BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5379
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 215 WVLDITIGYPQGNPIDLPTIIMGQRDPCTTTLFYRLY 251
WV I G+ Q D P +I G RD T + ++LY
Sbjct: 23 WVTSIVAGFSQKENEDSPVLISGSRDK--TVMIWKLY 57
>pdb|3DHG|B Chain B, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHG|E Chain E, Crystal Struture Of Toluene 4-monoxygenase Hydroxylase
pdb|3DHH|B Chain B, Crystal Structure Of Resting State Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
pdb|3DHI|B Chain B, Crystal Structure Of Reduced Toluene 4-monoxygenase
Hydroxylase Complexed With Effector Protein
Length = 327
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 246 LFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQFPSRHTGYTSSPIPPTQVA 305
L YR Y N + G+E+ + L+D++ E+EH D R G + Y
Sbjct: 78 LVYRTY--NLMQDGQESYVQSLFDQFNEREH--DQMVREGWEHTMARCY----------- 122
Query: 306 QSPLRFLLLHLFFMTSSF 323
SPLR+ L H M+S++
Sbjct: 123 -SPLRY-LFHCLQMSSAY 138
>pdb|3GE3|B Chain B, Crystal Structure Of The Reduced Toluene 4-Monooxygenase
Hd T201a Mutant Complex
pdb|3GE8|B Chain B, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3GE8|F Chain F, Toluene 4-Monooxygenase Hd T201a Diferric, Resting State
Complex
pdb|3I5J|B Chain B, Diferric Resting State Toluene 4-Monooxygenase Hd Complex
pdb|3I63|B Chain B, Peroxide Bound Toluene 4-Monooxygenase
Length = 327
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 246 LFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQFPSRHTGYTSSPIPPTQVA 305
L YR Y N + G+E+ + L+D++ E+EH D R G + Y
Sbjct: 78 LVYRTY--NLMQDGQESYVQSLFDQFNEREH--DQMVREGWEHTMARCY----------- 122
Query: 306 QSPLRFLLLHLFFMTSSF 323
SPLR+ L H M+S++
Sbjct: 123 -SPLRY-LFHCLQMSSAY 138
>pdb|3RMK|B Chain B, Toluene 4 Monooxygenase H With 4-bromophenol
pdb|3RMK|E Chain E, Toluene 4 Monooxygenase H With 4-bromophenol
Length = 306
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 246 LFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQFPSRHTGYTSSPIPPTQVA 305
L YR Y N + G+E+ + L+D++ E+EH D R G + Y
Sbjct: 77 LVYRTY--NLMQDGQESYVQSLFDQFNEREH--DQMVREGWEHTMARCY----------- 121
Query: 306 QSPLRFLLLHLFFMTSSF 323
SPLR+ L H M+S++
Sbjct: 122 -SPLRY-LFHCLQMSSAY 137
>pdb|3Q14|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Cresol
pdb|3Q2A|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
P-Aminobenzoate
pdb|3Q3M|B Chain B, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3M|F Chain F, Toluene 4 Monooxygenase Hd Complex With Inhibitor
4-Bromobenzoate
pdb|3Q3N|B Chain B, Toluene 4 Monooxygenase Hd Complex With P-Nitrophenol
pdb|3Q3O|B Chain B, Toluene 4 Monooxygenase Hd Complex With Phenol
Length = 307
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 246 LFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQFPSRHTGYTSSPIPPTQVA 305
L YR Y N + G+E+ + L+D++ E+EH D R G + Y
Sbjct: 78 LVYRTY--NLMQDGQESYVQSLFDQFNEREH--DQMVREGWEHTMARCY----------- 122
Query: 306 QSPLRFLLLHLFFMTSSF 323
SPLR+ L H M+S++
Sbjct: 123 -SPLRY-LFHCLQMSSAY 138
>pdb|3RI7|B Chain B, Toluene 4 Monooxygenase Hd Mutant G103l
Length = 305
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 246 LFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQFPSRHTGYTSSPIPPTQVA 305
L YR Y N + G+E+ + L+D++ E+EH D R G + Y
Sbjct: 77 LVYRTY--NLMQDGQESYVQSLFDQFNEREH--DQMVREGWEHTMARCY----------- 121
Query: 306 QSPLRFLLLHLFFMTSSF 323
SPLR+ L H M+S++
Sbjct: 122 -SPLRY-LFHCLQMSSAY 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.144 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,787,691
Number of Sequences: 62578
Number of extensions: 450580
Number of successful extensions: 789
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 10
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)