.69 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=16.7
Q ss_pred EEEEEeeCCCeeEEEEEEECc
Q psy5367 178 FTLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 178 y~v~y~P~~~G~y~i~V~~~g 198 (201)
-+|.|.|..||.++|.|....
T Consensus 62 ~tv~~~~~~~~~g~l~v~~~s 82 (88)
T PF10648_consen 62 GTVSFPPPPPGKGTLEVFEDS 82 (88)
T ss_pred EEEEeCCCCCCceEEEEEEeC
Confidence 567888888999999887654
No 169
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=24.48 E-value=1.1e+02 Score=19.04 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=16.9
Q ss_pred ECCCCEEEEEEeeCCC---eeEEEEEEECc
Q psy5367 172 DHSDGTFTLNVKPQES---GRHVLTVKYGD 198 (201)
Q Consensus 172 d~~dgty~v~y~P~~~---G~y~i~V~~~g 198 (201)
|...|+ ++.+|... |.|.+.|...+
T Consensus 19 d~~tG~--isGtp~~~~~~G~y~~~vtatd 46 (49)
T PF05345_consen 19 DPSTGT--ISGTPTSSVQPGTYTFTVTATD 46 (49)
T ss_pred eCCCCE--EEeecCCCccccEEEEEEEEEc
Confidence 555564 45556655 99999988754
No 170
>KOG0550|consensus
Probab=24.23 E-value=2.7e+02 Score=25.96 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=53.7
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhh
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT 73 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~ 73 (201)
.-++.+|+--.-.|.|++.|+..++..+. +.|.|-|..|--|-+-+--++|..|=.|..+-+.+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~--~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~a 385 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL--EKDCEIRRTLREAQLALKKSKRKDWYKILGISRNA 385 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhc
Confidence 34677888888889999999999998875 45588899999888888889999999998776654
No 171
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=23.71 E-value=2.1e+02 Score=23.95 Aligned_cols=17 Identities=18% Similarity=0.606 Sum_probs=11.8
Q ss_pred CCCCEEEEEEeeCC-Cee
Q psy5367 173 HSDGTFTLNVKPQE-SGR 189 (201)
Q Consensus 173 ~~dgty~v~y~P~~-~G~ 189 (201)
..+|.|+++..... .|.
T Consensus 170 ~~~G~Y~~~V~a~~~~G~ 187 (230)
T PRK12633 170 LADGKYSITVSASDADAK 187 (230)
T ss_pred CCCcceEEEEEEEeCCCc
Confidence 35788988887743 454
No 172
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=23.58 E-value=65 Score=20.71 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=20.4
Q ss_pred CCHHhHhHHHHHhhhh--cccchhhHHHHh
Q psy5367 40 LSNEERNLLSVAYKNV--VGARRSSWRVIS 67 (201)
Q Consensus 40 L~~eERnLlsvayKn~--i~~~R~swR~i~ 67 (201)
||..||..|..||+.= =.+|+.+..-|.
T Consensus 1 LT~~Q~e~L~~A~~~GYfd~PR~~tl~elA 30 (53)
T PF04967_consen 1 LTDRQREILKAAYELGYFDVPRRITLEELA 30 (53)
T ss_pred CCHHHHHHHHHHHHcCCCCCCCcCCHHHHH
Confidence 7889999999999862 235666666654
No 173
>COG5489 Uncharacterized conserved protein [Function unknown]
Probab=23.40 E-value=2e+02 Score=21.26 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=30.3
Q ss_pred cCCCCCeeeEEEeCCCC--cceeEEEE-CCCCEEEEEEeeCCC
Q psy5367 148 RRAGPGELSAHCVGPNK--VAYCELYD-HSDGTFTLNVKPQES 187 (201)
Q Consensus 148 ~~aG~g~l~v~I~gp~g--~~~~~v~d-~~dgty~v~y~P~~~ 187 (201)
++.|..=|+|.+..|+= ++++.+.. .++|+|.+-|.+..+
T Consensus 63 s~~G~dYlsvkLddP~f~~~i~A~L~~~e~~~~~~liW~rp~~ 105 (107)
T COG5489 63 SNSGRDYLSVKLDDPSFGAPIYANLFPAEGEGTYALIWNRPKR 105 (107)
T ss_pred cccCcceEEEEecCCcCCCeeEeeeeecCCCCcEEEEecCCCC
Confidence 55677789999999995 36666654 448999999988654
No 174
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=23.39 E-value=2.4e+02 Score=18.99 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=10.0
Q ss_pred CCCCEEEEEEeeCCCeeEEEEE
Q psy5367 173 HSDGTFTLNVKPQESGRHVLTV 194 (201)
Q Consensus 173 ~~dgty~v~y~P~~~G~y~i~V 194 (201)
.++|.|.++- |..+|.|.-..
T Consensus 33 ~~~G~w~~~~-~l~~G~y~Ykf 53 (82)
T cd02861 33 EGDGLWVVTV-ELRPGRYEYKF 53 (82)
T ss_pred CCCCcEEEEE-eCCCCcEEEEE
Confidence 3445555554 44455544333
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=23.29 E-value=5.2e+02 Score=22.75 Aligned_cols=58 Identities=10% Similarity=0.069 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhh
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISS 68 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~ 68 (201)
-+..+|.+..+.++|++.+.+..+++++++.. .+=...|..+|-. .|....|.+.+..
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45677777778888888888888888776643 3334455555543 3666666666643
No 176
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=23.15 E-value=5e+02 Score=23.53 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.7
Q ss_pred ECCCCEEEEEEeeCCCeeEEEEEEECccc
Q psy5367 172 DHSDGTFTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 172 d~~dgty~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
=..||| .+.-.||+-+|.+++-|.|
T Consensus 218 ~~~~g~----~~al~pgd~ti~~~ipg~a 242 (375)
T PRK02654 218 VSEDGT----IEALAPGDATIQGTIPGLA 242 (375)
T ss_pred ECCCCc----EEEecCCceEEEEeeccee
Confidence 355674 4477899999999987764
No 177
>cd00146 PKD polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.
Probab=23.01 E-value=98 Score=20.49 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=14.3
Q ss_pred EEEEeeCCCeeEEEEEEECcc
Q psy5367 179 TLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 179 ~v~y~P~~~G~y~i~V~~~g~ 199 (201)
.++|+-..+|.|.+.++..+.
T Consensus 48 ~~~~~y~~~G~y~v~l~v~d~ 68 (81)
T cd00146 48 TVTHTYTKPGTYTVTLTVTNA 68 (81)
T ss_pred ceEEEcCCCcEEEEEEEEEeC
Confidence 345666788888888776543
No 178
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3.4.17.22), domain II. CPD differs from all other metallocarboxypeptidases in that it contains multiple CP-like domains. CPD belongs to the N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding CPs which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPD is a single-chain protein containing a signal peptide, three tandem repeats of CP-like domains separated by short bridge regions, followed by a transmembrane domain, and a C-terminal cytosolic tail. The first two CP-like domains of CPD contain all of the essential active site and substrate-binding residues, while the third CP-like domain lacks critical residues necessary for enzymatic activity and is inactive towards standard CP substrates. Domain I is optimally ac
Probab=22.96 E-value=3.8e+02 Score=24.14 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=21.0
Q ss_pred EECCCCEEEEEEeeCCCeeEEEEEEECccc
Q psy5367 171 YDHSDGTFTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 171 ~d~~dgty~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
....+|.|.. .-.||.|+|.|.+-|..
T Consensus 327 ~Td~~G~f~~---~l~pG~ytl~vs~~GY~ 353 (375)
T cd03863 327 TTYKDGDYWR---LLVPGTYKVTASARGYD 353 (375)
T ss_pred EECCCccEEE---ccCCeeEEEEEEEcCcc
Confidence 3456888986 36689999999998863
No 179
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=22.87 E-value=1.2e+02 Score=26.07 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=23.2
Q ss_pred EEECCCCEEEEEEee-----CCCeeEEEEEEECcc
Q psy5367 170 LYDHSDGTFTLNVKP-----QESGRHVLTVKYGDL 199 (201)
Q Consensus 170 v~d~~dgty~v~y~P-----~~~G~y~i~V~~~g~ 199 (201)
.....+|.|.+.|.| ...|.|.+.+..-+.
T Consensus 192 ~~~~~~g~~t~~~~~~~~~~~~d~~~~v~v~~tD~ 226 (317)
T PF13753_consen 192 TTVGADGTWTVTVTPSDLAGLADGTYTVTVTVTDA 226 (317)
T ss_pred eeecCCCcccccccccccccccCceEEEEEEeeec
Confidence 344578999999999 467899999886554
No 180
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=22.85 E-value=2.7e+02 Score=19.40 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=8.6
Q ss_pred EEEeeCC--CeeEEEEEEE
Q psy5367 180 LNVKPQE--SGRHVLTVKY 196 (201)
Q Consensus 180 v~y~P~~--~G~y~i~V~~ 196 (201)
+..+|.. .|.|.+.|.-
T Consensus 57 ~~GtP~~~~~g~~~i~v~a 75 (97)
T smart00736 57 LSGTPTNSDVGSLSLKVTA 75 (97)
T ss_pred EEEECCCCCCcEEEEEEEE
Confidence 3335554 5555555544
No 181
>KOG1155|consensus
Probab=22.81 E-value=1.7e+02 Score=27.67 Aligned_cols=59 Identities=24% Similarity=0.280 Sum_probs=41.2
Q ss_pred ccHHHHHHHHHhHHHhccHHHHHHHHHHHHhc---CCCC---CHHhHhHHHHHhhhhcccchhhH
Q psy5367 5 GEKEELVQRAKLAEQAERYDDMAAAMKAVTET---GVEL---SNEERNLLSVAYKNVVGARRSSW 63 (201)
Q Consensus 5 ~~r~~~~~~aklae~~ery~dm~~~mk~~~~~---~~~L---~~eERnLlsvayKn~i~~~R~sw 63 (201)
.+-.-++.+|||.|+.+++++.+.++++-++. -.+. +.+-|-.|..-||+.-.=.+++.
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 34567899999999999999999999887763 1222 33445566666777666555554
No 182
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=22.66 E-value=5.1e+02 Score=22.47 Aligned_cols=60 Identities=15% Similarity=0.087 Sum_probs=40.1
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhh-hcccchhhHHHHhhH
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKN-VVGARRSSWRVISSI 69 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn-~i~~~R~swR~i~~~ 69 (201)
+..+|+.+...+|||...+.++++++..|-=...-+.|+-..|++ -.+.-..++|-+...
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 446777777779999999999999998776666666666666654 222223444444433
No 183
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=22.55 E-value=99 Score=24.76 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhcCC--CCCHHhHhHHHHHhhhhcccchhhHHHHhhH
Q psy5367 25 DMAAAMKAVTETGV--ELSNEERNLLSVAYKNVVGARRSSWRVISSI 69 (201)
Q Consensus 25 dm~~~mk~~~~~~~--~L~~eERnLlsvayKn~i~~~R~swR~i~~~ 69 (201)
|+.+.+++++..+| +||.||+++|=----.....-++-=+.+.++
T Consensus 2 ~~~~~l~~i~~~~pl~~L~~eek~llW~~R~~~~~~p~aL~~~l~sv 48 (171)
T cd00872 2 EEREQLEAIIARDPLSELTEEDKELLWKLRHECRKKPQALPKLLLSV 48 (171)
T ss_pred hHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHhhCcHHHHHHHhhC
Confidence 45667788887765 7999999988654444444434433444443
No 184
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=22.44 E-value=3.4e+02 Score=20.99 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=3.7
Q ss_pred CCCCeeeEE
Q psy5367 150 AGPGELSAH 158 (201)
Q Consensus 150 aG~g~l~v~ 158 (201)
+|.-.++.+
T Consensus 62 ~Ga~NvsyE 70 (139)
T PF08750_consen 62 SGARNVSYE 70 (139)
T ss_pred CCcccceEE
Confidence 344444443
No 185
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=22.29 E-value=2.3e+02 Score=21.04 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.4
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHhcC
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTETG 37 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~~~ 37 (201)
-.+.+|+++-..+.|++.++.+++++...
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~ 78 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANA 78 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 45678888888999999999999988753
No 186
>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction
Probab=22.26 E-value=1.2e+02 Score=22.39 Aligned_cols=38 Identities=16% Similarity=0.244 Sum_probs=24.6
Q ss_pred eeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCeeEEE
Q psy5367 154 ELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGRHVL 192 (201)
Q Consensus 154 ~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~y~i 192 (201)
.+++.+..+.|...--+. +.--.|.+.|+|-.||.|+.
T Consensus 57 ~~~~~~hs~~~~~~~Gi~-~as~~~~I~ht~G~p~HFs~ 94 (104)
T PF05381_consen 57 HFQCTFHSDHGVLHYGIK-DASTVFTITHTPGPPGHFSL 94 (104)
T ss_pred heEEEEEcCCceEEeecC-CCceEEEEEeCCCCCCcccc
Confidence 355556666664333332 23356999999999999887
No 187
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=22.24 E-value=1.3e+02 Score=15.59 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=19.2
Q ss_pred HHhHHHhccHHHHHHHHHHHHhcCCCC
Q psy5367 14 AKLAEQAERYDDMAAAMKAVTETGVEL 40 (201)
Q Consensus 14 aklae~~ery~dm~~~mk~~~~~~~~L 40 (201)
.+-.-++++++++.+.++++.+.+-.+
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 344557889999999888887655433
No 188
>PRK10945 gene expression modulator; Provisional
Probab=22.23 E-value=2.3e+02 Score=19.53 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHhHHHhccHHHHHHHHHHHHhc-CCCCCHHhHhHHHHHhhh
Q psy5367 5 GEKEELVQRAKLAEQAERYDDMAAAMKAVTET-GVELSNEERNLLSVAYKN 54 (201)
Q Consensus 5 ~~r~~~~~~aklae~~ery~dm~~~mk~~~~~-~~~L~~eERnLlsvayKn 54 (201)
|.+++.++.-|-..-.+ -+.++++. +..|+.+|...|..|+-+
T Consensus 6 Mtk~dyL~~fRrcss~e-------TLEkvie~~~~~L~~~E~~~f~~AaDH 49 (72)
T PRK10945 6 LTKTDYLMRLRRCQTID-------TLERVIEKNKYELSDDELAVFYSAADH 49 (72)
T ss_pred ccHHHHHHHHHhcCcHH-------HHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 78888888766554333 34445543 678999999888777543
No 189
>PF11110 Phage_hub_GP28: Baseplate hub distal subunit; InterPro: IPR024342 Gp28 is a structural component of the central part of the bacteriophage T4 baseplate. The membrane-bound protein forms a complex with an another baseplate structural component, Gp27 []. This complex may function as an initiator of the central hub assembly.
Probab=22.14 E-value=99 Score=24.33 Aligned_cols=25 Identities=20% Similarity=0.339 Sum_probs=20.0
Q ss_pred HHHHHHHHHh-cCCCCCHHhHhHHHH
Q psy5367 26 MAAAMKAVTE-TGVELSNEERNLLSV 50 (201)
Q Consensus 26 m~~~mk~~~~-~~~~L~~eERnLlsv 50 (201)
--++|+.++. +.|.||.-||.++++
T Consensus 18 ~~~~l~~LidSI~p~LtaAE~D~V~L 43 (151)
T PF11110_consen 18 PDENLKILIDSIKPGLTAAERDFVSL 43 (151)
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3567777774 489999999999886
No 190
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=21.70 E-value=5.3e+02 Score=24.45 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=17.0
Q ss_pred EEEEEEeeCCCeeEEEEEEECcc
Q psy5367 177 TFTLNVKPQESGRHVLTVKYGDL 199 (201)
Q Consensus 177 ty~v~y~P~~~G~y~i~V~~~g~ 199 (201)
+-.+++.|+.+|.|+....|-|+
T Consensus 591 ~v~~~v~pq~tasvtf~a~kpgv 613 (637)
T COG4263 591 GVNMEVKPQRTASVTFYADKPGV 613 (637)
T ss_pred ceEEEEccCCceEEEEEccCCee
Confidence 35677888888888877766654
No 191
>TIGR03769 P_ac_wall_RPT actinobacterial surface-anchored protein domain. This model describes a repeat domain that one to three times in Actinobacterial proteins, some of which have LPXTG-type sortase recognition motifs for covalent attachment to the Gram-positive cell wall. Where it occurs with duplication in an LPXTG-anchored protein, it tends to be adjacent to the substrate-binding protein of the gene trio of an ABC transporter system, where that substrate-binding protein has a single copy of this same domain. This arrangement suggests a substrate-binding relay system, with the LPXTG protein acting as a substrate receptor.
Probab=21.58 E-value=1e+02 Score=18.60 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=9.8
Q ss_pred EeeCCCeeEEEEEEEC
Q psy5367 182 VKPQESGRHVLTVKYG 197 (201)
Q Consensus 182 y~P~~~G~y~i~V~~~ 197 (201)
|.=++||.|.|.+...
T Consensus 7 W~FT~PG~Y~l~~~a~ 22 (41)
T TIGR03769 7 WVFTKPGTYTLTVQAT 22 (41)
T ss_pred eeeCCCeEEEEEEEEE
Confidence 4445677777776653
No 192
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=21.48 E-value=1.7e+02 Score=20.09 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=20.8
Q ss_pred HHHHHHHhHHHhccHHHHHHHHHHHHh
Q psy5367 9 ELVQRAKLAEQAERYDDMAAAMKAVTE 35 (201)
Q Consensus 9 ~~~~~aklae~~ery~dm~~~mk~~~~ 35 (201)
+++-.|--++++|+|++.+.+=+..++
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456667777888999999987777665
No 193
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=21.36 E-value=1.2e+02 Score=28.50 Aligned_cols=34 Identities=15% Similarity=-0.075 Sum_probs=29.9
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCC
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGVELS 41 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~ 41 (201)
.-+++++++++..||+++.++++++.+.++|...
T Consensus 454 ~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 454 LNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4578999999999999999999999998877654
No 194
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=21.30 E-value=1.3e+02 Score=20.04 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=7.9
Q ss_pred chhhHHHHhh
Q psy5367 59 RRSSWRVISS 68 (201)
Q Consensus 59 ~R~swR~i~~ 68 (201)
++.+|..|..
T Consensus 37 k~~~W~~I~~ 46 (78)
T PF13873_consen 37 KRKAWEEIAE 46 (78)
T ss_pred HHHHHHHHHH
Confidence 6888998864
No 195
>PF11164 DUF2948: Protein of unknown function (DUF2948); InterPro: IPR021335 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.25 E-value=1.1e+02 Score=23.75 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=20.3
Q ss_pred EEEEEeeCCCeeEEEEEEECccc
Q psy5367 178 FTLNVKPQESGRHVLTVKYGDLC 200 (201)
Q Consensus 178 y~v~y~P~~~G~y~i~V~~~g~~ 200 (201)
-.|+|.|.+++...|...|.|.+
T Consensus 88 Lai~fe~~e~p~G~v~L~fAGgg 110 (138)
T PF11164_consen 88 LAITFEPGEAPAGHVLLTFAGGG 110 (138)
T ss_pred EEEEEEeCCCCCcEEEEEECCCc
Confidence 68899999999999999998864
No 196
>TIGR03773 anch_rpt_wall putative ABC transporter-associated repeat protein. Members of this protein family occur in genomes that contain a three-gene ABC transporter operon associated with the presence of domain TIGR03769. That domain occurs as a single-copy insert in the substrate-binding protein, and occurs in two or more copies in members of this protein family. Members of this family typically are encoded adjacent to the said transporter operon and may serve as a substrate receptor.
Probab=21.22 E-value=3.8e+02 Score=25.38 Aligned_cols=59 Identities=17% Similarity=0.228 Sum_probs=38.0
Q ss_pred CceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCC--EE--------EEEEeeCCCeeEEEEEEECc
Q psy5367 139 QDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDG--TF--------TLNVKPQESGRHVLTVKYGD 198 (201)
Q Consensus 139 ~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dg--ty--------~v~y~P~~~G~y~i~V~~~g 198 (201)
....|.+... .|+|.+.+.+.+.-|..+-.+.+..+| +| .+.|.=++||.|+|.+++.+
T Consensus 353 ~~V~l~l~~v-~GPG~~~~f~~g~fG~~~~~lfdS~~g~~~~~~~~~tHtH~NWaFTkPG~Y~l~~~~sa 421 (513)
T TIGR03773 353 GDVTWKLTSV-DGPGQMYVFLFGNFGGVAERIFDSAGSPAGYHVPGNTHAHPNWAFSKPGTYKLQVTQSA 421 (513)
T ss_pred CceEEEEeec-CCCcEEEEEEeCCCCCcccEEEeCCCCCcceeecCCcccccceecCCCcEEEEEEEEEE
Confidence 4456655543 488999999987766533344454443 12 34555679999999998754
No 197
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=21.10 E-value=1.8e+02 Score=28.56 Aligned_cols=32 Identities=22% Similarity=0.113 Sum_probs=25.2
Q ss_pred HHHHHHHHhHHHhccHHHHHHHHHHHHhcCCC
Q psy5367 8 EELVQRAKLAEQAERYDDMAAAMKAVTETGVE 39 (201)
Q Consensus 8 ~~~~~~aklae~~ery~dm~~~mk~~~~~~~~ 39 (201)
+-+..+|++.++.+||||.......+++..|+
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd 118 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPD 118 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 44667888888888888888888888877665
No 198
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=21.05 E-value=2.3e+02 Score=19.90 Aligned_cols=13 Identities=23% Similarity=0.360 Sum_probs=7.6
Q ss_pred CCCCEEEEEEeeC
Q psy5367 173 HSDGTFTLNVKPQ 185 (201)
Q Consensus 173 ~~dgty~v~y~P~ 185 (201)
...|+|+|.|.-.
T Consensus 69 l~~G~YtV~wrvv 81 (97)
T PF04234_consen 69 LPPGTYTVSWRVV 81 (97)
T ss_dssp --SEEEEEEEEEE
T ss_pred CCCceEEEEEEEE
Confidence 5567777777664
No 199
>PRK10301 hypothetical protein; Provisional
Probab=20.99 E-value=1.7e+02 Score=22.03 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=8.6
Q ss_pred CCCCEEEEEEeeC
Q psy5367 173 HSDGTFTLNVKPQ 185 (201)
Q Consensus 173 ~~dgty~v~y~P~ 185 (201)
...|+|+|.|.-.
T Consensus 96 L~~G~YtV~Wrvv 108 (124)
T PRK10301 96 LKPGTYTVDWHVV 108 (124)
T ss_pred CCCccEEEEEEEE
Confidence 4567777777654
No 200
>PF04465 DUF499: Protein of unknown function (DUF499); InterPro: IPR007555 This is a family of uncharacterised hypothetical prokaryotic proteins.
Probab=20.86 E-value=2.6e+02 Score=28.87 Aligned_cols=63 Identities=8% Similarity=-0.033 Sum_probs=38.8
Q ss_pred eeCCceeEEeeccCCCCCeeeEEEeCCCCcceeEEEECCCCEEEEEE---eeCCCeeEEEEEEECc
Q psy5367 136 TLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTLNV---KPQESGRHVLTVKYGD 198 (201)
Q Consensus 136 ~vg~~~~f~Vdt~~aG~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y---~P~~~G~y~i~V~~~g 198 (201)
..|....|.|.-...|.-.+.|.+....|.+..+---...+.+.++| .|.+.|.|.|.++..|
T Consensus 837 ~pge~~~~~v~~~~~g~~~~~v~l~~~~g~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~~~~ 902 (1035)
T PF04465_consen 837 KPGEVVEVKVVIKPLGNYRFEVELEVSYGELDSDEGILEGEPFKTTWRITIPKEKRIYRIEARSDG 902 (1035)
T ss_pred CCCCceEEEEEEEEcCCCceeEEEEeccceeeecceeecCCCceEEEEEeccCCCceEEEEEeccC
Confidence 34555666655555666667777777666432221111234567777 4788899999998865
No 201
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.79 E-value=96 Score=18.42 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=21.9
Q ss_pred HHHHHHhHHHhccHHHHHHHHHHHHhc
Q psy5367 10 LVQRAKLAEQAERYDDMAAAMKAVTET 36 (201)
Q Consensus 10 ~~~~aklae~~ery~dm~~~mk~~~~~ 36 (201)
+..++-+.-..|+|++.++=.++..++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456788888899999999888877765
No 202
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=20.76 E-value=4e+02 Score=22.16 Aligned_cols=16 Identities=25% Similarity=0.665 Sum_probs=12.0
Q ss_pred CCCEEEEEEeeCCCee
Q psy5367 174 SDGTFTLNVKPQESGR 189 (201)
Q Consensus 174 ~dgty~v~y~P~~~G~ 189 (201)
.+|.|+++......|.
T Consensus 168 p~G~Yt~~V~A~~~g~ 183 (225)
T PRK06655 168 PDGNYTIKASASVGGK 183 (225)
T ss_pred CCeeEEEEEEEEeCCc
Confidence 5788988887765555
No 203
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=20.72 E-value=4.2e+02 Score=20.77 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=18.1
Q ss_pred CCCEEEEEEeeCCCeeEEEEEE
Q psy5367 174 SDGTFTLNVKPQESGRHVLTVK 195 (201)
Q Consensus 174 ~dgty~v~y~P~~~G~y~i~V~ 195 (201)
.+|+|.+++....+|.|+....
T Consensus 71 ~~g~~~~~~~~~~~g~~~~~~~ 92 (215)
T PF10670_consen 71 QPGTYKLTVALRDPGYYSFTPE 92 (215)
T ss_pred CCCcEEEEEEccCCEEEEEecc
Confidence 7789999998888998887643
No 204
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.39 E-value=4.5e+02 Score=24.81 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhcCCCCCHHhHhHHHH---HhhhhcccchhhHHHHhhHhhhhc--cchHHHHHHHHHHHHHHH
Q psy5367 23 YDDMAAAMKAVTETGVELSNEERNLLSV---AYKNVVGARRSSWRVISSIEQKTE--GSERKQQMAREYREKVEK 92 (201)
Q Consensus 23 y~dm~~~mk~~~~~~~~L~~eERnLlsv---ayKn~i~~~R~swR~i~~~e~~~~--~~~~~~~~i~~yr~kIe~ 92 (201)
.++.-++|+.... ..++-.+|..+|-- +|..++...+.....|..-.|||. ....-..++++||.+++.
T Consensus 121 L~~v~~~~~~~~~-~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~a 194 (508)
T PF00901_consen 121 LEKVYKFMKGQEK-VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKIDA 194 (508)
T ss_pred HHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4445555554332 23344445556654 577788888899999988888875 223445688888887654
No 205
>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.
Probab=20.38 E-value=2.2e+02 Score=25.60 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=26.6
Q ss_pred CCeeeEEEeCCCCcceeEEEECCCCEEEEEE-ee---CCCeeEE
Q psy5367 152 PGELSAHCVGPNKVAYCELYDHSDGTFTLNV-KP---QESGRHV 191 (201)
Q Consensus 152 ~g~l~v~I~gp~g~~~~~v~d~~dgty~v~y-~P---~~~G~y~ 191 (201)
..++.+.|+.....+++.+...+++.+.|.| .| ..||.+-
T Consensus 299 ~~~~~vkiR~~~~~~~~~v~~~~~~~~~V~f~eP~~avaPGQ~a 342 (356)
T PF03054_consen 299 PLECQVKIRYRQKPVPCTVEPIGDGRLRVEFDEPQRAVAPGQSA 342 (356)
T ss_dssp EEEEEEESSTTS--EEEEEEE-SSS-EEEEEEEEEET--TTSEE
T ss_pred ceEEEEEEccCCCCCCEEEEEecCCeEEEEeCCCCCCCCCCcEE
Confidence 3456777777777899999999999999999 34 4788863
No 206
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=20.27 E-value=2.7e+02 Score=25.44 Aligned_cols=99 Identities=19% Similarity=0.251 Sum_probs=52.5
Q ss_pred HHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHhhhhccchHHHHHHHHHHHHHHH---H
Q psy5367 17 AEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAREYREKVEK---E 93 (201)
Q Consensus 17 ae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e~~~~~~~~~~~~i~~yr~kIe~---E 93 (201)
.||+.|.++..+|+|-+-. ..+..+-||=...|.+ |.+..+.|....++++. -
T Consensus 22 ~e~~~rd~nv~eyLkl~~~---------------------aDk~Q~~rIkq~Fekk---Nqksa~~i~~lqkkL~~y~~~ 77 (395)
T PF10267_consen 22 VEQTARDENVAEYLKLASN---------------------ADKQQAARIKQVFEKK---NQKSAQTIAQLQKKLEQYHKR 77 (395)
T ss_pred HHHHHHHhhHHHHHHHhhh---------------------ccHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999987543 2334455555555543 33444444444444433 1
Q ss_pred HHHhhhhhhhcccccccceEEEecccCCC----ccceeeCCCCCcceeCCceeE
Q psy5367 94 LRDICYDVLKRSQVKGCPLKVLVSAVCDA----TQVLCSGSGLSVGTLGQDIRS 143 (201)
Q Consensus 94 L~~iC~eil~l~~i~gSPf~v~v~~~~Da----skv~~~G~GL~~~~vg~~~~f 143 (201)
|.+++.. -.....|+.+........ .+++-.+||+...++..|-+|
T Consensus 78 l~ele~~----~~~~~~p~~~~~~~~~~l~~v~~~ik~g~sg~s~~v~skPrEf 127 (395)
T PF10267_consen 78 LKELEQG----GSSSRQPKEVLRDMGQGLKDVGGNIKGGLSGLSGAVVSKPREF 127 (395)
T ss_pred HHHHHhC----CCCCCCCchhhhccccccccccccccCCCcchhHHHHhCcHHH
Confidence 2222211 134445666654321111 125555677777778887777
No 207
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=20.25 E-value=1.1e+02 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHhcCCCCCHHhHhHHHHHhhhhcc
Q psy5367 32 AVTETGVELSNEERNLLSVAYKNVVG 57 (201)
Q Consensus 32 ~~~~~~~~L~~eERnLlsvayKn~i~ 57 (201)
+.-|.++.|+.++|-=|+-.|+++.-
T Consensus 6 ~FYEaD~~L~~~DR~eL~~~~q~i~~ 31 (152)
T PF07954_consen 6 EFYEADQKLDHEDRLELAKDLQSIAR 31 (152)
T ss_pred HHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 34467999999999988877777643
No 208
>PF02287 Dehydratase_SU: Dehydratase small subunit; InterPro: IPR003207 This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances [, ].; PDB: 1IWP_M 1MMF_M 1UC4_M 1EEX_M 3AUJ_G 1IWB_M 1DIO_G 1UC5_G 1EGM_G 1EGV_M ....
Probab=20.21 E-value=1.5e+02 Score=22.94 Aligned_cols=60 Identities=25% Similarity=0.252 Sum_probs=38.8
Q ss_pred ccHHHHHHHHHhHHHhccHHHHHHHHHHHHhcCCCCCHHhHhHHHHHhhhhcccchhhHHHHhhHh
Q psy5367 5 GEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIE 70 (201)
Q Consensus 5 ~~r~~~~~~aklae~~ery~dm~~~mk~~~~~~~~L~~eERnLlsvayKn~i~~~R~swR~i~~~e 70 (201)
++.+-|.+.|++|+.+||- -+...+.+..|+-. -+++|-|=-. |.+-++|++---|..|-
T Consensus 47 ItpetL~~QaqIAe~~gR~-~~a~NfrRAAELt~--VPD~riLeiY---naLRP~RStK~ELl~iA 106 (136)
T PF02287_consen 47 ITPETLEMQAQIAESAGRP-QLARNFRRAAELTA--VPDDRILEIY---NALRPYRSTKQELLAIA 106 (136)
T ss_dssp B-HHHHHHHHHHHHCTT-H-HHHHHHHHHHCCTT--S-HHHHHHHH---HHHSTTS--HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCH-HHHHHHHHHHhhhc--CCHHHHHHHH---HhhCCCcccHHHHHHHH
Confidence 3689999999999999996 67777888775411 1455544332 78888888766665553
No 209
>PF12080 GldM_C: GldM C-terminal domain; InterPro: IPR022719 This domain is found in bacteria at the C terminus of the GldM protein. This domain is typically between 169 to 182 amino acids in length and has two completely conserved residues (Y and N) that may be functionally important. GldM, is named for the member from Bacteriodetes Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes [].
Probab=20.21 E-value=4.5e+02 Score=20.99 Aligned_cols=67 Identities=19% Similarity=0.280 Sum_probs=35.0
Q ss_pred ceEEEecccCCCccceeeCCC--CCcceeCCceeEEeeccCCCCCeeeEEEe--CCCCcceeEEEECCCCEEEEEEeeCC
Q psy5367 111 PLKVLVSAVCDATQVLCSGSG--LSVGTLGQDIRSFIDTRRAGPGELSAHCV--GPNKVAYCELYDHSDGTFTLNVKPQE 186 (201)
Q Consensus 111 Pf~v~v~~~~Daskv~~~G~G--L~~~~vg~~~~f~Vdt~~aG~g~l~v~I~--gp~g~~~~~v~d~~dgty~v~y~P~~ 186 (201)
|..+.+ +...+.++.++++| |.. .|.. .|++.... +.+..+.|. .++|.- .-.+.-+|+|...|.-
T Consensus 17 pisIsv-pgv~~~~v~~s~~ggsl~~--~g~~-~y~~~P~~--g~~v~I~Vs~~~~~g~~----~~l~s~~FRVk~lP~P 86 (181)
T PF12080_consen 17 PISISV-PGVPSNKVPASATGGSLSK--SGGG-KYIARPTS--GKEVTITVSATNPDGKG----VSLGSFTFRVKPLPDP 86 (181)
T ss_pred cEEEEe-CCCCccccEEEeeCCEEEe--cCCC-cEEEEeCC--CCeEEEEEEEEecCCCc----eeecceEEEeeeCCCC
Confidence 344444 23556777777765 433 3444 56666543 344444444 444421 0124457888888865
Q ss_pred C
Q psy5367 187 S 187 (201)
Q Consensus 187 ~ 187 (201)
-
T Consensus 87 ~ 87 (181)
T PF12080_consen 87 T 87 (181)
T ss_pred c
Confidence 4
No 210
>smart00606 CBD_IV Cellulose Binding Domain Type IV.
Probab=20.19 E-value=3.5e+02 Score=19.58 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=24.6
Q ss_pred CCeeeEEEeCCCCcceeEEEECCCC---EE-EEEE-eeCCCeeEEEEEEECcc
Q psy5367 152 PGELSAHCVGPNKVAYCELYDHSDG---TF-TLNV-KPQESGRHVLTVKYGDL 199 (201)
Q Consensus 152 ~g~l~v~I~gp~g~~~~~v~d~~dg---ty-~v~y-~P~~~G~y~i~V~~~g~ 199 (201)
.+.+.+.+-++.|..-..+.-...| +| +++. .+...|.|.|.+.+.|.
T Consensus 67 ~~~i~v~~d~~~G~~~~~~~~p~tg~~~~~~~~~~~v~~~~G~~~l~~~~~~~ 119 (129)
T smart00606 67 GGSIELRLDSPTGTLVGTVDVPSTGGWQTYQTVSATVTLPAGVHDVYLVFKGG 119 (129)
T ss_pred CceEEEEECCCCCcEEEEEEeCCCCCCccCEEEEEEEccCCceEEEEEEEECC
Confidence 3456666666666422222222222 22 2222 23347999998887664
No 211
>cd00603 IPT_PCSR IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the macrophage-stimulating receptors and of fibrocystin. Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT_PCSR domain present preceeded by SEMA (semaphorin) and PSI (plexin, semaphorin, integrin) domains.
Probab=20.03 E-value=2.9e+02 Score=18.60 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=28.6
Q ss_pred eeEEeeccCCCCC--eeeEEEeCCCCcceeEEEECCCCEEEEEEeeCCCee--EEEEEEECcc
Q psy5367 141 IRSFIDTRRAGPG--ELSAHCVGPNKVAYCELYDHSDGTFTLNVKPQESGR--HVLTVKYGDL 199 (201)
Q Consensus 141 ~~f~Vdt~~aG~g--~l~v~I~gp~g~~~~~v~d~~dgty~v~y~P~~~G~--y~i~V~~~g~ 199 (201)
...+|...+-+.+ .+.|.+ |...|.+... +.+.-...+|...+. +.+.|.+.+.
T Consensus 17 t~vtI~G~~f~~~~~~~~V~i----g~~~C~~~~~-~~~~i~C~~p~~~~~~~~~v~v~v~~~ 74 (90)
T cd00603 17 TRLTITGSNLGSGSPRVRVTV----GGVPCKVLNV-SSTEIVCRTPAAATPGEGPVEVTVDGA 74 (90)
T ss_pred eEEEEEEECCCCCCceEEEEE----CCEECcEEec-CCCEEEEECCCCCCCCcEeEEEEECCc
Confidence 3444444443333 355555 2223444333 345566777776664 7788887664
No 212
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3.4.17.3) is an extracellular glycoprotein synthesized in the liver and released into the blood, where it is present in high concentrations. CPN belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs).The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. CPN plays an important role in protecting the body from excessive buildup of potentially deleterious peptides that normally act as local autocrine or paracrine hormones. It specifically removes C-terminal basic residues. As CPN can cleave lysine more avidly than arginine residues it is also called lysine carboxypeptidase. CPN substrates inclu
Probab=20.00 E-value=38 Score=30.78 Aligned_cols=31 Identities=35% Similarity=0.526 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHhcCCCC--------CHHhHhHHHHHh
Q psy5367 22 RYDDMAAAMKAVTETGVEL--------SNEERNLLSVAY 52 (201)
Q Consensus 22 ry~dm~~~mk~~~~~~~~L--------~~eERnLlsvay 52 (201)
+|++|.++|+++.+..|.+ |.|-|.|+.+-.
T Consensus 3 ~y~em~~~L~~l~~~yP~i~~l~sIG~SveGR~i~~l~i 41 (392)
T cd03864 3 RYDDLVRALYAVQNECPYITRIYSIGRSVEGRHLYVLEF 41 (392)
T ss_pred CHHHHHHHHHHHHHHCCCeEEEEEeeeccCCceEEEEEe
Confidence 6999999999999888877 668898877754
Done!