BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy538
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
++ GLPWT+ K F +CPVS F+P+ +I DP + LWLKVNGELRQ+ T M+F
Sbjct: 112 ECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIP 171
Query: 62 DLISYISQHMTLEPYDLILTG 82
+ISY+S+ +TLE D+ILTG
Sbjct: 172 YIISYVSKIITLEEGDIILTG 192
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKSTTGDMLFKTGD 62
++ G PW K FD +CP+S FIP E DP + L L VNGE RQ+ TT D + K
Sbjct: 114 KKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADXIHKIVP 173
Query: 63 LISYISQHMTLEPYDLILTG 82
LI+Y S+ TL+ D++LTG
Sbjct: 174 LIAYXSKFFTLKAGDVVLTG 193
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 72.8 bits (177), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 4/76 (5%)
Query: 9 PWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLK--VNGELRQKSTTGDMLFKTGDLISY 66
P KG DT P+ F+ E++DP D LWL+ VNGELRQ+ T ML+ +L+ +
Sbjct: 141 PPIRAKGRDTFLPLGPFLVVEEVEDPQD--LWLRAYVNGELRQEGHTSRMLYSVAELLEF 198
Query: 67 ISQHMTLEPYDLILTG 82
IS+ MTLEPYD++LTG
Sbjct: 199 ISEFMTLEPYDVLLTG 214
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDL 63
++ G PW K FD +CP+S FIP E D L L +NGE+RQ+ T D + L
Sbjct: 115 KKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDXITPIIPL 174
Query: 64 ISYISQHMTLEPYDLILTG 82
ISY S+ TL D++LTG
Sbjct: 175 ISYXSRFFTLRAGDIVLTG 193
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 62.0 bits (149), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 22 VSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILT 81
+S +P+ I DP ++ L VNGELRQ+ TT D++F LI+Y+S+ MTL P D+I T
Sbjct: 334 LSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIAT 393
Query: 82 G 82
G
Sbjct: 394 G 394
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 9 PWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 68
P K D CP+ + + + + D++ ++ ++NG T D+ L+S +S
Sbjct: 105 PAIKAKCRDGFCPIGETVA---LSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALS 161
Query: 69 QHMTLEPYDLILTG 82
+ TL P D IL G
Sbjct: 162 EFATLNPGDAILLG 175
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 62.0 bits (149), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIPEHEIKDPD--DVPLWLKVNGELRQKSTTGDMLFKTG 61
+E G PW K FD ACP+++F+ + + + + L L+ NG+ +Q+ ++ + LF
Sbjct: 111 KEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEXLFPIL 170
Query: 62 DLISYISQHMTLEPYDLILTG 82
LI++ S+H +L+P D+ILTG
Sbjct: 171 PLIAHXSEHFSLQPGDVILTG 191
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 3/81 (3%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
H R G WT KG DT CP+ +I DP D+ + +VNG++RQ+S T +L G
Sbjct: 155 HQRADGQ-WTRAKGHDTFCPLGPWIVTD--LDPADLEIRTEVNGQVRQRSRTSLLLHDVG 211
Query: 62 DLISYISQHMTLEPYDLILTG 82
++ ++S MTL P D+ILTG
Sbjct: 212 AIVEWVSAVMTLLPGDVILTG 232
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 3 AREHGLPWTVGKGFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTTGDML 57
A++ GLPWT+ KGFDT P+S + + D + VNG+LRQ T L
Sbjct: 131 AKKKGLPWTISKGFDTFXPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLXL 190
Query: 58 FKTGDLISYISQHMTLEPYDLILTG 82
++ +IS ++LEP D+ILTG
Sbjct: 191 HPLHKILQHISTXISLEPGDIILTG 215
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 10 WTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 69
WT KG DT CPV +I DP D+ L +VNG ++Q + T M+ G ++ +IS
Sbjct: 165 WTRAKGHDTFCPVGPWIVTD--VDPADLELRTEVNGAVKQHARTSLMIHDVGAIVEWISA 222
Query: 70 HMTLEPYDLILTG 82
MTL P DLILTG
Sbjct: 223 VMTLLPGDLILTG 235
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 1 KHAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKT 60
+ ++ L W K D P+ ++ E ++ +P D + VNG LRQ+ T M+F
Sbjct: 149 RDVQKKDLQWVRAKSADKFLPLGPWL-ETDL-NPQDTWVRTYVNGTLRQEGHTSQMIFSV 206
Query: 61 GDLISYISQHMTLEPYDLILTG 82
+++SYIS MTLEP D++LTG
Sbjct: 207 AEILSYISTFMTLEPLDVVLTG 228
>pdb|4DBF|A Chain A, Crystal Structures Of Cg1458
pdb|4DBF|B Chain B, Crystal Structures Of Cg1458
pdb|4DBH|A Chain A, Crystal Structure Of Cg1458 With Inhibitor
pdb|4DBH|B Chain B, Crystal Structure Of Cg1458 With Inhibitor
Length = 288
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 10 WTVGKGFDTACPVSDFIPEHEIK--DPDDVPLWLKV--NGE--LRQKSTTGDMLFKTGDL 63
W KG DT P+ +I E +I D D++P+ ++ +GE L+Q S + M+ K G++
Sbjct: 180 WARAKGIDTFGPIGPWI-ETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEI 238
Query: 64 ISYISQHMTLEPYDLILTG 82
I +I+ MTL P D+I TG
Sbjct: 239 IEFITASMTLLPGDVIATG 257
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 13 GKGFDTACPVSDFI------PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISY 66
GKG+ T CP ++ E D L++NGELRQ +T DM +++
Sbjct: 213 GKGYPTFCPTGPWLFTTGSDTTFETFD-----FELRINGELRQSGSTVDMTLGFAEVVET 267
Query: 67 ISQHMTLEPYDLILTGKAG 85
+S + L D+ILTG G
Sbjct: 268 VSATIALRAGDIILTGTPG 286
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 50 KSTTGDML-FKTGDLISYISQHMTLEPYDLILTGKAGFI 87
K+T D L FK GD++ +++ Y L GK GFI
Sbjct: 10 KATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFI 48
>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|3GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|2GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, 15 Structures
pdb|1GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain
Complexed With A Ten-Residue Peptide Derived From Sos
Direct Refinement Against Noes, J-Couplings, And 1h And
13c Chemical Shifts, Minimized Average Structure
pdb|1GBR|A Chain A, Orientation Of Peptide Fragments From Sos Proteins Bound
To The N-Terminal Sh3 Domain Of Grb2 Determined By Nmr
Spectroscopy
Length = 74
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 50 KSTTGDML-FKTGDLISYISQHMTLEPYDLILTGKAGFI 87
K+T D L FK GD++ +++ Y L GK GFI
Sbjct: 19 KATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFI 57
>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant
Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10
Structures
Length = 56
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 50 KSTTGDML-FKTGDLISYISQHMTLEPYDLILTGKAGFI 87
K+T D L FK GD++ +++ Y L GK GFI
Sbjct: 10 KATADDELSFKRGDILKVLNEESDQNWYKAELNGKDGFI 48
>pdb|1S2O|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 At 1.40 A Resolution
pdb|1TJ3|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In A Closed Conformation
pdb|1TJ4|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose
pdb|1TJ5|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose And
Phosphate
pdb|1U2S|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Glucose
pdb|1U2T|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp. Pcc6803 In Complex With Sucrose6p
pdb|2B1Q|A Chain A, X-ray Structure Of The Sucrose-phosphatase (spp) From
Synechocystis Sp.pcc6803 In Complex With Trehalose
pdb|2B1R|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Cellobiose
pdb|2D2V|A Chain A, X-Ray Structure Of The Sucrose-Phosphatase (Spp) From
Synechocystis Sp.Pcc6803 In Complex With Maltose
Length = 244
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 61 GDLISYISQHMTLEPYDLILTGKAGF-ILMFQQSPHSV 97
G+ Y+ QH+ +EP ++ G +G I +F+ S V
Sbjct: 164 GNATQYLQQHLAMEPSQTLVCGDSGNDIGLFETSARGV 201
>pdb|3E0S|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
pdb|3E0S|B Chain B, Crystal Structure Of An Uncharacterized Protein From
Chlorobium Tepidum
Length = 326
Score = 26.2 bits (56), Expect = 5.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 15 GFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKS 51
GF T+ + +FI E E+ DP+ PL + G++ K+
Sbjct: 145 GFMTS--LKEFIAEGELPDPETAPLAAEPTGDVAAKT 179
>pdb|4HHR|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
pdb|4HHS|A Chain A, Crystal Structure Of Fatty Acid Alpha-dioxygenase
(arabidopsis Thaliana)
Length = 652
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 1 KHAREHGLPWTVGKGFDTACPVSDFIPEH-EIKDPDDVP 38
K + HG+P+++ + F + + +P+ I D DDVP
Sbjct: 379 KKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVP 417
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 12 VGKGFDTACP-VSDFIPEHEIKDPDDVPLWLKVNGE---LRQKSTTGDM 56
+G+ F CP + D + H D D+V W K+ L ++ GD+
Sbjct: 43 LGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDL 91
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine
pdb|1BBW|A Chain A, Lysyl-Trna Synthetase (Lyss)
Length = 504
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 3 AREHGLPWTVGKGFDTACPVSDFIPEHEIKD 33
A EHGLP T G G V F H I+D
Sbjct: 463 ALEHGLPPTAGLGIGIDRMVMLFTNSHTIRD 493
>pdb|2E9X|B Chain B, The Crystal Structure Of Human Gins Core Complex
pdb|2E9X|F Chain F, The Crystal Structure Of Human Gins Core Complex
Length = 185
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 34 PDDVPLWLKVNGELRQK 50
P +VPLWL +N + RQK
Sbjct: 41 PVEVPLWLAINLKQRQK 57
>pdb|2Q9Q|A Chain A, The Crystal Structure Of Full Length Human Gins Complex
pdb|2Q9Q|E Chain E, The Crystal Structure Of Full Length Human Gins Complex
Length = 191
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 34 PDDVPLWLKVNGELRQK 50
P +VPLWL +N + RQK
Sbjct: 47 PVEVPLWLAINLKQRQK 63
>pdb|2EHO|C Chain C, Crystal Structure Of Human Gins Complex
pdb|2EHO|G Chain G, Crystal Structure Of Human Gins Complex
pdb|2EHO|K Chain K, Crystal Structure Of Human Gins Complex
Length = 186
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 34 PDDVPLWLKVNGELRQK 50
P +VPLWL +N + RQK
Sbjct: 42 PVEVPLWLAINLKQRQK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,363,197
Number of Sequences: 62578
Number of extensions: 133498
Number of successful extensions: 273
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 28
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)