Query psy5379
Match_columns 341
No_of_seqs 259 out of 1653
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 01:04:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 98.8 8.9E-10 3.1E-14 105.5 0.7 100 73-174 129-276 (367)
2 1unk_A Colicin E7; immunity pr 37.7 17 0.00058 27.4 2.2 50 121-170 33-85 (87)
3 1fr2_A Colicin E9 immunity pro 37.3 18 0.00061 27.2 2.2 50 121-170 32-84 (86)
4 1gxg_A Colicin E8 immunity pro 29.4 35 0.0012 25.4 2.7 49 122-170 32-83 (85)
5 3u43_A Colicin-E2 immunity pro 24.4 24 0.00081 26.9 1.0 52 121-172 32-86 (94)
6 3ts9_A Interferon-induced heli 16.5 1.1E+02 0.0036 24.9 3.3 27 261-287 111-137 (138)
7 2k0d_X IMME7, colicin-E7 immun 15.4 47 0.0016 25.6 0.8 48 123-170 42-99 (101)
8 2c5k_P Vacuolar protein sortin 13.1 1.2E+02 0.0042 17.3 2.0 12 272-283 10-21 (26)
9 3hyk_A Holo-[acyl-carrier-prot 12.2 1.9E+02 0.0064 22.4 3.7 22 262-283 48-69 (122)
10 3e56_A Putative uncharacterize 12.1 2.6E+02 0.009 20.9 4.1 29 240-268 38-66 (113)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=98.78 E-value=8.9e-10 Score=105.50 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=61.9
Q ss_pred CccEEEEeCCCCcccccchhhhhc---------------cccCCchhH---HHHHH--Hhhhhcccc-----------cc
Q psy5379 73 ESRTLVLVNHQSTGDVPMLMAAFN---------------PRRGVLPNI---MWIMD--RIFKYTNFG-----------VG 121 (341)
Q Consensus 73 ~e~~liisNHqS~~D~~vl~~~l~---------------~~~~~ip~~---~w~m~--~if~~r~~~-----------~d 121 (341)
++++|++|||||.+|.+++...+. +++...|.. +++.. +++..+... .+
T Consensus 129 ~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g~~l~cI~~kk~id~~p~l~r~~~r~n 208 (367)
T 1iuq_A 129 GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKAN 208 (367)
T ss_dssp TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHTSEEEECCCGGGTTSSGGGHHHHHHHH
T ss_pred CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhhhheeeEEecccCCCcchhhhhhhHHH
Confidence 689999999999999988765542 223323333 32211 233222211 13
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCCcCcc----c-------cHHHH----HHHHhcCCC--CcCeeec
Q psy5379 122 IAQLRQHIRSSYIPRKRKWMMLFPEGGFLRK----R-------REASQ----RYAAKNNLP--QCQYVSL 174 (341)
Q Consensus 122 ~~~l~~~l~~~~~~~~~~~lliFPEGT~~~~----~-------~~~S~----~fA~k~glp--~l~~vL~ 174 (341)
.+++++..+.++ ..+..|+|||||||..+ . +.+|. .+|++.|.| ++.=++.
T Consensus 209 ~ksl~~~~~~Lk--~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~ 276 (367)
T 1iuq_A 209 TRSLKEMALLLR--GGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL 276 (367)
T ss_dssp HHHHHHHHHHHH--HCCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHH--cCCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE
Confidence 334444333332 23669999999998763 1 56788 999999999 7766664
No 2
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=37.67 E-value=17 Score=27.35 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=38.9
Q ss_pred cHHHHHHHHHhhcCCCCceEEEEeeCCC--cCccc-cHHHHHHHHhcCCCCcC
Q psy5379 121 GIAQLRQHIRSSYIPRKRKWMMLFPEGG--FLRKR-REASQRYAAKNNLPQCQ 170 (341)
Q Consensus 121 d~~~l~~~l~~~~~~~~~~~lliFPEGT--~~~~~-~~~S~~fA~k~glp~l~ 170 (341)
..+.+..++.++-..+.+.-||.|||.. .+++. .+...++-+++|+|-++
T Consensus 33 ~~d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 33 VLDVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFK 85 (87)
T ss_dssp HHHHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 4466777888887777888899999854 44554 67888899999999885
No 3
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=37.26 E-value=18 Score=27.16 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=37.7
Q ss_pred cHHHHHHHHHhhcCCCCceEEEEeeCCC--cCccc-cHHHHHHHHhcCCCCcC
Q psy5379 121 GIAQLRQHIRSSYIPRKRKWMMLFPEGG--FLRKR-REASQRYAAKNNLPQCQ 170 (341)
Q Consensus 121 d~~~l~~~l~~~~~~~~~~~lliFPEGT--~~~~~-~~~S~~fA~k~glp~l~ 170 (341)
+.+.+-.++.+....+.+.-||.+||.. .+++. .+...++-.++|+|-++
T Consensus 32 e~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 32 ELVKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 4566677777777667777789999743 44544 67888999999999885
No 4
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=29.36 E-value=35 Score=25.45 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhcCCCCceEEEEeeCCC--cCccc-cHHHHHHHHhcCCCCcC
Q psy5379 122 IAQLRQHIRSSYIPRKRKWMMLFPEGG--FLRKR-REASQRYAAKNNLPQCQ 170 (341)
Q Consensus 122 ~~~l~~~l~~~~~~~~~~~lliFPEGT--~~~~~-~~~S~~fA~k~glp~l~ 170 (341)
.+.+-.++.+....+.+.-||.+||.. .+++. .+...++-.++|+|-++
T Consensus 32 ~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 32 QDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHHTTCCTTTTHHHHSCCTTCCSSHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 566667777777667777789999743 44544 67888999999999886
No 5
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=24.37 E-value=24 Score=26.93 Aligned_cols=52 Identities=8% Similarity=0.013 Sum_probs=38.2
Q ss_pred cHHHHHHHHHhhcCCCCceEEEEeeCCC--cCccc-cHHHHHHHHhcCCCCcCee
Q psy5379 121 GIAQLRQHIRSSYIPRKRKWMMLFPEGG--FLRKR-REASQRYAAKNNLPQCQYV 172 (341)
Q Consensus 121 d~~~l~~~l~~~~~~~~~~~lliFPEGT--~~~~~-~~~S~~fA~k~glp~l~~v 172 (341)
..+.+-.++.+....+.+.-||.+||.. .+++. .+...++-+++|+|-++.-
T Consensus 32 e~d~ll~~fe~iteHP~gSDLIfyP~~~~e~SPEgIv~~IKeWRa~nG~pgFK~~ 86 (94)
T 3u43_A 32 DDNKLVREFERLTEHPDGSDLIYYPRDDREDSPEGIVKEIKEWRAANGKSGFKQG 86 (94)
T ss_dssp HHHHHHHHHHHHHCCTTTTHHHHSCCTTSCSSHHHHHHHHHHHHHHTTCCCCBCC
T ss_pred HHHHHHHHHHHhCCCCCccCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCccchhh
Confidence 3555666777776666777789999775 34554 6788899999999988653
No 6
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=16.47 E-value=1.1e+02 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.375 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5379 261 EALTRWLYDRWEEKEHMLDVFYRNGQF 287 (341)
Q Consensus 261 ~~l~~WL~~~w~eKD~lL~~f~~~g~F 287 (341)
++.++||.++|.||.+-|+..-.+|.+
T Consensus 111 d~ter~L~~lF~e~k~eL~~lA~~~~~ 137 (138)
T 3ts9_A 111 DETDEFLMNLFFDNKKMLKKLAENPKY 137 (138)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCGGG
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 356799999999999999999888764
No 7
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=15.37 E-value=47 Score=25.60 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCCceEEEEee-------CCC--cCccc-cHHHHHHHHhcCCCCcC
Q psy5379 123 AQLRQHIRSSYIPRKRKWMMLFP-------EGG--FLRKR-REASQRYAAKNNLPQCQ 170 (341)
Q Consensus 123 ~~l~~~l~~~~~~~~~~~lliFP-------EGT--~~~~~-~~~S~~fA~k~glp~l~ 170 (341)
+.+..++.++-..+++.-||.|| |+. .+++. .+.-.++-+++|+|-|+
T Consensus 42 d~Ll~hF~~iteHP~GSDLIfYP~~~~~~~~~~~e~sPEgIvk~IKeWRa~nGkPgFK 99 (101)
T 2k0d_X 42 DVLLEHFVKITEHPDGTALIYEAAARAAANPGGDGGGPEGIVKEIKEWRAANGKPGFK 99 (101)
T ss_dssp HHHHHHHHHHHCCTTHHHHHHHHHHHHHHCSSSTTSSGGGHHHHHHHHHHHHTCCCCB
T ss_pred HHHHHHHHHcCCCCCCCceeeecccccccCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 66777888877777888899999 554 44554 67788899999999885
No 8
>2c5k_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae}
Probab=13.13 E-value=1.2e+02 Score=17.30 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHh
Q psy5379 272 EEKEHMLDVFYR 283 (341)
Q Consensus 272 ~eKD~lL~~f~~ 283 (341)
.+|-.+|++||+
T Consensus 10 KdKR~lLkeyY~ 21 (26)
T 2c5k_P 10 KDRRLLLREFYN 21 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHh
Confidence 467788999986
No 9
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} SCOP: d.150.1.0
Probab=12.19 E-value=1.9e+02 Score=22.42 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy5379 262 ALTRWLYDRWEEKEHMLDVFYR 283 (341)
Q Consensus 262 ~l~~WL~~~w~eKD~lL~~f~~ 283 (341)
.-.+||..||.-||+.++....
T Consensus 48 ~~~~~la~rwaaKEA~~KAlg~ 69 (122)
T 3hyk_A 48 RLTEFVAGRFAAKEAYSKAVGT 69 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHHhcc
Confidence 3467999999999999998875
No 10
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Probab=12.06 E-value=2.6e+02 Score=20.89 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=20.3
Q ss_pred CCeEEEEEEEEEeCCCCCCChHHHHHHHH
Q psy5379 240 DPCTTTLFYRLYPINSVPSGKEALTRWLY 268 (341)
Q Consensus 240 ~p~~v~vhvr~~pi~~ip~d~~~l~~WL~ 268 (341)
.-|++|+..|.+.-+.+..|.|++-+=|-
T Consensus 38 yeceihlkfrlieeksll~DreQLlqvll 66 (113)
T 3e56_A 38 YECEIHLKFRLIEEKSLLSDREQLLQVLL 66 (113)
T ss_dssp EEEEEEEEEEECCCGGGSSCHHHHHHHHH
T ss_pred EEEEEEEeeeeehhhhhccCHHHHHHHHH
Confidence 45778888888877777778776654433
Done!