RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5379
         (341 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 32.3 bits (73), Expect = 0.077
 Identities = 24/245 (9%), Positives = 54/245 (22%), Gaps = 48/245 (19%)

Query: 77  LVLVNHQSTGDVPMLMAAFNPRRGVLPNIMWIM--DRIFKYTNFGVGIAQLRQH--IRSS 132
           +++ NHQ+  D  ++          +      +  DR+                      
Sbjct: 133 VLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKK 192

Query: 133 YIP-------------------------RKRKWMMLFPEGGFLRKRREASQRYAAKNNLP 167
           ++                             + + + P GG  R      + Y A  +  
Sbjct: 193 HMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFD-- 250

Query: 168 QCQYVSLPRLGALGAIFEELHPEEEEICTDKHGNTAIFPPDNDDTLSWVLDITIGYPQGN 227
                             +       +         I PP           + I   +  
Sbjct: 251 -------ASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPP--------PSQVEIEIGEKR 295

Query: 228 PIDLPTIIMGQRDPCTTTLFYRLYPINSVPSGKEALTRWLYDRWEEKEHMLDVFYRNGQF 287
            I      +      +           +    +EA ++ L+D    + ++L       Q 
Sbjct: 296 VIAFNGAGLSVAPEISFEEI--AATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQG 353

Query: 288 PSRHT 292
               T
Sbjct: 354 LGAST 358


>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 339

 Score = 29.4 bits (65), Expect = 0.71
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 182 AIFEELHPEEEEICTDKHGNTAI 204
            +F E+     ++  D  GN  I
Sbjct: 53  LVFNEILQAAYQLMVDVFGNYVI 75


>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
           flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
           scrofa) [TaxId: 9823]}
          Length = 380

 Score = 28.7 bits (63), Expect = 1.0
 Identities = 18/127 (14%), Positives = 32/127 (25%), Gaps = 6/127 (4%)

Query: 26  YCIPTYFIWMLVFQPLRWFKPRLYWTIEGKFFHWLLAMA---GDDIRACIESRTLVLVNH 82
                Y I + +   L       Y    G    W+   A   G ++     +  ++    
Sbjct: 113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED 172

Query: 83  QSTGDVPMLMAAFNPRRGVLPNIMWIMDRIFKYTNFGVGIAQLRQHIRSSYIPRKRKWMM 142
            S   +                    ++   K T F  G      H+      +      
Sbjct: 173 GSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGC---HGHLAKQLYKKFDLRAN 229

Query: 143 LFPEGGF 149
             P+GGF
Sbjct: 230 CEPQGGF 236


>d1cy9a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 260

 Score = 26.1 bits (56), Expect = 7.1
 Identities = 3/15 (20%), Positives = 6/15 (40%)

Query: 44 FKPRLYWTIEGKFFH 58
          F P  +W ++     
Sbjct: 1  FVPEEFWEVDASTTT 15


>d2fnoa1 a.45.1.1 (A:88-236) Hypothetical protein
           AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId:
           358]}
          Length = 149

 Score = 25.3 bits (55), Expect = 7.2
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 110 DRIFKYTNFGVGIAQLRQHIRSSYIPRKRKWMMLFPEGG 148
           D + + T  G G           ++PR +KW+ +F + G
Sbjct: 20  DVLDELTLNG-GREMWTPEKWQEFVPRLQKWIRIFADTG 57


>d1ahsa_ b.19.1.1 (A:) RDV p8, central (top) domain {African horse
           sickness virus [TaxId: 40050]}
          Length = 126

 Score = 24.8 bits (54), Expect = 8.8
 Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 21/82 (25%)

Query: 37  VFQPLRWFKPRLYWTIEGKFFHWLLAMAGDDIRACIESRTL-VLVNHQSTGDVPMLMAAF 95
           V Q  R++ P                  G      I S    V ++  + G V    A  
Sbjct: 10  VQQSGRYYVP-----------------QGRTRGGYINSNIAEVCMDAGAAGQV---NALL 49

Query: 96  NPRRGVLPNIMWIMDRIFKYTN 117
            PRRG    I ++   +  + +
Sbjct: 50  APRRGDAVMIYFVWRPLRIFCD 71


>d1i5pa1 b.18.1.3 (A:473-633) delta-Endotoxin, C-terminal domain
           {Bacillus thuringiensis subsp. kurstaki, CRY2AA [TaxId:
           29339]}
          Length = 161

 Score = 25.3 bits (55), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 286 QFPSRHTGYTSSPIPPTQV 304
             P  +TG+T SPI  TQV
Sbjct: 14  LAPEDYTGFTISPIHATQV 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.467 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,434,768
Number of extensions: 70488
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 13
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)