BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5372
(586 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 336 bits (862), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/458 (39%), Positives = 255/458 (55%), Gaps = 22/458 (4%)
Query: 121 TDEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQELXXXXXXXXXXXXXXXMEYTHEDIKDS 180
TD +P QWY LS +++ DLN+ + + +E H D+ +
Sbjct: 7 TDPKFPQQWY-----LSGVTQR-DLNVKEAWAQ-GFTGHGIVVSILDDGIEKNHPDLAGN 59
Query: 181 FAPELSYNFNAEKWDITPRYEDPR-NKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKL 239
+ P S++ N + D PRY N+HGTRCAGE+ NN CGVGV Y AR+GGV++
Sbjct: 60 YDPGASFDVNDQDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGVGVAYNARIGGVRM 119
Query: 240 LDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKG 299
LDGE TD +E+++L + + IYS SWGP DDGK++DGP +L++ A RG+ +GR G G
Sbjct: 120 LDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLG 179
Query: 300 VLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGIS 359
+FV+A+GNG D+C DGY NSIYT++I+SA + G P+YSE C+ +AT YS G
Sbjct: 180 SIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQ 239
Query: 360 DPVKIITTDVHNTCTCEHSGTSXXXXXXXXXXXXXXEANPNMTWRDCQHILAWTSEREPL 419
+ +I+TTD+ CT H+GTS EAN N+TWRD QH++ TS+ L
Sbjct: 240 NEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHL 299
Query: 420 SHVSGWERNARDLWFHSAYGFGLINTFKLVSLAKNWVNVPAQAKCEIAL-----DVGSST 474
+ W N +YG+GL++ +V+LA+NW V Q KC + + D+G
Sbjct: 300 -NADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRKCIVEILVEPKDIGKRL 358
Query: 475 GFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIELTAPSGVKSVLME 534
A +T C + + LEHV A L + + RRGD+ I L +P G +S L+
Sbjct: 359 EVRKA--------VTACLGEPNHITRLEHVQARLTLSYNRRGDLAIHLISPMGTRSTLLA 410
Query: 535 PRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTK 572
RP D GF DW+ +T W EDP GEW EI +T
Sbjct: 411 ARPHDYSADGFNDWAFMTTHSWDEDPAGEWVLEIENTS 448
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 292 bits (748), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 164/418 (39%), Positives = 235/418 (56%), Gaps = 20/418 (4%)
Query: 170 MEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVC 229
++Y +ED+KD+F E S++FN PR D + HGTRCAGE+ K N+ CGVGV
Sbjct: 65 LDYENEDLKDNFXAEGSWDFNDNTNLPKPRLSD--DYHGTRCAGEIAAKKGNNFCGVGVG 122
Query: 230 YGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDR 289
Y A++ G+++L G+ T E+ +L +GLD DIYS SWGP DDG+ + GP L K A+ +
Sbjct: 123 YNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVK 182
Query: 290 GIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGL 349
G+ EGR KG ++VFA+GNG GDNC DGY NSIY+I I + P YSE C+ +
Sbjct: 183 GVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAV 242
Query: 350 IATAYSGGISDPVKIITTDVHNTCTCEHSGTSXXXXXXXXXXXXXXEANPNMTWRDCQHI 409
+A YS G + I ++D++ C+ H GTS EANPN+TWRD Q++
Sbjct: 243 MAVTYSSGSGE--YIHSSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 300
Query: 410 LAWTSEREPLSHVSGWERNARDLWFHSA--------YGFGLINTFKLVSLAKNWVNVPAQ 461
LS V G E+NA W SA YGFG I+ KL+ ++K W NV AQ
Sbjct: 301 -------SILSAV-GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQ 352
Query: 462 AKCEIALDVGSSTGFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIE 521
+ S + S + + I+ S K +EHV T++I+ RG ++
Sbjct: 353 TWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVD 412
Query: 522 LTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTKYDGLLDF 579
L +P+G+ S L RP+D GF DW+ +++ HWGE+ VG+WK ++ T+ +DF
Sbjct: 413 LISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKVKTTENGHRIDF 470
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 163/418 (38%), Positives = 235/418 (56%), Gaps = 20/418 (4%)
Query: 170 MEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVC 229
++Y +ED+KD+F E S++FN PR D + HGTRCAGE+ K N+ CGVGV
Sbjct: 58 LDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSD--DYHGTRCAGEIAAKKGNNFCGVGVG 115
Query: 230 YGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDR 289
Y A++ G+++L G+ T E+ +L +GLD DIYS SWGP DDG+ + GP L K A+ +
Sbjct: 116 YNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVK 175
Query: 290 GIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGL 349
G+ EGR KG ++VFA+GNG GDNC DGY NSIY+I I + P YSE C+ +
Sbjct: 176 GVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAV 235
Query: 350 IATAYSGGISDPVKIITTDVHNTCTCEHSGTSXXXXXXXXXXXXXXEANPNMTWRDCQHI 409
+A YS G + + ++D++ C+ H GTS EANPN+TWRD Q++
Sbjct: 236 MAVTYSSGSGEYIH--SSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 293
Query: 410 LAWTSEREPLSHVSGWERNARDLWFHSA--------YGFGLINTFKLVSLAKNWVNVPAQ 461
LS V G E+NA W SA YGFG I+ KL+ ++K W NV AQ
Sbjct: 294 -------SILSAV-GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQ 345
Query: 462 AKCEIALDVGSSTGFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIE 521
+ S + S + + I+ S K +EHV T++I+ RG ++
Sbjct: 346 TWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVD 405
Query: 522 LTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTKYDGLLDF 579
L +P+G+ S L RP+D GF DW+ +++ HWGE+ VG+WK ++ T+ +DF
Sbjct: 406 LISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKVKTTENGHRIDF 463
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 291 bits (744), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 163/418 (38%), Positives = 235/418 (56%), Gaps = 20/418 (4%)
Query: 170 MEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVC 229
++Y +ED+KD+F E S++FN PR D + HGTRCAGE+ K N+ CGVGV
Sbjct: 56 LDYENEDLKDNFCAEGSWDFNDNTNLPKPRLSD--DYHGTRCAGEIAAKKGNNFCGVGVG 113
Query: 230 YGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDR 289
Y A++ G+++L G+ T E+ +L +GLD DIYS SWGP DDG+ + GP L K A+ +
Sbjct: 114 YNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVK 173
Query: 290 GIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGL 349
G+ EGR KG ++VFA+GNG GDNC DGY NSIY+I I + P YSE C+ +
Sbjct: 174 GVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAV 233
Query: 350 IATAYSGGISDPVKIITTDVHNTCTCEHSGTSXXXXXXXXXXXXXXEANPNMTWRDCQHI 409
+A YS G + + ++D++ C+ H GTS EANPN+TWRD Q++
Sbjct: 234 MAVTYSSGSGEYIH--SSDINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYL 291
Query: 410 LAWTSEREPLSHVSGWERNARDLWFHSA--------YGFGLINTFKLVSLAKNWVNVPAQ 461
LS V G E+NA W SA YGFG I+ KL+ ++K W NV AQ
Sbjct: 292 -------SILSAV-GLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQ 343
Query: 462 AKCEIALDVGSSTGFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIE 521
+ S + S + + I+ S K +EHV T++I+ RG ++
Sbjct: 344 TWFYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVD 403
Query: 522 LTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTKYDGLLDF 579
L +P+G+ S L RP+D GF DW+ +++ HWGE+ VG+WK ++ T+ +DF
Sbjct: 404 LISPAGIISNLGVVRPRDVSSEGFKDWTFMSVAHWGENGVGDWKIKVKTTENGHRIDF 461
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 113/483 (23%), Positives = 188/483 (38%), Gaps = 131/483 (27%)
Query: 207 HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKVD----I 262
HGT +G ++ +N+ G+ A++ G LLD + L + G +
Sbjct: 115 HGTSVSG-IIAAVDNAIGTKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRV 173
Query: 263 YSGSWG----PPDDGKSMDGPGKLSKAAIDRGI-REGRQGKGVLFVFAAGNGKYNGDNCA 317
++ S+G P S+D ++ +DR ++ + +G ++ AAGNG +N A
Sbjct: 174 FNQSYGMSVVDPRSANSLD------QSQLDRLFEQQTLKAQGAAYIKAAGNG-FN--KIA 224
Query: 318 ADGYI---------------------NSIYTIAIASAREDGQSPFYSEECTGLIATAYSG 356
A GY+ ++ + + +++ DG YS + + +A G
Sbjct: 225 AGGYVLNRTGNGPKLPFENSNLDPSNSNFWNLVVSALNADGVRSSYSSVGSNIFLSATGG 284
Query: 357 --GISDPVKIIT-----------TDVHNT----------CTCEHSG----TSXXXXXXXX 389
G P + T TD +T +C+++G TS
Sbjct: 285 EYGTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSG 344
Query: 390 XXXXXXEANPNMTWRDCQHILAWTSEREPLSH-------------------VSGWERNAR 430
A P+++ RD + +LA ++ R H + GWERNA
Sbjct: 345 AMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAA 404
Query: 431 DLWFHSAYGFGLINTFKLVSLAKN-----------WVNVPAQAKCEIALDVGSSTGFSYA 479
+WF YGFGLI+ K + LA N W + DVG+S
Sbjct: 405 GMWFSPTYGFGLIDVNKALELAANHQPLPPLVQLPWQKINVTGSAAAIADVGNS------ 458
Query: 480 SSWQRSFNITPCSDTVDEVKYL--EHVHATLNIEHPRRGDVRIELTAPSGVKSVLMEP-- 535
P S T L E V ++++H R D+ IEL +P+G +S+L+ P
Sbjct: 459 ----------PTSSTTRIATPLTVEAVQVMVSLDHQRLPDLLIELVSPAGTRSILLSPFN 508
Query: 536 ----RPQDDCKTGFV------DWSILTLKHWGEDPVGEWKFEIFD----TKYDGLLDFIT 581
+ D + GFV D +L+ K +GE G W+ E+ D T+ LL+ T
Sbjct: 509 SLVGQSLDQQQLGFVRTKGLRDMRMLSNKFYGESAQGTWRLEVTDVANGTRQVSLLNRET 568
Query: 582 RNK 584
R +
Sbjct: 569 RER 571
>pdb|1KN6|A Chain A, Solution Structure Of The Mouse Prohormone Convertase 1
Pro- Domain
Length = 90
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 11 FLNQWVVHISGDPDIANQVAQDLGFHYNGIINGLDNHYLFSKKQHNHKTPEETTFETVGL 70
F+N+W I G + A+ +A++LG+ G I L+NHYLF K H ++ T L
Sbjct: 11 FVNEWAAEIPGGQEAASAIAEELGYDLLGQIGSLENHYLFKHKSHPRRSRRSALHITKRL 70
Query: 71 LNDARVIWTQQQFAKHLRKR 90
+D RV W +QQ+ K KR
Sbjct: 71 SDDDRVTWAEQQYEKERSKR 90
>pdb|3T13|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g At Cryogenic Temperature
pdb|3T13|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g At Cryogenic Temperature
pdb|3SR1|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A69g Bound To Ca2+ And
Thymidine-5',3'-Diphosphate At Cryogenic Temperature
Length = 143
Score = 32.7 bits (73), Expect = 0.51, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M GK + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENGKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3SK8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs M98g Apo Protein At Cryogenic Temperature
pdb|3S9W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs M98g Bound To Ca2+ And
Thymidine-5',3'-Diphosphate At Cryogenic Temperature
Length = 143
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAGNG 309
R + G+G+ +++A G G
Sbjct: 75 RTDKYGRGLAYIYADGKG 92
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 26/133 (19%)
Query: 192 EKWDITPRYEDPRNK------HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL---DG 242
+ WD Y DPR + HG+ AG + NN GV YGA+V V++L G
Sbjct: 85 DNWDCG-GYPDPRREKRFSTWHGSHVAGTIAAVTNNGVGVAGVAYGAKVIPVRVLGKCGG 143
Query: 243 ETTDLIESKALQFGLDKVDIYSGSWGPPDD-------GKSMDGPGKLSKAAIDRGIREGR 295
+D+ + G +D G PD+ S+ G G S+++ + I +
Sbjct: 144 YDSDITDGMYWSAG-GHID------GVPDNQNPAQVINMSLGGDGDCSQSS--QRIIDKT 194
Query: 296 QGKGVLFVFAAGN 308
G L V AAGN
Sbjct: 195 TNLGALIVIAAGN 207
>pdb|3NK9|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74a At Cryogenic Temperature
Length = 143
Score = 32.3 bits (72), Expect = 0.74, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K +A D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEAEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 192 EKWDITPRYEDPRNK------HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL 240
+ WD Y DPR + HG+ AG + NN GV YGA+V V++L
Sbjct: 85 DNWDCG-GYPDPRREKKFSTWHGSHVAGTIAAVTNNGVGVAGVAYGAKVIPVRVL 138
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 200 YEDPRNK------HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL---DGETTDLIES 250
Y DPR + HG+ AG + NN GV YGA+V V+ L G +D+ +
Sbjct: 91 YPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRSGGYDSDISDG 150
Query: 251 KALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAA---IDRGIREGRQGKGVLFVFAAG 307
G I S+ G+ S A IDR R G L V AAG
Sbjct: 151 LYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATR-----LGALVVVAAG 205
Query: 308 NGKYNGDN 315
N N N
Sbjct: 206 NENQNASN 213
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 200 YEDPRNK------HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL---DGETTDLIES 250
Y DPR + HG+ AG + NN GV YGA+V V+ L G +D+ +
Sbjct: 91 YPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRCGGYDSDISDG 150
Query: 251 KALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAA---IDRGIREGRQGKGVLFVFAAG 307
G I S+ G+ S A IDR R G L V AAG
Sbjct: 151 LYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATR-----LGALVVVAAG 205
Query: 308 NGKYNGDN 315
N N N
Sbjct: 206 NENQNASN 213
>pdb|4HTH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+viagla At Cryogenic Temperature
Length = 143
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VDI ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMVFRLLLVDIPEFNEKYGPEAAAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3HZX|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV 9 Determined At 100 K
Length = 143
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMKENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3ERO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72e At Cryogenic Temperature
Length = 143
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKEEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4EQP|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs I72d At Cryogenic Temperature
Length = 143
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|2RBM|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72k At Cryogenic Temperature
Length = 143
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKKEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 194 WDITPRYEDPRNK--HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD 241
WD P+N HGT CAG NNS G A + V++LD
Sbjct: 56 WDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLD 105
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 194 WDITPRYEDPRNK--HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD 241
WD P+N HGT CAG NNS G A + V++LD
Sbjct: 56 WDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIAGTAPKASILAVRVLD 105
>pdb|3MHB|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L38a At Cryogenic Temperature
Length = 143
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLAVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3OWF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V66r At Cryogenic Temperature
Length = 143
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMRENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3NQT|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V66a At Cryogenic Temperature
Length = 143
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMAENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4HMI|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V99k At Cryogenic Temperature
Length = 143
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAGNGK 310
R + G+G+ +++A G K
Sbjct: 75 RTDKYGRGLAYIYADGKMK 93
>pdb|3D8G|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I72r At Cryogenic Temperature
Length = 143
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKREVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4DU9|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV74A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K +A D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEAEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|4F53|A Chain A, Crystal Structure Of A Susd Homolog (Bacova_04803) From
Bacteroides Ovatus Atcc 8483 At 2.25 A Resolution
pdb|4F53|B Chain B, Crystal Structure Of A Susd Homolog (Bacova_04803) From
Bacteroides Ovatus Atcc 8483 At 2.25 A Resolution
Length = 520
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 1 THVGVERAEHFLNQWVVHISGDPDIANQVAQDLGFHYNGIINGLDNHYLFSKKQHNHKTP 60
+ V RAE L W + G + L F NGI +G++N+ + K +K P
Sbjct: 338 SEVAFLRAEGALRNW--NXGGTAKDFYEEGIRLSFEENGITSGVENYLASTGKVEAYKDP 395
Query: 61 ----EETTFETVGLLN-DARVIWTQQQFAKHLRK 89
T++ G +N + V W+ F K L +
Sbjct: 396 LKGQSAQTYDYSGAINTNVTVAWSGGDFEKSLEQ 429
>pdb|4F8M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23iI92V AT CRYOGENIC TEMPERATURE
Length = 143
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTIKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +V+A G
Sbjct: 75 RTDKYGRGLAYVYADG 90
>pdb|4EQN|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs V23eI72K AT CRYOGENIC TEMPERATURE
Length = 143
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTEKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKKEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3P75|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104d At Cryogenic Temperature
Length = 129
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 9 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 68
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 69 RTDKYGRGLAYIYADG 84
>pdb|4IZ8|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs H8e At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4IAL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs H121e At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3BDC|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3MXP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs T62a At Cryogenic Temperature
pdb|3R3O|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs T62a At Cryogenic Temperature And With High
Redundancy
Length = 143
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFAKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3HEJ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|D Chain D, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
pdb|3HEJ|C Chain C, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+p Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFRKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3D4W|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A109r At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4J1M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs R105e At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4IUN|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs R126e At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3PMF|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23a At Cryogenic Temperature
Length = 143
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTAKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 70 LLNDARVIWTQQQFAKHLRKRAEIQELRRQLRAMSQIYRKETEVSKYEGMFTDEWWPMQW 129
L+ND ++ + + ++ E+ + L + I KET+ E + T+ W W
Sbjct: 7 LINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETD----ETLTTNVWMDHAW 62
Query: 130 YEQDYRLS-NSSKKLDLNIVPVYQEL 154
Y D+RL+ N+S+ D++I+ + EL
Sbjct: 63 Y--DHRLTWNASEYSDISILRLRPEL 86
>pdb|3NXW|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L125a At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3MZ5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103a At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 70 LLNDARVIWTQQQFAKHLRKRAEIQELRRQLRAMSQIYRKETEVSKYEGMFTDEWWPMQW 129
L+ND ++ + + ++ E+ + L + I KET+ E + T+ W W
Sbjct: 28 LINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETD----ETLTTNVWMDHAW 83
Query: 130 YEQDYRLS-NSSKKLDLNIVPVYQEL 154
Y D+RL+ N+S+ D++I+ + EL
Sbjct: 84 Y--DHRLTWNASEYSDISILRLRPEL 107
>pdb|4EQO|A Chain A, Crystal Structure Of Staphylococcal Nulease Variant
Delta+phs V99d At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3TP7|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+phs V99e At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3H6M|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104e At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3C1F|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V104k At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3E5S|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103k At Cryogenic Temperature
pdb|3E5S|B Chain B, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L103k At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3C1E|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L125k At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3TME|A Chain A, Crystal Structure Of Staphylcoccal Nulease Variant
Delta+nviagla V23e At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG T L+ + + + F L VDI ++ +GP K M K + D+G
Sbjct: 15 IKAIDGNTEKLMYKGQPMVFRLLLVDIPEFNEKYGPEAAAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3SK5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V39d At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI---ESKALQFGLDKVDIYSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + LD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLDDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3DHQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs A90r At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLRYIYADG 90
>pdb|3RUZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V74k At Cryogenic Temperature
Length = 143
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEKEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4DF7|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23lV99I AT CRYOGENIC TEMPERATURE
Length = 143
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTLKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3QOJ|A Chain A, Cryogenic Structure Of Staphylococcal Nuclease Variant
D+phsV23K
Length = 143
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTKKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3QOL|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
D+phsV23E AT PH 6 Determined At 100 K
Length = 143
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTEKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3LX0|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs D21n At Cryogenic Temperature
Length = 143
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGNTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3V2T|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV66A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMAENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|3EVQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L25e At Cryogenic Temperature
Length = 143
Score = 29.6 bits (65), Expect = 4.6, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETT-DLIESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T ++ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKEMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|3MEH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92a At Cryogenic Temperature
Length = 143
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|3SK4|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs D21nV23E AT CRYOGENIC TEMPERATURE
Length = 143
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGNTEKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|4DGZ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aL125A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|3SXH|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92al103a At Cryogenic Temperature
Length = 143
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|3VA5|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92aV23A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTAKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 48/126 (38%), Gaps = 17/126 (13%)
Query: 202 DPRNK------HGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL---DGETTDLIESKA 252
DPR + HG+ AG + NN GV YGA+V V+ L G +D+ +
Sbjct: 93 DPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVAYGAKVVPVRALGRCGGYDSDISDGLY 152
Query: 253 LQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAA---IDRGIREGRQGKGVLFVFAAGNG 309
G I S+ G+ S A IDR R G L V AAGN
Sbjct: 153 WAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQTMIDRATR-----LGALVVVAAGNE 207
Query: 310 KYNGDN 315
N N
Sbjct: 208 NQNASN 213
>pdb|2OXP|A Chain A, Crystal Structure Of Staphylococcal Nuclease Mutant
V66dP117GH124LS128A
Length = 149
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDIYSGS--------WGPPDDG--KSMDGPGKLSKA 285
+K +DG+T L+ + + + F L VD +GP K MD K +
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMDENAKKIEV 74
Query: 286 AIDRGIREGRQGKGVLFVFAAG 307
D+G R + G+G+ +++A G
Sbjct: 75 EFDKGQRTDKYGRGLAYIYADG 96
>pdb|3P1H|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs V23kI92A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTKKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYAYADG 90
>pdb|2OEO|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92d
Length = 138
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K+M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKAMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYDYADG 90
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 11/74 (14%)
Query: 170 MEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPR--NKHGTRCAGELVMKPNNSKCGVG 227
++YTH D+ + +D DP N HGT AG + NN+ G
Sbjct: 42 VDYTHPDLDGKVI---------KGYDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIAG 92
Query: 228 VCYGARVGGVKLLD 241
+ R+ V+ LD
Sbjct: 93 MAPNTRILAVRALD 106
>pdb|4EOA|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs I92nV66A AT CRYOGENIC TEMPERATURE
Length = 143
Score = 28.9 bits (63), Expect = 7.9, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMAENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYNYADG 90
>pdb|2OF1|A Chain A, Cryogenic Crystal Structure Of The Staphylococcal Nuclease
Variant Truncated Delta+phs I92w
Length = 138
Score = 28.9 bits (63), Expect = 8.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K+M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKAMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYWYADG 90
>pdb|3OSO|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant
Delta+phs L25a At Cryogenic Temperature
Length = 143
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTD-LIESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T + + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKAMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|1TT2|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92k
Length = 138
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYKYADG 90
>pdb|3ERQ|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant L25k
At Cryogenic Temperature
Length = 143
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTD-LIESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T + + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKKMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ +++A G
Sbjct: 75 RTDKYGRGLAYIYADG 90
>pdb|1TQO|A Chain A, Cryogenic Crystal Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92e
pdb|1TR5|A Chain A, Room Temperature Structure Of Staphylococcal Nuclease
Variant Truncated Delta+phs I92e
Length = 138
Score = 28.9 bits (63), Expect = 9.1, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDI--YSGSWGPPDDG--KSMDGPGKLSKAAIDRGI 291
+K +DG+T L+ + + + F L VD ++ +GP K M K + D+G
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKIEVEFDKGQ 74
Query: 292 REGRQGKGVLFVFAAG 307
R + G+G+ + +A G
Sbjct: 75 RTDKYGRGLAYEYADG 90
>pdb|2RKS|A Chain A, Crystal Structure Of Staphylococcal Nuclease Variant Phs
L38k At Cryogenic Temperature
Length = 149
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 11/82 (13%)
Query: 237 VKLLDGETTDLI-ESKALQFGLDKVDIYSGS--------WGPPDDG--KSMDGPGKLSKA 285
+K +DG+T L+ + + + F L KVD +GP K M K +
Sbjct: 15 IKAIDGDTVKLMYKGQPMTFRLLKVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEV 74
Query: 286 AIDRGIREGRQGKGVLFVFAAG 307
D+G R + G+G+ +++A G
Sbjct: 75 EFDKGQRTDKYGRGLAYIYADG 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,073,460
Number of Sequences: 62578
Number of extensions: 833317
Number of successful extensions: 1784
Number of sequences better than 100.0: 99
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 99
length of query: 586
length of database: 14,973,337
effective HSP length: 104
effective length of query: 482
effective length of database: 8,465,225
effective search space: 4080238450
effective search space used: 4080238450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)