RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5379
(341 letters)
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 96.5 bits (241), Expect = 6e-24
Identities = 50/204 (24%), Positives = 82/204 (40%), Gaps = 46/204 (22%)
Query: 56 FFHWLLA----MAGDDIRACIESRTLVLVNHQSTGDVPMLMAAFNPRRGVLPNI-MWIMD 110
F WL + GD+ + E R L++ NH+S D +L + R G L + + + D
Sbjct: 3 LFEWLSGVKVVVYGDEPKLPKE-RALIISNHRSEVDWLVLWMLAD-RFGRLGRLKIVLKD 60
Query: 111 RIFKYTNFGVG----------------IAQLRQHIRSSYIPRKRKWMMLFPEGGFL-RKR 153
+ G G +++ ++ + W+++FPEG ++
Sbjct: 61 SLKYPPLGGWGWQLGEFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEK 120
Query: 154 REASQRYAAKNNLPQCQYVSLPRLGALGAIFEELHPEEEEICTDKHGNTAIFPPDNDDTL 213
+E SQ +A KN LP ++V LPR AI E L D +
Sbjct: 121 KERSQEFAEKNGLPPLKHVLLPRTKGFVAILETLR----------------------DAV 158
Query: 214 SWVLDITIGYPQGNPIDLPTIIMG 237
V D+TI YP G P +++G
Sbjct: 159 DAVYDVTIAYPDGKPPSEQRLLLG 182
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 80.1 bits (198), Expect = 9e-17
Identities = 75/305 (24%), Positives = 122/305 (40%), Gaps = 73/305 (23%)
Query: 30 TYFIWMLVFQPLRWFKPRLY-------WTIEGKFF--HWLLAM---------------AG 65
T F+ ++ P+ RL+ T FF WL A+ +G
Sbjct: 30 TAFMMLVYLAPVSAVLLRLFSVHYSRKAT---SFFFGSWL-ALWPFLFEKINKTKVVFSG 85
Query: 66 DDIRACIESRTLVLVNHQSTGDVPMLMAAFNPRRGVLPNIMWIM-DRIFKYTNFGVGI-- 122
D + E R L++ NH++ D M + R+G L I +++ + K FG
Sbjct: 86 DKVPP--EERVLLIANHRTEVDW-MYLWDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHI 142
Query: 123 --------------AQLRQHIRSSYIPRKRKWMMLFPEG-GFLRKRREASQRYAAKNNLP 167
+RQ + S PR W+ LFPEG + + + SQ++AA++ LP
Sbjct: 143 FEFIPVERKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLP 202
Query: 168 QCQYVSLPRLGALGAIFEELHPEEEEICTDKHGNTAIFPPDNDDTLSWVLDITIGYPQGN 227
V LP+ + +EL +L V D+TIGY
Sbjct: 203 ILNNVLLPKTKGFVSCLQELR----------------------CSLDAVYDVTIGYKHRC 240
Query: 228 PIDLPTIIMGQRDPCTTTLFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQF 287
P + G DP + R P+ +P+ ++ ++ WL DR++ K+ +L FY G F
Sbjct: 241 P-SFLDNVFGI-DPSEVHIHIRRIPLKQIPTSEDEVSAWLMDRFQLKDQLLSDFYAQGHF 298
Query: 288 PSRHT 292
P+ T
Sbjct: 299 PNEGT 303
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 47.8 bits (114), Expect = 4e-06
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 26/151 (17%)
Query: 140 WMMLFPEGG-FLRKRREASQRYAAKNNLPQCQYVSLPRLGALGAIFEELHPEEEEICTDK 198
W+ LF EG F + + A+Q YAA LP + V +PR + +
Sbjct: 166 WLALFVEGTRFTQAKLLAAQEYAASRGLPVPRNVLIPRTKGFVSAVSNMRS--------- 216
Query: 199 HGNTAIFPPDNDDTLSWVLDITIGYPQGNPIDLPTII-MGQRDPCTTTLFYRLYPINSVP 257
F P + D+T+ P+G P PT++ + + + + + + +P
Sbjct: 217 ------FVPA-------IYDVTVAVPKGQPA--PTMLRIFRGQSSVVHVHIKRHSMKELP 261
Query: 258 SGKEALTRWLYDRWEEKEHMLDVFYRNGQFP 288
+ + +W D + K+ +LD + F
Sbjct: 262 ETDDGIAQWCKDVFVAKDALLDKHFAEDTFG 292
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 41.6 bits (98), Expect = 6e-05
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 24/96 (25%)
Query: 77 LVLVNHQSTGDVPMLMAAFNPRRGVLPNIMWIMDRIFKYTNF------------------ 118
LV+ NHQS D +L A + G + ++ + Y
Sbjct: 2 LVVANHQSFLDPLVLSALLPRKLG---RVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNG 58
Query: 119 GVGIAQLRQHIRSSYIPRKRKWMMLFPEGGFLRKRR 154
A LR+ + ++ +W+++FPEG R +
Sbjct: 59 RKARAALREAVELL---KEGEWLLIFPEGTRSRPGK 91
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 33.8 bits (78), Expect = 0.069
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 77 LVLVNHQSTGDVPMLMAAFNPR-----------RGVLPNIMWIMDRIF----KYTNFGVG 121
+++ NHQS D +L AA L ++ ++ I +
Sbjct: 27 IIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIPFLGWLLRLLGAIPIDRGNGRSAREA 86
Query: 122 IAQLRQHIRSSYIPRKRKWMMLFPEG 147
+ + + + ++ + +++FPEG
Sbjct: 87 LREAIEAL------KEGESVVIFPEG 106
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 34.1 bits (79), Expect = 0.076
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 15/74 (20%)
Query: 216 VLDITIGYPQGNP--IDLPTIIMGQRDPCTTTLFYRLYPINSVPSG--------KEALTR 265
+LD+TI YP G P DL + G+ + RL PI G + +
Sbjct: 223 LLDVTIVYPDGRPSFWDL---LSGRVKK--IVVHVRLLPIPEELIGDYFNDKEFRRRFQQ 277
Query: 266 WLYDRWEEKEHMLD 279
WL W+EK+ +++
Sbjct: 278 WLNQLWQEKDQLIE 291
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 31.3 bits (72), Expect = 0.89
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 44 FKPRLYWTIEGKF 56
F P YWTI+ +F
Sbjct: 185 FVPEEYWTIDAEF 197
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 30.6 bits (69), Expect = 0.97
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 77 LVLVNHQSTGDVPMLMAAFNPRRGVLPNIMWIMDR-IFKYTNFGVGIAQLRQHIRSSYIP 135
LV+ NHQS D +L A R V ++ + +FK G + L P
Sbjct: 67 LVVANHQSFLDPLLLSLALPRRGPVR----FVAKKELFKVPLLGWLLRLLGAIPVDRENP 122
Query: 136 RKR-------------KWMMLFPEG 147
+ +++FPEG
Sbjct: 123 DDETLRAAVARLKAGGRSLVIFPEG 147
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 28.4 bits (64), Expect = 2.4
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 77 LVLVNHQSTGDVPMLMAAFNPRR--------------GVLPNIMWIMDRIF-KYTNFGVG 121
+V+ NHQS D +L R +L +M ++ IF N
Sbjct: 17 IVVANHQSYLDPLLLSLLLPKRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRKNAKDA 76
Query: 122 IAQLRQHIRSSYIPRKRKWMMLFPEGGFLRKRR 154
L + R+ + +++FPEG R
Sbjct: 77 ANTLEYLVELL---REGELVLIFPEGTRSRGGE 106
>gnl|CDD|132786 cd06876, PX_MDM1p, The phosphoinositide binding Phox Homology
domain of yeast MDM1p. The PX domain is a
phosphoinositide binding (PI) module present in many
proteins with diverse functions such as cell signaling,
vesicular trafficking, protein sorting, and lipid
modification, among others. Yeast MDM1p is a
filament-like protein localized in punctate structures
distributed throughout the cytoplasm. It plays an
important role in nuclear and mitochondrial transmission
to daughter buds. Members of this subfamily show similar
domain architectures as some sorting nexins (SNXs). Some
members are similar to SNX19 in that they contain an
N-terminal PXA domain, a central PX domain, and a
C-terminal domain that is conserved in some SNXs. Others
are similar to SNX13 and SNX14, which also harbor these
three domains as well as a regulator of G protein
signaling (RGS) domain in between the PXA and PX
domains. SNXs make up the largest group among PX domain
containing proteins. They are involved in regulating
membrane traffic and protein sorting in the endosomal
system. The PX domain of SNXs binds PIs and targets the
protein to PI-enriched membranes. SNXs differ from each
other in PI-binding specificity and affinity, and the
presence of other protein-protein interaction domains,
which help determine subcellular localization and
specific function in the endocytic pathway.
Length = 133
Score = 28.0 bits (63), Expect = 3.6
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 13/61 (21%)
Query: 107 WIMDRIFKYTNFGVGIAQLRQHIRSSY-------IPRKRKWMMLFPEGGFLRKRREASQR 159
W++ R +Y+ F +L ++++ Y P+KRK + + + + +RR+A ++
Sbjct: 57 WVVAR--RYSEF----LELHKYLKKRYPGVLKLDFPQKRKISLKYSKTLLVEERRKALEK 110
Query: 160 Y 160
Y
Sbjct: 111 Y 111
>gnl|CDD|233103 TIGR00722, ttdA_fumA_fumB, hydro-lyases, Fe-S type,
tartrate/fumarate subfamily, alpha region. A number of
Fe-S cluster-containing hydro-lyases share a conserved
motif, including argininosuccinate lyase,
adenylosuccinate lyase, aspartase, class I fumarate
hydratase (fumarase), and tartrate dehydratase (see
PROSITE:PDOC00147). This model represents a subset of
closely related proteins or modules, including the E.
coli tartrate dehydratase alpha chain and the N-terminal
region of the class I fumarase (where the C-terminal
region is homologous to the tartrate dehydratase beta
chain). The activity of archaeal proteins in this
subfamily has not been established.
Length = 273
Score = 28.6 bits (64), Expect = 4.8
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 103 PNIMWIMDRIFKYTNFGVGIAQLRQHIRSSYIPRKRKWMMLFPEGG 148
PN + + R N G+G+ Q I +P +++FP+G
Sbjct: 99 PNAVHPLTRENTGDNTGLGVPQ----IHVEIVPGDELEIVVFPKGA 140
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff
are likely to have the same general activity. However,
there is variation among characterized members as to
whether the acyl group can be donated by acyl carrier
protein or coenzyme A, and in the length and saturation
of the donated acyl group.
1-acyl-sn-glycerol-3-phosphate acyltransferase is also
called 1-AGP acyltransferase, lysophosphatidic acid
acyltransferase, and LPA acyltransferase [Fatty acid
and phospholipid metabolism, Biosynthesis].
Length = 130
Score = 27.3 bits (61), Expect = 5.5
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 74 SRTLVLVNHQSTGDVPMLMAAFNPR 98
S LV+ NHQS D L AAF P
Sbjct: 16 SPVLVVANHQSNLDPLTLSAAFPPP 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.143 0.467
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,656,219
Number of extensions: 1841868
Number of successful extensions: 1855
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1839
Number of HSP's successfully gapped: 30
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)