Query psy5372
Match_columns 586
No_of_seqs 451 out of 3189
Neff 8.4
Searched_HMMs 46136
Date Sat Aug 17 00:55:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 1.1E-91 2.5E-96 681.2 28.3 552 6-578 25-588 (629)
2 cd04059 Peptidases_S8_Protein_ 100.0 5.1E-54 1.1E-58 440.5 26.5 294 120-415 1-297 (297)
3 PTZ00262 subtilisin-like prote 100.0 1.3E-52 2.8E-57 448.9 27.7 293 115-457 282-620 (639)
4 KOG3525|consensus 100.0 1.3E-47 2.9E-52 402.5 19.8 428 122-573 1-429 (431)
5 cd07484 Peptidases_S8_Thermita 100.0 5E-46 1.1E-50 373.9 27.5 254 120-417 2-259 (260)
6 cd07489 Peptidases_S8_5 Peptid 100.0 5.1E-46 1.1E-50 383.5 28.0 288 147-456 2-304 (312)
7 cd05562 Peptidases_S53_like Pe 100.0 3.1E-45 6.7E-50 368.4 25.5 250 155-450 1-274 (275)
8 cd07479 Peptidases_S8_SKI-1_li 100.0 1.3E-44 2.9E-49 361.1 23.6 240 151-418 1-254 (255)
9 cd07475 Peptidases_S8_C5a_Pept 100.0 3.2E-44 6.9E-49 375.8 26.3 283 149-450 1-346 (346)
10 cd05561 Peptidases_S8_4 Peptid 100.0 3.4E-44 7.4E-49 354.9 23.9 232 161-441 1-239 (239)
11 cd07497 Peptidases_S8_14 Pepti 100.0 3E-44 6.5E-49 366.6 24.0 248 158-414 1-311 (311)
12 cd07483 Peptidases_S8_Subtilis 100.0 5.9E-44 1.3E-48 363.5 25.2 239 159-415 1-291 (291)
13 cd04843 Peptidases_S8_11 Pepti 100.0 8.3E-44 1.8E-48 358.4 24.3 246 145-415 2-277 (277)
14 cd04077 Peptidases_S8_PCSK9_Pr 100.0 5.7E-43 1.2E-47 350.6 23.6 245 129-416 1-255 (255)
15 cd07476 Peptidases_S8_thiazoli 100.0 7.2E-43 1.6E-47 350.3 23.8 246 150-421 2-256 (267)
16 cd07474 Peptidases_S8_subtilis 100.0 1.1E-42 2.3E-47 356.3 24.4 270 158-448 1-295 (295)
17 cd07481 Peptidases_S8_Bacillop 100.0 1.5E-42 3.2E-47 349.2 24.0 241 158-415 1-264 (264)
18 cd07493 Peptidases_S8_9 Peptid 100.0 3.1E-42 6.8E-47 346.3 23.4 242 160-415 1-261 (261)
19 cd07485 Peptidases_S8_Fervidol 100.0 4.4E-42 9.5E-47 347.5 23.9 247 149-413 1-273 (273)
20 cd07498 Peptidases_S8_15 Pepti 100.0 5.2E-42 1.1E-46 341.1 24.0 230 161-413 1-242 (242)
21 cd07496 Peptidases_S8_13 Pepti 100.0 8.6E-42 1.9E-46 347.5 24.1 232 160-413 1-285 (285)
22 cd07487 Peptidases_S8_1 Peptid 100.0 2.1E-41 4.6E-46 341.1 24.9 243 158-415 1-264 (264)
23 KOG1153|consensus 100.0 8.5E-42 1.8E-46 341.5 15.4 342 8-416 76-462 (501)
24 cd07490 Peptidases_S8_6 Peptid 100.0 2.8E-40 6E-45 331.1 23.8 237 160-415 1-254 (254)
25 cd07473 Peptidases_S8_Subtilis 100.0 5.8E-40 1.2E-44 329.7 25.6 232 159-415 2-259 (259)
26 cd07494 Peptidases_S8_10 Pepti 100.0 5.4E-40 1.2E-44 334.4 25.4 246 143-419 6-287 (298)
27 cd07477 Peptidases_S8_Subtilis 100.0 1.1E-39 2.3E-44 321.7 24.6 225 160-413 1-229 (229)
28 cd04852 Peptidases_S8_3 Peptid 100.0 7E-40 1.5E-44 336.9 22.8 233 150-415 22-307 (307)
29 cd04847 Peptidases_S8_Subtilis 100.0 8E-40 1.7E-44 334.1 20.8 241 162-415 2-291 (291)
30 cd04842 Peptidases_S8_Kp43_pro 100.0 7.8E-40 1.7E-44 334.8 19.9 250 154-415 2-293 (293)
31 cd07491 Peptidases_S8_7 Peptid 100.0 2E-39 4.4E-44 321.3 21.7 215 158-397 2-229 (247)
32 cd07480 Peptidases_S8_12 Pepti 100.0 3.2E-39 6.9E-44 330.4 23.6 242 154-412 3-269 (297)
33 cd07478 Peptidases_S8_CspA-lik 100.0 3.6E-39 7.9E-44 345.4 24.0 267 156-441 1-455 (455)
34 cd04857 Peptidases_S8_Tripepti 100.0 1.1E-38 2.4E-43 331.8 25.8 204 203-417 183-412 (412)
35 cd04848 Peptidases_S8_Autotran 100.0 1E-38 2.2E-43 321.7 24.8 246 157-415 1-267 (267)
36 cd07482 Peptidases_S8_Lantibio 100.0 8.5E-39 1.8E-43 327.3 23.8 239 160-413 1-294 (294)
37 PF00082 Peptidase_S8: Subtila 100.0 1.2E-39 2.6E-44 331.5 15.3 271 162-450 1-282 (282)
38 cd07492 Peptidases_S8_8 Peptid 100.0 1.4E-37 3E-42 305.1 23.8 218 160-415 1-222 (222)
39 KOG4266|consensus 100.0 3.4E-34 7.4E-39 294.4 18.4 405 5-458 42-473 (1033)
40 cd00306 Peptidases_S8_S53 Pept 100.0 6.2E-31 1.3E-35 259.7 24.8 234 161-413 1-241 (241)
41 cd07488 Peptidases_S8_2 Peptid 100.0 5.8E-31 1.3E-35 260.1 15.8 192 203-409 35-236 (247)
42 KOG1114|consensus 99.9 9.2E-27 2E-31 249.7 15.8 230 203-455 308-562 (1304)
43 COG1404 AprE Subtilisin-like s 99.9 3E-23 6.6E-28 227.0 21.4 251 144-416 126-398 (508)
44 cd04056 Peptidases_S53 Peptida 99.8 2.7E-17 5.8E-22 172.5 22.0 216 225-448 83-360 (361)
45 PF01483 P_proprotein: Proprot 99.7 7.2E-18 1.6E-22 139.6 8.0 82 501-582 1-85 (87)
46 COG4935 Regulatory P domain of 99.6 1.6E-14 3.4E-19 129.6 12.8 107 470-583 11-123 (177)
47 COG4934 Predicted protease [Po 98.9 3.8E-09 8.3E-14 120.2 11.0 172 146-332 216-395 (1174)
48 PF05922 Inhibitor_I9: Peptida 97.1 0.00019 4.1E-09 58.2 0.9 40 47-87 42-81 (82)
49 PF09315 DUF1973: Domain of un 85.8 5.8 0.00013 37.3 9.2 79 474-571 9-87 (179)
50 PF01835 A2M_N: MG2 domain; I 78.7 13 0.00029 30.8 8.1 57 514-575 34-90 (99)
51 KOG1114|consensus 78.6 1.4 3.1E-05 50.3 2.6 25 155-179 77-101 (1304)
52 PF12975 DUF3859: Domain of un 70.0 10 0.00022 33.4 5.3 47 525-572 69-115 (125)
53 cd07478 Peptidases_S8_CspA-lik 61.9 58 0.0013 35.5 10.4 69 509-578 227-313 (455)
54 PF11141 DUF2914: Protein of u 48.8 28 0.00061 26.8 3.8 25 548-572 30-54 (66)
55 TIGR00868 hCaCC calcium-activa 48.1 1.9E+02 0.0042 34.1 12.0 85 474-578 495-579 (863)
56 PF13940 Ldr_toxin: Toxin Ldr, 46.9 17 0.00036 23.7 1.9 14 382-395 14-27 (35)
57 COG2166 sufE Cysteine desulfur 40.3 23 0.00051 31.7 2.5 35 373-408 70-104 (144)
58 PRK15019 CsdA-binding activato 39.4 29 0.00064 31.4 3.0 33 375-408 77-109 (147)
59 TIGR03391 FeS_syn_CsdE cystein 38.1 28 0.00061 31.1 2.7 34 375-409 72-105 (138)
60 PRK09296 cysteine desufuration 35.7 32 0.0007 30.8 2.7 33 375-408 67-99 (138)
61 smart00557 IG_FLMN Filamin-typ 35.7 2.2E+02 0.0047 23.2 7.6 49 514-572 30-78 (93)
62 PF02657 SufE: Fe-S metabolism 32.6 46 0.00099 29.2 3.1 33 376-409 59-91 (125)
63 PF14326 DUF4384: Domain of un 28.6 3E+02 0.0065 21.9 7.8 31 507-537 10-40 (83)
64 PRK10301 hypothetical protein; 27.6 3.2E+02 0.0069 23.9 7.5 54 517-576 60-113 (124)
65 PF04255 DUF433: Protein of un 27.3 57 0.0012 24.1 2.4 37 375-411 12-54 (56)
66 PF04151 PPC: Bacterial pre-pe 26.7 2.8E+02 0.0061 21.0 6.4 45 517-569 25-69 (70)
67 PF02845 CUE: CUE domain; Int 24.0 1.1E+02 0.0024 20.9 3.2 24 391-414 5-28 (42)
68 smart00546 CUE Domain that may 23.3 1.2E+02 0.0027 20.7 3.4 25 390-414 5-29 (43)
69 PF13955 Fst_toxin: Toxin Fst, 20.8 69 0.0015 18.7 1.3 17 381-397 3-19 (21)
No 1
>KOG3526|consensus
Probab=100.00 E-value=1.1e-91 Score=681.25 Aligned_cols=552 Identities=39% Similarity=0.689 Sum_probs=512.1
Q ss_pred cccceeeeeEEEEEcCC--cchHHHHHHHhCCeEeeecCCCCCeEEEEEcCCCCCCCCccccccccccCCCceeEEeecc
Q psy5372 6 ERAEHFLNQWVVHISGD--PDIANQVAQDLGFHYNGIINGLDNHYLFSKKQHNHKTPEETTFETVGLLNDARVIWTQQQF 83 (586)
Q Consensus 6 ~~~~~~~~~~iV~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~ve~~~ 83 (586)
+..+++++.|+|+|+.| .+.+.++|+++|+.+.+++...++.|+|.++.+.+...+.+....++|.++|.|.-++++.
T Consensus 25 ~~~~vftnhflv~l~~g~g~~~ah~va~~hgf~nrg~~~a~d~eyhf~h~~l~har~rrsl~h~~~l~~dp~v~~a~qq~ 104 (629)
T KOG3526|consen 25 EAVDVFTNHFLVHLKEGGGLEDAHRVAKRHGFINRGQVAASDNEYHFVHPALVHARTRRSLGHHAKLHNDPEVKMALQQE 104 (629)
T ss_pred cCcceeeeeEEEEEeccCChHHHHHHHHHhCccccccccccCceeeeeccccchhhhhcccchhhhhccChhHhhhhhcc
Confidence 45789999999999965 4778999999999999998888899999999888777777788889999999999999999
Q ss_pred hhhccccchhhHHHHHHhhhhhhhcchhhccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCchHHHHcCCCCCCCcEE
Q psy5372 84 AKHLRKRAEIQELRRQLRAMSQIYRKETEVSKYEGMFTDEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQELNINGAGVNI 163 (586)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~qw~l~~~~~~~~~~~~~i~~~~aw~~~~~~G~gv~V 163 (586)
-+.+.++.+.+.... ....+||+|.+||||.|++|.+|.++.|+|+.++|. +|++|++|++
T Consensus 105 gf~r~krgyrp~~~f------------------d~~~~dplf~~qwylkntgqaggk~rldlnv~~awa-~g~tgknvtt 165 (629)
T KOG3526|consen 105 GFDRKKRGYRPINEF------------------DINMNDPLFTKQWYLKNTGQAGGKPRLDLNVAEAWA-LGYTGKNVTT 165 (629)
T ss_pred ccchhhccCCchhhh------------------ccccCCcccceeeeeecccccCCcccccccHHHHHh-hcccCCCceE
Confidence 999988876544322 223689999999999999999999999999999999 9999999999
Q ss_pred EEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCC-CCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCC
Q psy5372 164 IIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDP-RNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDG 242 (586)
Q Consensus 164 aViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~ 242 (586)
+|+|+|||+-||||+.|+....+|+|..+++-|+|+|.+| .+.|||.|||.+++..+|++|.+|||++.++..+|++|.
T Consensus 166 aimddgvdymhpdlk~nynaeasydfssndpfpyprytddwfnshgtrcagev~aardngicgvgvaydskvagirmldq 245 (629)
T KOG3526|consen 166 AIMDDGVDYMHPDLKSNYNAEASYDFSSNDPFPYPRYTDDWFNSHGTRCAGEVVAARDNGICGVGVAYDSKVAGIRMLDQ 245 (629)
T ss_pred EeecCCchhcCcchhcccCceeecccccCCCCCCCcccchhhhccCccccceeeeeccCCceeeeeeeccccceeeecCC
Confidence 9999999999999999999999999999999999999863 689999999999999999999999999999999999997
Q ss_pred C-chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCC
Q psy5372 243 E-TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGY 321 (586)
Q Consensus 243 ~-~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~ 321 (586)
. .+++++|..+...++.++|++.|||+.+++.++++|.+...+|+.+.+.++|+++|.|+|+|+|..|.. ++|++++|
T Consensus 246 pymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~-ddcncdgy 324 (629)
T KOG3526|consen 246 PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED-DDCNCDGY 324 (629)
T ss_pred chhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc-cccCCccc
Confidence 6 899999999999989999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred CCCceEEEEeeecCCCCCCCCCCCCCcceeccccCC-CCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCC
Q psy5372 322 INSIYTIAIASAREDGQSPFYSEECTGLIATAYSGG-ISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPN 400 (586)
Q Consensus 322 ~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~-~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~ 400 (586)
+++.+.|++-+.-++|+.+-|...|++.+.+.|+.+ -.|...+.+++..+.|+...+|||.|||-+||+.||.+++||.
T Consensus 325 aasmwtisinsaindg~nahydescsstlastfsng~rnpetgvattdlyg~ct~~hsgtsaaapeaagvfalaleanp~ 404 (629)
T KOG3526|consen 325 AASMWTISINSAINDGENAHYDESCSSTLASTFSNGGRNPETGVATTDLYGRCTRSHSGTSAAAPEAAGVFALALEANPS 404 (629)
T ss_pred hhheEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCCCcceeeeccccceecccCCccccCccccceeeeeeccCCC
Confidence 999999999999999999999999999999999887 3577889999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCcCCCCCC---CCccccCCCcccCCcccccccCHHHHHHHHhccCCCCCcceeeeeeecCcceecC
Q psy5372 401 MTWRDCQHILAWTSEREPLSHV---SGWERNARDLWFHSAYGFGLINTFKLVSLAKNWVNVPAQAKCEIALDVGSSTGFS 477 (586)
Q Consensus 401 lt~~~v~~~L~~tA~~~~~~~~---~~w~~n~~g~~~~~~~G~G~vna~~Av~~a~~~~~~~~~~~~~~~~~~~~~~~i~ 477 (586)
|||++++.+-..|++.+..-+. -.|.-|+.|..|++.||||.+|+.+.|.+|+.|.++|+.+.|+... +..+..|+
T Consensus 405 ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~lak~wktvppryhc~ag~-i~~p~~ip 483 (629)
T KOG3526|consen 405 LTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPPRYHCTAGL-IDTPHEIP 483 (629)
T ss_pred cchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHHHHHHhccCCCceeecccc-cCCccccc
Confidence 9999999999999988765442 2477799999999999999999999999999999999999999877 88899999
Q ss_pred CCCceEEEEEecCCCCCCccceeeeeEEEEEEEeCCcccceEEEEEcCCCCEEEeecCCCCC-CCCCCcccceEeeeeec
Q psy5372 478 YASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIELTAPSGVKSVLMEPRPQD-DCKTGFVDWSILTLKHW 556 (586)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~e~v~v~~~~~~~~~g~l~i~l~sPsGT~s~l~~~~~~d-~~~~g~~~~~~~s~~f~ 556 (586)
..+.+-++++.+.|.|...++.++||||..+++..++||||.|.|+||.||++.|+++|+.| ++.+||.+|.||+.+-|
T Consensus 484 ~~g~l~lei~tdac~g~~~evrylehvqavis~natrrgdl~l~ltspmgtksmilsrrp~dddskdgftkwpfmtthtw 563 (629)
T KOG3526|consen 484 ADGNLILEINTDACAGSQFEVRYLEHVQAVISFNATRRGDLTLYLTSPMGTKSMILSRRPKDDDSKDGFTKWPFMTTHTW 563 (629)
T ss_pred CCCcEEEEEecccccCchhhHHHHHhhheeeEeccccccceeEEEecCCCceeeEeecCCCCcccccccccCceeeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999986 79999999999999999
Q ss_pred CCCCCceEEEEEEECCC---CCeee
Q psy5372 557 GEDPVGEWKFEIFDTKY---DGLLD 578 (586)
Q Consensus 557 GE~~~G~Wtl~v~d~~~---~g~l~ 578 (586)
||.++|+|+|+..-.+. .|.|+
T Consensus 564 ge~p~gtw~learf~gp~~~~g~lk 588 (629)
T KOG3526|consen 564 GENPTGTWRLEARFQGPGAHAGTLK 588 (629)
T ss_pred CcCCCceEEEEEeccCCcccccchh
Confidence 99999999999998753 55554
No 2
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=5.1e-54 Score=440.47 Aligned_cols=294 Identities=51% Similarity=0.932 Sum_probs=255.4
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCCCchHHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCC
Q psy5372 120 FTDEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPR 199 (586)
Q Consensus 120 ~~dp~~~~qw~l~~~~~~~~~~~~~i~~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~ 199 (586)
||||++.+||+|++.+++.+.++.+|++.++|+ .+++|+||+|+|||+||+..||+|.+++....+|++.....++.|.
T Consensus 1 ~~dp~~~~qw~l~~~~~~~~~~~~~~~~~~~w~-~g~~G~gv~VaViDtGv~~~h~~l~~~~~~~~~~~~~~~~~~~~~~ 79 (297)
T cd04059 1 PNDPLFPYQWYLKNTGQAGGTPGLDLNVTPAWE-QGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPR 79 (297)
T ss_pred CCCcccccccccccCCCCCCCCCCCcccHHHHh-CCCCCcceEEEEEeCCcccCCHhHhhcccccccccccCCCCCCCCc
Confidence 699999999999999999999999999999999 9999999999999999999999999988766788888877666654
Q ss_pred CCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCCchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCc
Q psy5372 200 YEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGP 279 (586)
Q Consensus 200 ~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~ 279 (586)
.. +..+|||||||+|++..++..+..||||+|+|+++++++....+...+..+.+..+.++|||||||..........+
T Consensus 80 ~~-~~~gHGT~vAgiiag~~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~ 158 (297)
T cd04059 80 YD-DDNSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRMLDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGP 158 (297)
T ss_pred cc-cccccCcceeeEEEeecCCCcccccccccceEeEEEecCCccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCC
Confidence 32 67899999999999998777789999999999999999876555555555555556789999999987655444566
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCC
Q psy5372 280 GKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGIS 359 (586)
Q Consensus 280 ~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~a 359 (586)
...+.+++++++.++++++|++||+||||++...+.+.+..++.++++|+|||++.++.++.||++|+.+++.+++.+..
T Consensus 159 ~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~g~~~~~s~~g~~~~~~a~g~~~~ 238 (297)
T cd04059 159 GPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSG 238 (297)
T ss_pred cHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCCCCCcCCCCCCCcEEEEecCCCCC
Confidence 66888999999998887789999999999999767788888889999999999999999999999999998877654422
Q ss_pred -CCCceEEecCC--CCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 360 -DPVKIITTDVH--NTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 360 -pg~~i~st~~~--~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
++..|++++.. ..++..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 239 ~~~~~i~~~~~~~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 239 NPEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCceEeCCCCCCCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 24568888766 477889999999999999999999999999999999999999985
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=1.3e-52 Score=448.89 Aligned_cols=293 Identities=22% Similarity=0.219 Sum_probs=233.0
Q ss_pred ccCCCCCCCCCCCCCcccccCCCCCCCCCCCCchHHHHc-CCCCCCCcEEEEEecCccCCCcccccCCCC----------
Q psy5372 115 KYEGMFTDEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQE-LNINGAGVNIIIIDDGMEYTHEDIKDSFAP---------- 183 (586)
Q Consensus 115 ~~~~~~~dp~~~~qw~l~~~~~~~~~~~~~i~~~~aw~~-~~~~G~gv~VaViDtGid~~Hpdl~~~~~~---------- 183 (586)
..+..+|||.+..||+| ..++++++|+. .+.+|+||+|||||||||++||||.+++..
T Consensus 282 ~~~~~~ND~~~~~qWgL-----------d~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~~el~Grdg 350 (639)
T PTZ00262 282 LGKYQFNDEGRNLQWGL-----------DLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKELHGRKG 350 (639)
T ss_pred ccccccCCCCcccCcCc-----------chhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccccccccCccc
Confidence 34567999999999999 45678888872 245799999999999999999999987621
Q ss_pred -----------CCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCC----CchhHH
Q psy5372 184 -----------ELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDG----ETTDLI 248 (586)
Q Consensus 184 -----------~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~----~~~~~~ 248 (586)
..+|+|++++.+|. |.++|||||||||||.++|+.|+.||||+|+|+++|+++. ..++++
T Consensus 351 iDdD~nG~vdd~~G~nfVd~~~~P~-----D~~GHGTHVAGIIAA~gnN~~Gi~GVAP~AkLi~vKVld~~G~G~~sdI~ 425 (639)
T PTZ00262 351 IDDDNNGNVDDEYGANFVNNDGGPM-----DDNYHGTHVSGIISAIGNNNIGIVGVDKRSKLIICKALDSHKLGRLGDMF 425 (639)
T ss_pred cccccCCcccccccccccCCCCCCC-----CCCCcchHHHHHHhccccCCCceeeeecccccceEEEecCCCCccHHHHH
Confidence 23567776655553 7899999999999999889999999999999999999974 478999
Q ss_pred HHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCC------CCCC----
Q psy5372 249 ESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGD------NCAA---- 318 (586)
Q Consensus 249 ~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~------~~~~---- 318 (586)
.|+.|+.. ++++|||||||.... ...+.+|+++|.. +|+++|+||||++.... .|..
T Consensus 426 ~AI~yA~~-~GA~VINmSlG~~~~-------s~~l~~AV~~A~~-----kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~ 492 (639)
T PTZ00262 426 KCFDYCIS-REAHMINGSFSFDEY-------SGIFNESVKYLEE-----KGILFVVSASNCSHTKESKPDIPKCDLDVNK 492 (639)
T ss_pred HHHHHHHH-CCCCEEEeccccCCc-------cHHHHHHHHHHHH-----CCCEEEEeCCCCCCCcccccccccccccccc
Confidence 99999998 899999999997532 2367788888877 79999999999986421 1111
Q ss_pred CCCC----CCceEEEEeeecCCCC----CCCCCCCC-CcceeccccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHH
Q psy5372 319 DGYI----NSIYTIAIASAREDGQ----SPFYSEEC-TGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAG 389 (586)
Q Consensus 319 ~~~~----~~~~vi~Vga~~~~~~----~a~~S~~G-~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG 389 (586)
..|+ ..++||+|||++.+.. .+.+|++| ..+++ .|||..|+++. +++.|..++|||||||||||
T Consensus 493 ~YPaa~s~~~~nVIaVGAv~~d~~~~~s~s~~Snyg~~~VDI------aAPG~dI~St~-p~g~Y~~~SGTSmAAP~VAG 565 (639)
T PTZ00262 493 VYPPILSKKLRNVITVSNLIKDKNNQYSLSPNSFYSAKYCQL------AAPGTNIYSTF-PKNSYRKLNGTSMAAPHVAA 565 (639)
T ss_pred cCChhhhccCCCEEEEeeccCCCCCcccccccccCCCCcceE------EeCCCCeeecc-CCCceeecCCCchhHHHHHH
Confidence 1222 2578999999986432 23445665 33444 56999999995 55678999999999999999
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccc-cccCHHHHHHHHhccCC
Q psy5372 390 VLALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGF-GLINTFKLVSLAKNWVN 457 (586)
Q Consensus 390 ~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~-G~vna~~Av~~a~~~~~ 457 (586)
++|||++++|+|+++||+++|+.||.+.+.. ...+|| |+||+.+||++|.....
T Consensus 566 vAALLlS~~P~LT~~qV~~iL~~TA~~l~~~--------------~n~~~wgG~LDa~kAV~~Ai~~~~ 620 (639)
T PTZ00262 566 IASLILSINPSLSYEEVIRILKESIVQLPSL--------------KNKVKWGGYLDIHHAVNLAIASKH 620 (639)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHhCccCCCC--------------CCccccCcEEcHHHHHHHHHhccc
Confidence 9999999999999999999999999876432 123344 89999999999886544
No 4
>KOG3525|consensus
Probab=100.00 E-value=1.3e-47 Score=402.49 Aligned_cols=428 Identities=44% Similarity=0.804 Sum_probs=388.7
Q ss_pred CCCCCCCCcccccCCCCCCCCCCCCchHHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCC
Q psy5372 122 DEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYE 201 (586)
Q Consensus 122 dp~~~~qw~l~~~~~~~~~~~~~i~~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~ 201 (586)
||.+..||||.+.. .+..++++..+|. .+++|+++.|+|+|+|++..||++..++....++++.....+|.|...
T Consensus 1 ~~~~~~~w~l~~~~----~~~~d~~v~~~~~-~~~~g~~~~~~i~ddgl~~~h~~~~~~~~~~~s~d~~~~~~~p~~~~~ 75 (431)
T KOG3525|consen 1 DPMSIHMWYLNAQE----FPGSDLNVQNAWC-KGYTGTRVSVTILDDGLECSHPDLRNNYDPLGSYDVNRHDNDPEPRCD 75 (431)
T ss_pred CCCccceEEecCCc----cccccceeeeccc-cCCCCCceEEEEeeccccccCcccccccCcceeEeeecCCCCcccccC
Confidence 67889999996654 4558999999999 999999999999999999999999999999999999999999988875
Q ss_pred C-CCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCCchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCch
Q psy5372 202 D-PRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPG 280 (586)
Q Consensus 202 ~-d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~ 280 (586)
. ....|||-|++-.++..+|..+..|++|++++..+++++...++...+....+....++|.+.|||..+++...+++.
T Consensus 76 ~~~~~~~g~~Ca~~~a~~~~~~~C~vg~~~~~~~~g~~~l~~~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~ 155 (431)
T KOG3525|consen 76 GTNENKHGTRCAGCVAARANNLTCGVGVAYNATIGGIRMLAGCVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPG 155 (431)
T ss_pred CCCccccCCCCCcccccccCCCcCCCCcccCccccceeeeeeecccceecccccCCCCCceeecCcCCcccCCCcCCCCc
Confidence 4 468999999999999988999999999999999999999988888888888888789999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCC
Q psy5372 281 KLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISD 360 (586)
Q Consensus 281 ~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~ap 360 (586)
....+++..+...+|.++|.++|+|.||.+..++.+..+.+..+.+.++.+..+..+...+|+..+.....++++.+..+
T Consensus 156 ~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d~c~c~~y~~~i~t~~~~~~~~~~~~p~y~~~C~~~~~s~~s~~~~~ 235 (431)
T KOG3525|consen 156 TLAREALVYGRGCGRHGKGSIFVWASGNGGTCGDSCHCDGYTNSIYTLSISCATQCGKKPQYRERCASCLASTYSSGGPT 235 (431)
T ss_pred chhhhhhhccccccccCCCCeeEEEecCccccccccccccccCcceecccccccccCCCccccccccccccccccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888877654
Q ss_pred CCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccc
Q psy5372 361 PVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGF 440 (586)
Q Consensus 361 g~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~ 440 (586)
-..|.+++....+.....|||.++|+.||.++|.++++|.+++++++.+...++....... ..|..|.+|..+.+.||+
T Consensus 236 ~~~~~~~~~~~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~-~~~~~n~~g~~~~h~~g~ 314 (431)
T KOG3525|consen 236 EECIVCTDPRHSCTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLK-GKWKSNGAGGLVSHLYGF 314 (431)
T ss_pred ceeeeecCCCccccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccC-CCceEecCCceeeeeecc
Confidence 5567777777788899999999999999999999999999999999999999999988887 499999999999999999
Q ss_pred cccCHHHHHHHHhccCCCCCcceeeeeeecCcceecCCCCceEEEEEecCCCCCCccceeeeeEEEEEEEeCCcccceEE
Q psy5372 441 GLINTFKLVSLAKNWVNVPAQAKCEIALDVGSSTGFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRI 520 (586)
Q Consensus 441 G~vna~~Av~~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~v~v~~~~~~~~~g~l~i 520 (586)
|++|+.+.+.+++.|..++.+..+......... .+.+.|. +.++|||+++++|.|+.+|+|+|
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~------------~~~~~c~-----~~~lehv~~~~~i~~~~rg~l~~ 377 (431)
T KOG3525|consen 315 GLLDAKALVSCAKTWTTVPCQHCCPKDSLLRDR------------SDTDECK-----VKYLEHVQVRVTITHPRRGDLQL 377 (431)
T ss_pred cccCcchhhhhhccCccCCcccccCcchhhccc------------cccccee-----eeeeeeEEEEEEeecccccceEE
Confidence 999999999999999999998877544311110 2222232 67899999999999999999999
Q ss_pred EEEcCCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEEECCC
Q psy5372 521 ELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTKY 573 (586)
Q Consensus 521 ~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d~~~ 573 (586)
.|.||+||.|.|+.+|+.|.+.+ |.+|+||++++|||.+.|+|+|.|.|..+
T Consensus 378 ~l~sp~g~~s~l~~~r~~d~~~~-f~dw~f~~v~~w~e~~~g~~~l~~~~~~~ 429 (431)
T KOG3525|consen 378 YLFSPSGTKSRLLAPRPRDHSYE-FTDWNFMTVHCWGENAEGTWKLEVQDVET 429 (431)
T ss_pred eeecCCceeecccccChhhhccc-ccCCcceeeeecccCcceeEEEEEecccC
Confidence 99999999999999999998888 99999999999999999999999998764
No 5
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=5e-46 Score=373.92 Aligned_cols=254 Identities=25% Similarity=0.312 Sum_probs=218.4
Q ss_pred CCCCCCCCCCcccccCCCCCCCCCCCCchHHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCC
Q psy5372 120 FTDEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPR 199 (586)
Q Consensus 120 ~~dp~~~~qw~l~~~~~~~~~~~~~i~~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~ 199 (586)
|+||.|.+||+| ..+++.++|+ .+ +|+||+|+|||+||+.+||+|... ....++++.+.+.++.
T Consensus 2 ~~~~~~~~~w~~-----------~~~~~~~~~~-~~-~G~gv~I~viDsGi~~~h~~l~~~-~~~~~~~~~~~~~~~~-- 65 (260)
T cd07484 2 PNDPYYSYQWNL-----------DQIGAPKAWD-IT-GGSGVTVAVVDTGVDPTHPDLLKV-KFVLGYDFVDNDSDAM-- 65 (260)
T ss_pred CCCcCcccCCCc-----------cccChHHHHh-hc-CCCCCEEEEEeCCCCCCCcccccC-CcccceeccCCCCCCC--
Confidence 899999999999 5678999999 77 999999999999999999998543 2334566666554432
Q ss_pred CCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCC----CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCC
Q psy5372 200 YEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDG----ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKS 275 (586)
Q Consensus 200 ~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~----~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~ 275 (586)
+..+|||||||+|++..+++.++.|+||+|+|+.+++++. ...++.++++++.+ ++++|||||||...
T Consensus 66 ---d~~~HGT~vagii~~~~~~~~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~-~~~~iin~S~g~~~---- 137 (260)
T cd07484 66 ---DDNGHGTHVAGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAAD-KGAKVINLSLGGGL---- 137 (260)
T ss_pred ---CCCCcHHHHHHHHhCccCCCCceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH-CCCeEEEecCCCCC----
Confidence 7789999999999999888889999999999999999874 36778889999888 78999999999864
Q ss_pred CCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceecccc
Q psy5372 276 MDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYS 355 (586)
Q Consensus 276 ~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~ 355 (586)
....+.++++.+.+ +|++||+||||++... ...|+..+++|+||+++..+.++.||++|+.+++.
T Consensus 138 ---~~~~~~~~~~~a~~-----~gilvV~aaGN~g~~~----~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~--- 202 (260)
T cd07484 138 ---GSTALQEAINYAWN-----KGVVVVAAAGNEGVSS----VSYPAAYPGAIAVAATDQDDKRASFSNYGKWVDVS--- 202 (260)
T ss_pred ---CCHHHHHHHHHHHH-----CCCEEEEeCCCCCCCC----CCCCCCCCCeEEEEeeCCCCCcCCcCCCCCCceEE---
Confidence 23467778877776 6999999999998752 35577889999999999999999999999988774
Q ss_pred CCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCcC
Q psy5372 356 GGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSERE 417 (586)
Q Consensus 356 ~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~ 417 (586)
+||..++++. ...+|..++|||||||+|||++|||++++| |+++||+++|+.||+++
T Consensus 203 ---apG~~i~~~~-~~~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 203 ---APGGGILSTT-PDGDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ---eCCCCcEeec-CCCCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 4888888875 446788999999999999999999999999 99999999999999875
No 6
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.1e-46 Score=383.47 Aligned_cols=288 Identities=24% Similarity=0.300 Sum_probs=227.9
Q ss_pred chHHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCC----CcccccCCCC----CCCCCCCC-CCCChHHHHHHHHhc
Q psy5372 147 IVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPE----LSYNFNAEKW----DITPRYED-PRNKHGTRCAGELVM 217 (586)
Q Consensus 147 ~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~----~~~~~~~~~~----~~~~~~~~-d~~~HGT~vAgiia~ 217 (586)
++++|+ .+++|+||+|||||+||+++||+|.+++... .++++...+. .+.|...+ |..+|||||||+|++
T Consensus 2 v~~~~~-~g~tG~gv~VaViDsGid~~hp~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~ 80 (312)
T cd07489 2 VDKLHA-EGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIAA 80 (312)
T ss_pred hhhHHh-CCCCCCCCEEEEEECCCCCCChhhhcCCCCCceeccccccCCcccccccCCCCCCCCCCCCCcHHHHHHHHhc
Confidence 678999 9999999999999999999999999876442 3355554331 11222222 678999999999999
Q ss_pred cCCCCCcceeeecCcEEEEEEccCC----CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHh
Q psy5372 218 KPNNSKCGVGVCYGARVGGVKLLDG----ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIRE 293 (586)
Q Consensus 218 ~~~n~~g~~GVAp~a~l~~~~v~~~----~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~ 293 (586)
..+| .++.||||+|+|+++|+++. ....+++++.++.+ ++++|||||||...... ...+.++++++.+
T Consensus 81 ~~~~-~~~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~-~~~~iIn~S~g~~~~~~-----~~~~~~~~~~~~~- 152 (312)
T cd07489 81 NPNA-YGFTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYE-DGADVITASLGGPSGWS-----EDPWAVVASRIVD- 152 (312)
T ss_pred CCCC-CceEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHh-cCCCEEEeCCCcCCCCC-----CCHHHHHHHHHHH-
Confidence 9665 78999999999999999863 35667888999887 79999999999754211 1356667777766
Q ss_pred ccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCC-C
Q psy5372 294 GRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHN-T 372 (586)
Q Consensus 294 ~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~-~ 372 (586)
+|+++|+||||++..... ....|+..+++|+||+++ +.||++|+.......+...+||..++++...+ +
T Consensus 153 ----~gv~iv~aaGN~g~~~~~-~~~~p~~~~~vi~Vga~~-----~~~s~~g~~~~~~~kpdv~ApG~~i~~~~~~~~~ 222 (312)
T cd07489 153 ----AGVVVTIAAGNDGERGPF-YASSPASGRGVIAVASVD-----SYFSSWGPTNELYLKPDVAAPGGNILSTYPLAGG 222 (312)
T ss_pred ----CCCEEEEECCCCCCCCCC-cccCCccCCCeEEEEEec-----CCccCCCCCCCCCcCccEEcCCCCEEEeeeCCCC
Confidence 699999999999875322 234567789999999998 77999999887666667788999999876543 3
Q ss_pred eeeccCCCCchHHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccccccCHHHHHHH
Q psy5372 373 CTCEHSGTSAAAPIAAGVLALALEAN-PNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLVSL 451 (586)
Q Consensus 373 ~~~~~~GTS~AaP~VAG~aALl~~~~-p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~Av~~ 451 (586)
.|..++|||||||+|||++|||++++ |.+++++|+++|+.||......+. .+..+ +..++..+|||+||+.+||+.
T Consensus 223 ~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~-~~~~~--~~~~~~~~G~G~vn~~~a~~~ 299 (312)
T cd07489 223 GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDG-TSALP--DLAPVAQQGAGLVNAYKALYA 299 (312)
T ss_pred ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCC-Ccccc--CCCCHhhcCcceeeHHHHhcC
Confidence 48889999999999999999999999 999999999999999998865441 22211 145678999999999999987
Q ss_pred HhccC
Q psy5372 452 AKNWV 456 (586)
Q Consensus 452 a~~~~ 456 (586)
+..+.
T Consensus 300 ~~~~~ 304 (312)
T cd07489 300 TTTLS 304 (312)
T ss_pred Ccccc
Confidence 76654
No 7
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=3.1e-45 Score=368.39 Aligned_cols=250 Identities=21% Similarity=0.184 Sum_probs=189.7
Q ss_pred CCCCCCcEEEEEecCccCCCc--------ccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcce
Q psy5372 155 NINGAGVNIIIIDDGMEYTHE--------DIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGV 226 (586)
Q Consensus 155 ~~~G~gv~VaViDtGid~~Hp--------dl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~ 226 (586)
|++|+||+|||||+|||..|| +|.+++. +....... .|..+|||||||+|+
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~~------~~~~~~~~-----~d~~gHGT~vAgii~---------- 59 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNVN------VLGDLDGG-----SGGGDEGRAMLEIIH---------- 59 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCccee------eccccCCC-----CCCCchHHHHHHHHh----------
Confidence 579999999999999999765 4433322 11111111 178899999999994
Q ss_pred eeecCcEEEEEEccCCCchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEec
Q psy5372 227 GVCYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAA 306 (586)
Q Consensus 227 GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AA 306 (586)
||||+|+|+.+++.+ ..++++++++|+.+ ++++|||||||...... .....+.++++++.++ +|++||+||
T Consensus 60 GvAP~a~l~~~~~~~-~~~~i~~ai~~a~~-~g~~Vin~S~g~~~~~~---~~~~~~~~ai~~a~~~----~GvlvVaAA 130 (275)
T cd05562 60 DIAPGAELAFHTAGG-GELDFAAAIRALAA-AGADIIVDDIGYLNEPF---FQDGPIAQAVDEVVAS----PGVLYFSSA 130 (275)
T ss_pred ccCCCCEEEEEecCC-CHHHHHHHHHHHHH-cCCCEEEecccccCCCc---ccCCHHHHHHHHHHHc----CCcEEEEeC
Confidence 799999999999865 47889999999998 79999999999753221 1112467788877773 499999999
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCC---------------CCCcceeccccCCCCCCC-ceEEecCC
Q psy5372 307 GNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSE---------------ECTGLIATAYSGGISDPV-KIITTDVH 370 (586)
Q Consensus 307 GN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~---------------~G~~~~~~~~~~~~apg~-~i~st~~~ 370 (586)
||++.. .....|+..+++|+|||++..+.+..||+ +++.......++..+||. .+.++ ..
T Consensus 131 GN~g~~---~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~~~~~~~di~Apgg~~~~~~-~~ 206 (275)
T cd05562 131 GNDGQS---GSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVD-GD 206 (275)
T ss_pred CCCCCC---CCccCCCCCCCeEEEEeeccCCCcccccccccCCCcccccCCcccCcCCCCCcCCeEEcCCcccccCC-Cc
Confidence 999984 23345788899999999999888775543 222222222333455643 33333 35
Q ss_pred CCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccccccCHHHHHH
Q psy5372 371 NTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLVS 450 (586)
Q Consensus 371 ~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~Av~ 450 (586)
++.|..++|||||||||||++|||++++|+|++.|||++|++||++..... ++..||||+||+.+||+
T Consensus 207 ~~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g------------~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 207 GDGPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPG------------YDNASGSGLVDADRAVA 274 (275)
T ss_pred CCceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC------------CCCCcCcCcccHHHHhh
Confidence 667889999999999999999999999999999999999999999875322 47789999999999996
No 8
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=1.3e-44 Score=361.11 Aligned_cols=240 Identities=21% Similarity=0.243 Sum_probs=191.0
Q ss_pred HHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeec
Q psy5372 151 YQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCY 230 (586)
Q Consensus 151 w~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp 230 (586)
|+ ++++|+||+|||||+||+.+||+|++.. . ..++.... .. .|..+|||||||||++..+ ...||||
T Consensus 1 W~-~g~tG~gv~VaviDsGv~~~hp~l~~~~-~--~~~~~~~~-~~-----~d~~gHGT~VAGiIa~~~~---~~~GvAp 67 (255)
T cd07479 1 WQ-LGYTGAGVKVAVFDTGLAKDHPHFRNVK-E--RTNWTNEK-TL-----DDGLGHGTFVAGVIASSRE---QCLGFAP 67 (255)
T ss_pred CC-CCCCCCCCEEEEEeCCCCCCCcchhccc-c--ccccCCCC-CC-----CCCCCcHHHHHHHHHccCC---CceeECC
Confidence 77 8999999999999999999999998632 2 22333221 11 1678999999999999743 3589999
Q ss_pred CcEEEEEEccCCC----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEec
Q psy5372 231 GARVGGVKLLDGE----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAA 306 (586)
Q Consensus 231 ~a~l~~~~v~~~~----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AA 306 (586)
+|+|+++|+++.. .+.++++++|++. ++++|||||||..... ...+.+++.++.. +|+++|+||
T Consensus 68 ~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~-~~~~Vin~S~G~~~~~------~~~~~~~~~~~~~-----~gi~vV~aa 135 (255)
T cd07479 68 DAEIYIFRVFTNNQVSYTSWFLDAFNYAIL-TKIDVLNLSIGGPDFM------DKPFVDKVWELTA-----NNIIMVSAI 135 (255)
T ss_pred CCEEEEEEeecCCCCchHHHHHHHHHhhhh-cCCCEEEeeccCCCCC------CcHHHHHHHHHHH-----CCcEEEEEc
Confidence 9999999998653 4567889999887 7899999999975321 1235566666655 699999999
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCccee------ccccCCCCCCCceEEecCCCCeeeccCCC
Q psy5372 307 GNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIA------TAYSGGISDPVKIITTDVHNTCTCEHSGT 380 (586)
Q Consensus 307 GN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~------~~~~~~~apg~~i~st~~~~~~~~~~~GT 380 (586)
||++.... ....|+..+++|+|||++.++.++.||++|+.... ...++..+||..|+++.. .+.|..++||
T Consensus 136 GN~g~~~~--~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~-~~~~~~~sGT 212 (255)
T cd07479 136 GNDGPLYG--TLNNPADQMDVIGVGGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL-KGGCRALSGT 212 (255)
T ss_pred CCCCCCcc--cccCcccCCCceEEeeeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeecccc-CCCeEEeccH
Confidence 99987422 23457788999999999999999999999975422 112344678999988754 4457789999
Q ss_pred CchHHHHHHHHHHHHhhCC----CCCHHHHHHHHHhcCCcCC
Q psy5372 381 SAAAPIAAGVLALALEANP----NMTWRDCQHILAWTSEREP 418 (586)
Q Consensus 381 S~AaP~VAG~aALl~~~~p----~lt~~~v~~~L~~tA~~~~ 418 (586)
|||||+|||++|||++++| .|+|.+||++|++||++++
T Consensus 213 S~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 213 SVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 9999999999999999998 7999999999999999863
No 9
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=3.2e-44 Score=375.78 Aligned_cols=283 Identities=22% Similarity=0.253 Sum_probs=219.9
Q ss_pred HHHHcCCC-CCCCcEEEEEecCccCCCcccccCCCCC---------------------------CcccccCCCCCCCCCC
Q psy5372 149 PVYQELNI-NGAGVNIIIIDDGMEYTHEDIKDSFAPE---------------------------LSYNFNAEKWDITPRY 200 (586)
Q Consensus 149 ~aw~~~~~-~G~gv~VaViDtGid~~Hpdl~~~~~~~---------------------------~~~~~~~~~~~~~~~~ 200 (586)
++|+ .+. +|+||+|+|||+||+++||+|.+..... .+|+|.++..++.+.
T Consensus 1 ~~w~-~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (346)
T cd07475 1 PLWD-KGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDILDE- 78 (346)
T ss_pred Chhh-hcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCccCCC-
Confidence 3799 655 9999999999999999999998754433 245666665554432
Q ss_pred CCCCCChHHHHHHHHhccCCC---CCcceeeecCcEEEEEEccCC------CchhHHHHHHhhhcCCCCeEEEcCCCCCC
Q psy5372 201 EDPRNKHGTRCAGELVMKPNN---SKCGVGVCYGARVGGVKLLDG------ETTDLIESKALQFGLDKVDIYSGSWGPPD 271 (586)
Q Consensus 201 ~~d~~~HGT~vAgiia~~~~n---~~g~~GVAp~a~l~~~~v~~~------~~~~~~~a~~~~~~~~~~~Vin~S~G~~~ 271 (586)
.+..+|||||||||+|..++ +.++.||||+|+|+++|+++. ....++.+++++.+ ++++|||||||...
T Consensus 79 -~~~~~HGT~vagiiag~~~~~~~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~-~g~~Vin~S~G~~~ 156 (346)
T cd07475 79 -DDGSSHGMHVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK-LGADVINMSLGSTA 156 (346)
T ss_pred -CCCCCcHHHHHHHHhcCCCccccCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCCcCC
Confidence 27789999999999999765 568999999999999999963 25667888888877 79999999999865
Q ss_pred CCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCC------------CCCCCCCceEEEEeeec-----
Q psy5372 272 DGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCA------------ADGYINSIYTIAIASAR----- 334 (586)
Q Consensus 272 ~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~------------~~~~~~~~~vi~Vga~~----- 334 (586)
... .....+.++++++.. +|++||+||||++....... ...|...+++|+||+++
T Consensus 157 ~~~---~~~~~~~~~~~~a~~-----~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~~~~ 228 (346)
T cd07475 157 GFV---DLDDPEQQAIKRARE-----AGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPN 228 (346)
T ss_pred CCC---CCCCHHHHHHHHHhh-----CCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccccCC
Confidence 432 233467788888776 69999999999987533221 22455678999999998
Q ss_pred -CCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhh----CCCCCHHH----
Q psy5372 335 -EDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEA----NPNMTWRD---- 405 (586)
Q Consensus 335 -~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~----~p~lt~~~---- 405 (586)
..+.+..||++|+......+++..+||..++++. .+++|..++|||||||+|||++|||+|+ +|.|++.+
T Consensus 229 ~~~~~~~~~S~~G~~~~~~~~pdi~apG~~i~s~~-~~~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ 307 (346)
T cd07475 229 PNGGQMSGFSSWGPTPDLDLKPDITAPGGNIYSTV-NDNTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDL 307 (346)
T ss_pred CCCCccCCCcCCCCCcccCcCCeEEeCCCCeEEec-CCCceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHH
Confidence 6677889999999877666677788999999985 4567889999999999999999999998 79999887
Q ss_pred HHHHHHhcCCcCCCCCCCCccccCCCcccCCcccccccCHHHHHH
Q psy5372 406 CQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLVS 450 (586)
Q Consensus 406 v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~Av~ 450 (586)
||++|+.||.+..... ..........+|||+||+.+||+
T Consensus 308 ik~~l~~ta~~~~~~~------~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 308 VKNLLMNTATPPLDSE------DTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred HHHHHHhcCCcccccC------CCCccCCccccCcchhcHHHhhC
Confidence 6778888888421111 01111234577999999999984
No 10
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.4e-44 Score=354.88 Aligned_cols=232 Identities=22% Similarity=0.220 Sum_probs=193.2
Q ss_pred cEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEcc
Q psy5372 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL 240 (586)
Q Consensus 161 v~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~ 240 (586)
|+|||||+||+.+||+|++++... +.+... .+ .+..+|||||||||++..++. .||||+|+|+.+|++
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~~~--~~~~~~--~~-----~~~~~HGT~vAgiia~~~~~~---~Gvap~a~i~~~~v~ 68 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVIAR--LFFAGP--GA-----PAPSAHGTAVASLLAGAGAQR---PGLLPGADLYGADVF 68 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcccc--ccCCCC--CC-----CCCCCCHHHHHHHHhCCCCCC---cccCCCCEEEEEEEe
Confidence 799999999999999998875442 222221 11 177899999999999986554 899999999999998
Q ss_pred CC-------CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCC
Q psy5372 241 DG-------ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNG 313 (586)
Q Consensus 241 ~~-------~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~ 313 (586)
+. ....++++++|+.. ++++|||||||... ...+.++++++.+ +|+++|+||||++...
T Consensus 69 ~~~~~~~~~~~~~i~~ai~~a~~-~g~~VIn~S~g~~~--------~~~l~~ai~~a~~-----~gilvv~AaGN~g~~~ 134 (239)
T cd05561 69 GRAGGGEGASALALARALDWLAE-QGVRVVNISLAGPP--------NALLAAAVAAAAA-----RGMVLVAAAGNDGPAA 134 (239)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-CCCCEEEeCCCCCC--------CHHHHHHHHHHHH-----CCCEEEEecCCCCCCC
Confidence 63 35678999999988 89999999999642 2357788888877 6999999999998742
Q ss_pred CCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHH
Q psy5372 314 DNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLAL 393 (586)
Q Consensus 314 ~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aAL 393 (586)
....|+..+++|+|++++.++.+..||++|+.+++ .+||..|+++. .++.|..++|||||||+|||++||
T Consensus 135 ---~~~~Pa~~~~vi~V~a~~~~~~~~~~s~~g~~~di------~ApG~~i~~~~-~~~~~~~~sGTS~AaP~vaG~aAl 204 (239)
T cd05561 135 ---PPLYPAAYPGVIAVTAVDARGRLYREANRGAHVDF------AAPGVDVWVAA-PGGGYRYVSGTSFAAPFVTAALAL 204 (239)
T ss_pred ---CccCcccCCCceEEEeecCCCCccccCCCCCcceE------Eccccceeccc-CCCCEEEeCCHHHHHHHHHHHHHH
Confidence 22346677999999999999999999999998877 45899999875 455688999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCccccc
Q psy5372 394 ALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFG 441 (586)
Q Consensus 394 l~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G 441 (586)
|++++| |+++||+++|+.||++.+..+ ++..||||
T Consensus 205 l~~~~p-~~~~~i~~~L~~ta~~~g~~~------------~d~~~G~G 239 (239)
T cd05561 205 LLQASP-LAPDDARARLAATAKDLGPPG------------RDPVFGYG 239 (239)
T ss_pred HHhcCC-CCHHHHHHHHHHHhhccCCCC------------cCCCcCCC
Confidence 999999 999999999999999876544 57899998
No 11
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3e-44 Score=366.55 Aligned_cols=248 Identities=21% Similarity=0.178 Sum_probs=181.1
Q ss_pred CCCcEEEEEecCccCCCcccccCCCCCC------------cccccCCCCCCCCCCCCCCCChHHHHHHHHhccCC-----
Q psy5372 158 GAGVNIIIIDDGMEYTHEDIKDSFAPEL------------SYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPN----- 220 (586)
Q Consensus 158 G~gv~VaViDtGid~~Hpdl~~~~~~~~------------~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~----- 220 (586)
|+||+|||||||||.+||||.++..... ++++..+.. + ...|.++|||||||||+|..+
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~~~~~~~d~~~~~~~g~d~~~~~~---~-~~~D~~gHGThvAGiiag~~~~~~~~ 76 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNFSWKLKFDYKAYLLPGMDKWGGFY---V-IMYDFFSHGTSCASVAAGRGKMEYNL 76 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCCCcccccCcCCCccCCcCCCCCcc---C-CCCCccccchhHHHHHhccCcccccc
Confidence 7999999999999999999987543211 122222111 0 011889999999999999854
Q ss_pred ----CCCcceeeecCcEEEEEEccCC-C-c---------hhHHHHHHhhhc-CCCCeEEEcCCCCCCCCCCCCCchHHHH
Q psy5372 221 ----NSKCGVGVCYGARVGGVKLLDG-E-T---------TDLIESKALQFG-LDKVDIYSGSWGPPDDGKSMDGPGKLSK 284 (586)
Q Consensus 221 ----n~~g~~GVAp~a~l~~~~v~~~-~-~---------~~~~~a~~~~~~-~~~~~Vin~S~G~~~~~~~~~~~~~~~~ 284 (586)
+..++.||||+|+|+++|+++. . . .....+++|.+. .++++|||||||..........+.....
T Consensus 77 ~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~g~~~~ 156 (311)
T cd07497 77 YGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDIS 156 (311)
T ss_pred cccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCccccccCcCHH
Confidence 2457899999999999999852 1 1 111224556554 3689999999997543221111111122
Q ss_pred HHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecC---------------CCCCCCCCCCCCcc
Q psy5372 285 AAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASARE---------------DGQSPFYSEECTGL 349 (586)
Q Consensus 285 ~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~---------------~~~~a~~S~~G~~~ 349 (586)
..+.+++.. .+|+++|+||||+|.. .+....|+..+++|+|||++. .+.++.||++||..
T Consensus 157 ~~~~d~~~~---~~Gv~vV~AAGN~g~~--~~~~~~Pa~~~~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~ 231 (311)
T cd07497 157 SLVIDALVT---YTGVPIVSAAGNGGPG--YGTITAPGAASLAISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRGPSI 231 (311)
T ss_pred HHHHHHHHh---cCCCEEEEeCCCCCCC--CccccCccCCCCeEEEEeccCCcccchhhhccccCCCCCccccccCCCCc
Confidence 223332221 2799999999999874 234456788899999999975 35678899999998
Q ss_pred eeccccCCCCCCCceEEecCCC---------CeeeccCCCCchHHHHHHHHHHHHhhCC------CCCHHHHHHHHHhcC
Q psy5372 350 IATAYSGGISDPVKIITTDVHN---------TCTCEHSGTSAAAPIAAGVLALALEANP------NMTWRDCQHILAWTS 414 (586)
Q Consensus 350 ~~~~~~~~~apg~~i~st~~~~---------~~~~~~~GTS~AaP~VAG~aALl~~~~p------~lt~~~v~~~L~~tA 414 (586)
+...+++..+||..++++.+.. ..|..++|||||||||||++|||++++| .+++.+||++|++||
T Consensus 232 ~g~~kPdv~ApG~~i~s~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 232 AGDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ccCCCCceeccCcceEeecccCCCCcccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 7778888899999998875432 2588899999999999999999999876 689999999999987
No 12
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=5.9e-44 Score=363.54 Aligned_cols=239 Identities=22% Similarity=0.264 Sum_probs=187.9
Q ss_pred CCcEEEEEecCccCCCcccccCC--------------------CCCCcccccCCC-------CCCCCC----------CC
Q psy5372 159 AGVNIIIIDDGMEYTHEDIKDSF--------------------APELSYNFNAEK-------WDITPR----------YE 201 (586)
Q Consensus 159 ~gv~VaViDtGid~~Hpdl~~~~--------------------~~~~~~~~~~~~-------~~~~~~----------~~ 201 (586)
++|+|||||||||++||||++++ +...+|+|.... .++... ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGYGNNDVNG 80 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccccccccCC
Confidence 58999999999999999999764 234567776421 011000 00
Q ss_pred C-CCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCC---CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCC
Q psy5372 202 D-PRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDG---ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMD 277 (586)
Q Consensus 202 ~-d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~---~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~ 277 (586)
+ +..+|||||||||++..+|+.|+.||||+|+|+++|+++. ...++++|++|+.. ++++|||||||....
T Consensus 81 ~~~~~gHGT~VAGiIaa~~~n~~g~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~-~g~~IiN~S~G~~~~----- 154 (291)
T cd07483 81 PISDADHGTHVAGIIAAVRDNGIGIDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVD-NGAKVINMSFGKSFS----- 154 (291)
T ss_pred CCCCCCcHHHHHHHHhCcCCCCCceEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHH-CCCcEEEeCCCCCCC-----
Confidence 1 4789999999999999999999999999999999999752 35778899999987 899999999996421
Q ss_pred CchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCC-CC------CCCCCceEEEEeeecCCCC---CCCCCCCCC
Q psy5372 278 GPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCA-AD------GYINSIYTIAIASAREDGQ---SPFYSEECT 347 (586)
Q Consensus 278 ~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~-~~------~~~~~~~vi~Vga~~~~~~---~a~~S~~G~ 347 (586)
.....+.++++++.+ +|+|+|+||||++...+... ++ .+...+++|+|||++..+. ++.||++|+
T Consensus 155 ~~~~~~~~ai~~a~~-----~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~~~~~~~~~Sn~G~ 229 (291)
T cd07483 155 PNKEWVDDAIKYAES-----KGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYENNLVANFSNYGK 229 (291)
T ss_pred CccHHHHHHHHHHHh-----CCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccCCcccccccCCCCC
Confidence 122356777777765 79999999999997543221 11 1223478999999987654 689999997
Q ss_pred -cceeccccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 348 -GLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 348 -~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
.+++ .+||..|+++. .++.|..++|||||||+|||++|||++++|+|+++|||++|+.||+
T Consensus 230 ~~vdi------~APG~~i~s~~-~~~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 230 KNVDV------FAPGERIYSTT-PDNEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CceEE------EeCCCCeEecc-CcCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 3444 45899999985 4566889999999999999999999999999999999999999984
No 13
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.3e-44 Score=358.41 Aligned_cols=246 Identities=21% Similarity=0.184 Sum_probs=188.0
Q ss_pred CCchHHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCc
Q psy5372 145 LNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKC 224 (586)
Q Consensus 145 i~~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g 224 (586)
|++.++|+..+..|+||+|+|||+|||.+||||++++.... +. . .+ .|.++|||||||||+|. +|+.|
T Consensus 2 i~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~~--~~---~-~~-----~d~~gHGT~VAGiIaa~-~n~~G 69 (277)
T cd04843 2 INARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITLI--SG---L-TD-----QADSDHGTAVLGIIVAK-DNGIG 69 (277)
T ss_pred CChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccccc--CC---C-CC-----CCCCCCcchhheeeeee-cCCCc
Confidence 78999999335458999999999999999999998765421 11 0 01 17789999999999997 68889
Q ss_pred ceeeecCcEEEEEEccCCCchhHHHHHHhhhc---CCCCeEEEcCCCCCCCCCCCC--CchHHHHHHHHHHHHhccCCCC
Q psy5372 225 GVGVCYGARVGGVKLLDGETTDLIESKALQFG---LDKVDIYSGSWGPPDDGKSMD--GPGKLSKAAIDRGIREGRQGKG 299 (586)
Q Consensus 225 ~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~---~~~~~Vin~S~G~~~~~~~~~--~~~~~~~~a~~~a~~~~~~~~G 299 (586)
+.||||+|+|+++|+++ .+++++++.+++. ..++.+||||||......... .....+.++++++.. +|
T Consensus 70 ~~GvAp~a~l~~i~v~~--~~~~~~ai~~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~-----~G 142 (277)
T cd04843 70 VTGIAHGAQAAVVSSTR--VSNTADAILDAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATD-----LG 142 (277)
T ss_pred eeeeccCCEEEEEEecC--CCCHHHHHHHHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHh-----CC
Confidence 99999999999999986 3455566666554 246788999999864332211 122234556666654 79
Q ss_pred cEEEEecCCCCCCCCCCCC-------CCCC--CCceEEEEeeecCCC-C-CCCCCCCCCcceeccccCCCCCCCceEEec
Q psy5372 300 VLFVFAAGNGKYNGDNCAA-------DGYI--NSIYTIAIASAREDG-Q-SPFYSEECTGLIATAYSGGISDPVKIITTD 368 (586)
Q Consensus 300 i~~V~AAGN~g~~~~~~~~-------~~~~--~~~~vi~Vga~~~~~-~-~a~~S~~G~~~~~~~~~~~~apg~~i~st~ 368 (586)
+++|+||||++...+.+.+ ..++ ..+++|+|||++.++ . ++.|||+|+.+++. +||..|+++.
T Consensus 143 ~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~~~~~~~~fSn~G~~vdi~------APG~~i~s~~ 216 (277)
T cd04843 143 IIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSSTTGHTRLAFSNYGSRVDVY------GWGENVTTTG 216 (277)
T ss_pred cEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCCCCCccccccCCCCccceE------cCCCCeEecC
Confidence 9999999999886443332 1222 236799999999764 3 79999999988874 5899999986
Q ss_pred CCCC---------eeeccCCCCchHHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCC
Q psy5372 369 VHNT---------CTCEHSGTSAAAPIAAGVLALALEA-----NPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 369 ~~~~---------~~~~~~GTS~AaP~VAG~aALl~~~-----~p~lt~~~v~~~L~~tA~ 415 (586)
..+. +|..++|||||||+|||++|||++. +|+|+++|||++|+.|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 217 YGDLQDLGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCcccccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 5432 4578999999999999999999863 599999999999999874
No 14
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=5.7e-43 Score=350.63 Aligned_cols=245 Identities=24% Similarity=0.281 Sum_probs=203.1
Q ss_pred CcccccCCCCCCCCCCCCchH-HHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCh
Q psy5372 129 WYEQDYRLSNSSKKLDLNIVP-VYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKH 207 (586)
Q Consensus 129 w~l~~~~~~~~~~~~~i~~~~-aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~H 207 (586)
|+|+.+.+ ....... .|. .+++|+||+|||||+||+.+||+|.++... .+++...... .|..+|
T Consensus 1 w~l~~~~~------~~~~~~~~~~~-~~~~G~gv~VaViDsGi~~~h~~~~~~~~~--~~~~~~~~~~------~d~~~H 65 (255)
T cd04077 1 WGLDRISQ------RDLPLDGTYYY-DSSTGSGVDVYVLDTGIRTTHVEFGGRAIW--GADFVGGDPD------SDCNGH 65 (255)
T ss_pred CCccccCC------CCCCCCCceEe-cCCCCCCcEEEEEcCCCCCCChhhhCCeee--eeecCCCCCC------CCCCcc
Confidence 88877765 2333333 666 789999999999999999999999987544 4555544321 178899
Q ss_pred HHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCC----chhHHHHHHhhhcCC----CCeEEEcCCCCCCCCCCCCCc
Q psy5372 208 GTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGE----TTDLIESKALQFGLD----KVDIYSGSWGPPDDGKSMDGP 279 (586)
Q Consensus 208 GT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~----~~~~~~a~~~~~~~~----~~~Vin~S~G~~~~~~~~~~~ 279 (586)
||||||+|++.. .||||+|+|+++|+++.. .+.++.++.|+.... +++|||||||...
T Consensus 66 GT~vAgiia~~~------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~-------- 131 (255)
T cd04077 66 GTHVAGTVGGKT------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA-------- 131 (255)
T ss_pred HHHHHHHHHccc------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--------
Confidence 999999999873 799999999999998743 677888999888753 6999999999753
Q ss_pred hHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCC
Q psy5372 280 GKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGIS 359 (586)
Q Consensus 280 ~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~a 359 (586)
...+.++++++.+ +|+++|+||||++.... ...|+..+++|+||+++.++.++.||++|+.+++. +
T Consensus 132 ~~~~~~~~~~~~~-----~g~liV~aaGN~g~~~~---~~~pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~i~------a 197 (255)
T cd04077 132 STALDAAVAAAVN-----AGVVVVVAAGNSNQDAC---NYSPASAPEAITVGATDSDDARASFSNYGSCVDIF------A 197 (255)
T ss_pred CHHHHHHHHHHHH-----CCCEEEEeCCCCCCCCC---CcCccCCCceEEEeccCCCCCccCcccCCCCCcEE------e
Confidence 2367788888887 69999999999987522 45677889999999999999999999999988774 4
Q ss_pred CCCceEEecCC-CCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCc
Q psy5372 360 DPVKIITTDVH-NTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSER 416 (586)
Q Consensus 360 pg~~i~st~~~-~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~ 416 (586)
||..|.++... +..|..++|||||||+|||++|||++++|+++++|||++|++||++
T Consensus 198 pG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 198 PGVDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCCCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 88888887642 5578899999999999999999999999999999999999999974
No 15
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=7.2e-43 Score=350.26 Aligned_cols=246 Identities=19% Similarity=0.148 Sum_probs=195.3
Q ss_pred HHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeee
Q psy5372 150 VYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVC 229 (586)
Q Consensus 150 aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVA 229 (586)
+|+ .+++|+||+|||||+|+|.+||+|+++.... ++....... ...+..+|||||||+|++...+ ++.|||
T Consensus 2 lw~-~g~~g~gV~VaViDsGid~~hp~l~~~~~~~--~~~~~~~~~----~~~~~~gHGT~VAgii~g~~~~--~~~GvA 72 (267)
T cd07476 2 LFA-FGGGDPRITIAILDGPVDRTHPCFRGANLTP--LFTYAAAAC----QDGGASAHGTHVASLIFGQPCS--SVEGIA 72 (267)
T ss_pred cee-ccCCCCCeEEEEeCCCcCCCChhhCCCcccc--ccCccccCC----CCCCCCCcHHHHHHHHhcCCCC--CceeEC
Confidence 688 9999999999999999999999998843221 111110000 0116789999999999997543 579999
Q ss_pred cCcEEEEEEccCCC-----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEE
Q psy5372 230 YGARVGGVKLLDGE-----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVF 304 (586)
Q Consensus 230 p~a~l~~~~v~~~~-----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~ 304 (586)
|+|+|+.++++... ..++.+++.++.. ++++|||||||..... ......+.++++++.+ +|+++|+
T Consensus 73 p~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~-~g~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~-----~gvlvv~ 143 (267)
T cd07476 73 PLCRGLNIPIFAEDRRGCSQLDLARAINLALE-QGAHIINISGGRLTQT---GEADPILANAVAMCQQ-----NNVLIVA 143 (267)
T ss_pred cCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHH-CCCCEEEecCCcCCCC---CCCCHHHHHHHHHHHH-----CCCEEEE
Confidence 99999999997532 4678899999987 8899999999975421 1233467788887776 6999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeeccCCCCchH
Q psy5372 305 AAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAA 384 (586)
Q Consensus 305 AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~Aa 384 (586)
||||++.. ....|+..+++|+|||++..+.+..||++|+... .+...+||..|+++. +++.|..++||||||
T Consensus 144 AaGN~g~~----~~~~Pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~---~~~l~ApG~~i~~~~-~~~~~~~~sGTS~Aa 215 (267)
T cd07476 144 AAGNEGCA----CLHVPAALPSVLAVGAMDDDGLPLKFSNWGADYR---KKGILAPGENILGAA-LGGEVVRRSGTSFAA 215 (267)
T ss_pred ecCCCCCC----CCCCcccCCceEEEEeecCCCCeeeecCCCCCCC---CceEEecCCCceeec-CCCCeEEeccHHHHH
Confidence 99999864 2345677899999999999999999999997542 122356999999885 456688999999999
Q ss_pred HHHHHHHHHHHhhCCC----CCHHHHHHHHHhcCCcCCCCC
Q psy5372 385 PIAAGVLALALEANPN----MTWRDCQHILAWTSEREPLSH 421 (586)
Q Consensus 385 P~VAG~aALl~~~~p~----lt~~~v~~~L~~tA~~~~~~~ 421 (586)
|+|||++|||++.+|. +++++||++|++||+++....
T Consensus 216 P~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 216 AIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred HHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 9999999999999887 999999999999999986543
No 16
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=356.31 Aligned_cols=270 Identities=25% Similarity=0.270 Sum_probs=210.1
Q ss_pred CCCcEEEEEecCccCCCcccccCC----CCCCcccccCCCCCCCCCC----------CCCCCChHHHHHHHHhccCCCCC
Q psy5372 158 GAGVNIIIIDDGMEYTHEDIKDSF----APELSYNFNAEKWDITPRY----------EDPRNKHGTRCAGELVMKPNNSK 223 (586)
Q Consensus 158 G~gv~VaViDtGid~~Hpdl~~~~----~~~~~~~~~~~~~~~~~~~----------~~d~~~HGT~vAgiia~~~~n~~ 223 (586)
|+||+|+|||+||+++||+|.++. ....++++.....++.+.. ..+..+|||||||+|++..+|+.
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vAgiiag~~~n~~ 80 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGNGVNVG 80 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCCCCCceeeeeECccCCCCcccccccccccccCCCCCCCCcHHHHHHHHhcCCCccC
Confidence 899999999999999999998321 1223566665544443211 11578999999999999988999
Q ss_pred cceeeecCcEEEEEEccC----CCchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCC
Q psy5372 224 CGVGVCYGARVGGVKLLD----GETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKG 299 (586)
Q Consensus 224 g~~GVAp~a~l~~~~v~~----~~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~G 299 (586)
++.||||+|+|+.+|+++ ....++++++++++. ++++|||||||..... +...+.++++++.+ +|
T Consensus 81 ~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~-~~~~Iin~S~g~~~~~-----~~~~~~~~~~~~~~-----~g 149 (295)
T cd07474 81 TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVD-DGMDVINLSLGSSVNG-----PDDPDAIAINNAVK-----AG 149 (295)
T ss_pred ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHH-cCCCEEEeCCCCCCCC-----CCCHHHHHHHHHHh-----cC
Confidence 999999999999999986 247788999999988 7999999999975432 23367788888877 69
Q ss_pred cEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecC-----CCCCCCCCCCC-CcceeccccCCCCCCCceEEecCC-CC
Q psy5372 300 VLFVFAAGNGKYNGDNCAADGYINSIYTIAIASARE-----DGQSPFYSEEC-TGLIATAYSGGISDPVKIITTDVH-NT 372 (586)
Q Consensus 300 i~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~-----~~~~a~~S~~G-~~~~~~~~~~~~apg~~i~st~~~-~~ 372 (586)
+++|+||||++.... ....|+..+++|+||+++. ......|++.| +.......++..+||..++++... +.
T Consensus 150 il~V~aAGN~g~~~~--~~~~pa~~~~~i~Vga~~~~~~~~~~~~~~~~s~~~~~~~~~~kpdv~apG~~i~~~~~~~~~ 227 (295)
T cd07474 150 VVVVAAAGNSGPAPY--TIGSPATAPSAITVGASTVADVAEADTVGPSSSRGPPTSDSAIKPDIVAPGVDIMSTAPGSGT 227 (295)
T ss_pred CEEEEECCCCCCCCC--cccCCCcCCCeEEEeeeeccCcCCCCceeccCCCCCCCCCCCcCCCEECCcCceEeeccCCCC
Confidence 999999999987532 2345778899999999862 33344455544 333344455667899999988644 25
Q ss_pred eeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccccccCHHHH
Q psy5372 373 CTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKL 448 (586)
Q Consensus 373 ~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~A 448 (586)
.|..++|||||||+|||++|||++++|+|++++||++|+.||++....+. .+ .++..+|||+||+.+|
T Consensus 228 ~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~-~~-------~~~~~~G~G~l~~~~A 295 (295)
T cd07474 228 GYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG-VV-------YPVSRQGAGRVDALRA 295 (295)
T ss_pred ceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC-Cc-------CChhccCcceeccccC
Confidence 68899999999999999999999999999999999999999998865441 11 1467899999999876
No 17
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=1.5e-42 Score=349.20 Aligned_cols=241 Identities=25% Similarity=0.298 Sum_probs=191.4
Q ss_pred CCCcEEEEEecCccCCCcccccCCCCCCc------ccccCCCC-CCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeec
Q psy5372 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELS------YNFNAEKW-DITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCY 230 (586)
Q Consensus 158 G~gv~VaViDtGid~~Hpdl~~~~~~~~~------~~~~~~~~-~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp 230 (586)
|+||+|||||+||+.+||+|.+++..... +++.+... .+.| .|..+|||||||+|++..+++.+ .||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~d~~~HGT~vagii~g~~~~~~~-~GvAp 76 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLP---YDDNGHGTHTMGTMVGNDGDGQQ-IGVAP 76 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhcccccCCCCcccccccccCCCCCCCC---CCCCCchhhhhhheeecCCCCCc-eEECC
Confidence 89999999999999999999987433211 11111110 0111 16789999999999998665544 99999
Q ss_pred CcEEEEEEccCC---CchhHHHHHHhhhc-----------CCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccC
Q psy5372 231 GARVGGVKLLDG---ETTDLIESKALQFG-----------LDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQ 296 (586)
Q Consensus 231 ~a~l~~~~v~~~---~~~~~~~a~~~~~~-----------~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~ 296 (586)
+|+|+.+|+++. ...++++++++++. .++++|||||||.... ....+..+++.+..
T Consensus 77 ~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~------~~~~~~~~~~~~~~---- 146 (264)
T cd07481 77 GARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG------DNEWLQPAVAAWRA---- 146 (264)
T ss_pred CCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC------CchHHHHHHHHHHH----
Confidence 999999999874 35678888888764 2578999999998643 12355666666655
Q ss_pred CCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeec
Q psy5372 297 GKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCE 376 (586)
Q Consensus 297 ~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~ 376 (586)
+|++||+||||++.....+. ..|+.++++|+||+++.++.++.||++|+......+++..+||..|.++. .+++|..
T Consensus 147 -~gvlvV~aaGN~~~~~~~~~-~~pa~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~~~~dv~ApG~~i~s~~-~~~~~~~ 223 (264)
T cd07481 147 -AGIFPVFAAGNDGPRCSTLN-APPANYPESFAVGATDRNDVLADFSSRGPSTYGRIKPDISAPGVNIRSAV-PGGGYGS 223 (264)
T ss_pred -CCCEEEEECCCCCCCCCCCc-CCCCcCCceEEEEecCCCCCCccccCCCCCCCCCcCceEEECCCCeEEec-CCCceEe
Confidence 79999999999987543332 46778899999999999999999999999885555556678999999885 4577889
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCC--CCHHHHHHHHHhcCC
Q psy5372 377 HSGTSAAAPIAAGVLALALEANPN--MTWRDCQHILAWTSE 415 (586)
Q Consensus 377 ~~GTS~AaP~VAG~aALl~~~~p~--lt~~~v~~~L~~tA~ 415 (586)
++|||||||+|||++|||+|++|+ |+++|||++|+.||+
T Consensus 224 ~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 224 SSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred eCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999 999999999999985
No 18
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.1e-42 Score=346.33 Aligned_cols=242 Identities=19% Similarity=0.202 Sum_probs=194.7
Q ss_pred CcEEEEEecCccCCCcccc-----cCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEE
Q psy5372 160 GVNIIIIDDGMEYTHEDIK-----DSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARV 234 (586)
Q Consensus 160 gv~VaViDtGid~~Hpdl~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l 234 (586)
||+|||||+||+.+||+|. .+.....+++|.++..++ ..+..+|||||||+|++..++ .+.||||+|+|
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~HGT~vagiia~~~~~--~~~GvAp~a~l 74 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLFKNLRILGEYDFVDNSNNT----NYTDDDHGTAVLSTMAGYTPG--VMVGTAPNASY 74 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccccCCceeeeecCccCCCCC----CCCCCCchhhhheeeeeCCCC--CEEEeCCCCEE
Confidence 7999999999999999994 333444567887776554 117789999999999998553 47999999999
Q ss_pred EEEEccCCC------chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCC--------CCCchHHHHHHHHHHHHhccCCCCc
Q psy5372 235 GGVKLLDGE------TTDLIESKALQFGLDKVDIYSGSWGPPDDGKS--------MDGPGKLSKAAIDRGIREGRQGKGV 300 (586)
Q Consensus 235 ~~~~v~~~~------~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~--------~~~~~~~~~~a~~~a~~~~~~~~Gi 300 (586)
+.+|+.+.. ...++.+++++.. ++++|||||||....... ..+....+.++++++.. +|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~ai~~a~~-~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a~~-----~gi 148 (261)
T cd07493 75 YLARTEDVASETPVEEDNWVAAAEWADS-LGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIAAS-----KGM 148 (261)
T ss_pred EEEEecccCCcccccHHHHHHHHHHHHH-cCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHHHh-----CCe
Confidence 999986532 3456788888776 789999999997653321 11222356677777766 699
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeeccCCC
Q psy5372 301 LFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGT 380 (586)
Q Consensus 301 ~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GT 380 (586)
++|+||||++... ......|+..+++|+|||++.++.++.||++|+......+++..+||..+++.. ..+.|..++||
T Consensus 149 lvv~AAGN~g~~~-~~~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~G~~~~~~~~pdi~a~G~~~~~~~-~~~~~~~~sGT 226 (261)
T cd07493 149 LVVNSAGNEGSTQ-WKGIGAPADAENVLSVGAVDANGNKASFSSIGPTADGRLKPDVMALGTGIYVIN-GDGNITYANGT 226 (261)
T ss_pred EEEEECCCCCCCC-CCcccCcccCCceEEEEEeccCCCCCccCCcCCCCCCCcCCceEecCCCeEEEc-CCCcEEeeCcH
Confidence 9999999999752 234566788899999999999999999999999876555666678999998864 45668899999
Q ss_pred CchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 381 SAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 381 S~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
|||||+|||++|||++++|+|++.|||++|+.||+
T Consensus 227 S~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 227 SFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999985
No 19
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=4.4e-42 Score=347.47 Aligned_cols=247 Identities=24% Similarity=0.309 Sum_probs=193.2
Q ss_pred HHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCC------CCCCCCCCChHHHHHHHHhccCCCC
Q psy5372 149 PVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDIT------PRYEDPRNKHGTRCAGELVMKPNNS 222 (586)
Q Consensus 149 ~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~HGT~vAgiia~~~~n~ 222 (586)
++|+ .+++|+||+|+|||+|||.+||+|.++... .++....+..++. .....+..+|||||||||++..++.
T Consensus 1 ~aw~-~g~~G~gv~IaviDtGid~~Hp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgiia~~~~~~ 78 (273)
T cd07485 1 AAWE-FGTGGPGIIVAVVDTGVDGTHPDLQGNGDG-DGYDPAVNGYNFVPNVGDIDNDVSVGGGHGTHVAGTIAAVNNNG 78 (273)
T ss_pred Cccc-cccCCCCcEEEEEeCCCCCCChhhccCCCC-CCcccccCCcccccccCCcCCCCCCCCCCHHHHHHHHHcccCCC
Confidence 4799 999999999999999999999999987222 1232222222111 1111167899999999999986554
Q ss_pred Cccee-------eecCcEEEEEEccCC----CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHH
Q psy5372 223 KCGVG-------VCYGARVGGVKLLDG----ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGI 291 (586)
Q Consensus 223 ~g~~G-------VAp~a~l~~~~v~~~----~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~ 291 (586)
+..| +||+|+|+.+++++. ....++++++++.. ++++|||||||..... .....+.++++++.
T Consensus 79 -~~~g~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~-~g~~Vin~S~g~~~~~----~~~~~~~~a~~~~~ 152 (273)
T cd07485 79 -GGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAAD-NGAVILQNSWGGTGGG----IYSPLLKDAFDYFI 152 (273)
T ss_pred -cceeccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHH-cCCcEEEecCCCCCcc----ccCHHHHHHHHHHH
Confidence 3444 999999999999875 36778899999988 7999999999975421 12335778888887
Q ss_pred Hhc--cCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCC-ceEEec
Q psy5372 292 REG--RQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPV-KIITTD 368 (586)
Q Consensus 292 ~~~--~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~-~i~st~ 368 (586)
+.. +..+|+++|+||||++.... . .|+..+++|+||+++..+.++.||++|+.+++.+ ||. .++++.
T Consensus 153 ~~~~~~~~~g~lvv~AaGN~g~~~~--~--~pa~~~~vi~V~a~~~~~~~~~~S~~g~~~~i~a------pG~~~i~~~~ 222 (273)
T cd07485 153 ENAGGSPLDGGIVVFSAGNSYTDEH--R--FPAAYPGVIAVAALDTNDNKASFSNYGRWVDIAA------PGVGTILSTV 222 (273)
T ss_pred HhcccccCCCeEEEEecCCCCCCCC--C--CcccCCCeEEEEeccCCCCcCccccCCCceEEEe------CCCCcccccc
Confidence 742 12249999999999987532 2 2778899999999999999999999999887754 666 666664
Q ss_pred CC-----CCeeeccCCCCchHHHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q psy5372 369 VH-----NTCTCEHSGTSAAAPIAAGVLALALEANPN-MTWRDCQHILAWT 413 (586)
Q Consensus 369 ~~-----~~~~~~~~GTS~AaP~VAG~aALl~~~~p~-lt~~~v~~~L~~t 413 (586)
+. ...|..++|||||||+|||++|||++++|+ |+++|||++|++|
T Consensus 223 ~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 223 PKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 43 356889999999999999999999999999 9999999999876
No 20
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.2e-42 Score=341.06 Aligned_cols=230 Identities=33% Similarity=0.420 Sum_probs=189.3
Q ss_pred cEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEcc
Q psy5372 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLL 240 (586)
Q Consensus 161 v~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~ 240 (586)
|+|||||+||+.+||+|+++.....++++...+..+. +..+|||||||||++..++..++.||||+|+|+++|++
T Consensus 1 V~VaviDsGi~~~hp~l~~~~~~~~~~~~~~~~~~~~-----~~~~HGT~vAgiiag~~~~~~~~~Gvap~a~i~~~~~~ 75 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKPKLVPGWNFVSNNDPTS-----DIDGHGTACAGVAAAVGNNGLGVAGVAPGAKLMPVRIA 75 (242)
T ss_pred CEEEEecCCCCCCChhhccCcCccCCccccCCCCCCC-----CCCCCHHHHHHHHHhccCCCceeEeECCCCEEEEEEEE
Confidence 7999999999999999999544444566655443211 78999999999999998778899999999999999998
Q ss_pred CCC----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCC
Q psy5372 241 DGE----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNC 316 (586)
Q Consensus 241 ~~~----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~ 316 (586)
+.. .+++.++++++.. ++++|||||||...... ....++++++++++.++|++||+||||++.....
T Consensus 76 ~~~~~~~~~~~~~ai~~a~~-~~~~Vin~S~g~~~~~~-------~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~- 146 (242)
T cd07498 76 DSLGYAYWSDIAQAITWAAD-NGADVISNSWGGSDSTE-------SISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSS- 146 (242)
T ss_pred CCCCCccHHHHHHHHHHHHH-CCCeEEEeccCCCCCCc-------hHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCC-
Confidence 643 6778889999886 88999999999754322 3456666666666666899999999999985322
Q ss_pred CCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEec--------CCCCeeeccCCCCchHHHHH
Q psy5372 317 AADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTD--------VHNTCTCEHSGTSAAAPIAA 388 (586)
Q Consensus 317 ~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~--------~~~~~~~~~~GTS~AaP~VA 388 (586)
.|+..+++|+|||++..+.++.||++|+.+++.+ ||..+.+.. ..+.+|..++|||||||+||
T Consensus 147 ---~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~a------pG~~~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~va 217 (242)
T cd07498 147 ---GYAANPSVIAVAATDSNDARASYSNYGNYVDLVA------PGVGIWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAA 217 (242)
T ss_pred ---CCcCCCCeEEEEEeCCCCCccCcCCCCCCeEEEe------CcCCcccCCccccccccCCCCceEeeCcHHHHHHHHH
Confidence 5778899999999999999999999999988855 555554441 23566888999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhc
Q psy5372 389 GVLALALEANPNMTWRDCQHILAWT 413 (586)
Q Consensus 389 G~aALl~~~~p~lt~~~v~~~L~~t 413 (586)
|++|||++++|+|+++|||++|++|
T Consensus 218 G~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 218 GVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999875
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.6e-42 Score=347.50 Aligned_cols=232 Identities=28% Similarity=0.334 Sum_probs=187.6
Q ss_pred CcEEEEEecCccCCCcccccCCCCCCcccccCCCCC----------CCC----------------C-CCCCCCChHHHHH
Q psy5372 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWD----------ITP----------------R-YEDPRNKHGTRCA 212 (586)
Q Consensus 160 gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~----------~~~----------------~-~~~d~~~HGT~vA 212 (586)
||+||||||||+.+||+|.+++.. +|+|..+... +.. . ...+..+||||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~--g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~vA 78 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP--GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTHVA 78 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc--CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHHHH
Confidence 799999999999999999998754 4666543210 100 0 0014678999999
Q ss_pred HHHhccCCCCCcceeeecCcEEEEEEccCC---CchhHHHHHHhhhc---------CCCCeEEEcCCCCCCCCCCCCCch
Q psy5372 213 GELVMKPNNSKCGVGVCYGARVGGVKLLDG---ETTDLIESKALQFG---------LDKVDIYSGSWGPPDDGKSMDGPG 280 (586)
Q Consensus 213 giia~~~~n~~g~~GVAp~a~l~~~~v~~~---~~~~~~~a~~~~~~---------~~~~~Vin~S~G~~~~~~~~~~~~ 280 (586)
|||++..+|+.++.||||+|+|+++|+++. ..++++++++|+.. .++++|||||||..... .
T Consensus 79 giiaa~~~~~~~~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~------~ 152 (285)
T cd07496 79 GTIAAVTNNGVGVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC------S 152 (285)
T ss_pred HHHhCcCCCCCCceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCC------C
Confidence 999999888999999999999999999864 36788999998863 36799999999985421 3
Q ss_pred HHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCC
Q psy5372 281 KLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISD 360 (586)
Q Consensus 281 ~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~ap 360 (586)
..+.++++++.. +|++||+||||++... ....|+..+++|+|||++..+.++.||++|+.+++.+ |
T Consensus 153 ~~~~~ai~~a~~-----~GvivV~AAGN~g~~~---~~~~Pa~~~~vi~Vga~~~~~~~~~~S~~g~~vdi~a------p 218 (285)
T cd07496 153 ATMQNAINDVRA-----RGVLVVVAAGNEGSSA---SVDAPANCRGVIAVGATDLRGQRASYSNYGPAVDVSA------P 218 (285)
T ss_pred HHHHHHHHHHHH-----CCCEEEEECCCCCCCC---CccCCCCCCceEEEeccCCCCCcccccCCCCCCCEEe------C
Confidence 367788888876 6999999999998752 3456788899999999999999999999999887754 5
Q ss_pred CCceEEecC--------------CCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q psy5372 361 PVKIITTDV--------------HNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWT 413 (586)
Q Consensus 361 g~~i~st~~--------------~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~t 413 (586)
|..|.++.. ....|..++|||||||+|||++|||++++|+|+++||+++|+.|
T Consensus 219 G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 219 GGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred CCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 655554432 13457889999999999999999999999999999999999875
No 22
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.1e-41 Score=341.07 Aligned_cols=243 Identities=24% Similarity=0.292 Sum_probs=197.8
Q ss_pred CCCcEEEEEecCccCCCcccccCCCCCCcccccC-CCCCCCCCCCCCCCChHHHHHHHHhccCCC-CCcceeeecCcEEE
Q psy5372 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNA-EKWDITPRYEDPRNKHGTRCAGELVMKPNN-SKCGVGVCYGARVG 235 (586)
Q Consensus 158 G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~HGT~vAgiia~~~~n-~~g~~GVAp~a~l~ 235 (586)
|+||+|+|||+||+.+||+|.+++.....+.... ..... .|..+|||||||+|++..++ ..+..||||+|+|+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~~~~~~~~~~~~~~~-----~d~~~HGT~vAgiiag~~~~~~~~~~Giap~a~i~ 75 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGRTTP-----YDDNGHGTHVAGIIAGSGRASNGKYKGVAPGANLV 75 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccccccccccccCCCCC-----CCCCCchHHHHHHHhcCCcccCCceEEECCCCeEE
Confidence 8999999999999999999998765533222111 11111 16789999999999999766 56789999999999
Q ss_pred EEEccCC----CchhHHHHHHhhhcCC---CCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCC
Q psy5372 236 GVKLLDG----ETTDLIESKALQFGLD---KVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGN 308 (586)
Q Consensus 236 ~~~v~~~----~~~~~~~a~~~~~~~~---~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN 308 (586)
.+|+++. ..++++++++|+.... +++|||||||..... ......+.++++++.+ +|++||+||||
T Consensus 76 ~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~---~~~~~~~~~~~~~~~~-----~gilvv~aaGN 147 (264)
T cd07487 76 GVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP---SYGEDPLCQAVERLWD-----AGIVVVVAAGN 147 (264)
T ss_pred EEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCC---CCCCCHHHHHHHHHHh-----CCCEEEEeCCC
Confidence 9999874 3678889999988742 899999999986532 1122356777887776 69999999999
Q ss_pred CCCCCCCCCCCCCCCCceEEEEeeecCCCC----CCCCCCCCCcceeccccCCCCCCCceEEe--------cCCCCeeec
Q psy5372 309 GKYNGDNCAADGYINSIYTIAIASAREDGQ----SPFYSEECTGLIATAYSGGISDPVKIITT--------DVHNTCTCE 376 (586)
Q Consensus 309 ~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~----~a~~S~~G~~~~~~~~~~~~apg~~i~st--------~~~~~~~~~ 376 (586)
++.... .+..|+..+++|+|||++.++. ++.||++|+.......++..+||..+++. ......+..
T Consensus 148 ~~~~~~--~~~~p~~~~~vi~Vga~~~~~~~~~~~~~~s~~G~~~~~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~ 225 (264)
T cd07487 148 SGPGPG--TITSPGNSPKVITVGAVDDNGPHDDGISYFSSRGPTGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFE 225 (264)
T ss_pred CCCCCC--ccCCcccCCCceEEEeccCCCCCCccccccccCCCCCCCCcCCCEEccccceEeccccccccCCCCCCceEe
Confidence 987532 3456778899999999999988 79999999987766667778899999986 334567889
Q ss_pred cCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 377 HSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 377 ~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
++|||||||+|||++|||++++|.|+++|||++|++||+
T Consensus 226 ~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 226 MSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999985
No 23
>KOG1153|consensus
Probab=100.00 E-value=8.5e-42 Score=341.47 Aligned_cols=342 Identities=20% Similarity=0.221 Sum_probs=258.7
Q ss_pred cceeeeeEEEEEcCCcchHH-----HHHH-HhCCeEe-----------------eecCCCCCeEEEEEcCCCCCCCCccc
Q psy5372 8 AEHFLNQWVVHISGDPDIAN-----QVAQ-DLGFHYN-----------------GIINGLDNHYLFSKKQHNHKTPEETT 64 (586)
Q Consensus 8 ~~~~~~~~iV~~~~~~~~~~-----~~~~-~~g~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (586)
.+.++++|||.|++...+.+ +..+ -++.++. ..+..+.+.|.+.-...+++....+.
T Consensus 76 ~~~~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~ 155 (501)
T KOG1153|consen 76 EEALPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTG 155 (501)
T ss_pred hcccccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccc
Confidence 36789999999997653321 1111 1122111 11122334444444445556667788
Q ss_pred cccccccCCCceeEEeecchhhccccchhhHHHHHHhhhhhhhcchhhccccCCCCCCCCCCCCCcccccCCCCCCCCCC
Q psy5372 65 FETVGLLNDARVIWTQQQFAKHLRKRAEIQELRRQLRAMSQIYRKETEVSKYEGMFTDEWWPMQWYEQDYRLSNSSKKLD 144 (586)
Q Consensus 65 ~~~~~l~~~p~V~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~qw~l~~~~~~~~~~~~~ 144 (586)
+.+..++++|-+..+|++..++..+...+.. | ++-| |+|.+.+..... ..+
T Consensus 156 ~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~---Q--------------------~~AP-----wgLaRvsh~~~~-~y~ 206 (501)
T KOG1153|consen 156 ESVCSIRSDPLIKAVEKDSVVEVDKISTIML---Q--------------------NNAP-----WGLARVSHREKL-KYD 206 (501)
T ss_pred ceeeeeccCcceeecccccccccccccceec---c--------------------cCCc-----hhhhhhcccccc-ccc
Confidence 8999999999999999999998876432111 1 3444 999888764322 122
Q ss_pred CCchHHHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCc
Q psy5372 145 LNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKC 224 (586)
Q Consensus 145 i~~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g 224 (586)
--....++ -..|+||+.+|+||||+..||||.++... +.++..++.+- |++||||||||+|+++.
T Consensus 207 ~~~~Y~Y~--~~aG~gvtaYv~DTGVni~H~dFegRa~w--Ga~i~~~~~~~------D~nGHGTH~AG~I~sKt----- 271 (501)
T KOG1153|consen 207 SWGNYVYE--IDAGKGVTAYVLDTGVNIEHPDFEGRAIW--GATIPPKDGDE------DCNGHGTHVAGLIGSKT----- 271 (501)
T ss_pred chheEEee--cccCCCeEEEEecccccccccccccceec--ccccCCCCccc------ccCCCcceeeeeeeccc-----
Confidence 22334455 33799999999999999999999987433 44444333221 89999999999999985
Q ss_pred ceeeecCcEEEEEEccCCC----chhHHHHHHhhhcC--------CCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHH
Q psy5372 225 GVGVCYGARVGGVKLLDGE----TTDLIESKALQFGL--------DKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIR 292 (586)
Q Consensus 225 ~~GVAp~a~l~~~~v~~~~----~~~~~~a~~~~~~~--------~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~ 292 (586)
.|||.+++|+.+||++++ .++++.++++..+. .+..|.|||+|+.. +..+.-|++.|++
T Consensus 272 -~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~--------S~aLn~AV~~A~~ 342 (501)
T KOG1153|consen 272 -FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR--------SAALNMAVNAASE 342 (501)
T ss_pred -cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc--------cHHHHHHHHHHhh
Confidence 899999999999999753 89999999999876 46889999999853 2367888898888
Q ss_pred hccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCC-
Q psy5372 293 EGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHN- 371 (586)
Q Consensus 293 ~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~- 371 (586)
.|++|++||||+.. |.|+ .+|+++..+|+|||++..+.++.|||+|+++++. |||..|+|++..+
T Consensus 343 -----~Gi~fa~AAGNe~e--DAC~-~SPass~~aITVGAst~~D~iA~FSN~G~CVdiF------APGv~IlSs~iGs~ 408 (501)
T KOG1153|consen 343 -----RGIHFAVAAGNEHE--DACN-SSPASSKKAITVGASTKNDTIAFFSNWGKCVDIF------APGVNILSSWIGSN 408 (501)
T ss_pred -----cCeEEEEcCCCcch--hhhc-cCcccccccEEecccccccchhhhcCccceeeee------cCchhhhhhhhcCc
Confidence 69999999999988 5676 4678899999999999999999999999999984 4999999997653
Q ss_pred CeeeccCCCCchHHHHHHHHHHHHhhCC---------CCCHHHHHHHHHhcCCc
Q psy5372 372 TCTCEHSGTSAAAPIAAGVLALALEANP---------NMTWRDCQHILAWTSER 416 (586)
Q Consensus 372 ~~~~~~~GTS~AaP~VAG~aALl~~~~p---------~lt~~~v~~~L~~tA~~ 416 (586)
......+|||||+|||||++|..++..| ..++.+++..++.-..+
T Consensus 409 ~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 409 NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 3567889999999999999999999988 34888888887766654
No 24
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.8e-40 Score=331.06 Aligned_cols=237 Identities=21% Similarity=0.241 Sum_probs=184.7
Q ss_pred CcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEc
Q psy5372 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKL 239 (586)
Q Consensus 160 gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v 239 (586)
||+|||||+||+.+||+|.+++.....++ .+...+.+. ..+..+|||||||+|++..++ .+..||||+++|+++|+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~~~~~~~~--~~~~~~~~~-~~d~~~HGT~vAgiia~~~~~-~~~~GvAp~a~i~~~~v 76 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRVAQWADFD--ENRRISATE-VFDAGGHGTHVSGTIGGGGAK-GVYIGVAPEADLLHGKV 76 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcccCCceecc--CCCCCCCCC-CCCCCCcHHHHHHHHhcCCCC-CCEEEECCCCEEEEEEE
Confidence 79999999999999999998775533332 211111111 117789999999999998664 45689999999999999
Q ss_pred cCCC---chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCC
Q psy5372 240 LDGE---TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNC 316 (586)
Q Consensus 240 ~~~~---~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~ 316 (586)
++.. ..+++++++|+.. ++++|||||||..... ...+.++++...+. +|++||+||||++..
T Consensus 77 ~~~~~~~~~~~~~ai~~a~~-~~~~Vin~S~g~~~~~------~~~~~~~~~~~~~~----~g~lvV~aAGN~g~~---- 141 (254)
T cd07490 77 LDDGGGSLSQIIAGMEWAVE-KDADVVSMSLGGTYYS------EDPLEEAVEALSNQ----TGALFVVSAGNEGHG---- 141 (254)
T ss_pred ecCCCCcHHHHHHHHHHHHh-CCCCEEEECCCcCCCC------CcHHHHHHHHHHHc----CCCEEEEeCCCCCCC----
Confidence 8744 7888999999988 8999999999986432 12345555544442 699999999999875
Q ss_pred CCCCCCCCceEEEEeeecCCCCCCCCCCCCCccee-----------ccccCCCCCCCceEEe---cCCCCeeeccCCCCc
Q psy5372 317 AADGYINSIYTIAIASAREDGQSPFYSEECTGLIA-----------TAYSGGISDPVKIITT---DVHNTCTCEHSGTSA 382 (586)
Q Consensus 317 ~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~-----------~~~~~~~apg~~i~st---~~~~~~~~~~~GTS~ 382 (586)
....|+..+++|+|||++..+.+.+|+++|..... ...++..+||..++++ ......|..++||||
T Consensus 142 ~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~~apG~~i~~~~~~~~~~~~~~~~~GTS~ 221 (254)
T cd07490 142 TSGSPGSAYAALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQYTRLSGTSM 221 (254)
T ss_pred CCCCCccCCceeEEecccccCCccCccCCcccccccccCCCCCccCCcCceEEeccCCeEccccCCCCCCCeeecccHHH
Confidence 33557788999999999999999999988832211 1122335688888873 134566889999999
Q ss_pred hHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 383 AAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 383 AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
|||+|||++|||++++|+|+++|||++|+.||+
T Consensus 222 AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999984
No 25
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.8e-40 Score=329.73 Aligned_cols=232 Identities=28% Similarity=0.369 Sum_probs=188.8
Q ss_pred CCcEEEEEecCccCCCcccccCCCCC--------------------CcccccCCCCCCCCCCCCCCCChHHHHHHHHhcc
Q psy5372 159 AGVNIIIIDDGMEYTHEDIKDSFAPE--------------------LSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMK 218 (586)
Q Consensus 159 ~gv~VaViDtGid~~Hpdl~~~~~~~--------------------~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~ 218 (586)
+||+|+|||+||+++||+|.+++... .+|++.....++ .|..+|||||||+|++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~HGT~va~ii~~~ 76 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDP-----MDDNGHGTHVAGIIGAV 76 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccccccCcccccccCcccCCCCcccCCCcccccCCCCCC-----CCCCCcHHHHHHHHHCc
Confidence 68999999999999999999865321 112222111111 17789999999999999
Q ss_pred CCCCCcceeeecCcEEEEEEccCCC----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhc
Q psy5372 219 PNNSKCGVGVCYGARVGGVKLLDGE----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREG 294 (586)
Q Consensus 219 ~~n~~g~~GVAp~a~l~~~~v~~~~----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~ 294 (586)
.+++.++.||||+|+|+.+|+++.. ..+++++++++.. ++++|||+|||.... ...+.++++++..
T Consensus 77 ~~~~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~-~~~~vin~S~G~~~~-------~~~~~~~~~~~~~-- 146 (259)
T cd07473 77 GNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVD-MGAKIINNSWGGGGP-------SQALRDAIARAID-- 146 (259)
T ss_pred CCCCCceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHH-CCCeEEEeCCCCCCC-------CHHHHHHHHHHHh--
Confidence 8888889999999999999998643 6788999999988 899999999998643 3467888888887
Q ss_pred cCCCCcEEEEecCCCCCCCCC-CCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcc-eeccccCCCCCCCceEEecCCCC
Q psy5372 295 RQGKGVLFVFAAGNGKYNGDN-CAADGYINSIYTIAIASAREDGQSPFYSEECTGL-IATAYSGGISDPVKIITTDVHNT 372 (586)
Q Consensus 295 ~~~~Gi~~V~AAGN~g~~~~~-~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~-~~~~~~~~~apg~~i~st~~~~~ 372 (586)
+|++||+||||++..... ..++.....+++|+||+++..+.+..||++|+.. ++ .+||..++++. ...
T Consensus 147 ---~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~------~apG~~~~~~~-~~~ 216 (259)
T cd07473 147 ---AGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALASFSNYGKKTVDL------AAPGVDILSTS-PGG 216 (259)
T ss_pred ---CCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcCcccCCCCCCcEE------EeccCCeEecc-CCC
Confidence 599999999999875331 1222222457899999999999999999999753 33 45888888874 566
Q ss_pred eeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 373 CTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 373 ~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
.|..++|||||||+|||++|||++++|.|+++|||++|++||+
T Consensus 217 ~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7899999999999999999999999999999999999999985
No 26
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.4e-40 Score=334.45 Aligned_cols=246 Identities=26% Similarity=0.276 Sum_probs=179.2
Q ss_pred CCCCchHHHHcCCCCCCCcEEEEEecCccCCCcccccC-CCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCC
Q psy5372 143 LDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDS-FAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNN 221 (586)
Q Consensus 143 ~~i~~~~aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~-~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n 221 (586)
..|++.++|+ ++++|+||+||||||||+..|| |..+ +.. ...+..+..++. .|..|||||||++|
T Consensus 6 ~~l~~~~~~~-~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~~--~~~~~~~~~~~~----~D~~gHGT~vag~i------ 71 (298)
T cd07494 6 ALLNATRVHQ-RGITGRGVRVAMVDTGFYAHPF-FESRGYQV--RVVLAPGATDPA----CDENGHGTGESANL------ 71 (298)
T ss_pred hhcChhHHHh-cCCCCCCcEEEEEeCCCcCCch-hhcCCccc--eeecCCCCCCCC----CCCCCcchheeece------
Confidence 3578999999 9999999999999999999998 5442 211 111111111111 17789999999854
Q ss_pred CCcceeeecCcEEEEEEccCCCchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCC------CCCchHHHHHHHHHHHHhcc
Q psy5372 222 SKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKS------MDGPGKLSKAAIDRGIREGR 295 (586)
Q Consensus 222 ~~g~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~------~~~~~~~~~~a~~~a~~~~~ 295 (586)
.||||+|+|+.+|+++....+++++++|++. ++++|||||||....... .......+.++++++..
T Consensus 72 ----~GvAP~a~i~~vkv~~~~~~~~~~ai~~a~~-~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~--- 143 (298)
T cd07494 72 ----FAIAPGAQFIGVKLGGPDLVNSVGAFKKAIS-LSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVA--- 143 (298)
T ss_pred ----eEeCCCCeEEEEEccCCCcHHHHHHHHHHHh-cCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHH---
Confidence 6899999999999998888889999999988 899999999998542211 11122345666666665
Q ss_pred CCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeec--CCCCC--CCCC-CCCCcc-------eecccc--------
Q psy5372 296 QGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAR--EDGQS--PFYS-EECTGL-------IATAYS-------- 355 (586)
Q Consensus 296 ~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~--~~~~~--a~~S-~~G~~~-------~~~~~~-------- 355 (586)
+|++||+||||++. ..|+..++||+|||++ .++.. +.|+ ++.+.+ +++...
T Consensus 144 --~Gi~vVaAAGN~~~-------~~Pa~~p~viaVga~~~~~~g~~~~~~~~~~~~s~~~~g~~~pd~~~~~g~~~~~~~ 214 (298)
T cd07494 144 --RGIVVVFSAGNGGW-------SFPAQHPEVIAAGGVFVDEDGARRASSYASGFRSKIYPGRQVPDVCGLVGMLPHAAY 214 (298)
T ss_pred --CCcEEEEeCCCCCC-------CcCCCCCCEEEEEeEeccCCCcccccccccCcccccCCCCccCccccccCcCCcccc
Confidence 79999999999874 3478899999999984 34432 2221 122111 111110
Q ss_pred -C-CCCCCCceEEec-------CCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCcCCC
Q psy5372 356 -G-GISDPVKIITTD-------VHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSEREPL 419 (586)
Q Consensus 356 -~-~~apg~~i~st~-------~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~ 419 (586)
. ..+||..|.+.. ..+..|..++|||||||||||++|||++++|.|+++|||++|+.||++...
T Consensus 215 ~~~~~APG~~i~~~~~~~~~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 215 LMLPVPPGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred cccccCCCcceeccccCCCCCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 0 036888775321 235668899999999999999999999999999999999999999997754
No 27
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=1.1e-39 Score=321.68 Aligned_cols=225 Identities=29% Similarity=0.377 Sum_probs=187.5
Q ss_pred CcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEc
Q psy5372 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKL 239 (586)
Q Consensus 160 gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v 239 (586)
||+|+|||+||+.+||+|++++.. .+++.....+ .. .+..+|||||||+|++.. +..++.||||+|+|+.+|+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~~~~--~~~~~~~~~~---~~-~~~~~HGT~vA~ii~~~~-~~~~~~giap~a~i~~~~~ 73 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLNIVG--GANFTGDDNN---DY-QDGNGHGTHVAGIIAALD-NGVGVVGVAPEADLYAVKV 73 (229)
T ss_pred CCEEEEEcCCCCCCChhHhccccC--cccccCCCCC---CC-CCCCCCHHHHHHHHhccc-CCCccEeeCCCCEEEEEEE
Confidence 799999999999999999987655 3455544321 11 178899999999999984 4448899999999999999
Q ss_pred cCCC----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCC
Q psy5372 240 LDGE----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDN 315 (586)
Q Consensus 240 ~~~~----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~ 315 (586)
++.. ..+++.+++++.. ++++|||||||.... ...+.++++++.. +|+++|+||||++.....
T Consensus 74 ~~~~~~~~~~~l~~ai~~a~~-~~~~Vin~S~g~~~~-------~~~~~~~~~~a~~-----~giliv~aaGN~~~~~~~ 140 (229)
T cd07477 74 LNDDGSGTYSDIIAGIEWAIE-NGMDIINMSLGGPSD-------SPALREAIKKAYA-----AGILVVAAAGNSGNGDSS 140 (229)
T ss_pred ECCCCCcCHHHHHHHHHHHHH-CCCCEEEECCccCCC-------CHHHHHHHHHHHH-----CCCEEEEecCCCCCCCCC
Confidence 8643 5788999999988 789999999997542 2367788888777 699999999999885332
Q ss_pred CCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHH
Q psy5372 316 CAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALAL 395 (586)
Q Consensus 316 ~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~ 395 (586)
. ..|+..+++|+||+++.++.+..||++|+.+++. +||..++++. ....+..++|||||||+|||++|||+
T Consensus 141 ~--~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~~~~------apg~~i~~~~-~~~~~~~~~GTS~Aap~vag~~All~ 211 (229)
T cd07477 141 Y--DYPAKYPSVIAVGAVDSNNNRASFSSTGPEVELA------APGVDILSTY-PNNDYAYLSGTSMATPHVAGVAALVW 211 (229)
T ss_pred c--cCCCCCCCEEEEEeecCCCCcCCccCCCCCceEE------eCCCCeEEec-CCCCEEEEccHHHHHHHHHHHHHHHH
Confidence 2 2577889999999999999999999999988774 4888898885 44667889999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhc
Q psy5372 396 EANPNMTWRDCQHILAWT 413 (586)
Q Consensus 396 ~~~p~lt~~~v~~~L~~t 413 (586)
+++|+|++++||++|+.|
T Consensus 212 ~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 212 SKRPELTNAQVRQALNKT 229 (229)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999875
No 28
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7e-40 Score=336.94 Aligned_cols=233 Identities=21% Similarity=0.145 Sum_probs=173.8
Q ss_pred HHHcCCCCCCCcEEEEEecCccCCCcccccCCCCCCc-------------------------ccccCCCCC------CCC
Q psy5372 150 VYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELS-------------------------YNFNAEKWD------ITP 198 (586)
Q Consensus 150 aw~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~-------------------------~~~~~~~~~------~~~ 198 (586)
+|. .+++|+||+|||||||||++||+|.+....... +++.++..+ +..
T Consensus 22 ~~~-~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~g~~~~~~~~~~~~~~~~~~~ 100 (307)
T cd04852 22 LLG-AANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGE 100 (307)
T ss_pred ccc-ccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEEEEEEcccchhhccCcccccC
Confidence 344 699999999999999999999999764221110 111111100 000
Q ss_pred CCCC-CCCChHHHHHHHHhccCCCC--------CcceeeecCcEEEEEEccCC----CchhHHHHHHhhhcCCCCeEEEc
Q psy5372 199 RYED-PRNKHGTRCAGELVMKPNNS--------KCGVGVCYGARVGGVKLLDG----ETTDLIESKALQFGLDKVDIYSG 265 (586)
Q Consensus 199 ~~~~-d~~~HGT~vAgiia~~~~n~--------~g~~GVAp~a~l~~~~v~~~----~~~~~~~a~~~~~~~~~~~Vin~ 265 (586)
...+ |..+|||||||||+|...++ ..+.||||+|+|+++|+++. ..++++++++++.. ++++||||
T Consensus 101 ~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~-~g~~Vin~ 179 (307)
T cd04852 101 YRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIA-DGVDVISY 179 (307)
T ss_pred CCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHH-cCCCEEEe
Confidence 1111 77899999999999975532 34689999999999999875 37788999999987 79999999
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCC
Q psy5372 266 SWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEE 345 (586)
Q Consensus 266 S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~ 345 (586)
|||.... ......+..++.++.. +|+++|+||||+|.. ....+...+++|+||+++
T Consensus 180 S~G~~~~----~~~~~~~~~~~~~a~~-----~gilvV~aAGN~g~~----~~~~~~~~~~vi~Vga~~----------- 235 (307)
T cd04852 180 SIGGGSP----DPYEDPIAIAFLHAVE-----AGIFVAASAGNSGPG----ASTVPNVAPWVTTVAAST----------- 235 (307)
T ss_pred CCCCCCC----CcccCHHHHHHHHHHh-----CCCEEEEECCCCCCC----CCcccCCCCCeEEEEecc-----------
Confidence 9998642 1112245566666654 799999999999853 234566788999999998
Q ss_pred CCcceeccccCCCCCCCceEEecC---------CCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 346 CTGLIATAYSGGISDPVKIITTDV---------HNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 346 G~~~~~~~~~~~~apg~~i~st~~---------~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
..++..+||..|++... ....|..++|||||||+|||++|||+|++|+++++|||++|++||+
T Consensus 236 -------~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 -------LKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred -------CccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 11222457777776643 2356888999999999999999999999999999999999999985
No 29
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-40 Score=334.06 Aligned_cols=241 Identities=18% Similarity=0.139 Sum_probs=183.7
Q ss_pred EEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccC
Q psy5372 162 NIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD 241 (586)
Q Consensus 162 ~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~ 241 (586)
+||||||||+.+||+|++++.....+...... + .|..+|||||||+|++..++..+..|+||+|+|+.+|+++
T Consensus 2 ~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~--~-----~d~~gHGT~vAgiia~~~~~~~~~~gvap~~~l~~~kv~~ 74 (291)
T cd04847 2 IVCVLDSGINRGHPLLAPALAEDDLDSDEPGW--T-----ADDLGHGTAVAGLALYGDLTLPGNGLPRPGCRLESVRVLP 74 (291)
T ss_pred EEEEecCCCCCCChhhhhhhccccccccCCCC--c-----CCCCCChHHHHHHHHcCcccCCCCCCcccceEEEEEEEcC
Confidence 79999999999999999987654333222111 1 1789999999999998766556789999999999999986
Q ss_pred CC--------chhHHHHHHhhhcCC--CCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCC
Q psy5372 242 GE--------TTDLIESKALQFGLD--KVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKY 311 (586)
Q Consensus 242 ~~--------~~~~~~a~~~~~~~~--~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~ 311 (586)
.. ..++++++++++... +++|||||||...... ......+..++++... .+|++||+||||++.
T Consensus 75 ~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~--~~~~~~~~~~id~~a~----~~gvlvV~aAGN~g~ 148 (291)
T cd04847 75 PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPID--DGRPSSWAAALDQLAA----EYDVLFVVSAGNLGD 148 (291)
T ss_pred CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCcc--CCCCCcHHHHHHHHhc----cCCeEEEEECCCCCc
Confidence 42 456788999988643 3699999999864322 1111234555655433 279999999999998
Q ss_pred CCCCCCC--------CCCCCCceEEEEeeecCCCCCCCCCC--------------CCCcceeccccCCCCCCCceEEec-
Q psy5372 312 NGDNCAA--------DGYINSIYTIAIASAREDGQSPFYSE--------------ECTGLIATAYSGGISDPVKIITTD- 368 (586)
Q Consensus 312 ~~~~~~~--------~~~~~~~~vi~Vga~~~~~~~a~~S~--------------~G~~~~~~~~~~~~apg~~i~st~- 368 (586)
....... ..|+.++++|+|||++..+..+.||+ +||......+++..+||..+.+..
T Consensus 149 ~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~~~~~KPDl~apG~~i~~~~~ 228 (291)
T cd04847 149 DDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLAYDPS 228 (291)
T ss_pred cccccccccccccccCCHHHhhhheeeeeeecCccCCCcccccccccccCCCccccCCCCCCCcCCcEEeeCCceeecCC
Confidence 6443221 23677889999999999887766544 455555556677788998887642
Q ss_pred ----------------CCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 369 ----------------VHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 369 ----------------~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
..+..|..++|||||||+|||++|||++++|++++.+||++|++||+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 229 GNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 13456889999999999999999999999999999999999999984
No 30
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=7.8e-40 Score=334.81 Aligned_cols=250 Identities=23% Similarity=0.246 Sum_probs=190.6
Q ss_pred CCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCC---CCCCCCCCCCCChHHHHHHHHhccCCCCC---ccee
Q psy5372 154 LNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKW---DITPRYEDPRNKHGTRCAGELVMKPNNSK---CGVG 227 (586)
Q Consensus 154 ~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~HGT~vAgiia~~~~n~~---g~~G 227 (586)
++++|+||+|||||+||+.+||+|.+... .+.++..... .+......|..+|||||||+|++..++.. ++.|
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~~~~~~~~~~G 79 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF--NKTNLFHRKIVRYDSLSDTKDDVDGHGTHVAGIIAGKGNDSSSISLYKG 79 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc--CcCccCcccEEEeeccCCCCCCCCCCcchhheeeccCCcCCCccccccc
Confidence 68999999999999999999999976321 0111111100 00111111678999999999999987775 7899
Q ss_pred eecCcEEEEEEccCCC-----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEE
Q psy5372 228 VCYGARVGGVKLLDGE-----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLF 302 (586)
Q Consensus 228 VAp~a~l~~~~v~~~~-----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~ 302 (586)
|||+|+|+.+++++.. ...+..+++++.. .+++|||||||..... .......+++++... .+|+++
T Consensus 80 vAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vin~S~G~~~~~-----~~~~~~~~~~~~~~~---~~g~lv 150 (293)
T cd04842 80 VAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYD-AGARISSNSWGSPVNN-----GYTLLARAYDQFAYN---NPDILF 150 (293)
T ss_pred ccccCeEEEEEeeccCccccCCccHHHHHHHHHH-hCCEEEeccCCCCCcc-----ccchHHHHHHHHHHh---CCCeEE
Confidence 9999999999998743 4556677777766 6799999999986532 112445566665543 169999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCceEEEEeeecCCCC---------------CCCCCCCCCcceeccccCCCCCCCceEEe
Q psy5372 303 VFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQ---------------SPFYSEECTGLIATAYSGGISDPVKIITT 367 (586)
Q Consensus 303 V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~---------------~a~~S~~G~~~~~~~~~~~~apg~~i~st 367 (586)
|+||||++..... ....|+..+++|+|||++..+. ++.||++|+......+++..+||..++++
T Consensus 151 V~aAGN~g~~~~~-~~~~pa~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~~~~~S~~G~~~~~~~~pdv~ApG~~i~~~ 229 (293)
T cd04842 151 VFSAGNDGNDGSN-TIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTYDGRIKPDLVAPGTGILSA 229 (293)
T ss_pred EEeCCCCCCCCCc-cccCcccccceEEEeeccCCCcccccccccccCCCCccccccCcCCCCCCCcCCCEECCCCCeEec
Confidence 9999999986432 2456788899999999998877 88999999987666666677899999888
Q ss_pred c--------CCCCeeeccCCCCchHHHHHHHHHHHHhhCC--------CCCHHHHHHHHHhcCC
Q psy5372 368 D--------VHNTCTCEHSGTSAAAPIAAGVLALALEANP--------NMTWRDCQHILAWTSE 415 (586)
Q Consensus 368 ~--------~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p--------~lt~~~v~~~L~~tA~ 415 (586)
. .....|..++|||||||+|||++|||+|++| .+++.++|++|++||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 230 RSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred cCCCCCCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 4 2345688999999999999999999999855 5555699999999985
No 31
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2e-39 Score=321.34 Aligned_cols=215 Identities=22% Similarity=0.255 Sum_probs=170.4
Q ss_pred CCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCC-CCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEE
Q psy5372 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWD-ITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGG 236 (586)
Q Consensus 158 G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~ 236 (586)
+++|+|||||+|||.+||||++++.....|....++.+ ..|.+. |..+|||||||||+ ||||+|+|++
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~i~~~~~~~~~~~~~~~~~~~~~-d~~gHGT~vAgiI~----------gvap~a~i~~ 70 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGKIIGGKSFSPYEGDGNKVSPYYV-SADGHGTAMARMIC----------RICPSAKLYV 70 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccccccCCCCCCCCCCcccCCCCCC-CCCCcHHHHHHHHH----------HHCCCCeEEE
Confidence 68999999999999999999998766444443322211 112121 68899999999996 5899999999
Q ss_pred EEccCCC----------chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEec
Q psy5372 237 VKLLDGE----------TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAA 306 (586)
Q Consensus 237 ~~v~~~~----------~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AA 306 (586)
+|+++.. ...+++|++|++. ++++|||||||...... .......+.+++++|.+ +|+++|+||
T Consensus 71 ~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~-~gadIIn~S~g~~~~~~-~~~~~~~l~~ai~~A~~-----~GilvvaaA 143 (247)
T cd07491 71 IKLEDRPSPDSNKRSITPQSAAKAIEAAVE-KKVDIISMSWTIKKPED-NDNDINELENAIKEALD-----RGILLFCSA 143 (247)
T ss_pred EEecccCCCCCcccccCHHHHHHHHHHHHH-CCCcEEEeeeecccccc-cccchHHHHHHHHHHHh-----CCeEEEEec
Confidence 9998642 3578999999998 79999999999754211 11223467788888877 799999999
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecC--CCCeeeccCCCCchH
Q psy5372 307 GNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDV--HNTCTCEHSGTSAAA 384 (586)
Q Consensus 307 GN~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~--~~~~~~~~~GTS~Aa 384 (586)
||++.... ..++.|+..++||+|||++.++.++.||++|+.+++ .+||.+|+++.. .++.|..++||||||
T Consensus 144 GN~g~~~~-~~~~~pa~~~~Vi~VgA~~~~g~~~~~S~~g~~vd~------~APG~~i~s~~~~~~~~~~~~~sGTS~At 216 (247)
T cd07491 144 SDQGAFTG-DTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDY------ILPGENVEARDRPPLSNSFVTHTGSSVAT 216 (247)
T ss_pred CCCCCcCC-CcccCcccCCCeEEEEeeCCCCCCccccCCCCcceE------EeCCCceecCCcCCCCCCeeeeccHHHHH
Confidence 99998643 234556778999999999999999999999998877 458999998864 256688999999999
Q ss_pred HHHHHHHHHHHhh
Q psy5372 385 PIAAGVLALALEA 397 (586)
Q Consensus 385 P~VAG~aALl~~~ 397 (586)
|+|||++||||+.
T Consensus 217 p~vaGvaAL~l~~ 229 (247)
T cd07491 217 ALAAGLAALILYC 229 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999985
No 32
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.2e-39 Score=330.35 Aligned_cols=242 Identities=23% Similarity=0.263 Sum_probs=170.1
Q ss_pred CCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcE
Q psy5372 154 LNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGAR 233 (586)
Q Consensus 154 ~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~ 233 (586)
.+++|+||+|+|||+||+.+||+|.++... ..++.+... + .|..+|||||||+|++..++ .+..||||+|+
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~~--~~~~~~~~~-~-----~d~~gHGT~VAgiiag~~~~-~~~~GvAp~a~ 73 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDIT--TKSFVGGED-V-----QDGHGHGTHCAGTIFGRDVP-GPRYGVARGAE 73 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCccc--CcccCCCCC-C-----CCCCCcHHHHHHHHhcccCC-CcccccCCCCE
Confidence 579999999999999999999999987543 344444322 1 17899999999999998666 34679999999
Q ss_pred EEEEEccCC----CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCC--CchHHHHHHHHHHHHh--------------
Q psy5372 234 VGGVKLLDG----ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMD--GPGKLSKAAIDRGIRE-------------- 293 (586)
Q Consensus 234 l~~~~v~~~----~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~--~~~~~~~~a~~~a~~~-------------- 293 (586)
|+.++++.. ....+.++++|++. ++++|||||||....+.... .........++.+.+.
T Consensus 74 i~~~~~~~~~~~~~~~~i~~ai~~a~~-~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 152 (297)
T cd07480 74 IALIGKVLGDGGGGDGGILAGIQWAVA-NGADVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQ 152 (297)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHH-cCCCEEEeccCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 999999753 36678999999987 78999999999865222100 0011112222222111
Q ss_pred ccCCCCcEEEEecCCCCCCCCCCCCC-CCCCCceEEEEeeecCCCCCCCCCCC----CCcceeccccCCCCCCCceEEec
Q psy5372 294 GRQGKGVLFVFAAGNGKYNGDNCAAD-GYINSIYTIAIASAREDGQSPFYSEE----CTGLIATAYSGGISDPVKIITTD 368 (586)
Q Consensus 294 ~~~~~Gi~~V~AAGN~g~~~~~~~~~-~~~~~~~vi~Vga~~~~~~~a~~S~~----G~~~~~~~~~~~~apg~~i~st~ 368 (586)
.+..+|+++|+||||++.....+.+. .+...++++.|++++..+....+++. +...++ .+||..|+++.
T Consensus 153 ~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~~~~~~~~~~~~~~~~~~dv------~ApG~~i~s~~ 226 (297)
T cd07480 153 AALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGALGRTGNFSAVANFSNGEVDI------AAPGVDIVSAA 226 (297)
T ss_pred hhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCCCCCCCccccCCCCCCceEE------EeCCCCeEeec
Confidence 12348999999999998753332221 12222344444444444443333332 222333 56999999885
Q ss_pred CCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHh
Q psy5372 369 VHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAW 412 (586)
Q Consensus 369 ~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~ 412 (586)
.++.|..++|||||||+|||++|||++++|++++++++++|+.
T Consensus 227 -~~~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~ 269 (297)
T cd07480 227 -PGGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQA 269 (297)
T ss_pred -CCCcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence 5667899999999999999999999999999999999998884
No 33
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=3.6e-39 Score=345.43 Aligned_cols=267 Identities=23% Similarity=0.237 Sum_probs=201.8
Q ss_pred CCCCCcEEEEEecCccCCCcccccCC---CCCCcccccCC------------------------CCCCCCCC-CCCCCCh
Q psy5372 156 INGAGVNIIIIDDGMEYTHEDIKDSF---APELSYNFNAE------------------------KWDITPRY-EDPRNKH 207 (586)
Q Consensus 156 ~~G~gv~VaViDtGid~~Hpdl~~~~---~~~~~~~~~~~------------------------~~~~~~~~-~~d~~~H 207 (586)
++|+||+|||||||||+.||+|...- +....||.... ..+|.... ..|..||
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~GH 80 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPGGYYGGGEYTEEIINAALASDNPYDIVPSRDENGH 80 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCccccCceEEeHHHHHHHHhcCCccccCcCCCCCCc
Confidence 48999999999999999999998421 00011221111 11221111 1178999
Q ss_pred HHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCC--------------chhHHHHHHhhhcC----CCCeEEEcCCCC
Q psy5372 208 GTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGE--------------TTDLIESKALQFGL----DKVDIYSGSWGP 269 (586)
Q Consensus 208 GT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~--------------~~~~~~a~~~~~~~----~~~~Vin~S~G~ 269 (586)
||||||||||..+++.++.||||+|+|+++|+++.. .++++.|++|+... +...|||||||.
T Consensus 81 GThvAGIiag~~~~~~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VInlSlG~ 160 (455)
T cd07478 81 GTHVAGIAAGNGDNNPDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGT 160 (455)
T ss_pred hHHHHHHHhcCCCCCCCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 999999999998888899999999999999998542 46889999987753 357899999997
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCC-----------------------------------
Q psy5372 270 PDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGD----------------------------------- 314 (586)
Q Consensus 270 ~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~----------------------------------- 314 (586)
..... ++ ...+.++++.+... +|+++|+||||++....
T Consensus 161 ~~g~~--~g-~~~l~~~i~~~~~~----~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~~~~~eiW~~~~ 233 (455)
T cd07478 161 NFGSH--DG-TSLLERYIDAISRL----RGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEKGFNLEIWGDFP 233 (455)
T ss_pred CCCCC--CC-ccHHHHHHHHHHhh----CCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCcceEEEEecCCC
Confidence 53221 11 22567777776663 59999999999997300
Q ss_pred --------------------------------------------------------------------------------
Q psy5372 315 -------------------------------------------------------------------------------- 314 (586)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (586)
T Consensus 234 d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~~~~GiW~i~~~~~~~~~g~~~ 313 (455)
T cd07478 234 DRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKNIKPGIWKIRLTGVSITDGRFD 313 (455)
T ss_pred CEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccCCCccceEEEEEeccCCCceEE
Confidence
Q ss_pred --------------------CCCCCCCCCCceEEEEeeecCCC-CCCCCCCCCCcceeccccCCCCCCCceEEecCCCCe
Q psy5372 315 --------------------NCAADGYINSIYTIAIASAREDG-QSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTC 373 (586)
Q Consensus 315 --------------------~~~~~~~~~~~~vi~Vga~~~~~-~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~ 373 (586)
......|+..+++|+|||++... .++.||++|+......+++..+||..|+++.+ ++.
T Consensus 314 ~Wlp~~~~~~~~t~f~~~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~~~~~kpdi~APG~~i~s~~~-~~~ 392 (455)
T cd07478 314 AWLPSRGLLSENTRFLEPDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTRDGRIKPDIAAPGVNILTASP-GGG 392 (455)
T ss_pred EEecCcCcCCCCCEeecCCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCCCCCcCceEEecCCCEEEeec-CCc
Confidence 00122345567899999999865 48999999998777777777899999999864 667
Q ss_pred eeccCCCCchHHHHHHHHHHHHhhC------CCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCccccc
Q psy5372 374 TCEHSGTSAAAPIAAGVLALALEAN------PNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFG 441 (586)
Q Consensus 374 ~~~~~GTS~AaP~VAG~aALl~~~~------p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G 441 (586)
|..++|||||||||||++|||+|.. |.|++++||.+|+++|++..... .++..+|||
T Consensus 393 ~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~~-----------~pn~~~GyG 455 (455)
T cd07478 393 YTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGDE-----------YPNPEWGYG 455 (455)
T ss_pred EEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCccCCCCC-----------CCCCCCCCC
Confidence 8999999999999999999999964 56799999999999999875211 247889998
No 34
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=1.1e-38 Score=331.79 Aligned_cols=204 Identities=20% Similarity=0.164 Sum_probs=161.0
Q ss_pred CCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCC------chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCC
Q psy5372 203 PRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGE------TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSM 276 (586)
Q Consensus 203 d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~------~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~ 276 (586)
|..+|||||||||+|..+++.++.||||+|+|+++|+++.. ...++.++.++.. .+++|||||||......
T Consensus 183 d~~gHGThVAGIIAg~~~~~~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~-~gadVIN~SlG~~~~~~-- 259 (412)
T cd04857 183 DSGAHGTHVAGIAAAHFPEEPERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIE-TKCDLINMSYGEATHWP-- 259 (412)
T ss_pred CCCCCHHHHHHHHhCCCCCCCceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHH-cCCCEEEecCCcCCCCc--
Confidence 66799999999999997788889999999999999998642 2357888888887 78999999999753211
Q ss_pred CCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCC-CCceEEEEeeecC--------------CCCCCC
Q psy5372 277 DGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYI-NSIYTIAIASARE--------------DGQSPF 341 (586)
Q Consensus 277 ~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~-~~~~vi~Vga~~~--------------~~~~a~ 341 (586)
. . ..+.+++.+++.. +|++||+||||+|... +....|+ ..++||+|||+.. .+.+..
T Consensus 260 ~-~-~~~~~~~~~~~~~----~GVlvVaAAGN~G~~~--~tv~~P~~~~~~VIsVGA~~~~~~~~~~y~~~~~~~~~~~~ 331 (412)
T cd04857 260 N-S-GRIIELMNEAVNK----HGVIFVSSAGNNGPAL--STVGAPGGTTSSVIGVGAYVSPEMMAAEYSLREKLPGNQYT 331 (412)
T ss_pred c-c-hHHHHHHHHHHHh----CCCEEEEECCCCCCCc--cccCCccccCCCeEEEcceeccCccccccccccccCCcccc
Confidence 1 1 1345566665553 7999999999999753 3333444 4688999999853 355788
Q ss_pred CCCCCCcceeccccCCCCCCCceEEec-CCCCeeeccCCCCchHHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCc
Q psy5372 342 YSEECTGLIATAYSGGISDPVKIITTD-VHNTCTCEHSGTSAAAPIAAGVLALALEA----NPNMTWRDCQHILAWTSER 416 (586)
Q Consensus 342 ~S~~G~~~~~~~~~~~~apg~~i~st~-~~~~~~~~~~GTS~AaP~VAG~aALl~~~----~p~lt~~~v~~~L~~tA~~ 416 (586)
||++||..+....++..+||..|.++. .....|..++|||||||||||++|||+++ +|.+++.+||++|++||++
T Consensus 332 fSSrGP~~dG~~~pdI~APG~~I~s~p~~~~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 332 WSSRGPTADGALGVSISAPGGAIASVPNWTLQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred ccccCCcccCCcCceEEeCCCcEEEcccCCCCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 999999877655566678999998753 22345788999999999999999999964 7899999999999999986
Q ss_pred C
Q psy5372 417 E 417 (586)
Q Consensus 417 ~ 417 (586)
+
T Consensus 412 ~ 412 (412)
T cd04857 412 L 412 (412)
T ss_pred C
Confidence 3
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=1e-38 Score=321.65 Aligned_cols=246 Identities=24% Similarity=0.260 Sum_probs=190.0
Q ss_pred CCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEE
Q psy5372 157 NGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGG 236 (586)
Q Consensus 157 ~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~ 236 (586)
+|+||+|+|||+|++.+||+|.+++.....+.......... ..+..+|||+|||+|++..++ .+..||||+|+|+.
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~HGT~vagiiag~~~~-~~~~GiAp~a~i~~ 76 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEASYYVAVNDAGYAS---NGDGDSHGTHVAGVIAAARDG-GGMHGVAPDATLYS 76 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccccccccccccCCC---CCCCCChHHHHHHHHhcCcCC-CCcccCCcCCEEEE
Confidence 69999999999999999999999876654443332211111 117789999999999998655 78899999999999
Q ss_pred EEccCCC-----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCC--------CchHHHHHHHHHHHHhccCCCCcEEE
Q psy5372 237 VKLLDGE-----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMD--------GPGKLSKAAIDRGIREGRQGKGVLFV 303 (586)
Q Consensus 237 ~~v~~~~-----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~--------~~~~~~~~a~~~a~~~~~~~~Gi~~V 303 (586)
+|+++.. ...+.+++.++.. .+++|||||||......... .....+.++++.+.. +|++||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~gi~iv 150 (267)
T cd04848 77 ARASASAGSTFSDADIAAAYDFLAA-SGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAAN-----AGGLFV 150 (267)
T ss_pred EeccCCCCcccchHHHHHHHHHHHh-CCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhh-----CCeEEE
Confidence 9999643 4667778888776 78999999999875332111 123356666666655 799999
Q ss_pred EecCCCCCCCCCCC-----CCCCCCCceEEEEeeecCCCCCCCC--CCCCCcceeccccCCCCCCCceEEecCC-CCeee
Q psy5372 304 FAAGNGKYNGDNCA-----ADGYINSIYTIAIASAREDGQSPFY--SEECTGLIATAYSGGISDPVKIITTDVH-NTCTC 375 (586)
Q Consensus 304 ~AAGN~g~~~~~~~-----~~~~~~~~~vi~Vga~~~~~~~a~~--S~~G~~~~~~~~~~~~apg~~i~st~~~-~~~~~ 375 (586)
+||||++....... ...++..+++|+||+++..+....| |++|...... ...+||..|+++... ...|.
T Consensus 151 ~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~~~~~~~~s~~~~~~~~~---~~~apG~~i~~~~~~~~~~~~ 227 (267)
T cd04848 151 FAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNGTIASYSYSNRCGVAANW---CLAAPGENIYSTDPDGGNGYG 227 (267)
T ss_pred EeCCCCCCCCCccccccccccCccccCCEEEEEEecCCCCcccccccccchhhhhh---eeecCcCceeecccCCCCccc
Confidence 99999987543322 1223456789999999999999988 9988644211 124688889888642 56788
Q ss_pred ccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q psy5372 376 EHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 376 ~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~ 415 (586)
.++|||||||+|||++|||++++|+|+++|||++|+.||+
T Consensus 228 ~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 228 RVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred ccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=8.5e-39 Score=327.30 Aligned_cols=239 Identities=24% Similarity=0.198 Sum_probs=173.2
Q ss_pred CcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCC-------CCCCCCCCChHHHHHHHHhccCCCCCcceeeecCc
Q psy5372 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDIT-------PRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGA 232 (586)
Q Consensus 160 gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a 232 (586)
.|+|||||+||+.+||+|++++.............++. .....|..+|||||||+|++..++ .||||+|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia~~~~~----~GvAp~a 76 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIAANGNI----KGVAPGI 76 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccccccccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHhcCCCC----ceeCCCC
Confidence 48999999999999999997654322111111111110 001116689999999999997543 4999999
Q ss_pred EEEEEEccCCC----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCC----CchHHHHHHHHHHHHhccCCCCcEEEE
Q psy5372 233 RVGGVKLLDGE----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMD----GPGKLSKAAIDRGIREGRQGKGVLFVF 304 (586)
Q Consensus 233 ~l~~~~v~~~~----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~----~~~~~~~~a~~~a~~~~~~~~Gi~~V~ 304 (586)
+|+++|+++.. ..++++++.++.. ++++|||||||......... .....+.++++++.. +|++||+
T Consensus 77 ~i~~~~v~~~~~~~~~~~~~~ai~~a~~-~~~~vin~S~G~~~~~~~~~~~~~~~~~~~~~~i~~a~~-----~g~lvv~ 150 (294)
T cd07482 77 GIVSYRVFGSCGSAESSWIIKAIIDAAD-DGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKS-----KGSIVVA 150 (294)
T ss_pred EEEEEEeecCCCCcCHHHHHHHHHHHHH-CCCCEEEeCCccCCCCCcccccchhhhHHHHHHHHHHHH-----CCCEEEE
Confidence 99999998643 5688899999987 78999999999754322111 111234455555444 7999999
Q ss_pred ecCCCCCCCCCC------------------CCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceE-
Q psy5372 305 AAGNGKYNGDNC------------------AADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKII- 365 (586)
Q Consensus 305 AAGN~g~~~~~~------------------~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~- 365 (586)
||||+|...+.. .+..|+..+++|+|||++..+.++.||++|......+. ||..+.
T Consensus 151 AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~~~~S~~g~~~~~~~a-----pG~~~~~ 225 (294)
T cd07482 151 AAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATDNNGNLSSFSNYGNSRIDLAA-----PGGDFLL 225 (294)
T ss_pred eCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeCCCCCcCccccCCCCcceEEC-----CCCCccc
Confidence 999999754221 34566778999999999999999999999865433222 222221
Q ss_pred --------------------EecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCH-HHHHHHHHhc
Q psy5372 366 --------------------TTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTW-RDCQHILAWT 413 (586)
Q Consensus 366 --------------------st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~-~~v~~~L~~t 413 (586)
......+.|..++|||||||+|||++|||++++|.|++ +|||++|++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 226 LDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 11123456888999999999999999999999999999 9999999976
No 37
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=1.2e-39 Score=331.47 Aligned_cols=271 Identities=29% Similarity=0.356 Sum_probs=203.5
Q ss_pred EEEEEecCccCCCcccc-cCCCCCC---cccccCCCCCCCCCCCCCCCChHHHHHHHHhccC-CCCCcceeeecCcEEEE
Q psy5372 162 NIIIIDDGMEYTHEDIK-DSFAPEL---SYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKP-NNSKCGVGVCYGARVGG 236 (586)
Q Consensus 162 ~VaViDtGid~~Hpdl~-~~~~~~~---~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~-~n~~g~~GVAp~a~l~~ 236 (586)
+|||||+|||.+||+|. +++.... +|++.+......+ ..+..+|||||||+|++.. .++.+..||||+|+|+.
T Consensus 1 ~V~viDtGid~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~HGT~va~ii~~~~~~~~~~~~Gva~~a~l~~ 78 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNFIWSKVPGGYNFVDGNPNPSP--SDDDNGHGTHVAGIIAGNGGNNGPGINGVAPNAKLYS 78 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTEEEEEEEEEEETTTTBSTTTS--SSTSSSHHHHHHHHHHHTTSSSSSSETCSSTTSEEEE
T ss_pred CEEEEcCCcCCCChhHccCCcccccccceeeccCCCCCcCc--cccCCCccchhhhhccccccccccccccccccccccc
Confidence 69999999999999999 6655322 5677766522211 1278899999999999997 67888999999999999
Q ss_pred EEccCCC---chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCC
Q psy5372 237 VKLLDGE---TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNG 313 (586)
Q Consensus 237 ~~v~~~~---~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~ 313 (586)
+++++.. ...++.++.++....+++|||||||...... .......+..+++.+.. +|+++|+||||++...
T Consensus 79 ~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~-~~~~~~~~~~~~~~~~~-----~g~l~v~aaGN~~~~~ 152 (282)
T PF00082_consen 79 YKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPP-DPSYSDILEEAIDYAEK-----KGILIVFAAGNNGPND 152 (282)
T ss_dssp EECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSS-HSHHHHHHHHHHHHHHH-----TTEEEEEE--SSSSBT
T ss_pred cccccccccccccccchhhhhhhccCCcccccccccccccc-ccccccccccccccccc-----cCcceeeccccccccc
Confidence 9998654 6678889999884478999999998732100 00111234445555544 7999999999988752
Q ss_pred CCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcc-eeccccCCCCCCCceEEecCCC--CeeeccCCCCchHHHHHHH
Q psy5372 314 DNCAADGYINSIYTIAIASAREDGQSPFYSEECTGL-IATAYSGGISDPVKIITTDVHN--TCTCEHSGTSAAAPIAAGV 390 (586)
Q Consensus 314 ~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~-~~~~~~~~~apg~~i~st~~~~--~~~~~~~GTS~AaP~VAG~ 390 (586)
.. ....|+..+++|+||+++..+.++.||++|+.. .....+...+||..+.+..... ..+..++|||||||+|||+
T Consensus 153 ~~-~~~~Pa~~~~vi~Vg~~~~~~~~~~~s~~g~~~~~~~~~~di~a~G~~i~~~~~~~~~~~~~~~~GTS~Aap~vag~ 231 (282)
T PF00082_consen 153 DR-NISFPASSPNVITVGAVDNNGQPASYSNYGGPSDDGRIKPDIAAPGGNILSAVPGSDRGSYTSFSGTSFAAPVVAGA 231 (282)
T ss_dssp TB-TGEBTTTSTTSEEEEEEETTSSBSTTSSBSTTETTCTTCEEEEEECSSEEEEETTTESEEEEEEESHHHHHHHHHHH
T ss_pred cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCcCCchHHHHHHH
Confidence 21 134566678899999999999999999997654 2222333355888887664332 3477899999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccccccCHHHHHH
Q psy5372 391 LALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLVS 450 (586)
Q Consensus 391 aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~Av~ 450 (586)
+|||++++|++++++||++|+.||.+.+.. . +..++..||||++|+++||+
T Consensus 232 ~All~~~~p~~~~~~i~~~l~~ta~~~~~~--------~-~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 232 AALLLSKYPNLTPAEIKALLINTADDLGST--------N-GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHSBESSET--------T-SSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCcccCcC--------C-CCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999988611 1 33467789999999999984
No 38
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.4e-37 Score=305.07 Aligned_cols=218 Identities=24% Similarity=0.265 Sum_probs=171.4
Q ss_pred CcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEc
Q psy5372 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKL 239 (586)
Q Consensus 160 gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v 239 (586)
||+|||||+||+.+||+|.+++.....+.......+ +....|..+|||||||+|++. +|+++|+.+|+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~~~~~~~~~~~~~--~~~~~d~~gHGT~vAgiia~~----------~p~~~i~~~~v 68 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALDGEVTIDLEIIVV--SAEGGDKDGHGTACAGIIKKY----------APEAEIGSIKI 68 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccccccccccccccC--CCCCCCCCCcHHHHHHHHHcc----------CCCCeEEEEEE
Confidence 799999999999999999998665433211100011 111117889999999999875 59999999999
Q ss_pred cCC----CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCC
Q psy5372 240 LDG----ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDN 315 (586)
Q Consensus 240 ~~~----~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~ 315 (586)
++. ....+.++++|+.. ++++|||||||..... ....+.++++++.+ +|+++|+||||++...
T Consensus 69 ~~~~~~~~~~~~~~ai~~a~~-~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a~~-----~g~l~V~aagN~~~~~-- 135 (222)
T cd07492 69 LGEDGRCNSFVLEKALRACVE-NDIRIVNLSLGGPGDR-----DFPLLKELLEYAYK-----AGGIIVAAAPNNNDIG-- 135 (222)
T ss_pred eCCCCCcCHHHHHHHHHHHHH-CCCCEEEeCCCCCCCC-----cCHHHHHHHHHHHH-----CCCEEEEECCCCCCCC--
Confidence 864 36778899999987 7999999999986431 23367788888877 5999999999998641
Q ss_pred CCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceeccccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHH
Q psy5372 316 CAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALAL 395 (586)
Q Consensus 316 ~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~ 395 (586)
..|+..++||+||+.+..+..+.| +....+ .+||..|+++. .++.|..++|||||||+|||++|||+
T Consensus 136 ---~~Pa~~~~vi~V~~~~~~~~~~~~---~~~~~~------~apg~~i~~~~-~~~~~~~~~GTS~Aap~vaG~~All~ 202 (222)
T cd07492 136 ---TPPASFPNVIGVKSDTADDPKSFW---YIYVEF------SADGVDIIAPA-PHGRYLTVSGNSFAAPHVTGMVALLL 202 (222)
T ss_pred ---CCCccCCceEEEEecCCCCCcccc---cCCceE------EeCCCCeEeec-CCCCEEEeccHHHHHHHHHHHHHHHH
Confidence 126778999999999877765544 333333 45889998885 45678899999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhcCC
Q psy5372 396 EANPNMTWRDCQHILAWTSE 415 (586)
Q Consensus 396 ~~~p~lt~~~v~~~L~~tA~ 415 (586)
+++|+|+++||+++|+.||+
T Consensus 203 ~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 203 SEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999985
No 39
>KOG4266|consensus
Probab=100.00 E-value=3.4e-34 Score=294.35 Aligned_cols=405 Identities=16% Similarity=0.139 Sum_probs=266.2
Q ss_pred ccccceeeeeEEEEEcCCc-chH--HHHHHHh------CCeEeeecCCC----CCeEEEEEcCCCCCCCCcccccccccc
Q psy5372 5 VERAEHFLNQWVVHISGDP-DIA--NQVAQDL------GFHYNGIINGL----DNHYLFSKKQHNHKTPEETTFETVGLL 71 (586)
Q Consensus 5 ~~~~~~~~~~~iV~~~~~~-~~~--~~~~~~~------g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~ 71 (586)
..+..+|+.||||.|+.-. ..+ .-++.++ ++++...+++. .++-++++.+.. .+....++.+|.
T Consensus 42 ~f~~tvve~EyIv~F~~y~~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~---k~~~~~~ierLe 118 (1033)
T KOG4266|consen 42 PFNVTVVESEYIVRFKQYKPAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESG---KEAVVGEIERLE 118 (1033)
T ss_pred ccceeeecceeEEEecccccchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccC---ccchhheeeehh
Confidence 3456789999999999431 111 1233333 23444444432 134445554322 223455689999
Q ss_pred CCCceeEEeecchhhccccchhhHHHHHHhhhhhhhcchhhccccCCCCCCCCCCCCCcccccCCCCCCCCCCCCchHHH
Q psy5372 72 NDARVIWTQQQFAKHLRKRAEIQELRRQLRAMSQIYRKETEVSKYEGMFTDEWWPMQWYEQDYRLSNSSKKLDLNIVPVY 151 (586)
Q Consensus 72 ~~p~V~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~qw~l~~~~~~~~~~~~~i~~~~aw 151 (586)
.+|.|..+.|++.+.+--.-....+. +....-..+-.+...+...+.-..+-..|.-+-..|.... -..+.++-+|
T Consensus 119 ~hp~vk~v~pqr~V~r~l~y~~~~~~---p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv-~s~l~Ad~LW 194 (1033)
T KOG4266|consen 119 MHPDVKVVFPQRRVLRGLSYPDGKKR---PGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQV-TSMLGADHLW 194 (1033)
T ss_pred cCCCceeecchhhhhhcccccccCCC---CCcceeeeeccccccccCCccccccccccchhhhhhhHHH-HHHhchhhHH
Confidence 99999999998887654210000000 0000000000000001111111112222211101111111 1456788999
Q ss_pred HcCCCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecC
Q psy5372 152 QELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYG 231 (586)
Q Consensus 152 ~~~~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~ 231 (586)
+ +|++|++|+|||+|||+..+||.|+. +... -+..+.+.- +|.-||||.|||+||+.. .-.|.||+
T Consensus 195 k-~GyTGa~VkvAiFDTGl~~~HPHFrn-vKER--TNWTNE~tL------dD~lgHGTFVAGvia~~~----ec~gfa~d 260 (1033)
T KOG4266|consen 195 K-KGYTGAKVKVAIFDTGLRADHPHFRN-VKER--TNWTNEDTL------DDNLGHGTFVAGVIAGRN----ECLGFASD 260 (1033)
T ss_pred h-ccccCCceEEEEeecccccCCccccc-hhhh--cCCcCcccc------ccCcccceeEeeeeccch----hhcccCCc
Confidence 9 99999999999999999999999975 2221 122222111 178899999999999973 24899999
Q ss_pred cEEEEEEccCCC----chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecC
Q psy5372 232 ARVGGVKLLDGE----TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAG 307 (586)
Q Consensus 232 a~l~~~~v~~~~----~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAG 307 (586)
++|+.+|++... .+..++|+.+++. .+++|+|+|.|+++. ++-| .....++- .. .++|+|.|+|
T Consensus 261 ~e~~~frvft~~qVSYTSWFLDAFNYAI~-~kidvLNLSIGGPDf---mD~P--FVeKVwEl-tA-----nNvIMvSAiG 328 (1033)
T KOG4266|consen 261 TEIYAFRVFTDAQVSYTSWFLDAFNYAIA-TKIDVLNLSIGGPDF---MDLP--FVEKVWEL-TA-----NNVIMVSAIG 328 (1033)
T ss_pred cceeEEEeeccceeehhhHHHHHHHHHHh-hhcceEeeccCCccc---ccch--HHHHHHhh-cc-----CcEEEEEecC
Confidence 999999998543 7889999999998 789999999999763 2222 22233332 22 4999999999
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEeeecCCCCCCCCCCCCCcceec------cccCCCCCCCceEEecCCCCeeeccCCCC
Q psy5372 308 NGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIAT------AYSGGISDPVKIITTDVHNTCTCEHSGTS 381 (586)
Q Consensus 308 N~g~~~~~~~~~~~~~~~~vi~Vga~~~~~~~a~~S~~G~~~~~~------~~~~~~apg~~i~st~~~~~~~~~~~GTS 381 (586)
|+|+.....+ .|+....||.||.++.++.++.||++|-..+-. ..++..+.|..+.......+| ...+|||
T Consensus 329 NDGPLYGTLN--NPaDQsDViGVGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~GC-r~LSGTS 405 (1033)
T KOG4266|consen 329 NDGPLYGTLN--NPADQSDVIGVGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVSTGC-RSLSGTS 405 (1033)
T ss_pred CCCcceeecC--CcccccceeeeccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccccc-hhccCCc
Confidence 9998654433 456667799999999999999999999776432 222233445566555555565 5689999
Q ss_pred chHHHHHHHHHHHHh----hCCCCCHHHHHHHHHhcCCcCCCCCCCCccccCCCcccCCcccccccCHHHHHHHHhccCC
Q psy5372 382 AAAPIAAGVLALALE----ANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLVSLAKNWVN 457 (586)
Q Consensus 382 ~AaP~VAG~aALl~~----~~p~lt~~~v~~~L~~tA~~~~~~~~~~w~~n~~g~~~~~~~G~G~vna~~Av~~a~~~~~ 457 (586)
.|+|.|||+++|+.+ +.--+.|+-+|+.|+..|.+++..+ -...|.|++|..++.+..+.+.+
T Consensus 406 VaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~N-------------MfEQGaGkldLL~syqiL~SYkP 472 (1033)
T KOG4266|consen 406 VASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGPN-------------MFEQGAGKLDLLESYQILKSYKP 472 (1033)
T ss_pred ccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCCc-------------hhhccCcchhHHHHHHHHHhcCC
Confidence 999999999999998 2445789999999999999986543 35679999999999999998875
Q ss_pred C
Q psy5372 458 V 458 (586)
Q Consensus 458 ~ 458 (586)
.
T Consensus 473 ~ 473 (1033)
T KOG4266|consen 473 R 473 (1033)
T ss_pred C
Confidence 4
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=6.2e-31 Score=259.69 Aligned_cols=234 Identities=32% Similarity=0.386 Sum_probs=179.3
Q ss_pred cEEEEEecCccCCCcccccCC-CCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEc
Q psy5372 161 VNIIIIDDGMEYTHEDIKDSF-APELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKL 239 (586)
Q Consensus 161 v~VaViDtGid~~Hpdl~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v 239 (586)
|+|+|||+|++.+||+|.... .....+++......+. ...+..+|||+||++|++..++.. ..|+||+++|+.+++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~HGt~va~~i~~~~~~~~-~~g~a~~a~i~~~~~ 77 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFGGGDGGNDDDDNENGPT--DPDDGNGHGTHVAGIIAASANNGG-GVGVAPGAKLIPVKV 77 (241)
T ss_pred CEEEEEeCCCCCCCcchhccccCcccccccccCcCCCC--CCCCCCCcHHHHHHHHhcCCCCCC-CEEeCCCCEEEEEEE
Confidence 689999999999999862111 1112233333222111 111678999999999999855543 499999999999999
Q ss_pred cCC----CchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCC
Q psy5372 240 LDG----ETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDN 315 (586)
Q Consensus 240 ~~~----~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~ 315 (586)
.+. ....++++++++...++++|||||||..... +...+.++++++... +|+++|+|+||.+.....
T Consensus 78 ~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-----~~~~~~~~~~~~~~~----~~~i~V~aaGN~~~~~~~ 148 (241)
T cd00306 78 LDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-----PSSALSEAIDYALAK----LGVLVVAAAGNDGPDGGT 148 (241)
T ss_pred ecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHh----cCeEEEEecCCCCCCCCC
Confidence 875 3677889999988338899999999986432 234677888888773 499999999999986322
Q ss_pred CCCCCCCCCceEEEEeeecCCCCCC-CCCCCCCcceeccccCCCCCCCceEEe-cCCCCeeeccCCCCchHHHHHHHHHH
Q psy5372 316 CAADGYINSIYTIAIASAREDGQSP-FYSEECTGLIATAYSGGISDPVKIITT-DVHNTCTCEHSGTSAAAPIAAGVLAL 393 (586)
Q Consensus 316 ~~~~~~~~~~~vi~Vga~~~~~~~a-~~S~~G~~~~~~~~~~~~apg~~i~st-~~~~~~~~~~~GTS~AaP~VAG~aAL 393 (586)
. +..++..+++|+||+++..+... .+++++...++.+ ||..+... ......+..++|||||||+|||++||
T Consensus 149 ~-~~~p~~~~~vi~Vga~~~~~~~~~~~~~~~~~~~~~a------pg~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al 221 (241)
T cd00306 149 N-IGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIAA------PGGDILSSPTTGGGGYATLSGTSMAAPIVAGVAAL 221 (241)
T ss_pred C-ccCCccCCceEEEEecCcCCCccCCcCCCCCCceEEe------CcCCccCcccCCCCCeEeeccHHHHHHHHHHHHHH
Confidence 1 35677889999999999999988 8999998888855 45554442 22456688999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhc
Q psy5372 394 ALEANPNMTWRDCQHILAWT 413 (586)
Q Consensus 394 l~~~~p~lt~~~v~~~L~~t 413 (586)
+++++|++++.+++++|+.+
T Consensus 222 ~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 222 LLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999864
No 41
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.97 E-value=5.8e-31 Score=260.08 Aligned_cols=192 Identities=18% Similarity=0.094 Sum_probs=137.3
Q ss_pred CCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCCchhHHHHHHhhh-cCCCCeEEEcCCCCCCCCCC---CCC
Q psy5372 203 PRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGETTDLIESKALQF-GLDKVDIYSGSWGPPDDGKS---MDG 278 (586)
Q Consensus 203 d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~-~~~~~~Vin~S~G~~~~~~~---~~~ 278 (586)
|.++|||||||||+|.. |++|+++++..++.....+.+..++.|+. ...+++|||||||....... ...
T Consensus 35 ~~~~HGThVAgiiag~~-------~~~p~a~~~~~~~~~~~~~~~~~~i~~~~~~~~gv~VINmS~G~~~~~~~~~~~~~ 107 (247)
T cd07488 35 TFDDHATLVASIMGGRD-------GGLPAVNLYSSAFGIKSNNGQWQECLEAQQNGNNVKIINHSYGEGLKRDPRAVLYG 107 (247)
T ss_pred CCCCHHHHHHHHHHhcc-------CCCCccceehhhhCCCCCCccHHHHHHHHHhcCCceEEEeCCccCCCCCccccccc
Confidence 78999999999999972 45699999976665444455666666663 23689999999997643210 011
Q ss_pred chHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCC-CCCCCCCCCceEEEEeeecCCCCCCCC---CCCC--Ccceec
Q psy5372 279 PGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDN-CAADGYINSIYTIAIASAREDGQSPFY---SEEC--TGLIAT 352 (586)
Q Consensus 279 ~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~-~~~~~~~~~~~vi~Vga~~~~~~~a~~---S~~G--~~~~~~ 352 (586)
. ..+..+++++..+ +|+++|+||||+|..... ..+..|+..+++|+|||++..+.++.+ |+++ +.....
T Consensus 108 ~-~~l~~aid~~a~~----~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~~~~s~~sn~~~~~~~~~~ 182 (247)
T cd07488 108 Y-ALLSLYLDWLSRN----YEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDRFFASDVSNAGSEINSYGR 182 (247)
T ss_pred c-chHHHHHHHHHhh----CCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCcceecccccccCCCCCCCC
Confidence 1 1455666666552 499999999999985322 234567788999999999999987544 5443 211112
Q ss_pred cccCCCCCCCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHH
Q psy5372 353 AYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHI 409 (586)
Q Consensus 353 ~~~~~~apg~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~ 409 (586)
..+...+||..|++ ..+.|..++|||||||||||++|||++++|++.+.++-.+
T Consensus 183 ~~~di~APG~~i~s---~~~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~ 236 (247)
T cd07488 183 RKVLIVAPGSNYNL---PDGKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNL 236 (247)
T ss_pred ceeEEEEeeeeEEC---CCCceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhH
Confidence 22334679999988 3456788999999999999999999999999886544333
No 42
>KOG1114|consensus
Probab=99.94 E-value=9.2e-27 Score=249.70 Aligned_cols=230 Identities=21% Similarity=0.168 Sum_probs=172.7
Q ss_pred CCCChHHHHHHHHhccCCCCCcceeeecCcEEEEEEccCCC------chhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCC
Q psy5372 203 PRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGE------TTDLIESKALQFGLDKVDIYSGSWGPPDDGKSM 276 (586)
Q Consensus 203 d~~~HGT~vAgiia~~~~n~~g~~GVAp~a~l~~~~v~~~~------~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~ 276 (586)
...-||||||||++|+....--.-||||+|+|+++++.|+. ...+..|+..+++ +++||||||||-...-.
T Consensus 308 ~Sg~HGTHVAgIa~anhpe~p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e-~~vDiINmSyGE~a~~p-- 384 (1304)
T KOG1114|consen 308 VSGPHGTHVAGIAAANHPETPELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIE-HNVDIINMSYGEDAHLP-- 384 (1304)
T ss_pred cCCCCcceehhhhccCCCCCccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHH-hcCCEEEeccCccCCCC--
Confidence 45679999999999986555467899999999999999864 4456677766666 88999999999653211
Q ss_pred CCchHHHHHHHHHHHHhccCCCCcEEEEecCCCCCCCCCCCCCCCCCCceEEEEeeecC--------------CCCCCCC
Q psy5372 277 DGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASARE--------------DGQSPFY 342 (586)
Q Consensus 277 ~~~~~~~~~a~~~a~~~~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~--------------~~~~a~~ 342 (586)
... -+-+.+.+++.. +|+|+|.+|||+|+.......++-. ...+|.|||.-. .+....|
T Consensus 385 -n~G-RviEl~~e~vnK----r~vI~VsSAGN~GPaltTVGaPggt-TssvIgVGAYVsp~mm~a~y~~~e~vp~~~YtW 457 (1304)
T KOG1114|consen 385 -NSG-RVIELLRELVNK----RGVIYVSSAGNNGPALTTVGAPGGT-TSSVIGVGAYVSPGMMQAEYSVREPVPSNPYTW 457 (1304)
T ss_pred -Ccc-hHHHHHHHHhhh----ccEEEEEeCCCCCCceeeccCCCCc-ccceEeeeeecCHHHHHhhhhhhccCCCCcccc
Confidence 111 244555566654 8999999999999976555544422 347999999742 3445678
Q ss_pred CCCCCcceeccccCCCCCCCceEEecC-CCCeeeccCCCCchHHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCcC
Q psy5372 343 SEECTGLIATAYSGGISDPVKIITTDV-HNTCTCEHSGTSAAAPIAAGVLALALEA----NPNMTWRDCQHILAWTSERE 417 (586)
Q Consensus 343 S~~G~~~~~~~~~~~~apg~~i~st~~-~~~~~~~~~GTS~AaP~VAG~aALl~~~----~p~lt~~~v~~~L~~tA~~~ 417 (586)
|++||+.+...-.+..|||..|.+.-. .-.....|+|||||+|.++|.+|||++. +-.+||.-||..|..||++.
T Consensus 458 sSRgP~~DG~lGVsi~APggAiAsVP~~tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l 537 (1304)
T KOG1114|consen 458 SSRGPCLDGDLGVSISAPGGAIASVPQYTLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKL 537 (1304)
T ss_pred ccCCCCcCCCcceEEecCCccccCCchhhhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhccccc
Confidence 999998876443344567766655311 1122467999999999999999999984 67899999999999999998
Q ss_pred CCCCCCCccccCCCcccCCcccccccCHHHHHHHHhcc
Q psy5372 418 PLSHVSGWERNARDLWFHSAYGFGLINTFKLVSLAKNW 455 (586)
Q Consensus 418 ~~~~~~~w~~n~~g~~~~~~~G~G~vna~~Av~~a~~~ 455 (586)
+..+ ....|.|++++.+|.+...+.
T Consensus 538 ~~id-------------~faqG~GmlqVdkAyEyL~q~ 562 (1304)
T KOG1114|consen 538 GDID-------------SFAQGQGMLQVDKAYEYLAQS 562 (1304)
T ss_pred Cccc-------------hhccCcceeehhHHHHHHHHh
Confidence 6554 467799999999999877655
No 43
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3e-23 Score=226.97 Aligned_cols=251 Identities=25% Similarity=0.284 Sum_probs=195.7
Q ss_pred CCCchHHHHcC--CCCCCCcEEEEEecCccCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCChHHHHHHHHhcc-CC
Q psy5372 144 DLNIVPVYQEL--NINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMK-PN 220 (586)
Q Consensus 144 ~i~~~~aw~~~--~~~G~gv~VaViDtGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~-~~ 220 (586)
.+.....|. . +++|+||+|+|+|+||+..||+|..+.... ++|.+....+ +. .+..+|||||+|+|++. ..
T Consensus 126 ~~~~~~~~~-~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~~--~~~~~~~~~~-~~--~d~~~hGt~vag~ia~~~~~ 199 (508)
T COG1404 126 AISVGALVA-NGAGLTGKGVTVAVIDTGVDASHPDLAGSAVAG--GDFVDGDPEP-PF--LDDNGHGTHVAGTIAAVIFD 199 (508)
T ss_pred hcccccccc-cccCCCCCCeEEEEeccCCCCCChhhhcccccc--cccccCCCCC-CC--CCCCCCcceeeeeeeeeccc
Confidence 345667888 6 899999999999999999999999875543 5666665543 01 17899999999999994 36
Q ss_pred CCCcceeeecCcEEEEEEccCC-----CchhHHHHHHhhhcCCC--CeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHh
Q psy5372 221 NSKCGVGVCYGARVGGVKLLDG-----ETTDLIESKALQFGLDK--VDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIRE 293 (586)
Q Consensus 221 n~~g~~GVAp~a~l~~~~v~~~-----~~~~~~~a~~~~~~~~~--~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~ 293 (586)
|..+..|++|++.++.+++++. ...+++.++.++.. .+ +++||||+|.. ........+..++..++..
T Consensus 200 ~~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~-~~~~~~~in~s~g~~----~~~~~~~~~~~a~~~~~~~ 274 (508)
T COG1404 200 NGAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAAN-LGGPADVINLSLGGS----LSDSASPALGDALAAAANA 274 (508)
T ss_pred CCCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHh-cCCCCcEEEecCCCC----ccccccHHHHHHHHHHHHc
Confidence 7778899999999999999863 25666788888877 55 99999999975 1122334677888888774
Q ss_pred ccCCCCcEEEEecCCCCCCCCCCCCCCCCCC--ceEEEEeeecCCCCCCCCCCCCCc--ceeccccCCCCCCCceEE---
Q psy5372 294 GRQGKGVLFVFAAGNGKYNGDNCAADGYINS--IYTIAIASAREDGQSPFYSEECTG--LIATAYSGGISDPVKIIT--- 366 (586)
Q Consensus 294 ~~~~~Gi~~V~AAGN~g~~~~~~~~~~~~~~--~~vi~Vga~~~~~~~a~~S~~G~~--~~~~~~~~~~apg~~i~s--- 366 (586)
.++++|+|+||.+..........|... +.+++|++++..+..+.||++|.. ... .+||..+..
T Consensus 275 ----g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~~~~~~~~s~~g~~~~~~~------~apg~~i~~~~~ 344 (508)
T COG1404 275 ----GGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDLSDTVASFSNDGSPTGVDI------AAPGVNILSLSA 344 (508)
T ss_pred ----CCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCCCCccccccccCCCCCcce------eCCCcccccccc
Confidence 349999999999986421111222333 489999999999999999999975 333 457777765
Q ss_pred --ecCCCCe--eeccCCCCchHHHHHHHHHHHHhhCC-CCCHHHHHHHHHhcCCc
Q psy5372 367 --TDVHNTC--TCEHSGTSAAAPIAAGVLALALEANP-NMTWRDCQHILAWTSER 416 (586)
Q Consensus 367 --t~~~~~~--~~~~~GTS~AaP~VAG~aALl~~~~p-~lt~~~v~~~L~~tA~~ 416 (586)
+ ..+.. +..+.||||++|+|+|++||+++.+| .+++.+++..+..++..
T Consensus 345 ~~~-~~~~~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 345 VNT-LPGDGADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred cee-eeCCccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 3 23443 89999999999999999999999999 89999999998888874
No 44
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.77 E-value=2.7e-17 Score=172.45 Aligned_cols=216 Identities=16% Similarity=0.067 Sum_probs=131.3
Q ss_pred ceeeecCcEEEEEEccCCCchhHHHHHHhhhcCC--CCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcEE
Q psy5372 225 GVGVCYGARVGGVKLLDGETTDLIESKALQFGLD--KVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLF 302 (586)
Q Consensus 225 ~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~~~--~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~~ 302 (586)
..||||+|+|+.+++.+......+.++.+++... +++|||+|||..+.... ......+.++++++.. +|++|
T Consensus 83 ~~gvAP~a~i~~~~~~~~~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~-~~~~~~~~~~~~~a~~-----~Gitv 156 (361)
T cd04056 83 AGAIAPGANITLYFAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLP-PAYAQRVCNLFAQAAA-----QGITV 156 (361)
T ss_pred HHhccCCCeEEEEEECCcCccHHHHHHHHHHHcCCCCCCEEEccCCccccccC-HHHHHHHHHHHHHHHh-----CCeEE
Confidence 5899999999999999875566667777766643 89999999998653211 1122345666666666 69999
Q ss_pred EEecCCCCCCCCC-------CCCCCCCCCceEEEEeeecCCCCCCC--------------C-CCCCCcce----------
Q psy5372 303 VFAAGNGKYNGDN-------CAADGYINSIYTIAIASAREDGQSPF--------------Y-SEECTGLI---------- 350 (586)
Q Consensus 303 V~AAGN~g~~~~~-------~~~~~~~~~~~vi~Vga~~~~~~~a~--------------~-S~~G~~~~---------- 350 (586)
|+||||+|..... .....|+.+|+|++||+++....... + |.-|-+..
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~~~~~~~~~~~~~~~~~~SGGG~S~~f~~P~yQ~~~ 236 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGTGSSAESTVWSSEGGWGGSGGGFSNYFPRPSYQSGA 236 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCcccccccccccccCCcccccCCcCCCCCCChhhhhc
Confidence 9999999986432 23456889999999999986443321 1 11111110
Q ss_pred -------------eccccCCCCC---CCceEEecCCCCeeeccCCCCchHHHHHHHHHHHHhhCCC-----CCH--HHHH
Q psy5372 351 -------------ATAYSGGISD---PVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPN-----MTW--RDCQ 407 (586)
Q Consensus 351 -------------~~~~~~~~ap---g~~i~st~~~~~~~~~~~GTS~AaP~VAG~aALl~~~~p~-----lt~--~~v~ 407 (586)
...+|+..+. +...+.. ..+.+....|||+|||++||++|||.++... +.. ..|.
T Consensus 237 ~~~~~~~~~~~~~gR~~PDVaa~a~~~~g~~i~--~~g~~~~~gGTS~aaP~~Ag~~Al~n~~~~~~g~~~lG~~np~LY 314 (361)
T cd04056 237 VLGLPPSGLYNGSGRGVPDVAANADPGTGYLVV--VNGQWYLVGGTSAAAPLFAGLIALINQARLAAGKPPLGFLNPLLY 314 (361)
T ss_pred ccCCCCCCCCCCCCCcCCeeecccCCCCCEEEE--ECCeEEeeCCccHHHHHHHHHHHHHHHHhhhcCCCCccccCHHHh
Confidence 0111111111 2222211 1244667899999999999999999998652 211 2333
Q ss_pred HHHHh---cCCcCCCCCCCC--ccccCCCcccCCcccccccCHHHH
Q psy5372 408 HILAW---TSEREPLSHVSG--WERNARDLWFHSAYGFGLINTFKL 448 (586)
Q Consensus 408 ~~L~~---tA~~~~~~~~~~--w~~n~~g~~~~~~~G~G~vna~~A 448 (586)
++-.. .-+++....+.. -..-.++..||...|+|.+|..+.
T Consensus 315 ~~~~~~~~~f~Dit~G~N~~~~~~g~~A~~GwD~vTGlGtp~~~~l 360 (361)
T cd04056 315 QLAATAPSAFNDITSGNNGGCGGAGYPAGPGWDPVTGLGTPNFAKL 360 (361)
T ss_pred hCccccCCCceecCCCCCCCCCCCCcCCCCCcccccCCCCCChHhh
Confidence 33322 111221111100 001124456899999999998765
No 45
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=99.73 E-value=7.2e-18 Score=139.58 Aligned_cols=82 Identities=38% Similarity=0.803 Sum_probs=68.0
Q ss_pred eeeEEEEEEEeCCcccceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEEE-C--CCCCee
Q psy5372 501 LEHVHATLNIEHPRRGDVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFD-T--KYDGLL 577 (586)
Q Consensus 501 ~e~v~v~~~~~~~~~g~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d-~--~~~g~l 577 (586)
||+|+|.++|+|+++|||+|+|+||+||++.|+.++..|....++.+|+|++++|+||+++|+|+|+|.| . ++.|.|
T Consensus 1 vE~v~v~v~i~H~~~gdL~i~L~SP~Gt~~~L~~~~~~d~~~~~~~~~~f~~~~f~Ge~~~G~W~L~v~D~~~~~~~G~l 80 (87)
T PF01483_consen 1 VEHVQVSVDITHPYRGDLRITLISPSGTRSTLKDRRGSDDSGSGFLNWTFTSVAFWGESANGTWTLRVTDRNSPGDTGTL 80 (87)
T ss_dssp EEEEEEEEEEEESSGGGEEEEEE-TT--EEEEE-SSTTHHHSTSEEEEEEEESTTTT-B--EEEEEEEEEBSSTTS-EEE
T ss_pred CcEEEEEEEEEcCCcCCEEEEEECCCCCEEEEECCcCCCcccccccccEEEEEeecCccCCCEEEEEEEECCCCCCcEEE
Confidence 6999999999999999999999999999999999999876678888999999999999999999999999 4 578999
Q ss_pred eEEEc
Q psy5372 578 DFITR 582 (586)
Q Consensus 578 ~~~~~ 582 (586)
+-.++
T Consensus 81 ~~w~L 85 (87)
T PF01483_consen 81 NSWSL 85 (87)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87765
No 46
>COG4935 Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-14 Score=129.64 Aligned_cols=107 Identities=28% Similarity=0.516 Sum_probs=84.0
Q ss_pred cCcceecCCCC--ceEEEEEecCCCCCCccceeeeeEEEEEEEeCCcccceEEEEEcCCC--CEEEeecCCCCCCCCCCc
Q psy5372 470 VGSSTGFSYAS--SWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIELTAPSG--VKSVLMEPRPQDDCKTGF 545 (586)
Q Consensus 470 ~~~~~~i~~~~--~~~~~~~~~~~~~~~~~~~~~e~v~v~~~~~~~~~g~l~i~l~sPsG--T~s~l~~~~~~d~~~~g~ 545 (586)
......+|++. .+.+++.+. +..++.+++|+|+|+|+++|||+|+|+||+| ..+.+...|+.|+...+|
T Consensus 11 ~~~~~~~pd~~~~~~~~~~~v~-------~~~~ik~v~V~VdI~H~yrGDL~I~L~sP~g~~Il~~~~~~~~~D~~~q~~ 83 (177)
T COG4935 11 TNLNLTLPDNDLQTISSSFSVA-------DANFIKDVTVRVDITHEYRGDLRITLISPSGQGILSNLTLGRRYDDDSQGY 83 (177)
T ss_pred eccccccCCCcccccEEEEEec-------CCCceeeEEEEEeccccccccEEEEEeCCCCcceEEeeccCCcccccccee
Confidence 34445566544 345566664 3345569999999999999999999999996 444444466778889999
Q ss_pred ccceEeeeeecCCCCCceEEEEEEECC--CCCeeeEEEcc
Q psy5372 546 VDWSILTLKHWGEDPVGEWKFEIFDTK--YDGLLDFITRN 583 (586)
Q Consensus 546 ~~~~~~s~~f~GE~~~G~Wtl~v~d~~--~~g~l~~~~~~ 583 (586)
++|.||.+.+|||.+.|+|+|+|.|.. ..|.|+..+..
T Consensus 84 ~~~s~~l~~~~ge~~~G~W~L~V~D~~~g~~Gtf~sW~l~ 123 (177)
T COG4935 84 NDQSFMLVQLWGERAEGNWRLEVQDLAGGHTGTFHSWGLK 123 (177)
T ss_pred eeeeeeeeeeccCCCCceEEEEEEecCCCceeEEEEeEEe
Confidence 999999999999999999999999994 68888776654
No 47
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=3.8e-09 Score=120.16 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=93.5
Q ss_pred CchHHHHcCCCCCCCcEEEEEe-cCccCCCcccccCCCCCCcccccCCCCCCCCC---CCCCCCChHHHHHHHHhccCCC
Q psy5372 146 NIVPVYQELNINGAGVNIIIID-DGMEYTHEDIKDSFAPELSYNFNAEKWDITPR---YEDPRNKHGTRCAGELVMKPNN 221 (586)
Q Consensus 146 ~~~~aw~~~~~~G~gv~VaViD-tGid~~Hpdl~~~~~~~~~~~~~~~~~~~~~~---~~~d~~~HGT~vAgiia~~~~n 221 (586)
|+..+++ .+.+|+|++||||| -|-.....|+.- ++-..+-+.|.+. +.....+|+||-+..+.-.
T Consensus 216 nit~l~~-~g~tGkG~tIaIid~yG~p~~~~dl~~-------Fd~~~Gip~~~~~~V~~ig~g~~~~~~g~~E~sLD--- 284 (1174)
T COG4934 216 NITALYE-SGATGKGETIAIIDAYGDPYNNQDLYS-------FDQQYGIPNPILSRVTYIGPGIGSGTGGAEETSLD--- 284 (1174)
T ss_pred ceeeccc-CCCCCCCcEEEEEeccCCcccHHHHHH-------HHHhhCCCCCCceEEEEeCCCCCCCCCccccceee---
Confidence 4455666 78999999999999 565444444321 1111111111000 0003456666665422111
Q ss_pred CCcceeeecCcEEEEEEccCCCchhHHHHHHhhhcCCCCeEEEcCCCCCCCCCCCCCchHHHHHHHHHHHHhccCCCCcE
Q psy5372 222 SKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVL 301 (586)
Q Consensus 222 ~~g~~GVAp~a~l~~~~v~~~~~~~~~~a~~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~Gi~ 301 (586)
-+-..-+||+|+|..+-...........+.........--++-.||+....- ........++++....++.. +|+.
T Consensus 285 VE~s~A~AP~A~I~lvvap~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~---~~~~~~~~~~~d~l~~qasa-eGIT 360 (1174)
T COG4934 285 VEWSHAMAPKANIDLVVAPNPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQ---GPISPGYADLMDLLYEQASA-EGIT 360 (1174)
T ss_pred hhhhhccCccCceEEEEcCCCceehhhHHHHHHHHhhhcccccchhHHHHhc---cCCChHHHHHHHHHHHHhhc-cceE
Confidence 1112457999999998886655555555544433221113333566553211 11111233444444443332 7999
Q ss_pred EEEecCCCCCCCCC----CCCCCCCCCceEEEEee
Q psy5372 302 FVFAAGNGKYNGDN----CAADGYINSIYTIAIAS 332 (586)
Q Consensus 302 ~V~AAGN~g~~~~~----~~~~~~~~~~~vi~Vga 332 (586)
+++|+|+.|...+. .....|+++|+|.+||.
T Consensus 361 i~AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 361 IFAASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EEEecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999999987542 23456888999999999
No 48
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=97.07 E-value=0.00019 Score=58.21 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=32.6
Q ss_pred eEEEEEcCCCCCCCCccccccccccCCCceeEEeecchhhc
Q psy5372 47 HYLFSKKQHNHKTPEETTFETVGLLNDARVIWTQQQFAKHL 87 (586)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~ve~~~~~~~ 87 (586)
.+.|.. .++++++.++++.+++|+++|+|++||||..+++
T Consensus 42 ~~~y~~-~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l 81 (82)
T PF05922_consen 42 LYSYDN-AFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSL 81 (82)
T ss_dssp EEEESS-TSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE
T ss_pred EEEEee-eEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEec
Confidence 344433 5788899999999999999999999999998865
No 49
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=85.79 E-value=5.8 Score=37.27 Aligned_cols=79 Identities=19% Similarity=0.302 Sum_probs=50.3
Q ss_pred eecCCCCceEEEEEecCCCCCCccceeeeeEEEEEEEeCCcccceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeee
Q psy5372 474 TGFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTL 553 (586)
Q Consensus 474 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~v~v~~~~~~~~~g~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~ 553 (586)
..+..+....-+|.++...|... .+.+.+.......|.|++|+|+...-.. .| ... .+...
T Consensus 9 ~~~~~~~~~~gtv~ID~tvG~~T----------~f~v~w~~~~~p~i~L~~P~G~~~~~~~---~d-~~~-----~~~~i 69 (179)
T PF09315_consen 9 LSLSPGEWFTGTVYIDSTVGNNT----------VFTVTWQNSSPPSITLTDPSGTVYTTFT---TD-SNS-----KTARI 69 (179)
T ss_pred EEecCCCeEEeEEEECCCCCCCe----------EEEEEECCCCCceEEEECCCCCEEeeeE---Ec-ccc-----cEEEE
Confidence 34556677778888876655421 2345555557789999999999886511 12 111 12233
Q ss_pred eecCCCCCceEEEEEEEC
Q psy5372 554 KHWGEDPVGEWKFEIFDT 571 (586)
Q Consensus 554 ~f~GE~~~G~Wtl~v~d~ 571 (586)
..-|..-.|+|+++|.+.
T Consensus 70 ~ipg~ae~G~W~y~i~~~ 87 (179)
T PF09315_consen 70 QIPGTAEVGTWTYSITNT 87 (179)
T ss_pred ECCCCcccccEEEEEecC
Confidence 444566699999999655
No 50
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=78.71 E-value=13 Score=30.77 Aligned_cols=57 Identities=16% Similarity=0.292 Sum_probs=33.6
Q ss_pred cccceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEEECCCCC
Q psy5372 514 RRGDVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTKYDG 575 (586)
Q Consensus 514 ~~g~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d~~~~g 575 (586)
....+.|.|.+|+|....-... ......|..... ...-.+...|+|+|++.-..+.+
T Consensus 34 ~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~---~~lp~~~~~G~y~i~~~~~~~~~ 90 (99)
T PF01835_consen 34 ANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGS---FQLPDDAPLGTYTIRVKTDDDGG 90 (99)
T ss_dssp SSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEE---EE--SS---EEEEEEEEETTTTC
T ss_pred cCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEE---EECCCCCCCEeEEEEEEEccCCC
Confidence 4568899999999987654433 012344554333 34556678999999999864433
No 51
>KOG1114|consensus
Probab=78.61 E-value=1.4 Score=50.28 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.3
Q ss_pred CCCCCCcEEEEEecCccCCCccccc
Q psy5372 155 NINGAGVNIIIIDDGMEYTHEDIKD 179 (586)
Q Consensus 155 ~~~G~gv~VaViDtGid~~Hpdl~~ 179 (586)
.|.|+||+|||+|||||..-|-|.-
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~v 101 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQV 101 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCceE
Confidence 6899999999999999998887753
No 52
>PF12975 DUF3859: Domain of unknown function (DUF3859); InterPro: IPR024331 This entry represents a functionally uncharacterised domain, which is found in bacterial proteins.; PDB: 3N6Y_B.
Probab=70.01 E-value=10 Score=33.38 Aligned_cols=47 Identities=32% Similarity=0.482 Sum_probs=23.7
Q ss_pred CCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEEECC
Q psy5372 525 PSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTK 572 (586)
Q Consensus 525 PsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d~~ 572 (586)
|.|-.-.....-.. ....+.++|.|.+-.+--|...|.|++.+...+
T Consensus 69 p~~~~g~~~~~~~~-~v~~~~~~~~~~~f~~~~e~v~G~Wr~~i~~~g 115 (125)
T PF12975_consen 69 PDGDKGDTVEPWQG-EVYVGSNDWDFYTFDTPWEPVPGEWRFTIELDG 115 (125)
T ss_dssp TTS-EEEEEEEEE----TT-S-EEEEEE--SGGG---EEEEEEEEETT
T ss_pred CCCCCCCEECcEEE-EecCCCcceEEEEcCcccccCCceEEEEEEECC
Confidence 45544444332221 234445678888878888999999999998763
No 53
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=61.86 E-value=58 Score=35.45 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=39.8
Q ss_pred EEeCCcccceEEEEEcCCCCEEEeecCCCCCCC-----------------CCCcccceEeeeeecCCCCCceEEEEEEEC
Q psy5372 509 NIEHPRRGDVRIELTAPSGVKSVLMEPRPQDDC-----------------KTGFVDWSILTLKHWGEDPVGEWKFEIFDT 571 (586)
Q Consensus 509 ~~~~~~~g~l~i~l~sPsGT~s~l~~~~~~d~~-----------------~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d~ 571 (586)
.+=......++|.|+||+|..+.....+..... .+-+......... +.....|.|||++...
T Consensus 227 eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~-~~~~~~GiW~i~~~~~ 305 (455)
T cd07478 227 EIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIR-FKNIKPGIWKIRLTGV 305 (455)
T ss_pred EEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEE-ccCCCccceEEEEEec
Confidence 444456788999999999977655443321110 0001111122222 4567889999999976
Q ss_pred C-CCCeee
Q psy5372 572 K-YDGLLD 578 (586)
Q Consensus 572 ~-~~g~l~ 578 (586)
. .+|.++
T Consensus 306 ~~~~g~~~ 313 (455)
T cd07478 306 SITDGRFD 313 (455)
T ss_pred cCCCceEE
Confidence 4 355554
No 54
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=48.80 E-value=28 Score=26.81 Aligned_cols=25 Identities=28% Similarity=0.642 Sum_probs=19.5
Q ss_pred ceEeeeeecCCCCCceEEEEEEECC
Q psy5372 548 WSILTLKHWGEDPVGEWKFEIFDTK 572 (586)
Q Consensus 548 ~~~~s~~f~GE~~~G~Wtl~v~d~~ 572 (586)
|...|.........|.|+++|.|..
T Consensus 30 ~Rt~S~k~~~~~~~G~WrV~V~~~~ 54 (66)
T PF11141_consen 30 WRTWSSKQNFPDQPGDWRVEVVDED 54 (66)
T ss_pred EEEEEEeecCCCCCcCEEEEEEcCC
Confidence 4555666666689999999999885
No 55
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=48.13 E-value=1.9e+02 Score=34.11 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=48.5
Q ss_pred eecCCCCceEEEEEecCCCCCCccceeeeeEEEEEEEeCCcccceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeee
Q psy5372 474 TGFSYASSWQRSFNITPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTL 553 (586)
Q Consensus 474 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~v~v~~~~~~~~~g~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~ 553 (586)
..+..+..+.-++.+++..|... .+.+.|... ...|.|++|+|+. ...-..| . .. .....
T Consensus 495 ~~l~~~~~~~~tv~iDstvG~~T----------~F~vtw~~~-~p~i~l~dP~G~~---~~~~~~d-~---~~--~~a~l 554 (863)
T TIGR00868 495 LTLQNNAWMNGTVPVDSTVGKDT----------FFLITWEFL-KPEIFLQDPSGKS---TSDFLVD-K---LN--KMAYL 554 (863)
T ss_pred eEecCCcEEeeeEEecCCCCCCc----------EEEEEcCCC-CceEEEECCCCCc---cccceEe-e---cc--eEEEE
Confidence 44555555655666666555422 123455543 7899999999996 1111111 0 01 12233
Q ss_pred eecCCCCCceEEEEEEECCCCCeee
Q psy5372 554 KHWGEDPVGEWKFEIFDTKYDGLLD 578 (586)
Q Consensus 554 ~f~GE~~~G~Wtl~v~d~~~~g~l~ 578 (586)
..-|-.-.|+|++++........|.
T Consensus 555 ~ipg~a~~G~W~y~l~~~~~~q~i~ 579 (863)
T TIGR00868 555 QIPGTAKVGTWTYSLQASANPQTLT 579 (863)
T ss_pred EcCCCCccceeEEEEeccCCCceEE
Confidence 4556667999999998765555443
No 56
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=46.89 E-value=17 Score=23.69 Aligned_cols=14 Identities=50% Similarity=0.743 Sum_probs=11.5
Q ss_pred chHHHHHHHHHHHH
Q psy5372 382 AAAPIAAGVLALAL 395 (586)
Q Consensus 382 ~AaP~VAG~aALl~ 395 (586)
.|||.+||+++-+.
T Consensus 14 LAAP~iagIi~s~i 27 (35)
T PF13940_consen 14 LAAPIIAGIIASLI 27 (35)
T ss_pred hHhHHHHHHHHHHH
Confidence 58999999988654
No 57
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.26 E-value=23 Score=31.74 Aligned_cols=35 Identities=31% Similarity=0.271 Sum_probs=27.9
Q ss_pred eeeccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy5372 373 CTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQH 408 (586)
Q Consensus 373 ~~~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~ 408 (586)
....|.|=|= |++|.|++|+++..+-..|+++|..
T Consensus 70 ~~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 70 GTLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred ceEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 3344555554 7999999999999999999999764
No 58
>PRK15019 CsdA-binding activator; Provisional
Probab=39.42 E-value=29 Score=31.39 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=27.6
Q ss_pred eccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy5372 375 CEHSGTSAAAPIAAGVLALALEANPNMTWRDCQH 408 (586)
Q Consensus 375 ~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~ 408 (586)
..+.|.| =|++|-|++||+++.+-..+|+||.+
T Consensus 77 ~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 77 MHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3444554 58999999999999999999999876
No 59
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=38.07 E-value=28 Score=31.15 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=28.5
Q ss_pred eccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHH
Q psy5372 375 CEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHI 409 (586)
Q Consensus 375 ~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~ 409 (586)
..+.|.| =|++|-|++||+++.+-..|+++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 4455666 489999999999999999999998754
No 60
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=35.75 E-value=32 Score=30.78 Aligned_cols=33 Identities=30% Similarity=0.355 Sum_probs=27.7
Q ss_pred eccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHH
Q psy5372 375 CEHSGTSAAAPIAAGVLALALEANPNMTWRDCQH 408 (586)
Q Consensus 375 ~~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~ 408 (586)
..+.|.| =|++|-|++||+++.+-..||+||.+
T Consensus 67 ~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 67 IELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 3445555 58999999999999999999999875
No 61
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=35.67 E-value=2.2e+02 Score=23.20 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=28.9
Q ss_pred cccceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEEECC
Q psy5372 514 RRGDVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTK 572 (586)
Q Consensus 514 ~~g~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d~~ 572 (586)
-.++|++.|++|+|....+.- .| ..+|...-+|.. ...|.++|.|.-.+
T Consensus 30 G~~~~~v~i~~p~g~~~~~~v---~d-~~dGty~v~y~P------~~~G~~~i~V~~~g 78 (93)
T smart00557 30 GGGELEVEVTGPSGKKVPVEV---KD-NGDGTYTVSYTP------TEPGDYTVTVKFGG 78 (93)
T ss_pred CCCcEEEEEECCCCCeeEeEE---Ee-CCCCEEEEEEEe------CCCEeEEEEEEECC
Confidence 347899999999996544311 11 233433223322 45688888887553
No 62
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=32.63 E-value=46 Score=29.25 Aligned_cols=33 Identities=30% Similarity=0.270 Sum_probs=26.4
Q ss_pred ccCCCCchHHHHHHHHHHHHhhCCCCCHHHHHHH
Q psy5372 376 EHSGTSAAAPIAAGVLALALEANPNMTWRDCQHI 409 (586)
Q Consensus 376 ~~~GTS~AaP~VAG~aALl~~~~p~lt~~~v~~~ 409 (586)
.+.|.|= |++|-|++||++..+-..|++||.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4555554 67999999999999999999998764
No 63
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=28.62 E-value=3e+02 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=24.4
Q ss_pred EEEEeCCcccceEEEEEcCCCCEEEeecCCC
Q psy5372 507 TLNIEHPRRGDVRIELTAPSGVKSVLMEPRP 537 (586)
Q Consensus 507 ~~~~~~~~~g~l~i~l~sPsGT~s~l~~~~~ 537 (586)
++.++....|-|.|..+.++|....|..++-
T Consensus 10 ~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn~~ 40 (83)
T PF14326_consen 10 RFRVTSNRDGYLYLFYIDADGKVTLLFPNRY 40 (83)
T ss_pred EEEEEeCCCeEEEEEEECCCCCEEEEecCcc
Confidence 3445557888999999999999998877543
No 64
>PRK10301 hypothetical protein; Provisional
Probab=27.60 E-value=3.2e+02 Score=23.89 Aligned_cols=54 Identities=11% Similarity=0.089 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEEECCCCCe
Q psy5372 517 DVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIFDTKYDGL 576 (586)
Q Consensus 517 ~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~d~~~~g~ 576 (586)
-..|+|..|+|............ .+ ...+++..-..-..|+++|+-+=.+.||+
T Consensus 60 ~s~i~v~~~~g~~v~~~~~~~~~--~~----~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 60 FSGATITGPKQENIKTLPAKRNE--QD----QKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred ccEEEEEcCCCCEeccCCccccC--CC----CcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 44688888888764432211111 11 12233333334578998888887665554
No 65
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=27.31 E-value=57 Score=24.06 Aligned_cols=37 Identities=27% Similarity=0.211 Sum_probs=23.3
Q ss_pred eccCCCCchHHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q psy5372 375 CEHSGTSAAAPIAAGVLA------LALEANPNMTWRDCQHILA 411 (586)
Q Consensus 375 ~~~~GTS~AaP~VAG~aA------Ll~~~~p~lt~~~v~~~L~ 411 (586)
-.+.||-...-.+....+ -+++.+|.|+.+||++.|.
T Consensus 12 P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 12 PVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp -EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred ceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 345677666666655533 4556799999999999885
No 66
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=26.70 E-value=2.8e+02 Score=21.03 Aligned_cols=45 Identities=13% Similarity=0.231 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCEEEeecCCCCCCCCCCcccceEeeeeecCCCCCceEEEEEE
Q psy5372 517 DVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDPVGEWKFEIF 569 (586)
Q Consensus 517 ~l~i~l~sPsGT~s~l~~~~~~d~~~~g~~~~~~~s~~f~GE~~~G~Wtl~v~ 569 (586)
|+.|.|..++|....-...+. ...+.. +..+.. -...|+|-|+|.
T Consensus 25 d~dl~l~~~~g~~~~~~d~~~---~~~~~~--~~i~~~---~~~~GtYyi~V~ 69 (70)
T PF04151_consen 25 DADLYLYDSNGNSLASYDDSS---QSGGND--ESITFT---APAAGTYYIRVY 69 (70)
T ss_dssp SEEEEEEETTSSSCEECCCCT---CETTSE--EEEEEE---ESSSEEEEEEEE
T ss_pred CeEEEEEcCCCCchhhheecC---CCCCCc--cEEEEE---cCCCEEEEEEEE
Confidence 889999999986322111111 112221 222211 189999999985
No 67
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=24.01 E-value=1.1e+02 Score=20.88 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=19.2
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcC
Q psy5372 391 LALALEANPNMTWRDCQHILAWTS 414 (586)
Q Consensus 391 aALl~~~~p~lt~~~v~~~L~~tA 414 (586)
+--|++.+|+++...|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 456788999999999999997654
No 68
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=23.31 E-value=1.2e+02 Score=20.72 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=21.3
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcC
Q psy5372 390 VLALALEANPNMTWRDCQHILAWTS 414 (586)
Q Consensus 390 ~aALl~~~~p~lt~~~v~~~L~~tA 414 (586)
.+..|++.+|+++...|+..|....
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 5667889999999999999998643
No 69
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=20.75 E-value=69 Score=18.71 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHhh
Q psy5372 381 SAAAPIAAGVLALALEA 397 (586)
Q Consensus 381 S~AaP~VAG~aALl~~~ 397 (586)
...||++.|++-.+.+.
T Consensus 3 ~iIaPi~VGvvl~l~~~ 19 (21)
T PF13955_consen 3 TIIAPIVVGVVLTLFDH 19 (21)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehhhHHHHHHHHHHHh
Confidence 45799999999887664
Done!