RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5367
(201 letters)
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics
consortium, MA alpha, phosphoserine, phosphothreonine;
HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A*
2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A*
2btp_A*
Length = 248
Score = 144 bits (364), Expect = 2e-43
Identities = 75/100 (75%), Positives = 85/100 (85%), Gaps = 2/100 (2%)
Query: 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 65
++E+LVQ+A+LAEQAERYDDMAAAMK VTE LSNEERNLLSVAYKNVVGARRSSWRV
Sbjct: 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRV 62
Query: 66 ISSIEQKTE--GSERKQQMAREYREKVEKELRDICYDVLK 103
ISSIEQKT G+E+K +M R YREK+EKEL +C DVL
Sbjct: 63 ISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLS 102
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3,
struc genomics, structural genomics consortium, SGC,
protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Length = 260
Score = 138 bits (347), Expect = 1e-40
Identities = 62/107 (57%), Positives = 72/107 (67%), Gaps = 5/107 (4%)
Query: 2 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET---GVELSNEERNLLSVAYKNVVGA 58
S +E V AKLAEQAERYD+MA MK V E EL+ EERNLLSVAYKN VG+
Sbjct: 23 DSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGS 82
Query: 59 RRSSWRVISSIEQKTE--GSERKQQMAREYREKVEKELRDICYDVLK 103
RRSSWR+ISS+EQK +E +M +YR KVE EL DIC D+L
Sbjct: 83 RRSSWRIISSVEQKEHSRNAEDASKMCGKYRSKVEAELTDICNDILT 129
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein,
secreted, prote binding, signaling protein; HET: SEP;
1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A*
3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A*
3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A
1a38_A 1a4o_A* 1ib1_A* ...
Length = 236
Score = 136 bits (342), Expect = 3e-40
Identities = 67/103 (65%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
Query: 3 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSS 62
S E+ L+Q+AKLAEQAERY+DMAA MK E G ELS EERNLLSVAYKNVVG +R++
Sbjct: 4 GSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAA 63
Query: 63 WRVISSIEQKTE--GSERKQQMAREYREKVEKELRDICYDVLK 103
WRV+SSIEQK+ GSE K REYREKVE EL+ +C VL
Sbjct: 64 WRVLSSIEQKSNEEGSEEKGPEVREYREKVETELQGVCDTVLG 106
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell
regulator protein, cryptospo parvum, structural
genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP:
a.118.7.1
Length = 227
Score = 133 bits (337), Expect = 2e-39
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 6 EKEELVQRAKLAEQAERYDDMAAAMKAVTETG----VELSNEERNLLSVAYKNVVGARRS 61
E+ RA++ E +D M A+K++ E +EER+LL++ K+ + R+
Sbjct: 5 ERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRT 64
Query: 62 SWRVISSIEQKTEGSERKQQMAREYREKVEKELRDICYDVLK 103
+ + K ++ ++ EY + K+++
Sbjct: 65 MTSQVLQEQTKQLNNDELVKICSEYVFSLRKDIKAFLQSFED 106
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3,
phosphoserine, structural GE consortium, SGC, ywhae;
HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A*
3m50_A* 3m51_A* 3axy_C*
Length = 234
Score = 132 bits (333), Expect = 8e-39
Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 2/103 (1%)
Query: 3 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRSS 62
S ++E+LV +AKLAEQAERYD+M +MK V VEL+ EERNLLSVAYKNV+GARR+S
Sbjct: 1 SMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRAS 60
Query: 63 WRVISSIEQKTE--GSERKQQMAREYREKVEKELRDICYDVLK 103
WR+ISSIEQK E G E K +M REYR+ VE EL+ IC D+L
Sbjct: 61 WRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILD 103
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling
protein, signaling protein-protei complex; HET: SEP;
1.90A {Homo sapiens}
Length = 261
Score = 133 bits (334), Expect = 9e-39
Identities = 67/105 (63%), Positives = 81/105 (77%), Gaps = 2/105 (1%)
Query: 1 MSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARR 60
M S ++E+LV +AKLAEQAERYD+M +MK V VEL+ EERNLLSVAYKNV+GARR
Sbjct: 25 MGSMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARR 84
Query: 61 SSWRVISSIEQKTE--GSERKQQMAREYREKVEKELRDICYDVLK 103
+SWR+ISSIEQK E G E K +M REYR+ VE EL+ IC D+L
Sbjct: 85 ASWRIISSIEQKEENKGGEDKLKMIREYRQMVETELKLICCDILD 129
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom
structural genomics consortium, SGC; HET: SEP; 2.08A
{Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Length = 268
Score = 129 bits (326), Expect = 2e-37
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 2 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRS 61
+ + E RAKLA+ Y D+ +K +TE+ N LL+ + +N V + R+
Sbjct: 24 EKNMKLSEGAYRAKLADMVGNYKDV---IKVLTESSDFRDNSLILLLAGSLRNRVTSIRN 80
Query: 62 SWRVISSIEQKTE----GSERKQQMAREYREKVEKELRDICYDVLK 103
S + I S E+K + Q+ + + E+ + DV++
Sbjct: 81 SLKSIKSQEEKLRKEKSLNNEFIQVIEDIKRDFEESILLESEDVIR 126
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family,
activating drug; HET: TPO; 2.3A {Nicotiana tabacum}
SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Length = 260
Score = 126 bits (316), Expect = 5e-36
Identities = 60/106 (56%), Positives = 74/106 (69%), Gaps = 4/106 (3%)
Query: 2 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET--GVELSNEERNLLSVAYKNVVGAR 59
+ +EE V AKLAEQAERY++M M+ V+ + EL+ EERNLLSVAYKNV+GAR
Sbjct: 3 VAPTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGAR 62
Query: 60 RSSWRVISSIEQKTE--GSERKQQMAREYREKVEKELRDICYDVLK 103
R+SWR+ISSIEQK E G+E REYR K+E EL IC +LK
Sbjct: 63 RASWRIISSIEQKEESRGNEEHVNSIREYRSKIENELSKICDGILK 108
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 113
Score = 86.7 bits (215), Expect = 2e-22
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 117 SAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP-NKVAYCELYDHSD 175
S D ++V+ SG GL G +G+ +D AGPG L V A + ++ D
Sbjct: 6 SGPFDPSKVVASGPGLEHGKVGEAGLLSVDCSEAGPGALGLEAVSDSGTKAEVSIQNNKD 65
Query: 176 GTFTLNVKPQESGRHVLTVKYGD 198
GT+ + P +G + LT+KYG
Sbjct: 66 GTYAVTYVPLTAGMYTLTMKYGG 88
Score = 27.4 bits (61), Expect = 1.5
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSG 129
V P +V V D + SG
Sbjct: 90 LVPHFPARVKVEPAVDTSSGPSSG 113
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation,
immun like, cytoskeleton, actin-binding, cell junction,
shape; HET: CME; 2.44A {Homo sapiens}
Length = 100
Score = 86.3 bits (214), Expect = 2e-22
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 119 VCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP-NKVAYCELYDHSDGT 177
DA++V CSG GL T G+ + +D AG EL+ A + DH DGT
Sbjct: 5 PFDASKVKCSGPGLERATAGEVGQFQVDCSSAGSAELTIEICSEAGLPAEVYIQDHGDGT 64
Query: 178 FTLNVKPQESGRHVLTVKYGD 198
T+ P G + +T+KYG
Sbjct: 65 HTITYIPLCPGAYTVTIKYGG 85
>2bp3_A Filamin A; structural protein, cytoskeleton/complex, actin binding
protein, cytoskeleton, complex; 2.32A {Homo sapiens}
SCOP: b.1.18.10 PDB: 2aav_A
Length = 97
Score = 78.2 bits (193), Expect = 2e-19
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 118 AVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGT 177
A+ + V G GL+ G + + ++T+ AG G LS GP+K D+ DGT
Sbjct: 2 AMVNCGHVTAYGPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKA-EISCTDNQDGT 60
Query: 178 FTLNVKPQESGRHVLTVKYGD 198
+++ P G + + VKY +
Sbjct: 61 CSVSYLPVLPGDYSILVKYNE 81
>2eec_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 76.5 bits (188), Expect = 2e-18
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 106 QVKGCPLKVLVSAVC---DATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP 162
KV V + V G+GL GT G FI+T RAGPG LS GP
Sbjct: 2 SSGSSGFKVRVGEPGQAGNPALVSAYGTGLEGGTTGIQSEFFINTTRAGPGTLSVTIEGP 61
Query: 163 NKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
+KV + + +G + + P G ++++VKYG
Sbjct: 62 SKVKM-DCQETPEG-YKVMYTPMAPGNYLISVKYGG 95
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 75.7 bits (186), Expect = 4e-18
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSGSGLSVGTL--GQDIRSFIDTRRAGPGELSAHCVGPN 163
P KV V DA++V SG GLS + + ID R AG G L+
Sbjct: 5 SSGRSPFKVKVLPTYDASKVTASGPGLSSYGVPASLPVDFAIDARDAGEGLLAVQITDQE 64
Query: 164 -KVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
K ++D+ DGT+ + P ++GR+++ V YG
Sbjct: 65 GKPKRAIVHDNKDGTYAVTYIPDKTGRYMIGVTYGG 100
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 108
Score = 74.4 bits (183), Expect = 8e-18
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 116 VSAVCDATQVLCSGSGLSVGTLGQDIRSF-IDTRRAGPGELSAHCVGPNK-VAYCELYDH 173
S V D ++V +G GL G + ++SF +D+ +AG L +GP V + D+
Sbjct: 5 SSGVVDPSKVKIAGPGLGSGVRARVLQSFTVDSSKAGLAPLEVRVLGPRGLVEPVNVVDN 64
Query: 174 SDGTFTLNVKPQESGRHVLTVKYGD 198
DGT T+ P + G ++++VKY D
Sbjct: 65 GDGTHTVTYTPSQEGPYMVSVKYAD 89
>2di9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 131
Score = 74.2 bits (182), Expect = 1e-17
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 107 VKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVA 166
V G P V S D ++V G GL G +G+ IDT+ AG G L GP +
Sbjct: 16 VPGSPYTVEASLPPDPSKVKAHGPGLEGGLVGKPAEFTIDTKGAGTGGLGLTVEGPCEAK 75
Query: 167 YCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
E D+ DGT +++ P + G + + + + +
Sbjct: 76 -IECSDNGDGTCSVSYLPTKPGEYFVNILFEE 106
Score = 27.9 bits (62), Expect = 1.1
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSG 129
+ G P K + D + SG
Sbjct: 108 HIPGSPFKADIEMPFDPSSGPSSG 131
>2j3s_A Filamin-A; cytoskeleton, phosphorylation, structural protein; 2.5A
{Homo sapiens} SCOP: b.1.18.10 b.1.18.10 PDB: 2e9i_A
Length = 288
Score = 76.1 bits (186), Expect = 5e-17
Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 118 AVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGT 177
A+ DA++V SG GL G + IDTR AG G LS GP+KV D DGT
Sbjct: 2 AMGDASRVRVSGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGPSKVD-INTEDLEDGT 60
Query: 178 FTLNVKPQESGRHVLTVKYGD 198
+ P E G +++ +K+ D
Sbjct: 61 CRVTYCPTEPGNYIINIKFAD 81
Score = 56.1 bits (134), Expect = 7e-10
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSGS-GLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP-N 163
V G P V V+ + + SV +G + +++A P
Sbjct: 83 HVPGSPFSVKVTGEGRVKESITRRRRAPSVANVGSHCDLSLKIPEISIQDMTAQVTSPSG 142
Query: 164 KVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
K E+ + + T+ + P E G H ++VKY
Sbjct: 143 KTHEAEIVEGENHTYCIRFVPAEMGTHTVSVKYKG 177
Score = 46.5 bits (109), Expect = 1e-06
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 107 VKGCPLKVLVSAVCDATQVLC--SGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNK 164
V G P + V + + G GL G I TR AG G L+ GP+K
Sbjct: 180 VPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSK 239
Query: 165 VAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
A D DG+ + QE G + ++VK+ +
Sbjct: 240 -AEISFEDRKDGSCGVAYVVQEPGDYEVSVKFNE 272
>2w0p_A Filamin-A; alternative splicing, cytoskeleton/complex,
phosphoprotein, disease mutation, immunoglobulin like,
zinc, complex; 1.90A {Homo sapiens} SCOP: b.1.18.10 PDB:
2brq_A* 2jf1_A 3isw_A
Length = 94
Score = 71.7 bits (176), Expect = 5e-17
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 121 DATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFTL 180
A +V G GL G I TR AG G L+ GP+K D DG+ +
Sbjct: 2 GAHKVRAGGPGLERAEAGVPAEFSIWTREAGAGGLAIAVEGPSKAE-ISFEDRKDGSCGV 60
Query: 181 NVKPQESGRHVLTVKYGD 198
QE G + ++VK+ +
Sbjct: 61 AYVVQEPGDYEVSVKFNE 78
>2dic_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 105
Score = 71.3 bits (175), Expect = 9e-17
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 116 VSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSD 175
S C ++V G GL + + TR AG G L GP++ D+ D
Sbjct: 5 SSGGCQPSRVQAQGPGLKEAFTNKPNVFTVVTRGAGIGGLGITVEGPSESK-INCRDNKD 63
Query: 176 GTFTLNVKPQESGRHVLTVKYGD 198
G+ + P G + + + YG
Sbjct: 64 GSCSAEYIPFAPGDYDVNITYGG 86
>3cnk_A Filamin-A; FLNA24, X-RAY crystalography, homodimer, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; 1.65A {Homo sapiens}
Length = 89
Score = 70.9 bits (174), Expect = 1e-16
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 125 VLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAY-CELYDHSDGTFTLNVK 183
V+ G GLS +GQ +D +AG L GP + ++++
Sbjct: 2 VVAKGLGLSKAYVGQKSSFTVDCSKAGNNMLLVGVHGPRTPCEEILVKHVGSRLYSVSYL 61
Query: 184 PQESGRHVLTVKYGD 198
++ G + L VK+G
Sbjct: 62 LKDKGEYTLVVKWGH 76
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 188
Score = 73.4 bits (179), Expect = 1e-16
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Query: 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP-NKVAYCELYDHSDGTF 178
+ L +GL V + GE++ P KVA + D+ DGT
Sbjct: 3 MAPERPLVGVNGLDVT--SLRPFDLVIPFTIKKGEITGEVRMPSGKVAQPTITDNKDGTV 60
Query: 179 TLNVKPQESGRHVLTVKYGD 198
T+ P E+G H + ++Y +
Sbjct: 61 TVRYAPSEAGLHEMDIRYDN 80
Score = 36.8 bits (84), Expect = 0.002
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 105 SQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNK 164
+ G PL+ V V G GL+ G + + ++T+ AG G LS GP+K
Sbjct: 81 MHIPGSPLQFYVDYVNCGHVTAY-GPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSK 139
Query: 165 VAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
D+ DGT +++ P G + + VKY +
Sbjct: 140 AE-ISCTDNQDGTCSVSYLPVLPGDYSILVKYNE 172
>2eea_A Filamin-B; beta-sandwich, immunoglobulin-like fold, interaction
with GP1BA, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 115
Score = 71.4 bits (175), Expect = 1e-16
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 107 VKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVA 166
PL+ V+ ++ V G GL G + I T AG G L GP+K
Sbjct: 7 GPESPLQFYVNYP-NSGSVSAYGPGLVYGVANKTATFTIVTEDAGEGGLDLAIEGPSKAE 65
Query: 167 YCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
D+ DGT T+ P G + + VKY D
Sbjct: 66 I-SCIDNKDGTCTVTYLPTLPGDYSILVKYND 96
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 93
Score = 69.8 bits (171), Expect = 3e-16
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 131 GLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP-NKVAYCELYDHSDGTFTLNVKPQESGR 189
G S + + + + GEL+ P K A + D+ DGT T+ P E G
Sbjct: 1 GSSGSSGLRPF-NLVIPFAVQKGELTGEVRMPSGKTARPNITDNKDGTITVRYAPTEKGL 59
Query: 190 HVLTVKYGD 198
H + +KY
Sbjct: 60 HQMGIKYDG 68
>2d7o_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 70.2 bits (172), Expect = 4e-16
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 114 VLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDH 173
S ++ V G GLS G + + I T+ AG G LS GP+K A D+
Sbjct: 3 SGSSGAINSRHVSAYGPGLSHGMVNKPATFTIVTKDAGEGGLSLAVEGPSK-AEITCKDN 61
Query: 174 SDGTFTLNVKPQESGRHVLTVKYGD 198
DGT T++ P G + + V++ D
Sbjct: 62 KDGTCTVSYLPTAPGDYSIIVRFDD 86
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 115
Score = 69.9 bits (171), Expect = 6e-16
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 116 VSAVCDATQVLCSGSGLSVGTL--GQDIRSFIDTRRAGPGELSAHCVGPN-KVAYCELYD 172
S DA++V SG GL+ + + ID R AG G L+ + P K + D
Sbjct: 5 SSGAHDASKVRASGPGLNASGIPASLPVEFTIDARDAGEGLLTVQILDPEGKPKKANIRD 64
Query: 173 HSDGTFTLNVKPQESGRHVLTVKYGD 198
+ DGT+T++ P SGR+ +T+KYG
Sbjct: 65 NGDGTYTVSYLPDMSGRYTITIKYGG 90
Score = 26.7 bits (59), Expect = 2.8
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSG 129
++ P ++ DA+ SG
Sbjct: 92 EIPYSPFRIHALPTGDASSGPSSG 115
>2di8_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 111
Score = 69.4 bits (170), Expect = 7e-16
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 116 VSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSD 175
S + DA + G GLS G + +DTR AG G +S GP+KV + D D
Sbjct: 5 SSGIGDARRAKVYGRGLSEGRTFEMSDFIVDTRDAGYGGISLAVEGPSKVD-IQTEDLED 63
Query: 176 GTFTLNVKPQESGRHVLTVKYGD 198
GT ++ P G ++++ K+ D
Sbjct: 64 GTCKVSYFPTVPGVYIVSTKFAD 86
>1v05_A Filamin C; actin-binding protein, immunoglobulin; 1.43A {Homo
sapiens} SCOP: b.1.18.10 PDB: 2eed_A
Length = 96
Score = 68.3 bits (167), Expect = 1e-15
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAY-CELYDHSDGTF 178
DA++V+ G GLS +GQ +D +AG + GP + + +
Sbjct: 4 SDASKVVTRGPGLSQAFVGQKNSFTVDCSKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVY 63
Query: 179 TLNVKPQESGRHVLTVKYGD 198
+ +E G ++L VK+GD
Sbjct: 64 NVTYTVKEKGDYILIVKWGD 83
>2ee6_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 105
Score = 67.9 bits (166), Expect = 2e-15
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 117 SAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKVAYCELYDHSDG 176
S A +V G GL G G I TR AG G LS GP+K DH +G
Sbjct: 6 SGEGGAHKVRAGGPGLERGEAGVPAEFSIWTREAGAGGLSIAVEGPSKAE-ITFDDHKNG 64
Query: 177 TFTLNVKPQESGRHVLTVKYGD 198
+ ++ QE G + +++K+ D
Sbjct: 65 SCGVSYIAQEPGNYEVSIKFND 86
>2nqc_A Filamin-C; immunoglobulin, metal binding, immune system; 2.05A
{Homo sapiens} SCOP: b.1.18.10 PDB: 2d7q_A 2k3t_A
Length = 138
Score = 68.4 bits (167), Expect = 3e-15
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 105 SQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNK 164
+G + A D V G GL GT G ++T AG G LS GP+K
Sbjct: 29 QMGRGSRVGEQSQA-GDPGLVSAYGPGLEGGTTGVSSEFIVNTLNAGSGALSVTIDGPSK 87
Query: 165 VAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
V + + +G + P G +++ +KYG
Sbjct: 88 VQ-LDCRECPEG-HVVTYTPMAPGNYLIAIKYGG 119
Score = 29.5 bits (66), Expect = 0.38
Identities = 5/26 (19%), Positives = 9/26 (34%)
Query: 173 HSDGTFTLNVKPQESGRHVLTVKYGD 198
H + SG H+ ++ G
Sbjct: 3 HMASMTGGQQMGRGSGSHMASMTGGQ 28
>2dib_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 128
Score = 67.6 bits (165), Expect = 5e-15
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRS--FIDTR---RAGPGELSAHCV 160
P +V V D +++ G G+ + ++ + +D+R + G + AH
Sbjct: 5 SSGHFPARVKVEPAVDTSRIKVFGPGIEGKDVFREATTDFTVDSRPLTQVGGDHIKAHIA 64
Query: 161 GPNKVAY-CELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
P+ + C + D++DGT+ + P E G HV+ V Y D
Sbjct: 65 NPSGASTECFVTDNADGTYQVEYTPFEKGLHVVEVTYDD 103
Score = 28.3 bits (63), Expect = 0.95
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSG 129
+ P KV V+ C + SG
Sbjct: 105 PIPNSPFKVAVTEGCQPSSGPSSG 128
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 95
Score = 66.4 bits (162), Expect = 7e-15
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 127 CSGSGLSVGTLGQDIR--SFIDTRRAGPGELSAHCVGP-NKVAYCELYDHSDGTFTLNVK 183
SGS G + + GE++ P K A E+ D+ DGT T+
Sbjct: 2 SSGSSGVSDMNGLGFKPFDLVIPFAVRKGEITGEVHMPSGKTATPEIVDNKDGTVTVRYA 61
Query: 184 PQESGRHVLTVKYGD 198
P E G H + +KY
Sbjct: 62 PTEVGLHEMHIKYMG 76
>2k9u_A Gamma filamin; cytoskeletal complex, alternative splicing, cell
adhesion, cell junction, cell shape, cytoplasm,
cytoskeleton; NMR {Homo sapiens}
Length = 119
Score = 66.4 bits (162), Expect = 1e-14
Identities = 29/94 (30%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 109 GCPLK----VLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNK 164
G P V A +V G+GL G G I TR AG G LS GP+K
Sbjct: 1 GIPEFFQFTVGPLGEGGAHKVRAGGTGLERGVAGVPAEFSIWTREAGAGGLSIAVEGPSK 60
Query: 165 VAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
D DG+ ++ QE G + +++K+ D
Sbjct: 61 AE-IAFEDRKDGSCGVSYVVQEPGDYEVSIKFND 93
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 102
Score = 66.0 bits (161), Expect = 1e-14
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 128 SGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPN-KVAYCELYDHSDGTFTLNVKPQE 186
SG SV T+G + ++SAH P+ +V E+ + + PQE
Sbjct: 6 SGRAPSVATVGSICDLNLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQE 65
Query: 187 SGRHVLTVKYGD 198
G H ++VKY
Sbjct: 66 MGVHTVSVKYRG 77
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 124
Score = 66.0 bits (161), Expect = 2e-14
Identities = 20/87 (22%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 114 VLVSAVCDATQVLCSGSGLSVG-TLGQDIRSFIDTRRAGPGELSAHCVGP-NKVAYCELY 171
S DA++ L +G G++ G+++ +D + AG G+++ + P A ++
Sbjct: 3 SGSSGTGDASKCLATGPGIASTVKTGEEVGFVVDAKTAGKGKVTCTVLTPDGTEAEADVI 62
Query: 172 DHSDGTFTLNVKPQESGRHVLTVKYGD 198
++ DGT+ + + G +V+ V++G
Sbjct: 63 ENEDGTYDIFYTAAKPGTYVIYVRFGG 89
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 65.1 bits (158), Expect = 2e-13
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 128 SGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPN-KVAYCELYDHSDGTFTLNVKPQE 186
+S +G I+ L+A V P+ + C L +G ++ P+E
Sbjct: 6 DSMRMSHLKVGSAADIPINISETDLSLLTATVVPPSGREEPCLLKRLRNGHVGISFVPKE 65
Query: 187 SGRHVLTVKYGD 198
+G H++ VK
Sbjct: 66 TGEHLVHVKKNG 77
Score = 53.2 bits (127), Expect = 4e-09
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 106 QVKGCPLKVLVS--AVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPN 163
V P+ V++S + DA++V SG GL G + IDTR AG G LS GP+
Sbjct: 79 HVASSPIPVVISQSEIGDASRVRVSGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGPS 138
Query: 164 KVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
KV D DGT + P E G +++ +K+ D
Sbjct: 139 KVD-INTEDLEDGTCRVTYCPTEPGNYIINIKFAD 172
>2dmc_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10
Length = 116
Score = 61.0 bits (148), Expect = 1e-12
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 105 SQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPN- 163
S + G P ++ S LG +D L+A P+
Sbjct: 6 SGIPGSPFTAKITD---------DSRRCSQVKLGSAADFLLDISETDLSSLTASIKAPSG 56
Query: 164 KVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
+ C L + ++ P+E G H++++K
Sbjct: 57 RDEPCLLKRLPNNHIGISFIPREVGEHLVSIKKNG 91
>1qfh_A Protein (gelation factor); actin binding protein, immunoglobulin,
ABP- 120; 2.20A {Dictyostelium discoideum} SCOP:
b.1.18.10 b.1.18.10
Length = 212
Score = 61.8 bits (149), Expect = 3e-12
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 8/86 (9%)
Query: 121 DATQVLCSGSGLSVGTLGQDIRSFIDTR-------RAGPGELSAHCVGP-NKVAYCELYD 172
A G GL I G GP V ++ D
Sbjct: 5 SAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTD 64
Query: 173 HSDGTFTLNVKPQESGRHVLTVKYGD 198
++DGT+ + G + + V
Sbjct: 65 NNDGTYGVVYDAPVEGNYNVNVTLRG 90
Score = 34.0 bits (77), Expect = 0.016
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKV 165
+K P+ V + +V + + G + GP +
Sbjct: 92 PIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKN----KKGEVKTYGGDKFEVSITGPAEE 147
Query: 166 AYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
+ D+ DGT+T +GR VK
Sbjct: 148 ITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG 180
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like
fold, filamin domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 113
Score = 59.0 bits (143), Expect = 7e-12
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 117 SAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRA-------GPGELSAHCVGP---NKVA 166
S D + + G L Q + + A G + V +
Sbjct: 6 SGEVDPAKCVLQGEDLHRAREKQTASFTLLCKDAAGEIMGRGGDNVQVAVVPKDKKDSPV 65
Query: 167 YCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
+ D+ DGT+ ++ P+E G + + V +
Sbjct: 66 RTMVQDNKDGTYYISYTPKEPGVYTVWVCIKE 97
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.18.10 PDB: 2eeb_A
Length = 112
Score = 58.7 bits (142), Expect = 8e-12
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 116 VSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGP-NKVAYCELYDHS 174
S DA ++ + + + Q SF G + A P V C + +
Sbjct: 5 SSGSDDARRLTVTSLQETGLKVNQPA-SFAVQLNGARGVIDARVHTPSGAVEECYVSELD 63
Query: 175 DGTFTLNVKPQESGRHVLTVKYGD 198
T+ P E+G H + VK+
Sbjct: 64 SDKHTIRFIPHENGVHSIDVKFNG 87
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain,
structural protein; 2.80A {Dictyostelium discoideum}
SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Length = 311
Score = 53.1 bits (126), Expect = 9e-09
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 120 CDATQVLCSGSGLSVGTLGQDIRSFIDTR-------RAGPGELSAHCVGPNKVAYCELYD 172
D + G GL G Q + I G GP V + D
Sbjct: 3 ADPEKSYAEGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPAPVDPVMV-D 61
Query: 173 HSDGTFTLNVKPQESGRHVLTVKYGD 198
+ DGT+ + +P+E+G +V+ +
Sbjct: 62 NGDGTYDVEFEPKEAGDYVINLTLDG 87
Score = 50.4 bits (119), Expect = 7e-08
Identities = 20/102 (19%), Positives = 28/102 (27%), Gaps = 8/102 (7%)
Query: 105 SQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTR-------RAGPGELSA 157
V G P V V A G GL I G
Sbjct: 88 DNVNGFPKTVTVKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEV 147
Query: 158 HCVGP-NKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
GP V ++ D++DGT+ + G + + V
Sbjct: 148 AINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRG 189
Score = 43.9 bits (102), Expect = 1e-05
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 106 QVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGELSAHCVGPNKV 165
+K P+ V + +V + + + G + GP +
Sbjct: 191 PIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKG----EVKTYGGDKFEVSITGPAEE 246
Query: 166 AYCELYDHSDGTFTLNVKPQESGRHVLTVKYGD 198
+ D+ DGT+T +GR VK
Sbjct: 247 ITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNG 279
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 41.5 bits (97), Expect = 2e-05
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 13/91 (14%)
Query: 121 DATQVLCSGSGLSVGTLGQDIRSFID---------TRRAGPGELSAHCVGPNK---VAYC 168
+ G GL + +I T G P +
Sbjct: 16 SPEKSEIWGPGLKADVVLPARYFYIQAVDTSGNKFTSSPGEKVFQVKVSAPEEQFTRVGV 75
Query: 169 ELYDHSDGTFTLNVKPQES-GRHVLTVKYGD 198
++ D DG+F + + S + +K+
Sbjct: 76 QVLDRKDGSFIVRYRMYASYKNLKVEIKFQG 106
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 4e-05
Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 61/231 (26%)
Query: 2 SSSGEKEELVQRAKLAEQAERY---DD---MAAAMKAVTETGVELSNEERNLLSVAYKNV 55
S G+ ++++ L E Y +D +AA + +T + + + L+
Sbjct: 75 SKVGQFDQVLNLC-LTEFENCYLEGNDIHALAAKLLQENDTTLV---KTKELIKNYITAR 130
Query: 56 VGARRSSWRVISS--IEQKTEGSERK------QQMAREYREKVEKELRDICY-------- 99
+ A+R + +S EG+ + Q +Y E ELRD+ Y
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE----ELRDL-YQTYHVLVG 185
Query: 100 DVLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLSVGTLGQDIRSFIDTRRAGPGE---LS 156
D++K S L L+ DA +V T G +I +++ P + LS
Sbjct: 186 DLIKFSAET---LSELIRTTLDAEKVF---------TQGLNILEWLENPSNTPDKDYLLS 233
Query: 157 AHCVGP--------NKVAYCELYDHSDGTFTLNVKPQESGRHVLTVKYGDL 199
P + V +L + G ++ G T L
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPG----ELRSYLKG---ATGHSQGL 277
Score = 32.7 bits (74), Expect = 0.075
Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 62/148 (41%)
Query: 9 ELV-QRAKLAEQAERYDDMAA---AMKAVTETGVELSNEERNLLSVAYKNVVGARRSSWR 64
E+V R + A D++ M A+ R
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYGMIAINPG---------------------------R 1816
Query: 65 VISSIEQKTEGSERKQQMAREYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAV---CD 121
V +S ++ L+ + V KR+ LV V +
Sbjct: 1817 VAASFS--------------------QEALQYVVERVGKRTGW-------LVEIVNYNVE 1849
Query: 122 ATQVLCSGSGLSVGTLGQDIRSFIDTRR 149
Q + +G ++ T+ ++ +FI ++
Sbjct: 1850 NQQYVAAGDLRALDTVT-NVLNFIKLQK 1876
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 4e-04
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 6/35 (17%)
Query: 6 EKEELVQRAKLAEQAERY-DDMAAAMKAVTETGVE 39
EK+ L KL + Y DD A A+ A+ T +E
Sbjct: 18 EKQAL---KKLQASLKLYADDSAPAL-AIKAT-ME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 6e-04
Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 36/212 (16%)
Query: 3 SSGEKEELVQRAKLAEQAER-YDDMAAAMKAVTETGVELSNEERNLLSVAYKNVVGARRS 61
S E + ++ R + + + + + + VE +L + YK ++ ++
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE------EVLRINYKFLMSPIKT 100
Query: 62 SWRVISSIEQKTEGSERKQ-----QMAREY---REKVEKELRDICYDVLKRSQ------V 107
R S + + +R + Q+ +Y R + +LR + L+ ++ V
Sbjct: 101 EQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGV 158
Query: 108 KGCPLKVLVSAVCDATQVLCSGSG----LSVGTLGQDIRSFIDTRRAGPGELSAHCVGPN 163
G + VC + +V C L++ + ++ + L + + PN
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQK----LL-YQIDPN 212
Query: 164 KVAYCELYDHSDGTFTLNVKPQESGRHVLTVK 195
+ DHS Q R +L K
Sbjct: 213 ---WTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 33.6 bits (76), Expect = 0.023
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 63 WRV--ISSIEQKTEGSERKQQMAREYREKVEKELRD 96
WR +++ S+ +Q E+REK +K+L +
Sbjct: 90 WREEQRKRLQELDAASKVMEQ---EWREKAKKDLEE 122
Score = 30.1 bits (67), Expect = 0.35
Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 66 ISSIEQKTEGSERKQQMAREYREKVEKELRD 96
I+ ++ T+ E R++RE+ K L++
Sbjct: 74 IAQADRLTQEPES----IRKWREEQRKRLQE 100
>1kpt_A KP4 toxin; killer toxin, virally encoded, single subunit,
alpha/beta family, LEFT-handed crossover, fungal TOXI;
1.75A {Ustilago maydis} SCOP: d.70.1.1
Length = 105
Score = 26.5 bits (58), Expect = 2.8
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 127 CSGS---GLSVGTLGQDIRSFI---DTRRAGPGELSAHCVGPNKVAYCELYDHSDGTFT 179
C GS GLS G L IR + PGE A V + ++ +
Sbjct: 5 CRGSSQCGLSGGNLMVRIRDQACGNQGQTWCPGERRA-KVCGTGNSISAYVQSTNNCIS 62
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein,
rossmann- like fold, APO-form, extended loop region;
HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A*
3g6k_A*
Length = 308
Score = 27.2 bits (59), Expect = 3.6
Identities = 13/117 (11%), Positives = 28/117 (23%), Gaps = 31/117 (26%)
Query: 74 EGSERKQQMAREYREKVEKELRDICYDVLKRSQVKGCPLKVLVSAVCDATQVLCSGSGLS 133
++ + Y + + + K + A QV +
Sbjct: 120 TLENFIEETSLRY-----------SLSLYESDRDKCETMA---EAFETFLQVFPETKAIV 165
Query: 134 VGT-----LGQDIRSFIDTRRAGPGELSAHCVG------------PNKVAYCELYDH 173
+G G+ ++ T P + + CELY +
Sbjct: 166 IGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRY 222
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural
genomics, PSI, protein initiative, northeast structural
genomics consortium; 2.30A {Bacillus subtilis} SCOP:
d.58.4.5
Length = 122
Score = 26.4 bits (58), Expect = 3.9
Identities = 17/107 (15%), Positives = 35/107 (32%), Gaps = 25/107 (23%)
Query: 13 RAKLAEQAERYDDMAAAMKAVTET-----GVE-LSNEERNLLSVAYKNVVGARRSSWRVI 66
+ +E Y + A M ++ GVE + + ++V+Y W +
Sbjct: 19 SSVKSENDTGYGETAERMVSLAADQPGFLGVESVREADGRGITVSY----------WDSM 68
Query: 67 SSIEQKTEGSE--RKQQMARE-----YREKVEKELRDICYDVLKRSQ 106
+I +E ++ R Y +V K R + +
Sbjct: 69 DAINHWRHHTEHQAAKEKGRSVWYESYAVRVAKVDRQ--RLFQENTN 113
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.365
Gapped
Lambda K H
0.267 0.0489 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,904,178
Number of extensions: 162422
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 66
Length of query: 201
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 112
Effective length of database: 4,216,824
Effective search space: 472284288
Effective search space used: 472284288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.5 bits)