RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5372
(586 letters)
>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like,
Peptidase S8 family domain in Protein convertases.
Protein convertases, whose members include furins and
kexins, are members of the peptidase S8 or Subtilase
clan of proteases. They have an Asp/His/Ser catalytic
triad that is not homologous to trypsin. Kexins are
involved in the activation of peptide hormones, growth
factors, and viral proteins. Furin cleaves cell surface
vasoactive peptides and proteins involved in
cardiovascular tissue remodeling in the TGN, at cell
surface, or in endosomes but rarely in the ER. Furin
also plays a key role in blood pressure regulation
though the activation of transforming growth factor
(TGF)-beta. High specificity is seen for cleavage after
dibasic (Lys-Arg or Arg-Arg) or multiple basic residues
in protein convertases. There is also strong sequence
conservation.
Length = 297
Score = 402 bits (1036), Expect = e-138
Identities = 154/298 (51%), Positives = 209/298 (70%), Gaps = 5/298 (1%)
Query: 120 FTDEWWPMQWYEQDYRLSNSSKKLDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKD 179
D +P QWY ++ + + LDLN+ P + E I G GV + ++DDG+E TH D+KD
Sbjct: 1 PNDPLFPYQWYLKNTGQAGGTPGLDLNVTPAW-EQGITGKGVTVAVVDDGLEITHPDLKD 59
Query: 180 SFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKL 239
++ PE SY+FN D TPRY+D N HGTRCAGE+ NN CGVGV GA++GG+++
Sbjct: 60 NYDPEASYDFNDNDPDPTPRYDDD-NSHGTRCAGEIAAVGNNGICGVGVAPGAKLGGIRM 118
Query: 240 LDGETTDLIESKALQFGLDKVDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKG 299
LDG+ TD++E+++L D +DIYS SWGP DDGK++DGPG L++ A++ G+ GR GKG
Sbjct: 119 LDGDVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKG 178
Query: 300 VLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGIS 359
+FV+AAGNG GDNC DGY NSIYTI++++ +G YSE + ++A+A SGG
Sbjct: 179 SIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGVRASYSEVGSSVLASAPSGGSG 238
Query: 360 DPV-KIITTDVHNTCTC--EHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTS 414
+P I+TTD+ C C H+GTSAAAP+AAGV+AL LEANPN+TWRD QHILA T+
Sbjct: 239 NPEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTA 296
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 196 bits (500), Expect = 2e-58
Identities = 86/297 (28%), Positives = 125/297 (42%), Gaps = 36/297 (12%)
Query: 165 IIDDGMEYTHEDIK---DSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPNN 221
++D G++ H D+ A Y+F D P +D N HGT AG + NN
Sbjct: 4 VLDTGIDVNHPDLSGRYIGLAYRNGYDFVDNDPD--PTPDDDNNGHGTHVAGIIAAGDNN 61
Query: 222 SKCGVGVCYGARVGGVKLLDGE-TTDLIESKALQFGL---DKVDIYSGSWGPPDDGKSMD 277
GVGV A++ VK+L G TD + A+++ + + + + S GP D
Sbjct: 62 GSGGVGVAPNAKLESVKVLPGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDG----- 116
Query: 278 GPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDN--CAADGYINSIYTIAIASARE 335
P +AID G KG LFV AAGNG DN + N+I I + + E
Sbjct: 117 -PPSSWSSAIDELAVNGADNKGSLFVVAAGNGGDYADNNPVSDPASANNI--ITVGAVTE 173
Query: 336 DGQSPFYSEECT---GLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLA 392
+G +S G+ + G + D HSGTS AAP+ AG A
Sbjct: 174 NGTIADFSNYGGPVDGIKPDIVAPGGNILSSGPGGD--LGGYDSHSGTSMAAPLVAGAAA 231
Query: 393 LALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLV 449
L L ANP++T + +L T+ + S +G+GL+N K V
Sbjct: 232 LLLSANPSLTPETLRALLVTTATDLGSMGLD-----------RS-FGYGLLNLGKAV 276
>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53
families. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) family include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53, it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium;
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 241
Score = 122 bits (307), Expect = 1e-31
Identities = 75/258 (29%), Positives = 105/258 (40%), Gaps = 22/258 (8%)
Query: 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPN 220
V + +ID G++ H D+ F + + + P D N HGT AG + N
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDG-GNDDDDNENGPTDPDDGNGHGTHVAGIIAASAN 59
Query: 221 NSKCGVGVCYGARVGGVKLLDGETTDLIES--KALQF--GLDKVDIYSGSWGPPDDGKSM 276
N GVGV GA++ VK+LDG+ + A+ + D+ + S G
Sbjct: 60 NGG-GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLG-------- 110
Query: 277 DGPGKLSKAAIDRGIREGRQGKGVLFVFAAGN-GKYNGDNCAADGYINSIYTIAIASARE 335
GPG +A+ I GVL V AAGN G G N ++ + A R+
Sbjct: 111 -GPGSPPSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVG-AVDRD 168
Query: 336 DGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALAL 395
+ S G+ A G I + SGTS AAPI AGV AL L
Sbjct: 169 GTPASPSSNGGAGVDIAAPGGDILS-----SPTTGGGGYATLSGTSMAAPIVAGVAALLL 223
Query: 396 EANPNMTWRDCQHILAWT 413
ANP++T + L T
Sbjct: 224 SANPDLTPAQVKAALLST 241
>gnl|CDD|201820 pfam01483, P_proprotein, Proprotein convertase P-domain. A unique
feature of the eukaryotic subtilisin-like proprotein
convertases is the presence of an additional highly
conserved sequence of approximately 150 residues (P
domain) located immediately downstream of the catalytic
domain.
Length = 87
Score = 110 bits (276), Expect = 4e-29
Identities = 39/75 (52%), Positives = 55/75 (73%)
Query: 501 LEHVHATLNIEHPRRGDVRIELTAPSGVKSVLMEPRPQDDCKTGFVDWSILTLKHWGEDP 560
LEHV ++NI H RRGD+RI LT+PSG +SVL+ RP+DD ++GFV+W+ +++ HWGE+
Sbjct: 1 LEHVQVSVNITHTRRGDLRITLTSPSGTRSVLLNRRPRDDSRSGFVNWTFMSVHHWGENA 60
Query: 561 VGEWKFEIFDTKYDG 575
VG W E+ D G
Sbjct: 61 VGTWTLEVEDKNNPG 75
>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain,
uncharacterized subfamily 15. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 242
Score = 113 bits (286), Expect = 1e-28
Identities = 78/261 (29%), Positives = 114/261 (43%), Gaps = 33/261 (12%)
Query: 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPN 220
V + IID G++ H D+ P+L +N + + HGT CAG N
Sbjct: 1 VVVAIIDTGVDLNHPDLSGK--PKLVPGWNFVSNNDPT---SDIDGHGTACAGVAAAVGN 55
Query: 221 NSKCGVGVCYGARVGGVKLLDGE--TTDLIESKALQFGLDK-VDIYSGSWGPPDDGKSMD 277
N GV GA++ V++ D ++A+ + D D+ S SWG D +S+
Sbjct: 56 NGLGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESI- 114
Query: 278 GPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDG 337
+AID GR GKG + +FAAGN + + GY + IA+A+ +
Sbjct: 115 ------SSAIDNAATYGRNGKGGVVLFAAGNSGRSVSS----GYAANPSVIAVAATDSND 164
Query: 338 QSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEH--------SGTSAAAPIAAG 389
YS + A GI TT ++ SGTS A+P+AAG
Sbjct: 165 ARASYSNYGNYVDLVAPGVGIW------TTGTGRGSAGDYPGGGYGSFSGTSFASPVAAG 218
Query: 390 VLALALEANPNMTWRDCQHIL 410
V AL L ANPN+T + + IL
Sbjct: 219 VAALILSANPNLTPAEVEDIL 239
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain
in Subtilisin-like proteins. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 259
Score = 100 bits (252), Expect = 7e-24
Identities = 72/269 (26%), Positives = 104/269 (38%), Gaps = 55/269 (20%)
Query: 165 IIDDGMEYTHEDIKDSFAPELSYNFNAEKWD-------------------ITPRYEDPRN 205
+ID G++Y H D+KD+ + N + N
Sbjct: 8 VIDTGVDYNHPDLKDN----MWVNPGEIPGNGIDDDGNGYVDDIYGWNFVNNDNDPMDDN 63
Query: 206 KHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD----GETTDLIESKALQFGLDK-V 260
HGT AG + NN GV + ++ +K L G T+D I KA+ + +D
Sbjct: 64 GHGTHVAGIIGAVGNNGIGIAGVAWNVKIMPLKFLGADGSGTTSDAI--KAIDYAVDMGA 121
Query: 261 DIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADG 320
I + SWG GP + + AI R I G+LFV AAGN N D
Sbjct: 122 KIINNSWGGG-------GPSQALRDAIARAI-----DAGILFVAAAGNDGTNNDKTPT-- 167
Query: 321 Y---INSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDP-VKIITTDVHNTCTCE 376
Y + I++A+ + +S G + ++ P V I++T
Sbjct: 168 YPASYDLDNIISVAATDSNDALASFS--NYG----KKTVDLAAPGVDILSTSP-GGGYGY 220
Query: 377 HSGTSAAAPIAAGVLALALEANPNMTWRD 405
SGTS A P AG AL L NPN+T
Sbjct: 221 MSGTSMATPHVAGAAALLLSLNPNLTAAQ 249
>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like,
Peptidase S8 family domain in Autotransporter serine
proteases. Autotransporter serine proteases belong to
Peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Autotransporters are a superfamily of outer
membrane/secreted proteins of gram-negative bacteria.
The presence of these subtilisin-like domains in these
autotransporters are may enable them to be
auto-catalytic and may also serve to allow them to act
as a maturation protease cleaving other outer membrane
proteins at the cell surface.
Length = 267
Score = 94.7 bits (236), Expect = 1e-21
Identities = 65/273 (23%), Positives = 94/273 (34%), Gaps = 30/273 (10%)
Query: 157 NGAGVNIIIIDDGMEYTHEDIKDSFAPELSY-NFNAEKWDITPRYEDPRNKHGTRCAGEL 215
GAGV + +ID G++ +H FA +S ++ D + HGT AG +
Sbjct: 1 TGAGVKVGVIDSGIDLSH----PEFAGRVSEASYYVAVNDAGYASNGDGDSHGTHVAGVI 56
Query: 216 VMKPNNSKCGVGVCYGARVGGVKLLDGETTDLIESKAL------QFGLDKVDIYSGSWGP 269
+ GV A + + S A V I + SWG
Sbjct: 57 AAARDGGGMH-GVAPDATLYSARASAS--AGSTFSDADIAAAYDFLAASGVRIINNSWGG 113
Query: 270 PDDGKSMDGPGKLSKAAID---RGIREGRQGKGVLFVFAAGNGKY--NGDNCAADGYI-- 322
++ K S A G LFVFAAGN AA Y+
Sbjct: 114 NPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEP 173
Query: 323 ---NSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDP-VKIITTDVHNTCTCEH- 377
IA+ + +G YS +A + ++ P I +TD
Sbjct: 174 ELEGGW--IAVVAVDPNGTIASYSYSNRCGVAANWC--LAAPGENIYSTDPDGGNGYGRV 229
Query: 378 SGTSAAAPIAAGVLALALEANPNMTWRDCQHIL 410
SGTS AAP +G AL + P +T + L
Sbjct: 230 SGTSFAAPHVSGAAALLAQKFPWLTADQVRQTL 262
>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family
domain in Subtilisin proteins. This group is composed
of many different subtilisins: Pro-TK-subtilisin,
subtilisin Carlsberg, serine protease Pb92 subtilisin,
and BPN subtilisins just to name a few.
Pro-TK-subtilisin is a serine protease from the
hyperthermophilic archaeon Thermococcus kodakaraensis
and consists of a signal peptide, a propeptide, and a
mature domain. TK-subtilisin is matured from
pro-TK-subtilisin upon autoprocessing and degradation of
the propeptide. Unlike other subtilisins though, the
folding of the unprocessed form of pro-TK-subtilisin is
induced by Ca2+ binding which is almost completed prior
to autoprocessing. Ca2+ is required for activity unlike
the bacterial subtilisins. The propeptide is not
required for folding of the mature domain unlike the
bacterial subtilases because of the stability produced
from Ca2+ binding. Subtilisin Carlsberg is extremely
similar in structure to subtilisin BPN'/Novo thought it
has a 30% difference in amino acid sequence. The
substrate binding regions are also similar and 2
possible Ca2+ binding sites have been identified
recently. Subtilisin Carlsberg possesses the highest
commercial importance as a proteolytic additive for
detergents. Serine protease Pb92, the serine protease
from the alkalophilic Bacillus strain PB92, also
contains two calcium ions and the overall folding of
the polypeptide chain closely resembles that of the
subtilisins. Members of the peptidases S8 and S35 clan
include endopeptidases, exopeptidases and also a
tripeptidyl-peptidase. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The S53
family contains a catalytic triad Glu/Asp/Ser. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 229
Score = 80.3 bits (199), Expect = 4e-17
Identities = 70/260 (26%), Positives = 112/260 (43%), Gaps = 41/260 (15%)
Query: 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKP 219
GV + +ID G++ +H D+K + NF + + Y+D N HGT AG +
Sbjct: 1 GVKVAVIDTGIDSSHPDLKLNIVG--GANFTGDDNND---YQD-GNGHGTHVAGIIAALD 54
Query: 220 NNSKCGVGVCYGARVGGVKLLD----GETTDLIESKALQFGLD-KVDIYSGSWGPPDDGK 274
N VGV A + VK+L+ G +D+I +++ ++ +DI + S G P D
Sbjct: 55 NGVG-VVGVAPEADLYAVKVLNDDGSGTYSDII--AGIEWAIENGMDIINMSLGGPSDSP 111
Query: 275 SMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIY--TIAIAS 332
++ + AI + G+L V AAGN +G+ ++ Y Y IA+ +
Sbjct: 112 AL-------REAIKKAYA-----AGILVVAAAGN---SGNGDSSYDYPAK-YPSVIAVGA 155
Query: 333 AREDGQSPFYSEECTGLIATAYSGGISDP-VKIITTDVHNTCTCEHSGTSAAAPIAAGVL 391
+ +S + A P V I++T +N SGTS A P AGV
Sbjct: 156 VDSNNNRASFSSTGPEVELAA-------PGVDILSTYPNNDYA-YLSGTSMATPHVAGVA 207
Query: 392 ALALEANPNMTWRDCQHILA 411
AL P +T + L
Sbjct: 208 ALVWSKRPELTNAQVRQALN 227
>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain
in Thermitase-like proteins. Thermitase is a
non-specific, trypsin-related serine protease with a
very high specific activity. It contains a subtilisin
like domain. The tertiary structure of thermitase is
similar to that of subtilisin BPN'. It contains a
Asp/His/Ser catalytic triad. Members of the peptidases
S8 (subtilisin and kexin) and S53 (sedolisin) clan
include endopeptidases and exopeptidases. The S8 family
has an Asp/His/Ser catalytic triad similar to that found
in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. Serine acts as a nucleophile, aspartate as an
electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic
acid residue that acts as an electrophile is quite
different. In S53 the it follows glutamic acid, while
in S8 it precedes histidine. The stability of these
enzymes may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 260
Score = 78.8 bits (195), Expect = 2e-16
Identities = 69/252 (27%), Positives = 101/252 (40%), Gaps = 40/252 (15%)
Query: 155 NINGAGVNIIIIDDGMEYTHED-IKDSFAPELSYNFNAEKWDITPRYEDPR--NKHGTRC 211
G+GV + ++D G++ TH D +K F L Y+F D N HGT
Sbjct: 24 ITGGSGVTVAVVDTGVDPTHPDLLKVKFV--LGYDF-------VDNDSDAMDDNGHGTHV 74
Query: 212 AGELVMKPNNSKCGVGVCYGARVGGVKLLD--GETTDLIESKALQFGLDK-VDIYSGSWG 268
AG + NN GV A++ VK+LD G + + +++ DK + + S G
Sbjct: 75 AGIIAAATNNGTGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLG 134
Query: 269 PPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSI-YT 327
G L A+ I KGV+ V AAGN + ++ Y +
Sbjct: 135 -----------GGLGSTALQEAINYAWN-KGVVVVAAAGN-----EGVSSVSYPAAYPGA 177
Query: 328 IAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIA 387
IA+A+ +D + +S + +A GGI D SGTS A P
Sbjct: 178 IAVAATDQDDKRASFSNYGKWVDVSAPGGGI--LSTTPDGDYAY-----MSGTSMATPHV 230
Query: 388 AGVLALALEANP 399
AGV AL P
Sbjct: 231 AGVAALLYSQGP 242
>gnl|CDD|227271 COG4935, COG4935, Regulatory P domain of the subtilisin-like
proprotein convertases and other proteases
[Posttranslational modification, protein turnover,
chaperones].
Length = 177
Score = 76.0 bits (187), Expect = 5e-16
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 489 TPCSDTVDEVKYLEHVHATLNIEHPRRGDVRIELTAPSGVK--SVLMEPRPQDDCKTGFV 546
S +V + +++ V ++I H RGD+RI L +PSG S L R DD G+
Sbjct: 25 ISSSFSVADANFIKDVTVRVDITHEYRGDLRITLISPSGQGILSNLTLGRRYDDDSQGYN 84
Query: 547 DWSILTLKHWGEDPVGEWKFEIFDT 571
D S + ++ WGE G W+ E+ D
Sbjct: 85 DQSFMLVQLWGERAEGNWRLEVQDL 109
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 508
Score = 78.1 bits (191), Expect = 4e-15
Identities = 64/258 (24%), Positives = 97/258 (37%), Gaps = 16/258 (6%)
Query: 150 VYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGT 209
V + G GV + +ID G++ +H D+ S + D P + D HGT
Sbjct: 133 VANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA----GGDFVDGDPEPPFLDDNG-HGT 187
Query: 210 RCAGELVMKP-NNSKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGSWG 268
AG + +N GV GA++ VK+L S L + ++ + G
Sbjct: 188 HVAGTIAAVIFDNGAGVAGVAPGAKLLLVKVLGSGGG----SGELSDVAEGIEGAANLGG 243
Query: 269 PPDD-GKSMDGPGKLSK-AAIDRGIREGRQGKGVLFVFAAGNGKYNGDNC--AADGYINS 324
P D S+ G S A+ + GV+ V AAGN N A +
Sbjct: 244 PADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPA 303
Query: 325 IYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCE--HSGTSA 382
IA+ + +S + + + G++ + SGTS
Sbjct: 304 PNVIAVGALDLSDTVASFSNDGSPTGVDIAAPGVNILSLSAVNTLPGDGADYVTLSGTSM 363
Query: 383 AAPIAAGVLALALEANPN 400
AAP +GV AL L ANPN
Sbjct: 364 AAPHVSGVAALVLSANPN 381
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family
domain in Vpr-like proteins. The maturation of the
peptide antibiotic (lantibiotic) subtilin in Bacillus
subtilis ATCC 6633 includes posttranslational
modifications of the propeptide and proteolytic cleavage
of the leader peptide. Vpr was identified as one of the
proteases, along with WprA, that are capable of
processing subtilin. Asp, Ser, His triadPeptidases S8
or Subtilases are a serine endo- and exo-peptidase clan.
They have an Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of subtilases may be enhanced by
calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity. Some
members of this clan contain disulfide bonds. These
enzymes can be intra- and extracellular, some function
at extreme temperatures and pH values.
Length = 295
Score = 75.8 bits (187), Expect = 4e-15
Identities = 68/278 (24%), Positives = 108/278 (38%), Gaps = 54/278 (19%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELS----YNFNAEKWDI--TPRYEDP-------- 203
G GV + +ID G++YTH D+ P Y+F + +D T Y P
Sbjct: 1 GKGVKVAVIDTGIDYTHPDLGGPGFPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGD 60
Query: 204 RNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD----GETTDLIES--KALQFGL 257
HGT AG + N GV A + K+L G T +I + +A+ G+
Sbjct: 61 ATGHGTHVAGIIAGNGVNVGTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGM 120
Query: 258 DKVDIYSGS-WGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNC 316
D +++ GS PDD AI+ ++ G V+ V AAGN
Sbjct: 121 DVINLSLGSSVNGPDD---------PDAIAINNAVKAG-----VVVVAAAGNSGPAPYTI 166
Query: 317 AADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDP-----------VKII 365
+ S T+ ++ + ++ + ++ G + V I+
Sbjct: 167 GSPATAPSAITVGASTVADVAEADT-------VGPSSSRGPPTSDSAIKPDIVAPGVDIM 219
Query: 366 TTDV-HNTCTCEHSGTSAAAPIAAGVLALALEANPNMT 402
+T T SGTS AAP AG AL +A+P+ +
Sbjct: 220 STAPGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWS 257
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain,
uncharacterized subfamily 1. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 264
Score = 69.2 bits (170), Expect = 5e-13
Identities = 66/293 (22%), Positives = 105/293 (35%), Gaps = 68/293 (23%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKD-SFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGEL- 215
G G+ + ++D G++ H D N + T Y+D N HGT AG +
Sbjct: 1 GKGITVAVLDTGIDAPHPDFDGRIIRFADFVNTVNGR---TTPYDD--NGHGTHVAGIIA 55
Query: 216 --VMKPNNSKCGVGVCYGARVGGVKLLD----GETTDLIESKALQFGLDKVDIY------ 263
N GV GA + GVK+LD G +D+I + + ++ + Y
Sbjct: 56 GSGRASNGKYKGV--APGANLVGVKVLDDSGSGSESDII--AGIDWVVENNEKYNIRVVN 111
Query: 264 ---SGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADG 320
P + A++R G ++ V AAGN + G
Sbjct: 112 LSLGAPPDPSYGEDPLC-------QAVERLWDAG-----IVVVVAAGNSGPGPGTITSPG 159
Query: 321 YINSIYTIAIASAREDGQSPFYSEECTGLIATAYSG------GISDP------VKII--- 365
NS I + + ++G + +S G P I+
Sbjct: 160 --NSPKVITVGAVDDNGPHDDG--------ISYFSSRGPTGDGRIKPDVVAPGENIVSCR 209
Query: 366 TTDVHNTCT-----CEHSGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWT 413
+ + E SGTS A P +G +AL L+ANP +T + + IL T
Sbjct: 210 SPGGNPGAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDT 262
>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family
domain in Fervidolysin. Fervidolysin found in
Fervidobacterium pennivorans is an extracellular
subtilisin-like keratinase. It is contains a signal
peptide, a propeptide, and a catalytic region. The
tertiary structure of fervidolysin is similar to that of
subtilisin. It contains a Asp/His/Ser catalytic triad
and is a member of the peptidase S8 (subtilisin and
kexin) family. The catalytic triad is similar to that
found in trypsin-like proteases, but it does not share
their three-dimensional structure and are not homologous
to trypsin. Serine acts as a nucleophile, aspartate as
an electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic acid
residue that acts as an electrophile is quite different.
In S53, it follows glutamic acid, while in S8 it
precedes histidine. The stability of these enzymes may
be enhanced by calcium; some members have been shown to
bind up to 4 ions via binding sites with different
affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 273
Score = 68.7 bits (168), Expect = 7e-13
Identities = 69/267 (25%), Positives = 99/267 (37%), Gaps = 40/267 (14%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKDSFAPE------LSYNFNAEKWDITPRYEDPRNKHGTRC 211
G G+ + ++D G++ TH D++ + + YNF DI HGT
Sbjct: 9 GPGIIVAVVDTGVDGTHPDLQGNGDGDGYDPAVNGYNFVPNVGDI-DNDVSVGGGHGTHV 67
Query: 212 AGELVMKPNNSKCGVGVCYGARVG----GVKLL-------DGETTDLIESKALQFGLDK- 259
AG + NN G GV A G GVK++ D + A+ + D
Sbjct: 68 AGTIAAVNNN---GGGVGGIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNG 124
Query: 260 VDIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQG--KGVLFVFAAGNGKYNGDNCA 317
I SWG G L K A D I G + VF+AGN +
Sbjct: 125 AVILQNSWG----GTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGN------SYT 174
Query: 318 ADGYINSIY--TIAIASAREDGQSPFYSEECTGLIATAYSGG--ISDPVKIITTDVHNTC 373
+ + Y IA+A+ + +S + A G +S K+ N
Sbjct: 175 DEHRFPAAYPGVIAVAALDTNDNKASFSNYGRWVDIAAPGVGTILSTVPKLDGDGGGNYE 234
Query: 374 TCEHSGTSAAAPIAAGVLALALEANPN 400
SGTS AAP +GV AL L P+
Sbjct: 235 Y--LSGTSMAAPHVSGVAALVLSKFPD 259
>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family
domain in ProteinaseK-like proteins. The peptidase S8
or Subtilase clan of proteases have a Asp/His/Ser
catalytic triad that is not homologous to trypsin. This
CD contains several members of this clan including:
PCSK9 (Proprotein convertase subtilisin/kexin type 9),
Proteinase_K, Proteinase_T, and other subtilisin-like
serine proteases. PCSK9 posttranslationally regulates
hepatic low-density lipoprotein receptors (LDLRs) by
binding to LDLRs on the cell surface, leading to their
degradation. The binding site of PCSK9 has been
localized to the epidermal growth factor-like repeat A
(EGF-A) domain of the LDLR. Characterized Proteinases K
are secreted endopeptidases with a high degree of
sequence conservation. Proteinases K are not
substrate-specific and function in a wide variety of
species in different pathways. It can hydrolyze keratin
and other proteins with subtilisin-like specificity. The
number of calcium-binding motifs found in these differ.
Proteinase T is a novel proteinase from the fungus
Tritirachium album Limber. The amino acid sequence of
proteinase T as deduced from the nucleotide sequence is
about 56% identical to that of proteinase K.
Length = 255
Score = 67.5 bits (166), Expect = 2e-12
Identities = 74/288 (25%), Positives = 109/288 (37%), Gaps = 71/288 (24%)
Query: 135 RLSNSSKKLDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFA--PELSYNFNAE 192
R+S LD Y + G+GV++ ++D G+ TH + F +F
Sbjct: 5 RISQRDLPLD----GTYYYDSSTGSGVDVYVLDTGIRTTHVE----FGGRAIWGADFVGG 56
Query: 193 KWDITPRYEDPRNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD----GETTDLI 248
D D N HGT AG V K GV A + VK+LD G + +I
Sbjct: 57 DPD-----SDC-NGHGTHVAG-TVG----GK-TYGVAKKANLVAVKVLDCNGSGTLSGII 104
Query: 249 ESKALQFGLDKV--DIYSG--------SWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGK 298
GL+ V D S G ++D AA+ +
Sbjct: 105 A------GLEWVANDATKRGKPAVANMSLGGGAS-TALD-------AAVAAAVN-----A 145
Query: 299 GVLFVFAAGNGKYNGDNCA---ADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYS 355
GV+ V AAGN N D C A ++ I + + D +S G ++
Sbjct: 146 GVVVVVAAGN--SNQDACNYSPA----SAPEAITVGATDSDDARASFS--NYGSCVDIFA 197
Query: 356 GGISDPVKIITTDV-HNTCTCEHSGTSAAAPIAAGVLALALEANPNMT 402
G V I++ + +T T SGTS AAP AG+ A L P+++
Sbjct: 198 PG----VDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDLS 241
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain,
uncharacterized subfamily 5. gap in seq This family is
a member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 312
Score = 64.5 bits (158), Expect = 3e-11
Identities = 85/321 (26%), Positives = 123/321 (38%), Gaps = 56/321 (17%)
Query: 152 QELNINGAGVNIIIIDDGMEYTHEDIKDSFAP----ELSYNFNAEKWDIT----PRYEDP 203
I G GV + ++D G++YTH + F P Y+F + +D T P +DP
Sbjct: 6 HAEGITGKGVKVAVVDTGIDYTHPALGGCFGPGCKVAGGYDFVGDDYDGTNPPVPD-DDP 64
Query: 204 --RNKHGTRCAGELVMKPNNSKCGVGVCYGARVGGVKLLD--GETTDLIESKALQFGL-D 258
HGT AG + PN GV A +G ++ G TT+ A D
Sbjct: 65 MDCQGHGTHVAGIIAANPNAYGF-TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYED 123
Query: 259 KVDIYSGSWGPPDDGKSMDGPGKLSKAA----IDRGIREGRQGKGVLFVFAAGNGKYNGD 314
D+ + S G GP S+ R I + GV+ AAGN G
Sbjct: 124 GADVITASLG---------GPSGWSEDPWAVVASR-IVD----AGVVVTIAAGNDGERGP 169
Query: 315 NCAADGYINSIYTIAIASAREDGQSPFYS----EECTGLIATAYSGGISDPVKIITTDVH 370
A+ + IA+AS S F S E A GG I++T
Sbjct: 170 FYASSP-ASGRGVIAVASV----DSYFSSWGPTNELYLKPDVAAPGG-----NILSTYPL 219
Query: 371 NTCTCE-HSGTSAAAPIAAGVLALALEA-NPNMTWRDCQHILAWTSEREPLSHVSGWERN 428
SGTS A P AG AL ++A + ++ + + +LA T+ +PL G
Sbjct: 220 AGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTA--KPLPWSDG---T 274
Query: 429 ARDLWFHSAY--GFGLINTFK 447
+ G GL+N +K
Sbjct: 275 SALPDLAPVAQQGAGLVNAYK 295
>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family
domain in BacillopeptidaseF-like proteins. Bacillus
subtilis produces and secretes proteases and other types
of exoenzymes at the end of the exponential phase of
growth. The ones that make up this group is known as
bacillopeptidase F, encoded by bpr, a serine protease
with high esterolytic activity which is inhibited by
PMSF. Like other members of the peptidases S8 family
these have a Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of these enzymes may be enhanced
by calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity.
Length = 264
Score = 62.4 bits (152), Expect = 8e-11
Identities = 71/271 (26%), Positives = 104/271 (38%), Gaps = 54/271 (19%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAE-----KWDITPRYEDPRNKHGTRCA 212
G G+ + ID G+++TH +K+ + + + + TP D N HGT
Sbjct: 1 GTGIVVANIDTGVDWTHPALKNKYRGWGGGSADHDYNWFDPVGNTPLPYDD-NGHGTHTM 59
Query: 213 GELVMKPNNSKCGVGVCYGARVGGVKLLD---GETTDLIESKALQFGL------------ 257
G +V + +GV GAR + LD G D + Q+ L
Sbjct: 60 GTMVGN-DGDGQQIGVAPGARWIACRALDRNGGNDADYLR--CAQWMLAPTDSAGNPADP 116
Query: 258 DKV-DIYSGSWG-PPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDN 315
D D+ + SWG P D + + +AA G+ VFAAGN +G
Sbjct: 117 DLAPDVINNSWGGPSGDNEWLQPAVAAWRAA------------GIFPVFAAGN---DGPR 161
Query: 316 CAADGYINSIY--TIAIASAREDGQ-SPFYSEECTGLIATAYSGGI----SDPVKIITTD 368
C+ + Y + A+ + + + F S + G I S P I +
Sbjct: 162 CSTLNAPPANYPESFAVGATDRNDVLADFSS------RGPSTYGRIKPDISAPGVNIRSA 215
Query: 369 VHNTCTCEHSGTSAAAPIAAGVLALALEANP 399
V SGTS AAP AGV AL ANP
Sbjct: 216 VPGGGYGSSSGTSMAAPHVAGVAALLWSANP 246
>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain,
uncharacterized subfamily 12. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 297
Score = 59.7 bits (145), Expect = 1e-09
Identities = 69/294 (23%), Positives = 96/294 (32%), Gaps = 82/294 (27%)
Query: 157 NGAGVNIIIIDDGMEYTHEDIKD------SFAPELSYNFNAEKWDITPRYEDPRNKHGTR 210
GAGV + ++D G++ TH SF + HGT
Sbjct: 6 TGAGVRVAVLDTGIDLTHPAFAGRDITTKSFVGGED--------------VQDGHGHGTH 51
Query: 211 CAGELVMKPNNSKCG-------VGVCYGAR--VGGVKLLDGETTDLIESKALQFGLDK-V 260
CAG + G GV GA + G L DG D +Q+ +
Sbjct: 52 CAGTI--------FGRDVPGPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGA 103
Query: 261 DIYSGSWG-----------PPDDGKSMD-----GPGKLSKAAIDRGIREGRQGKGVLFVF 304
D+ S S G PP S +L A + + +G L V
Sbjct: 104 DVISMSLGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVA 163
Query: 305 AAGN---------GKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYS 355
AAGN N C + + +A+ G++ +S +S
Sbjct: 164 AAGNESQRPAGIPPVGNPAACPS--------AMGVAAVGALGRTGNFSA------VANFS 209
Query: 356 GG---ISDP-VKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRD 405
G I+ P V I++ SGTS A P AGV AL EA P R
Sbjct: 210 NGEVDIAAPGVDIVSAAP-GGGYRSMSGTSMATPHVAGVAALWAEALPKAGGRA 262
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in
Kp43 proteases. Kp43 proteases are members of the
peptidase S8 or Subtilase clan of proteases. They have
an Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure (an example of convergent
evolution). Kp43 is topologically similar to kexin and
furin both of which are proprotein convertases, but
differ in amino acids sequence and the position of its
C-terminal barrel. Kp43 has 3 Ca2+ binding sites that
differ from the corresponding sites in the other known
subtilisin-like proteases. KP-43 protease is known to
be an oxidation-resistant protease when compared with
the other subtilisin-like proteases.
Length = 293
Score = 58.5 bits (142), Expect = 2e-09
Identities = 64/279 (22%), Positives = 95/279 (34%), Gaps = 48/279 (17%)
Query: 154 LNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEK---WDITPRYEDPRNKHGTR 210
L + G G + + D G++ H D N K +D +D + HGT
Sbjct: 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN--KTNLFHRKIVRYDSLSDTKDDVDGHGTH 59
Query: 211 CAGELVMKPNNSKCGV---GVCYGARVGGVKLLDGETT-------DLIESKALQFGLDKV 260
AG + K N+S GV A++ + D + + S G
Sbjct: 60 VAGIIAGKGNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAG---A 116
Query: 261 DIYSGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNC---- 316
I S SWG P + A D+ +LFVF+AGN +G N
Sbjct: 117 RISSNSWGSPVNNGYTL-----LARAYDQFAYNNPD---ILFVFSAGNDGNDGSNTIGSP 168
Query: 317 ----------AADGY-INSIYTIAIASAREDGQSPFYSEECT--GLIA---TAYSGGI-- 358
A++ +++ S D + F S T G I A GI
Sbjct: 169 ATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTYDGRIKPDLVAPGTGILS 228
Query: 359 SDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEA 397
+ D ++ SGTS A P+ AG AL +
Sbjct: 229 ARSGGGGIGDTSDSAYTSKSGTSMATPLVAGAAALLRQY 267
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain,
uncharacterized subfamily 6. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 254
Score = 57.2 bits (138), Expect = 5e-09
Identities = 59/272 (21%), Positives = 97/272 (35%), Gaps = 36/272 (13%)
Query: 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKP 219
GV + ++D G++ H D+ +F+ + D HGT +G +
Sbjct: 1 GVTVAVLDTGVDADHPDLAG--RVAQWADFDENRRISATEVFD-AGGHGTHVSGTIGGGG 57
Query: 220 NNSKCGVGVCYGARVGGVKLLDGE---TTDLIESK--ALQFGLDKVDIYSGSWGPPDDGK 274
+GV A + K+LD + +I A++ D V + G +D
Sbjct: 58 AKGV-YIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSED-P 115
Query: 275 SMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTI-AIASA 333
+ LS G LFV +AGN + G + ++ A+
Sbjct: 116 LEEAVEALSNQT------------GALFVVSAGNE--GHGTSGSPGSAYAALSVGAVDRD 161
Query: 334 REDGQ--SPFYSEECTGLIATAYSGGISDP-VKIITTDVHNTCTCEH--------SGTSA 382
ED S S + + P V DV++ + SGTS
Sbjct: 162 DEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDGQYTRLSGTSM 221
Query: 383 AAPIAAGVLALALEANPNMTWRDCQHILAWTS 414
AAP AGV AL A+P+++ + L T+
Sbjct: 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETA 253
>gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain,
uncharacterized subfamily 10. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 298
Score = 55.6 bits (134), Expect = 2e-08
Identities = 79/332 (23%), Positives = 122/332 (36%), Gaps = 79/332 (23%)
Query: 145 LNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDP- 203
LN V+Q I G GV + ++D G Y H S + + + P DP
Sbjct: 8 LNATRVHQR-GITGRGVRVAMVDTGF-YAHP-------FFESRGY-QVRVVLAPGATDPA 57
Query: 204 --RNKHGT-RCAGELVMKPNNSKCGVGVCYGARVGGVKLLDGETTDLIESKALQFGLDKV 260
N HGT A + P GA+ GVKL + + + A + +
Sbjct: 58 CDENGHGTGESANLFAIAP-----------GAQFIGVKLGGPDLVNSVG--AFKKAISLS 104
Query: 261 -DIYSGSWG------PPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYN- 312
DI S SWG +S+ K A + + +G++ VF+AGNG ++
Sbjct: 105 PDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVA-----RGIVVVFSAGNGGWSF 159
Query: 313 ----GDNCAADG-YINSIYTIAIASAREDGQSPFYSE----ECTGLIATAYSGG-ISDPV 362
+ AA G +++ +S +S Y + GL+ + PV
Sbjct: 160 PAQHPEVIAAGGVFVDEDGARRASSYASGFRSKIYPGRQVPDVCGLVGMLPHAAYLMLPV 219
Query: 363 KIITTDVHNTCTCEHSGT------------SAAAPIAAGVLALALEANPNMTWRDCQHIL 410
+ + +C GT SAAAP AGV AL L+ANP ++ + +L
Sbjct: 220 P-PGSQLDRSCAAFPDGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLL 278
Query: 411 AWTSEREPLSHVSGWERNARDLWF-HSAYGFG 441
+ ARD+ SA G
Sbjct: 279 ---------------NKTARDVTKGASAQGTS 295
>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family.
Members of the peptidase S53 (sedolisin) family include
endopeptidases and exopeptidases. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of Asn in subtilisin. The stability of
these enzymes may be enhanced by calcium, some members
have been shown to bind up to 4 ions via binding sites
with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values. Characterized sedolisins include Kumamolisin,
an extracellular calcium-dependent thermostable
endopeptidase from Bacillus. The enzyme is synthesized
with a 188 amino acid N-terminal preprotein region which
is cleaved after the extraction into the extracellular
space with low pH. One kumamolysin paralog,
kumamolisin-As, is believed to be a collagenase. TPP1 is
a serine protease that functions as a tripeptidyl
exopeptidase as well as an endopeptidase. Less is known
about PSCP from Pseudomonas which is thought to be an
aspartic proteinase.
Length = 275
Score = 55.4 bits (134), Expect = 2e-08
Identities = 44/166 (26%), Positives = 64/166 (38%), Gaps = 30/166 (18%)
Query: 299 GVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIA---TAYS 355
GVL+ +AGN +G + + G+ + IA+ + F S+ G
Sbjct: 123 GVLYFSSAGN---DGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVG 179
Query: 356 GGISDPVKIITTD------VHNTCT------CEHSGTSAAAPIAAGVLALALEANPNMTW 403
+ P D V+ T GTSAAAP AAGV AL L ANP +T
Sbjct: 180 IRLPTPEVRQKPDVTAPDGVNGTVDGDGDGPPNFFGTSAAAPHAAGVAALVLSANPGLTP 239
Query: 404 RDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGFGLINTFKLV 449
D + L T+ G++ A G GL++ + V
Sbjct: 240 ADIRDALRSTALD---MGEPGYDN---------ASGSGLVDADRAV 273
>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain,
uncharacterized subfamily 13. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 285
Score = 55.0 bits (133), Expect = 3e-08
Identities = 64/215 (29%), Positives = 86/215 (40%), Gaps = 32/215 (14%)
Query: 207 HGTRCAGELVMKPNNSKCGV-GVCYGARVGGVKLL---DGETTDLIESKALQFGLDKVDI 262
HGT AG + NN GV GV +GAR+ V++L G +D+++ GL +
Sbjct: 73 HGTHVAGTIAAVTNNGV-GVAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGV 131
Query: 263 YSGSWGPPDDGK----SMDGPGKLSKA---AIDRGIREGRQGKGVLFVFAAGNGKYNGDN 315
P+ K S+ G G S AI+ +GVL V AAGN G +
Sbjct: 132 PV----NPNPAKVINLSLGGDGACSATMQNAINDVR-----ARGVLVVVAAGN---EGSS 179
Query: 316 CAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGI-------SDPVKIITTD 368
+ D N IA+ + GQ YS + +A G P T
Sbjct: 180 ASVDAPANCRGVIAVGATDLRGQRASYSNYGPAVDVSAPGGDCASDVNGDGYPDSNTGTT 239
Query: 369 VHNTCTCEH-SGTSAAAPIAAGVLALALEANPNMT 402
T GTS AAP AGV AL NP++T
Sbjct: 240 SPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLT 274
>gnl|CDD|173792 cd04843, Peptidases_S8_11, Peptidase S8 family domain,
uncharacterized subfamily 11. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 277
Score = 53.5 bits (129), Expect = 9e-08
Identities = 60/258 (23%), Positives = 94/258 (36%), Gaps = 40/258 (15%)
Query: 157 NGAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELV 216
+G GV + I+ G HED+ + +S + + HGT G +V
Sbjct: 14 SGQGVTFVDIEQGWNLNHEDLVGNGITLISG----------LTDQADSD-HGTAVLGIIV 62
Query: 217 MKPNNSKCGVGVCYGARVGGVKLLDGETT-DLIESKALQFGLDKVDIYSGSWGPPDDGKS 275
K +N G+ +GA+ V T D I A V + G P++G
Sbjct: 63 AK-DNGIGVTGIAHGAQAAVVSSTRVSNTADAILDAADYLSPGDVILLEMQTGGPNNGYP 121
Query: 276 MDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAAD-GYINSIYT------- 327
P + +A D IR G++ V AAGNG + D + G I + ++
Sbjct: 122 PL-PVEYEQANFDA-IRTATD-LGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSG 178
Query: 328 --IAIASAREDGQSPFYSE------ECTGL---IATAYSGGISDPVKIITTDVHNTCTCE 376
+ A + G + + G + T G + D + T
Sbjct: 179 AIMVGAGSSTTGHTRLAFSNYGSRVDVYGWGENVTTTGYGDLQDL-----GGENQDYTDS 233
Query: 377 HSGTSAAAPIAAGVLALA 394
SGTS+A+PI AG A
Sbjct: 234 FSGTSSASPIVAGAAASI 251
>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain,
uncharacterized subfamily 8. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 222
Score = 52.3 bits (126), Expect = 1e-07
Identities = 59/257 (22%), Positives = 97/257 (37%), Gaps = 46/257 (17%)
Query: 160 GVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMK- 218
GV + +ID G++ H D+ + A + + E ++ D ++ HGT CAG ++K
Sbjct: 1 GVRVAVIDSGVDTDHPDLGNL-ALDGEVTIDLEIIVVSAEGGD-KDGHGTACAG--IIKK 56
Query: 219 --PNNSKCGVGVCYGARVGGVKLL--DGETTDLIESKALQFGLDK-VDIYSGSWGPPDDG 273
P A +G +K+L DG + KAL+ ++ + I + S G P D
Sbjct: 57 YAPE-----------AEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD- 104
Query: 274 KSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIAIASA 333
+ + + E G + V AA N G A ++ I + S
Sbjct: 105 ---------RDFPLLKELLEYAYKAGGIIVAAAPNNNDIG-TPPAS--FPNV--IGVKSD 150
Query: 334 REDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLAL 393
D F+ S I + SG S AAP G++AL
Sbjct: 151 TADDPKSFWY----------IYVEFSADGVDIIAPAPHGRYLTVSGNSFAAPHVTGMVAL 200
Query: 394 ALEANPNMTWRDCQHIL 410
L P++ D + +L
Sbjct: 201 LLSEKPDIDANDLKRLL 217
>gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain,
uncharacterized subfamily 7. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 247
Score = 48.9 bits (117), Expect = 2e-06
Identities = 65/292 (22%), Positives = 104/292 (35%), Gaps = 89/292 (30%)
Query: 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNK----------HGTR 210
+ + +IDDG++ D++ S+ YE NK HGT
Sbjct: 5 IKVALIDDGVDILDSDLQGKIIGGKSF----------SPYEGDGNKVSPYYVSADGHGTA 54
Query: 211 CAGELVMKPNNSKCGVGVCYGARVGGVKLLDGETTD-LIES-------KALQFGLDK-VD 261
A ++ + +C A++ +KL D + D S KA++ ++K VD
Sbjct: 55 MA-RMICR---------ICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVD 104
Query: 262 IYSGSWGPPDDGKSMDGPGKLSKA---AIDRGIREGRQGKGVLFVFAAGNGKYNGDN--- 315
I S SW + + +L A A+DRGI +LF A+ G + GD
Sbjct: 105 IISMSWTIKKPEDNDNDINELENAIKEALDRGI--------LLFCSASDQGAFTGDTYPP 156
Query: 316 CAADGYINSIYTIAIASAREDGQSPFYSEECTGL--------IATAYSGGISDPVKIITT 367
AA I I +A EDG + + + + +S+
Sbjct: 157 PAARDRI-----FRIGAADEDGGADAPVGDEDRVDYILPGENVEARDRPPLSNSFV---- 207
Query: 368 DVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWRDCQ--HILAWTSERE 417
H+G+S A +AAG+ AL L C + E E
Sbjct: 208 --------THTGSSVATALAAGLAALILY---------CVRLRAIGAEEENE 242
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
Length = 639
Score = 47.7 bits (113), Expect = 2e-05
Identities = 71/318 (22%), Positives = 125/318 (39%), Gaps = 53/318 (16%)
Query: 130 YEQDYRLSNSSKKLDLNIVPVYQELNING--AGVNIIIIDDGMEYTHEDIKDS------- 180
Y+ + N LDL + QEL NI +ID G++Y H D+ D+
Sbjct: 285 YQFNDEGRNLQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNVKE 344
Query: 181 ------FAPELSYNFNAEK-WDITPRYEDP--RNKHGTRCAGELVMKPNNSKCGVGVCYG 231
+ + N + E + P N HGT +G + NN+ VGV
Sbjct: 345 LHGRKGIDDDNNGNVDDEYGANFVNNDGGPMDDNYHGTHVSGIISAIGNNNIGIVGVDKR 404
Query: 232 ARVGGVKLLD----GETTDLIESKALQFGLDK-VDIYSGSWGPPDDGKSMDGPGKLSKAA 286
+++ K LD G D+ K + + + + +GS+ S D + +
Sbjct: 405 SKLIICKALDSHKLGRLGDMF--KCFDYCISREAHMINGSF-------SFDEYSGIFNES 455
Query: 287 IDRGIREGRQGKGVLFVFAAGNGKYNGDNCAA----DGYINSIY----------TIAIAS 332
+ + KG+LFV +A N + ++ D +N +Y I +++
Sbjct: 456 VKY-----LEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSN 510
Query: 333 AREDGQSPFYSEECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLA 392
+D + YS + Y + I +T N+ + +GTS AAP A + +
Sbjct: 511 LIKDKNNQ-YSLSPNSFYSAKYCQLAAPGTNIYSTFPKNSYR-KLNGTSMAAPHVAAIAS 568
Query: 393 LALEANPNMTWRDCQHIL 410
L L NP++++ + IL
Sbjct: 569 LILSINPSLSYEEVIRIL 586
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine
protease mycosin. Members of this family are
subtilisin-related serine proteases, found strictly in
the Actinobacteria and associated with type VII
secretion operons. The designation mycosin is used for
members from Mycobacterium [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair].
Length = 350
Score = 46.9 bits (112), Expect = 2e-05
Identities = 67/304 (22%), Positives = 108/304 (35%), Gaps = 55/304 (18%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVM 217
GAGV + +ID G++ H + P + + + D + HGT AG +
Sbjct: 12 GAGVTVAVIDTGVD-DHPRLPGLVLPGGDFVGSGDG-------TDDCDGHGTLVAGIIAG 63
Query: 218 KPNNSKCGVGVCYGARVGGVKLLD------------GETTDLIES--KALQFGLDKVDIY 263
+P GV AR+ ++ G+ L ++ +A G D ++I
Sbjct: 64 RPGEGDGFSGVAPDARILPIRQTSAAFEPDEGTSGVGDLGTLAKAIRRAADLGADVINIS 123
Query: 264 SGSWGPPDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGY-I 322
+ P G G AA+ + KGV+ V AAGN +G Y
Sbjct: 124 LVACLPAGSGADDPELG----AAVRYAL-----DKGVVVVAAAGNTGGDG-QKTTVVYPA 173
Query: 323 NSIYTIAIASAREDGQSPFYSE--ECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGT 380
+A+ S DG +S L A I++ SGT
Sbjct: 174 WYPGVLAVGSIDRDGTPSSFSLPGPWVDLAAPG--------ENIVSLSPGGDGLATTSGT 225
Query: 381 SAAAPIAAGVLALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSAYGF 440
S AAP +G AL P++T + + T++ R RD G+
Sbjct: 226 SFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATADHPA--------RGGRD----DYVGY 273
Query: 441 GLIN 444
G+++
Sbjct: 274 GVVD 277
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in
Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain is
located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 346
Score = 46.1 bits (110), Expect = 3e-05
Identities = 69/324 (21%), Positives = 106/324 (32%), Gaps = 94/324 (29%)
Query: 149 PVYQELNINGAGVNIIIIDDGMEYTHED--IKDSFAPELSYNFNAEKWDITPRYEDPRNK 206
P++ + G G+ + +ID G++ TH+ + D + S F A+K Y N+
Sbjct: 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNE 60
Query: 207 -----------------------HGTRCAGELV--MKPNNSKCGV-GVCYGA-----RVG 235
HG AG + ++ G+ GV A +V
Sbjct: 61 KVPFAYNYADNNDDILDEDDGSSHGMHVAGIVAGNGDEEDNGEGIKGVAPEAQLLAMKVF 120
Query: 236 GVKLLDGETTDLIESKALQFGLDKV----DIYSGSWGPPDDGKSMDGPGKLSKAAIDRGI 291
D +KA++ D V D+ + S G + AI R
Sbjct: 121 SNPEGGSTYDDAY-AKAIE---DAVKLGADVINMSLGSTAG---FVDLDDPEQQAIKRA- 172
Query: 292 REGRQGKGVLFVFAAGN----GKYNGDNCAADGYINSIY--------TIAIASARE---- 335
+ GV+ V AAGN G A + + +ASA +
Sbjct: 173 ----REAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKKVPN 228
Query: 336 --DGQSPFYSEECTGLIATAYSGG----------ISDP-VKIITTDVHNTCTCEHSGTSA 382
GQ +S S G I+ P I +T NT SGTS
Sbjct: 229 PNGGQMSGFS-----------SWGPTPDLDLKPDITAPGGNIYSTVNDNTYGYM-SGTSM 276
Query: 383 AAPIAAGVLALALEA----NPNMT 402
A+P AG AL + P ++
Sbjct: 277 ASPHVAGASALVKQRLKEKYPKLS 300
>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8
family domain in Lantiobiotic (lanthionine-containing
antibiotics) specific proteases. Lantiobiotic
(lanthionine-containing antibiotics) specific proteases
are very similar in structure to serine proteases.
Lantibiotics are ribosomally synthesised antimicrobial
agents derived from ribosomally synthesised peptides
with antimicrobial activities against Gram-positive
bacteria. The proteases that cleave the N-terminal
leader peptides from lantiobiotics include: epiP, nsuP,
mutP, and nisP. EpiP, from Staphylococcus, is thought
to cleave matured epidermin. NsuP, a dehydratase from
Streptococcus and NisP, a membrane-anchored
subtilisin-like serine protease from Lactococcus cleave
nisin. MutP is highly similar to epiP and nisP and is
thought to process the prepeptide mutacin III of S.
mutans. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) clan include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53 the it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 294
Score = 43.9 bits (104), Expect = 1e-04
Identities = 57/289 (19%), Positives = 103/289 (35%), Gaps = 59/289 (20%)
Query: 161 VNIIIIDDGMEYTHEDIKDSFAP-----ELSYNFNAEKWDIT--PRYEDPRNKHGTRCAG 213
V + +ID G++ H D+K+S + ++ ++ T + HGT AG
Sbjct: 2 VTVAVIDSGIDPDHPDLKNSISSYSKNLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAG 61
Query: 214 ELVMKPNNSKCGVGVCYGARVGGVKLLD----GETTDLIES--KALQFGLDKVDIYSGSW 267
++ N GV G + ++ E++ +I++ A G+D +++ G +
Sbjct: 62 QIAANGNIK----GVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGY 117
Query: 268 GPPDDGKSMDGPG-KLSKAAIDRGIREGRQGKGVLFVFAAGN------------------ 308
D K AI+ + KG + V AAGN
Sbjct: 118 LIIGGEYEDDDVEYNAYKKAINYA-----KSKGSIVVAAAGNDGLDVSNKQELLDFLSSG 172
Query: 309 --GKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISDPVKIIT 366
NG+ + ++ T++ A+ S F + + + A G +
Sbjct: 173 DDFSVNGEVYDVPASLPNVITVS-ATDNNGNLSSFSNYGNSRIDLAAPGGDFLLLDQYGK 231
Query: 367 TD-VHNTCTCEHS--------------GTSAAAPIAAGVLALALEANPN 400
V+N + GTS AAP +G LAL ++ NP
Sbjct: 232 EKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPL 280
>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family
domain in Subtilisin_Novo-like proteins. Subtilisins
are a group of alkaline proteinases originating from
different strains of Bacillus subtilis. Novo is one of
the strains that produced enzymes belonging to this
group. The enzymes obtained from the Novo and BPN'
strains are identical. The Carlsburg and Novo
subtilisins are thought to have arisen from a common
ancestral protein. They have similar peptidase and
esterase activities, pH profiles, catalyze
transesterification reactions, and are both inhibited by
diispropyl fluorophosphate, though they differ in 85
positions in the amino acid sequence. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser with an additional acidic residue Asp in the
oxyanion hole, similar to that of subtilisin.. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 291
Score = 43.9 bits (104), Expect = 1e-04
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 298 KGVLFVFAAGNGKYNGDNCA--------ADGYINSIYTIAIASAREDGQ---SPF--YSE 344
KGVL V AAGN + D G + + AS+++ + F Y +
Sbjct: 170 KGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKYENNLVANFSNYGK 229
Query: 345 ECTGLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNMTWR 404
+ + A +I +T N SGTS AAP+ +GV AL PN+T +
Sbjct: 230 KNVDVFAPG--------ERIYSTTPDNEYE-TDSGTSMAAPVVSGVAALIWSYYPNLTAK 280
Query: 405 DCQHIL 410
+ + I+
Sbjct: 281 EVKQII 286
>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain,
uncharacterized subfamily 4. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 239
Score = 41.1 bits (97), Expect = 7e-04
Identities = 63/261 (24%), Positives = 83/261 (31%), Gaps = 71/261 (27%)
Query: 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPN 220
V + +ID G++ H P LS A + P P HGT A L
Sbjct: 1 VRVGMIDTGIDTAH--------PALSAVVIARLFFAGPGAPAPSA-HGTAVASLLA---- 47
Query: 221 NSKCGVGVCYGARVGGVKLL------DGETTDLIESKALQFGLD-----KVDIYSGSWGP 269
G G + G L + + AL LD V + + S
Sbjct: 48 ----GAGAQRPGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAG 103
Query: 270 PDDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYTIA 329
P + L AA+ +G++ V AAGN D AA + Y
Sbjct: 104 PPN--------ALLAAAVAAAAA-----RGMVLVAAAGN-----DGPAAPPLYPAAYPGV 145
Query: 330 IASAREDGQSPFYSEECTGL----------IATAYSGGISDPVKIITTDVHNTCTCEHSG 379
IA D + Y E G + A GG V SG
Sbjct: 146 IAVTAVDARGRLYREANRGAHVDFAAPGVDVWVAAPGGGYRYV---------------SG 190
Query: 380 TSAAAPIAAGVLALALEANPN 400
TS AAP LAL L+A+P
Sbjct: 191 TSFAAPFVTAALALLLQASPL 211
>gnl|CDD|173813 cd07488, Peptidases_S8_2, Peptidase S8 family domain,
uncharacterized subfamily 2. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 247
Score = 39.0 bits (91), Expect = 0.004
Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 298 KGVLFVFAAGN-GKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECTGLIATAYSG 356
V+ VF+AGN GK + +I + S +G F S+ G
Sbjct: 122 YEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDRFFASDVSNAGSEINSYG 181
Query: 357 G----ISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPNM 401
I P + SGTS +AP+ G++AL LE
Sbjct: 182 RRKVLIVAPGSNYNLP--DGKDDFVSGTSFSAPLVTGIIALLLEFYDRQ 228
>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain,
uncharacterized subfamily 14. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 311
Score = 37.8 bits (88), Expect = 0.011
Identities = 66/296 (22%), Positives = 94/296 (31%), Gaps = 64/296 (21%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEK-----WDITPRY----EDPRNKHG 208
G GV I I+D G++Y+H D+ F+ + D + D HG
Sbjct: 1 GEGVVIAIVDTGVDYSHPDLDIYGNFSWKLKFDYKAYLLPGMDKWGGFYVIMYDF-FSHG 59
Query: 209 TRCAGELVMKPNNSKCG---------VGVCYGARVGGVKLLDGETTDLIESKALQF---- 255
T CA + G+ A++ VK L F
Sbjct: 60 TSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVD 119
Query: 256 --------GLDKVDIYSGSWGPPDDGKSMDGPG-KLSKAAIDRGIREGRQGKGVLFVFAA 306
G +VD+ S SWG + + PG +S ID + GV V AA
Sbjct: 120 RKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGLDISSLVIDALVTY----TGVPIVSAA 175
Query: 307 GNGKYNGDNCAADGYINSIYTIAIASAREDGQSPFYSEECT----GLIATAYSGGISDPV 362
GNG A G + I++ +A PFY G + + S G S
Sbjct: 176 GNGGPGYGTITAPG--AASLAISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRGPS-IA 232
Query: 363 KIITTDVHN--------TCTCEHS-------------GTSAAAPIAAGVLALALEA 397
D+ + GTS A P+ AG AL + A
Sbjct: 233 GDPKPDLAAIGAFAWAPGRVLDSGGALDGNEAFDLFGGTSMATPMTAGSAALVISA 288
>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in
CspA-like proteins. GSP (germination-specific protease)
converts the spore peptidoglycan hydrolase (SleC)
precursor to an active enzyme during germination of
Clostridium perfringens S40 spores. Analysis of an
enzyme fraction of GSP showed that it was composed of a
gene cluster containing the processed forms of products
of cspA, cspB, and cspC which are positioned in a tandem
array just upstream of the 5' end of sleC. The amino
acid sequences deduced from the nucleotide sequences of
the csp genes showed significant similarity and showed a
high degree of homology with those of the catalytic
domain and the oxyanion binding region of
subtilisin-like serine proteases. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 455
Score = 38.0 bits (89), Expect = 0.011
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 362 VKIITTDVHNTCTCEHSGTSAAAPIAAGVLALALEANPN 400
V I+T T SGTS AA I AG AL L+
Sbjct: 382 VNILTASPGGGYT-TRSGTSVAAAIVAGACALLLQWGIV 419
Score = 29.1 bits (66), Expect = 6.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 158 GAGVNIIIIDDGMEYTHEDIKDS 180
G GV + IID G++Y H + ++
Sbjct: 3 GKGVLVGIIDTGIDYLHPEFRNE 25
>gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease,
Peptidase S8 family domain in Thiazoline
oxidase/subtilisin-like proteases. Thiazoline
oxidase/subtilisin-like protease is produced by the
symbiotic bacteria Prochloron spp. that inhabit didemnid
family ascidians. The cyclic peptides of the
patellamide class found in didemnid extracts are now
known to be synthesized by the Prochloron spp. The
prepatellamide is heterocyclized to form thiazole and
oxazoline rings and the peptide is cleaved to form the
two cyclic patellamides A and C. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Length = 267
Score = 36.2 bits (84), Expect = 0.038
Identities = 58/253 (22%), Positives = 91/253 (35%), Gaps = 56/253 (22%)
Query: 161 VNIIIIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELVMKPN 220
+ I I+D ++ TH + + L+ F + + HGT A + +P
Sbjct: 12 ITIAILDGPVDRTHPCFRGA---NLTPLFTY--AAAACQDGGA-SAHGTHVASLIFGQPC 65
Query: 221 NSKCGVG-VCYGARV-------GGVKLLDGETTDLIESKALQFGLDKVDIYSGSWGPPDD 272
+S G+ +C G + G LD I AL+ G ++I G +
Sbjct: 66 SSVEGIAPLCRGLNIPIFAEDRRGCSQLD--LARAIN-LALEQGAHIINISGGRLTQTGE 122
Query: 273 GKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNC-----AADGYINSIYT 327
L+ A + +Q VL V AAGN G C A
Sbjct: 123 A-----DPILANA-----VAMCQQ-NNVLIVAAAGN---EGCACLHVPAALPS------V 162
Query: 328 IAIASAREDGQSPFYSEECT-----GLIATAYSGGISDPVKIITTDVHNTCTCEHSGTSA 382
+A+ + +DG +S G++A G + + +V SGTS
Sbjct: 163 LAVGAMDDDGLPLKFSNWGADYRKKGILAP----GENILGAALGGEV-----VRRSGTSF 213
Query: 383 AAPIAAGVLALAL 395
AA I AG+ AL L
Sbjct: 214 AAAIVAGIAALLL 226
>gnl|CDD|163497 TIGR03785, marine_sort_HK, proteobacterial dedicated sortase system
histidine kinase. This histidine kinase protein is
paired with an adjacent response regulator (TIGR03787)
gene. It co-occurs with a variant sortase enzyme
(TIGR03784), usually in the same gene neighborhood, in
proteobacterial species most of which are marine, and
with an LPXTG motif-containing sortase target conserved
protein (TIGR03788). Sortases and LPXTG proteins are far
more common in Gram-positive bacteria, where sortase
systems mediate attachment to the cell wall or
cross-linking of pilin structures. We give this
predicted sensor histidine kinase the gene symbol psdS,
for Proteobacterial Dedicated Sortase system Sensor
histidine kinase.
Length = 703
Score = 36.3 bits (84), Expect = 0.046
Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 22/160 (13%)
Query: 32 DLGFHYNGIINGLD--NHYL--FSKK-QHNHKTPEETTFETVGLLNDARVIWTQQQFAKH 86
DL + ++ L HYL S + H +TP ++ L + +Q++ +
Sbjct: 466 DLSRSFAQMVARLRQYTHYLENMSSRLSHELRTPVAVVRSSLENLELQALEQEKQKYLE- 524
Query: 87 LRKRAEIQELRRQLRAMSQIYRKETEVSKYEGMFTDEWWPMQW----YEQDYRLSNSSKK 142
R R + L L MS+ R E + E E + + Q Y+++ ++
Sbjct: 525 -RAREGTERLSMILNNMSEATRLEQAIQSAE----VEDFDLSEVLSGCMQGYQMTYPPQR 579
Query: 143 LDLNIVPVYQELNINGAGVNII-----IIDDGMEYTHEDI 177
+LNI P L + G+ I ++D+ E++ ED
Sbjct: 580 FELNI-PE-TPLVMRGSPELIAQMLDKLVDNAREFSPEDG 617
>gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family.
Members of the peptidases S53 (sedolisin) family include
endopeptidases and exopeptidases sedolisin, kumamolysin,
and (PSCP) Pepstatin-insensitive Carboxyl Proteinase.
The S53 family contains a catalytic triad Glu/Asp/Ser
with an additional acidic residue Asp in the oxyanion
hole, similar to that of Asn in subtilisin. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values. Characterized sedolisins
include Kumamolisin, an extracellular calcium-dependent
thermostable endopeptidase from Bacillus. The enzyme is
synthesized with a 188 amino acid N-terminal preprotein
region which is cleaved after the extraction into the
extracellular space with low pH. One kumamolysin
paralog, kumamolisin-As, is believed to be a
collagenase. TPP1 is a serine protease that functions as
a tripeptidyl exopeptidase as well as an endopeptidase.
Less is known about PSCP from Pseudomonas which is
thought to be an aspartic proteinase.
Length = 361
Score = 35.4 bits (82), Expect = 0.067
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 378 SGTSAAAPIAAGVLALALEAN 398
GTSAAAP+ AG++AL +A
Sbjct: 278 GGTSAAAPLFAGLIALINQAR 298
>gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease,
PatA/PatG family. This model describes a protease
domain associated with the maturation of various members
of the cyanobactin family of ribosomally produced,
heavily modified bioactive metabolites. Members include
the PatA protein and C-terminal domain of the PatG
protein of Prochloron didemni, TenA and a region of TenG
from Nostoc spongiaeforme var. tenue, etc.
Length = 602
Score = 35.1 bits (81), Expect = 0.11
Identities = 31/104 (29%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 296 QGKGVLFVFAAGNGKYNGDNC----AADGYINSIYTIAIASAREDGQSPFYSEECTGLIA 351
Q +L V AAGN +G C AA + +A+ + +DG+ P
Sbjct: 84 QENNILIVAAAGN---DGCECLHVPAA---LPG--VLAVGAMDDDGR-PLDFSNWGEAYQ 134
Query: 352 TAYSGGISDPVKIITTDVHNTCTCEHSGTSAAAPIAAGVLALAL 395
GI P + I T SGTS A P+ GV AL L
Sbjct: 135 AQ---GILAPGENILGAQPGGETVRLSGTSFATPVVTGVAALLL 175
>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain,
uncharacterized subfamily 9. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 261
Score = 34.2 bits (79), Expect = 0.12
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 378 SGTSAAAPIAAGVLALALEANPNMTW 403
+GTS + P+ AG++A +A+PN T
Sbjct: 224 NGTSFSCPLIAGLIACLWQAHPNWTN 249
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 291
Score = 33.8 bits (78), Expect = 0.22
Identities = 59/294 (20%), Positives = 92/294 (31%), Gaps = 76/294 (25%)
Query: 165 IIDDGMEYTHEDIKDSFAPELSYNFNAEKWDITPRYEDPRNKHGTRCAGELV---MKPNN 221
++D G+ H + + A + + P + HGT AG + +
Sbjct: 5 VLDSGINRGHPLLAPALAEDDLDSDE-------PGWTADDLGHGTAVAGLALYGDLTLPG 57
Query: 222 SKCGVGVCYGARVGGVKLLDG-----------ETTDLIESKALQFGLDKVDIYSGSWGPP 270
+ C R+ V++L T I +Q D V +++ S G P
Sbjct: 58 NGLPRPGC---RLESVRVLPPNGENDPELYGDITLRAIRRAVIQNP-DIVRVFNLSLGSP 113
Query: 271 DDGKSMDGPGKLSKAAIDRGIREGRQGKGVLFVFAAGNGKYNGDNCAADGYINSIYT--- 327
DG AA+D+ E VLFV +AGN GD+ AADG
Sbjct: 114 LPID--DGRPSSWAAALDQLAAEYD----VLFVVSAGN---LGDDDAADGPPRIQDDEIE 164
Query: 328 --------IAIASAREDGQSPFYSEECTGLIA-----TAYSGGISDPVK----------- 363
+ + + D + A T+ G P+K
Sbjct: 165 DPADSVNALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAFGGNLA 224
Query: 364 ------IITTDVHNTCT---------CEHSGTSAAAPIAAGVLALALEANPNMT 402
D+ T GTS AAP+AA + A P ++
Sbjct: 225 YDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELS 278
>gnl|CDD|218079 pfam04420, CHD5, CHD5-like protein. Members of this family are
probably coiled-coil proteins that are similar to the
CHD5 (Congenital heart disease 5) protein. In
Saccharomyces cerevisiae this protein localises to the
ER and is thought to play a homeostatic role.
Length = 161
Score = 32.6 bits (75), Expect = 0.24
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 79 TQQQFAKHLRKRAEIQELRRQLRAMS 104
+ + + R EI EL+R+L ++S
Sbjct: 35 LSKDAKEQSQLRKEILELKRELNSIS 60
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 32.5 bits (74), Expect = 0.43
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 160 GVNIIIIDDGMEYTHEDIKDSFAPE--LSYNFNAEKW 194
G NII DG E ++I F PE +SY NAEKW
Sbjct: 197 GRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKW 233
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain,
uncharacterized subfamily 3. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 307
Score = 31.4 bits (72), Expect = 1.0
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 378 SGTSAAAPIAAGVLALALEANPNMTW 403
SGTS A+P AGV AL A+P W
Sbjct: 270 SGTSMASPHVAGVAALLKSAHP--DW 293
>gnl|CDD|239652 cd03680, MM_CoA_mutase_ICM_like, Coenzyme
B12-dependent-methylmalonyl coenzyme A (CoA) mutase
(MCM) family, isobutyryl-CoA mutase (ICM)-like
subfamily; contains archaeal and bacterial proteins
similar to the large subunit of Streptomyces
cinnamonensis coenzyme B12-dependent ICM. ICM from S.
cinnamonensis is comprised of a large and a small
subunit. The holoenzyme appears to be an alpha2beta2
heterotetramer with up to 2 molecules of coenzyme B12
bound. The small subunit binds coenzyme B12. ICM
catalyzes the reversible rearrangement of n-butyryl-CoA
to isobutyryl-CoA, intermediates in fatty acid and
valine catabolism, which in S. cinnamonensis can be
converted to methylmalonyl-CoA and used in polyketide
synthesis.
Length = 538
Score = 31.5 bits (72), Expect = 1.2
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 15/59 (25%)
Query: 148 VPVYQELNING-----AGVNII-----IIDDGMEYTHEDIK-----DSFAPELSYNFNA 191
VP + ++I+G AG + + DG+ Y ++ D FAP LS+ FN+
Sbjct: 219 VPKWNPISISGYHIREAGATAVQELAFTLADGIAYVEAVLERGLDVDEFAPRLSFFFNS 277
>gnl|CDD|147573 pfam05461, ApoL, Apolipoprotein L. Apo L belongs to the high
density lipoprotein family that plays a central role in
cholesterol transport. The cholesterol content of
membranes is important in cellular processes such as
modulating gene transcription and signal transduction
both in the adult brain and during neurodevelopment.
There are six apo L genes located in close proximity to
each other on chromosome 22q12 in humans. 22q12 is a
confirmed high-susceptibility locus for schizophrenia
and close to the region associated with velocardiofacial
syndrome that includes symptoms of schizophrenia.
Length = 313
Score = 31.2 bits (71), Expect = 1.4
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 82 QFAKHLRKRAEIQELRRQLRAMSQIYRK 109
+ A+ LR RA QEL +L +++IY
Sbjct: 287 ESAEELRARA--QELEEKLEELTKIYES 312
>gnl|CDD|182168 PRK09958, PRK09958, DNA-binding transcriptional activator EvgA;
Provisional.
Length = 204
Score = 30.6 bits (69), Expect = 1.6
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 295 RQGKGVLFVFAAGNGKYNGDNCA---ADGYI------NSIYTIAIASAREDGQS--PFYS 343
RQ G++ + +A N + G +CA A+G++ N+I IA A ++G PF
Sbjct: 70 RQYSGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNI--IAAIEAAKNGYCYFPFSL 127
Query: 344 EE-CTGLIATA 353
L +
Sbjct: 128 NRFVGSLTSDQ 138
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase. This family
consists of various patatin glycoproteins from plants.
The patatin protein accounts for up to 40% of the total
soluble protein in potato tubers. Patatin is a storage
protein but it also has the enzymatic activity of lipid
acyl hydrolase, catalyzing the cleavage of fatty acids
from membrane lipids. Members of this family have been
found also in vertebrates.
Length = 189
Score = 29.9 bits (67), Expect = 2.6
Identities = 26/137 (18%), Positives = 43/137 (31%), Gaps = 11/137 (8%)
Query: 378 SGTSAAAPIAAGVLALALEANPNMTWRDCQHILAWTSEREPLSHVSGWERNARDLWFHSA 437
SGTSA A AA LAL +P + + L
Sbjct: 31 SGTSAGAINAA---LLALGGDPEEILDELLELKLNLFLSRLR----LRAAGLLALLRGLI 83
Query: 438 YGFGLINTFKLVSLAKNWVNVPAQAKCEIALD---VGSSTGFSYASSWQRSFNITPCSDT 494
G GL + L L + + + L V T + S+ + + D
Sbjct: 84 GGGGLFDGDALEELLRKLLGDLTLEELAARLGILLVILVTPATVGSAALGTRALILFRDD 143
Query: 495 VDEVKYL-EHVHATLNI 510
+D + L + + A+ +
Sbjct: 144 LDPDEDLADALLASSAL 160
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 29.6 bits (67), Expect = 3.1
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 229 CYGARVGGVKLLDGETTDLIESKALQFGLDKVDIYSGS 266
C RV ++ D E +LI +FG+ V++ GS
Sbjct: 62 CPKGRVIAIER-DEEVVNLIRRNCDRFGVKNVEVIEGS 98
>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
Provisional.
Length = 831
Score = 30.1 bits (67), Expect = 4.0
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 37 YNGIINGLDNHYLFSKKQHNHKTPEETTFETVGLLNDARVIWTQQQFAKHLRKRAEIQEL 96
+ G+IN NH+L +Q E T L D +I QQ LR + + +
Sbjct: 267 FKGVINN-TNHHLDEGRQEKQDQIREITLSITKQLADGDIIAASQQLFAALRNQQQ-DPV 324
Query: 97 RRQLRAM--------SQIYRKETEVSKYEG 118
QLR++ Q Y+ ++V K G
Sbjct: 325 LIQLRSVIFSHLGYYEQAYQDISDVEKIIG 354
>gnl|CDD|185183 PRK15283, PRK15283, putative fimbrial subunit StfA; Provisional.
Length = 186
Score = 29.0 bits (64), Expect = 5.9
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 322 INSIYTIAIASAREDGQSPFYSEECTGLIATAYSGGISD-PVKIITTDVHNTCTCEHSGT 380
+N+ A+A+A G S F + + ++G I D P I+ D H T H GT
Sbjct: 1 MNTAVKAAVAAALVMGVSSFANAAGSNTGTVTFTGTIEDSPCSIVVGDEHQTVNLGHIGT 60
Query: 381 SA 382
+
Sbjct: 61 GS 62
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component.
The 2-oxoglutarate dehydrogenase complex consists of
this thiamine pyrophosphate-binding subunit (E1),
dihydrolipoamide succinyltransferase (E2), and lipoamide
dehydrogenase (E3). The E1 ortholog from Corynebacterium
glutamicum is unusual in having an N-terminal extension
that resembles the dihydrolipoamide succinyltransferase
(E2) component of 2-oxoglutarate dehydrogenase [Energy
metabolism, TCA cycle].
Length = 929
Score = 29.5 bits (66), Expect = 6.4
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 14/110 (12%)
Query: 86 HLRKRAEIQELRRQLRAMS--QIYRKETEVSKY----EGMF------TDEWWPMQWYEQD 133
H+ +R ++ +RR L MS + R VS EG F +E E
Sbjct: 754 HILRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELAEGTFQPVIGEIEESGLSLDPEGV 813
Query: 134 YRLSNSSKKLDLNIVPVYQELNINGAGVNIIIIDDGMEYTHEDIKDSFAP 183
RL S K+ ++ Q V I+ I+ + H+ +K+
Sbjct: 814 KRLVLCSGKVYYDL--HEQRRKNGQKDVAIVRIEQLYPFPHKAVKEVLQQ 861
>gnl|CDD|112770 pfam03971, IDH, Monomeric isocitrate dehydrogenase.
NADP(+)-dependent isocitrate dehydrogenase (ICD) is an
important enzyme of the intermediary metabolism, as it
controls the carbon flux within the citric acid cycle
and supplies the cell with 2-oxoglutarate EC:1.1.1.42
and NADPH for biosynthetic purposes.
Length = 735
Score = 29.1 bits (65), Expect = 9.0
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 513 PRRGDVRIELTAPSGVKSVLMEPRPQDD 540
+ G VRIE A G VL +P
Sbjct: 187 AQAGMVRIEFVAKDGKVKVLKDPVALQA 214
>gnl|CDD|203455 pfam06456, Arfaptin, Arfaptin-like domain. Arfaptin interacts with
ARF1, a small GTPase involved in vesicle budding at the
Golgi complex and immature secretory granules. The
structure of arfaptin shows that upon binding to a small
GTPase, arfaptin forms an elongated, crescent-shaped
dimer of three-helix coiled-coils. The N-terminal region
of ICA69 is similar to arfaptin.
Length = 229
Score = 28.5 bits (64), Expect = 9.2
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 51 SKKQHNHKTPEETTFETVGLLNDARVIWTQQQFAKHLRKRAEIQELRRQL----RAMSQI 106
K Q +K ++ + E +G D+ I + + L IQ L R S+
Sbjct: 3 KKVQSTYKCTKQVSSEKLGKKEDSHAITSDDELDAKLEVLRSIQRTYLGLVKLARNYSKR 62
Query: 107 YRKETEVSK 115
++ K
Sbjct: 63 LYDLSQTQK 71
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.422
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,382,223
Number of extensions: 2978320
Number of successful extensions: 2868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2800
Number of HSP's successfully gapped: 76
Length of query: 586
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 484
Effective length of database: 6,413,494
Effective search space: 3104131096
Effective search space used: 3104131096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.7 bits)