Query psy538
Match_columns 97
No_of_seqs 152 out of 1078
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 01:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0179 MhpD 2-keto-4-pentenoa 100.0 2.4E-37 5.1E-42 227.1 8.3 96 1-96 150-248 (266)
2 KOG1535|consensus 100.0 1.5E-34 3.2E-39 203.7 7.2 95 2-96 106-200 (217)
3 TIGR02303 HpaG-C-term 4-hydrox 100.0 2.3E-32 5E-37 198.6 7.5 96 1-96 131-228 (245)
4 PRK15203 4-hydroxyphenylacetat 100.0 1E-31 2.2E-36 207.9 8.2 91 2-96 99-189 (429)
5 PRK10691 hypothetical protein; 100.0 2E-30 4.3E-35 185.8 8.2 91 6-96 114-205 (219)
6 PRK12764 hypothetical protein; 99.9 5.1E-28 1.1E-32 190.2 8.3 88 8-96 117-205 (500)
7 PRK15203 4-hydroxyphenylacetat 99.9 5.4E-28 1.2E-32 187.2 8.2 95 2-96 312-408 (429)
8 TIGR02305 HpaG-N-term 4-hydrox 99.9 3.4E-27 7.4E-32 167.2 7.5 91 6-96 101-191 (205)
9 PF01557 FAA_hydrolase: Fumary 99.9 7.8E-26 1.7E-30 160.7 3.2 90 7-96 106-202 (218)
10 PLN02856 fumarylacetoacetase 99.9 1.4E-23 3E-28 162.1 8.6 93 1-95 244-369 (424)
11 TIGR01266 fum_ac_acetase fumar 99.9 4E-23 8.6E-28 159.3 8.0 85 9-95 247-361 (415)
12 TIGR03220 catechol_dmpE 2-oxop 99.7 1.6E-17 3.4E-22 121.3 7.4 88 8-96 147-241 (255)
13 PRK11342 mhpD 2-keto-4-penteno 99.7 1.6E-16 3.4E-21 116.4 6.4 77 19-96 163-245 (262)
14 TIGR02312 HpaH 2-oxo-hepta-3-e 99.5 1.7E-13 3.7E-18 100.8 6.7 76 20-96 171-252 (267)
15 TIGR03218 catechol_dmpH 4-oxal 99.1 7.8E-10 1.7E-14 81.3 8.0 77 19-96 167-249 (263)
16 COG3971 2-keto-4-pentenoate hy 98.8 8.1E-09 1.8E-13 75.8 5.7 76 20-96 166-247 (264)
17 KOG2843|consensus 98.3 1.1E-06 2.4E-11 66.0 4.5 77 11-89 251-357 (420)
18 COG3970 Fumarylacetoacetate (F 97.9 2.2E-05 4.7E-10 59.4 4.7 75 10-84 234-317 (379)
19 PF11010 DUF2848: Protein of u 97.1 0.00063 1.4E-08 48.4 4.0 76 20-96 95-177 (194)
20 cd01617 DCX Ubiquitin-like dom 89.5 0.41 8.8E-06 29.1 2.6 50 38-87 2-55 (80)
21 PRK06488 sulfur carrier protei 83.5 3.3 7.2E-05 23.7 4.2 25 39-68 1-25 (65)
22 KOG1379|consensus 80.0 0.94 2E-05 34.7 1.2 52 34-85 188-255 (330)
23 PRK06083 sulfur carrier protei 79.8 8.5 0.00018 23.7 5.3 32 33-68 13-44 (84)
24 PRK07696 sulfur carrier protei 73.7 8.3 0.00018 22.4 3.9 27 39-68 1-27 (67)
25 PRK07440 hypothetical protein; 70.8 15 0.00033 21.6 4.6 27 38-68 4-30 (70)
26 PRK05659 sulfur carrier protei 68.7 15 0.00033 20.8 4.2 10 71-80 49-58 (66)
27 PRK08053 sulfur carrier protei 67.4 16 0.00035 20.9 4.1 11 71-81 49-59 (66)
28 PRK06944 sulfur carrier protei 62.6 26 0.00055 19.7 4.7 10 40-49 2-11 (65)
29 PF02538 Hydantoinase_B: Hydan 60.3 7.5 0.00016 31.4 2.4 51 43-96 46-101 (527)
30 TIGR03882 cyclo_dehyd_2 bacter 58.8 4.9 0.00011 28.2 1.0 28 2-29 158-185 (193)
31 KOG3276|consensus 57.7 6.5 0.00014 26.0 1.3 20 61-80 73-92 (125)
32 COG3802 GguC Uncharacterized p 54.7 21 0.00045 27.0 3.7 68 11-79 209-282 (333)
33 PRK15175 Vi polysaccharide exp 50.0 18 0.00039 28.0 2.9 38 37-82 198-235 (355)
34 PF00498 FHA: FHA domain; Int 49.5 14 0.00031 20.7 1.8 15 68-82 54-68 (68)
35 cd03701 IF2_IF5B_II IF2_IF5B_I 46.6 12 0.00026 23.2 1.3 19 69-87 23-41 (95)
36 cd00565 ThiS ThiaminS ubiquiti 44.9 56 0.0012 18.4 3.9 14 71-84 48-61 (65)
37 PRK15450 signal transduction p 44.5 17 0.00036 22.6 1.6 21 60-80 27-47 (85)
38 PRK05863 sulfur carrier protei 44.0 38 0.00082 19.3 3.0 26 39-68 1-26 (65)
39 smart00537 DCX Domain in the D 43.9 34 0.00074 20.9 3.0 52 35-86 4-60 (89)
40 COG0146 HyuB N-methylhydantoin 42.2 18 0.00039 29.8 1.9 43 44-86 48-95 (563)
41 cd03703 aeIF5B_II aeIF5B_II: T 41.6 18 0.00039 23.5 1.5 18 69-86 23-40 (110)
42 TIGR01683 thiS thiamine biosyn 41.5 60 0.0013 18.3 3.6 14 71-84 47-60 (64)
43 PF02938 GAD: GAD domain; Int 41.1 22 0.00049 21.9 1.8 41 39-82 44-84 (95)
44 PF03990 DUF348: Domain of unk 40.8 56 0.0012 17.1 4.4 38 38-80 1-38 (43)
45 PF11064 DUF2865: Protein of u 40.4 13 0.00029 24.3 0.8 20 62-81 94-113 (116)
46 PRK11479 hypothetical protein; 38.2 20 0.00044 26.9 1.5 37 42-84 40-76 (274)
47 PF15656 Tox-HDC: Toxin with a 36.5 60 0.0013 21.5 3.3 31 58-88 12-43 (119)
48 PLN02666 5-oxoprolinase 36.2 30 0.00064 31.3 2.4 50 44-96 789-843 (1275)
49 PF14894 Lsm_C: Lsm C-terminal 34.5 37 0.00079 20.1 1.9 21 60-80 1-21 (64)
50 PRK10030 hypothetical protein; 34.4 27 0.00058 24.7 1.6 16 68-83 16-31 (197)
51 cd03702 IF2_mtIF2_II This fami 34.3 25 0.00055 22.0 1.3 18 69-86 23-40 (95)
52 COG4301 Uncharacterized conser 33.4 41 0.00089 25.6 2.4 26 58-83 167-193 (321)
53 PF00877 NLPC_P60: NlpC/P60 fa 33.3 23 0.0005 21.7 1.0 15 69-83 48-62 (105)
54 PF01052 SpoA: Surface present 33.1 18 0.0004 21.1 0.5 17 68-84 24-40 (77)
55 PF02946 GTF2I: GTF2I-like rep 32.5 45 0.00098 20.3 2.1 22 71-92 30-51 (76)
56 COG3862 Uncharacterized protei 32.0 49 0.0011 21.6 2.3 62 19-80 29-98 (117)
57 PRK06033 hypothetical protein; 31.2 41 0.00089 20.5 1.8 17 68-84 23-39 (83)
58 PF15092 UPF0728: Uncharacteri 31.1 62 0.0013 20.3 2.6 22 38-59 51-72 (88)
59 PF01191 RNA_pol_Rpb5_C: RNA p 30.8 26 0.00057 21.2 0.9 12 68-79 44-55 (74)
60 PRK11433 aldehyde oxidoreducta 30.8 2.1E+02 0.0046 20.8 5.9 46 34-91 47-92 (217)
61 PRK15078 polysaccharide export 30.0 97 0.0021 24.0 4.1 39 37-83 211-251 (379)
62 TIGR02219 phage_NlpC_fam putat 29.8 29 0.00062 22.7 1.0 13 71-83 75-87 (134)
63 PF02814 UreE_N: UreE urease a 29.2 28 0.0006 19.9 0.8 16 67-82 45-60 (65)
64 PRK09570 rpoH DNA-directed RNA 29.1 33 0.00071 21.1 1.1 13 68-80 47-59 (79)
65 PF05423 Mycobact_memb: Mycoba 28.7 94 0.002 20.9 3.4 20 34-53 107-126 (140)
66 KOG1939|consensus 27.5 76 0.0016 28.0 3.3 45 44-88 771-818 (1247)
67 COG0309 HypE Hydrogenase matur 27.5 40 0.00086 26.1 1.6 16 70-85 158-174 (339)
68 PF13550 Phage-tail_3: Putativ 27.1 34 0.00075 22.2 1.1 15 70-84 137-151 (164)
69 cd01674 Homoaconitase_Swivel H 26.8 1.1E+02 0.0023 20.5 3.4 33 59-91 23-61 (129)
70 PF05382 Amidase_5: Bacterioph 26.5 49 0.0011 22.4 1.7 15 71-85 74-88 (145)
71 PF01555 N6_N4_Mtase: DNA meth 26.4 49 0.0011 22.3 1.8 25 55-80 172-196 (231)
72 cd00986 PDZ_LON_protease PDZ d 26.2 41 0.0009 19.3 1.2 10 72-81 24-33 (79)
73 TIGR03439 methyl_EasF probable 25.7 55 0.0012 24.9 2.0 26 58-83 170-197 (319)
74 PLN02584 5'-methylthioadenosin 25.4 2.2E+02 0.0048 20.6 5.1 27 71-97 86-114 (249)
75 TIGR02754 sod_Ni_protease nick 25.3 45 0.00098 19.8 1.3 9 72-80 11-19 (90)
76 cd00060 FHA Forkhead associate 25.1 72 0.0016 18.6 2.2 15 69-83 79-93 (102)
77 PF04571 Lipin_N: lipin, N-ter 24.8 1.1E+02 0.0024 19.9 3.1 35 14-48 34-71 (110)
78 PRK11524 putative methyltransf 24.7 67 0.0015 23.5 2.3 26 54-80 188-213 (284)
79 cd00991 PDZ_archaeal_metallopr 24.7 47 0.001 19.3 1.3 13 69-81 24-36 (79)
80 PF03300 Tenui_NS4: Tenuivirus 24.6 45 0.00098 24.8 1.3 44 12-58 153-196 (283)
81 PF13180 PDZ_2: PDZ domain; PD 24.6 38 0.00082 19.7 0.8 12 70-81 29-40 (82)
82 PF00717 Peptidase_S24: Peptid 24.5 34 0.00074 19.0 0.6 8 73-80 11-18 (70)
83 PRK11507 ribosome-associated p 24.5 49 0.0011 19.8 1.3 14 69-82 49-62 (70)
84 PF13533 Biotin_lipoyl_2: Biot 24.3 31 0.00067 18.7 0.3 14 68-81 19-32 (50)
85 PF08194 DIM: DIM protein; In 23.1 97 0.0021 16.2 2.1 17 67-83 15-31 (36)
86 smart00560 LamGL LamG-like jel 23.0 67 0.0015 20.5 1.8 18 35-52 73-90 (133)
87 TIGR02480 fliN flagellar motor 22.9 72 0.0016 18.8 1.8 16 69-84 25-40 (77)
88 PRK08364 sulfur carrier protei 22.9 1.6E+02 0.0036 16.8 5.0 11 70-80 52-62 (70)
89 PRK10838 spr outer membrane li 22.8 66 0.0014 22.7 1.9 13 71-83 127-139 (190)
90 cd00136 PDZ PDZ domain, also c 22.6 55 0.0012 18.0 1.2 11 71-81 29-39 (70)
91 PF13403 Hint_2: Hint domain 22.2 54 0.0012 21.9 1.3 14 70-83 18-31 (147)
92 cd00990 PDZ_glycyl_aminopeptid 22.1 54 0.0012 18.6 1.2 11 71-81 28-38 (80)
93 KOG2915|consensus 21.9 79 0.0017 24.2 2.2 23 64-86 94-117 (314)
94 cd00989 PDZ_metalloprotease PD 21.7 55 0.0012 18.4 1.1 12 70-81 27-38 (79)
95 PF02594 DUF167: Uncharacteris 21.7 93 0.002 18.7 2.1 20 61-80 43-62 (77)
96 PF13621 Cupin_8: Cupin-like d 21.4 38 0.00081 23.4 0.4 13 69-81 209-221 (251)
97 TIGR03027 pepcterm_export puta 21.1 51 0.0011 22.2 1.0 26 56-81 133-160 (165)
98 COG2104 ThiS Sulfur transfer p 21.0 1.9E+02 0.0041 16.9 3.8 27 38-68 2-28 (68)
99 PF11347 DUF3148: Protein of u 20.9 47 0.001 19.6 0.7 25 71-95 22-46 (63)
100 PF00564 PB1: PB1 domain; Int 20.8 1.8E+02 0.004 16.6 4.6 43 37-81 2-45 (84)
101 PF09235 Ste50p-SAM: Ste50p, s 20.7 74 0.0016 19.4 1.5 24 56-79 4-27 (75)
102 smart00037 CNX Connexin homolo 20.7 48 0.001 17.2 0.6 17 9-25 17-33 (34)
103 KOG3568|consensus 20.6 2E+02 0.0042 23.9 4.3 47 36-82 404-450 (603)
104 smart00228 PDZ Domain present 20.5 62 0.0013 18.2 1.2 11 71-81 42-52 (85)
105 PRK06437 hypothetical protein; 20.4 1.4E+02 0.003 17.2 2.6 12 38-49 36-47 (67)
106 PRK08433 flagellar motor switc 20.1 86 0.0019 20.3 1.8 17 69-85 49-65 (111)
107 PRK11470 hypothetical protein; 20.0 70 0.0015 22.9 1.6 14 71-84 7-20 (200)
No 1
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.4e-37 Score=227.06 Aligned_cols=96 Identities=46% Similarity=0.799 Sum_probs=91.9
Q ss_pred Chhh--hcCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCC
Q psy538 1 KHAR--EHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYD 77 (97)
Q Consensus 1 ~~~~--~~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGD 77 (97)
|++| ++++||.++|+||+|||+|||+ +.+++.++.++.|+++||||++|+++|++|+|++++||+|+|+++||+|||
T Consensus 150 Rd~Q~~~~~~~w~~aK~~d~~~Pigp~iv~~~e~~d~~~l~l~~~vNGe~~Q~g~t~~Mi~~i~~lI~~lS~~~tL~pGD 229 (266)
T COG0179 150 RDLQMEEKGRPWTRAKGFDTFAPVGPWIVTKDEISDPQNLPLSLRVNGEVRQRGNTSDMIFSIPELIAYLSRFMTLEPGD 229 (266)
T ss_pred hcchhhhhcCCcccccccCCCCCceeEEeccccCCCCccceEEEEECCEEEecCcHHHcccCHHHHHHHHhCCcccCCCC
Confidence 6888 8999999999999999999997 678888899999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCcccccCCCcc
Q psy538 78 LILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 78 vI~tGTp~g~~~~~~g~~~ 96 (97)
||+||||+|++.+++||+.
T Consensus 230 vI~TGTP~Gvg~l~~GD~v 248 (266)
T COG0179 230 VILTGTPSGVGFLKPGDVV 248 (266)
T ss_pred EEEeCCCCCcccCCCCCEE
Confidence 9999999999999999964
No 2
>KOG1535|consensus
Probab=100.00 E-value=1.5e-34 Score=203.75 Aligned_cols=95 Identities=48% Similarity=0.790 Sum_probs=91.3
Q ss_pred hhhhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEc
Q psy538 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 2 ~~~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~t 81 (97)
+.+++|.||..||+||+|||+|++++.+.++|+.++.+.++|||+.+|+++|++|+|+++.+|+|+|+++||+|||||+|
T Consensus 106 ~ak~~g~pw~l~K~~Dtf~Pis~~vpk~~v~Dp~nl~L~l~VnG~~~Q~g~T~~mifkip~li~~is~~~tL~~GDvILT 185 (217)
T KOG1535|consen 106 EAKKKGLPWTLGKGFDTFTPISAIVPKEKVPDPHNLWLWLRVNGETRQTGNTSLMIFKIPDLISRLSQIMTLEPGDVILT 185 (217)
T ss_pred hhhhcCCCeeeccccCccCcccccccHHHCCCccceEEEEEEccEEEecCchhhheecHHHHHHHHhhheeecCCCEEEe
Confidence 45678999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCcc
Q psy538 82 GKAGFILMFQQSPHS 96 (97)
Q Consensus 82 GTp~g~~~~~~g~~~ 96 (97)
|||.|++++++||+.
T Consensus 186 GTP~GVg~v~~Gd~i 200 (217)
T KOG1535|consen 186 GTPEGVGEVKPGDVI 200 (217)
T ss_pred cCCCccccccCCCEE
Confidence 999999999999964
No 3
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.97 E-value=2.3e-32 Score=198.61 Aligned_cols=96 Identities=35% Similarity=0.479 Sum_probs=89.7
Q ss_pred Chhhhc-CCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCE
Q psy538 1 KHAREH-GLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDL 78 (97)
Q Consensus 1 ~~~~~~-~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDv 78 (97)
|++|++ ++||.++|+||+|||+|||+ +++++.|+.++.+++++||+++|++++++|+|++.+||+|+|++++|+||||
T Consensus 131 Rd~q~~~~~~~~~aK~~D~~~plGp~i~t~~~~~d~~~l~i~l~vNGe~~q~g~t~~ml~~v~~Li~~ls~~~tL~pGDv 210 (245)
T TIGR02303 131 RDYLENYYRPNLRVKNRDTFTPIGPWIVDKEDVEDPMNLWLRTYVNGELTQEGNTSDMIFSVAELIEYLSEFMTLEPGDV 210 (245)
T ss_pred HHHHhhhcCCcccccCCCCCEeeCCcCCCHHHcCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCCcCCCCE
Confidence 456644 78999999999999999997 5788888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCcc
Q psy538 79 ILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 79 I~tGTp~g~~~~~~g~~~ 96 (97)
|+||||.+++++++||+.
T Consensus 211 IlTGTp~g~~~l~~GD~v 228 (245)
T TIGR02303 211 ILTGTPKGLSDVKPGDVV 228 (245)
T ss_pred EEcCCCCCCeEcCCCCEE
Confidence 999999999999999975
No 4
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.97 E-value=1e-31 Score=207.91 Aligned_cols=91 Identities=23% Similarity=0.322 Sum_probs=84.2
Q ss_pred hhhhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEc
Q psy538 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 2 ~~~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~t 81 (97)
++|. ++||.++|+||+|||+|||+.. +++.+++|+++|||+++|++++++|+|++++||+|+|+++||+|||||+|
T Consensus 99 d~q~-~~~~~~~K~~D~~~p~Gp~i~~---~~~~~l~i~~~vNGe~~Q~~~t~~Mi~~~~~lis~lS~~~tL~pGDvI~T 174 (429)
T PRK15203 99 EESF-YRPAIKAKCRDGFCPIGETVAL---SNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILL 174 (429)
T ss_pred hhcc-cCCcccccCCCCCcccCCeEEC---CCccceEEEEEECCEEEecCCHHHcCCCHHHHHHHHhCCCCcCCCCEEEc
Confidence 4443 5799999999999999999853 35788999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCcc
Q psy538 82 GKAGFILMFQQSPHS 96 (97)
Q Consensus 82 GTp~g~~~~~~g~~~ 96 (97)
|||+|++.+++||+.
T Consensus 175 GTP~g~~~l~~GD~v 189 (429)
T PRK15203 175 GTPQARVEIQPGDRV 189 (429)
T ss_pred CCCCCceECCCCCEE
Confidence 999999999999985
No 5
>PRK10691 hypothetical protein; Provisional
Probab=99.97 E-value=2e-30 Score=185.78 Aligned_cols=91 Identities=41% Similarity=0.688 Sum_probs=85.3
Q ss_pred cCCCcccccCCCCCcccCCcccCCCC-CCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCC
Q psy538 6 HGLPWTVGKGFDTACPVSDFIPEHEI-KDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKA 84 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v~~~~~-~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp 84 (97)
+++||.++|+||+|||+|||++.+++ .|+.++++++++||+++|++++++|+|+++++|+|+|++++|+|||||+||||
T Consensus 114 ~~~~~~~~K~~D~~~~~gp~i~~~~~~~d~~~l~i~l~vNG~~~q~g~~~~mi~~~~~lia~ls~~~tL~aGDvI~TGTp 193 (219)
T PRK10691 114 AGQPWEKAKAFDNSCPISGFIPVAEFTGDPQNTTLGLSVNGEVRQQGNTADMIHPIVPLIAYMSRFFTLRAGDVVLTGTP 193 (219)
T ss_pred ccCCccccccCCCCcCcCCcEEchhccCCccccEEEEEECCEEEEecCHHHhccCHHHHHHHHhcCCccCCCCEEEcCCC
Confidence 46799999999999999999855554 57889999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcc
Q psy538 85 GFILMFQQSPHS 96 (97)
Q Consensus 85 ~g~~~~~~g~~~ 96 (97)
.+++++++||++
T Consensus 194 ~g~~~l~~GD~v 205 (219)
T PRK10691 194 EGVGPLQSGDEL 205 (219)
T ss_pred CCCEECCCCCEE
Confidence 999999999985
No 6
>PRK12764 hypothetical protein; Provisional
Probab=99.95 E-value=5.1e-28 Score=190.15 Aligned_cols=88 Identities=32% Similarity=0.355 Sum_probs=83.9
Q ss_pred CCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCCC
Q psy538 8 LPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGF 86 (97)
Q Consensus 8 ~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g 86 (97)
.+|.++|+||+|||+|||+ +.+++ |+.++++++++||+++|++++++|+|++.+||+|||++++|+|||||+||||.|
T Consensus 117 ~~~~~~K~~Dg~~plGp~iv~~~~~-d~~~l~i~~~vNGe~~Q~g~t~dmi~~v~~LI~~lS~~~tL~pGDvIlTGTp~g 195 (500)
T PRK12764 117 GSNLRSKGGDGFTPIGPALISARGV-DPAQLRVRTWVNGELVQDDTTEDLLFPFAQLVADLSQLLTLEEGDVILTGTPAG 195 (500)
T ss_pred CCcccccccCccEecCCCccCcccc-CccceEEEEEECCEEEEeccHHHhcCCHHHHHHHHhcCCCcCCCCEEEeCCCCC
Confidence 4789999999999999986 67777 899999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcc
Q psy538 87 ILMFQQSPHS 96 (97)
Q Consensus 87 ~~~~~~g~~~ 96 (97)
++++++||+.
T Consensus 196 ~~~l~pGD~v 205 (500)
T PRK12764 196 SSVAAPGDVV 205 (500)
T ss_pred CeecCCCCEE
Confidence 9999999975
No 7
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.95 E-value=5.4e-28 Score=187.17 Aligned_cols=95 Identities=36% Similarity=0.436 Sum_probs=88.4
Q ss_pred hhhh-cCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEE
Q psy538 2 HARE-HGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLI 79 (97)
Q Consensus 2 ~~~~-~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI 79 (97)
++|+ .+.+|.++|+||+|||+|||+ +.+++.|+.++.+++++||+++|++++++|+|++.++|+|+|++++|+|||+|
T Consensus 312 d~q~~~~~~w~~~K~~d~~~plGp~~v~~d~~~d~~~l~i~l~vNG~~vq~g~t~~m~~~v~~li~~ls~~~tL~aGDvI 391 (429)
T PRK15203 312 DYLENYYRPNLRVKSRDGLTPILSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMI 391 (429)
T ss_pred hhhhhhcCCceEeccCCCCcCCCCCEeChhhcCCccceEEEEEECCEEEEeeCHHHhccCHHHHHHHHhcCCCcCCCCEE
Confidence 4443 367999999999999999986 77878899999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCcc
Q psy538 80 LTGKAGFILMFQQSPHS 96 (97)
Q Consensus 80 ~tGTp~g~~~~~~g~~~ 96 (97)
+||||.|++++++||++
T Consensus 392 ~TGTp~g~~~l~pGD~v 408 (429)
T PRK15203 392 ATGTPKGLSDVVPGDEV 408 (429)
T ss_pred EeCCCCCCeECCCCCEE
Confidence 99999999999999975
No 8
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.94 E-value=3.4e-27 Score=167.24 Aligned_cols=91 Identities=26% Similarity=0.403 Sum_probs=86.3
Q ss_pred cCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCC
Q psy538 6 HGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 85 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~ 85 (97)
+..+|..+|+||+++++|||++.+++.|+.++.+++++||+.+|++++++|+|++.+||+|+|++++|+|||||+||||.
T Consensus 101 ~~~~~~~~k~~dg~~~lGp~v~~~~~~d~~~~~~~l~vng~~~~~g~~~~~~~~~~~li~~ls~~~~L~aGdvI~TGT~~ 180 (205)
T TIGR02305 101 YYRPAIKAKCRDGFCPIGPEVPLSAIGNPDELTIYTYINGKPAQSNNTSNLVRSAAQLISELSEFMTLNPGDVLLLGTPE 180 (205)
T ss_pred ccCcchhhcccCCccccCCcccHHHcCCccccEEEEEECCEEEEeeCHHHhCcCHHHHHHHHhCCCCcCCCCEEEeCCCC
Confidence 35689999999999999999877787789999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcc
Q psy538 86 FILMFQQSPHS 96 (97)
Q Consensus 86 g~~~~~~g~~~ 96 (97)
++.++++||++
T Consensus 181 g~~~l~~Gd~v 191 (205)
T TIGR02305 181 ARVEVGPGDRV 191 (205)
T ss_pred CCeecCCCCEE
Confidence 99999999975
No 9
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=99.92 E-value=7.8e-26 Score=160.66 Aligned_cols=90 Identities=36% Similarity=0.592 Sum_probs=81.2
Q ss_pred CCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCC
Q psy538 7 GLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 85 (97)
Q Consensus 7 ~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~ 85 (97)
+.+|..+|+||+++++|||+ +++++.++.++++++++||+.+|++++++|++++.++|+|+|+.++|+|||+|+||||.
T Consensus 106 ~~~~~~~k~~~~~~~~Gp~~v~~~~~~~~~~~~~~l~vnG~~~~~~~~~~~~~~~~~ll~~ls~~~~L~aGdvI~TGt~~ 185 (218)
T PF01557_consen 106 GLPWIADKSFDGSLVLGPWVVPPDELPDLRDLRLRLRVNGEVVQSGSTSDMLGDPAELLAWLSRGLTLRAGDVILTGTPT 185 (218)
T ss_dssp THSSHHHHSSTTCEEEEEEEEEHSSHSGTTSEEEEEEETTEEEEEEEGGGBSSSHHHHHHHHHTTS-B-TTEEEEEEESS
T ss_pred ccchhhccCcCcceeecccccccccccCcceEEEEEEECCEEEEeccchhHHhhHHHHHHHHhCCCCCCcceEEEcCCcC
Confidence 44899999999999999997 78888788999999999999999999999999999999999999999999999999998
Q ss_pred Ccc------cccCCCcc
Q psy538 86 FIL------MFQQSPHS 96 (97)
Q Consensus 86 g~~------~~~~g~~~ 96 (97)
|+. .+++||++
T Consensus 186 G~~~~~~~~~l~~Gd~v 202 (218)
T PF01557_consen 186 GVGARPPPVPLQPGDRV 202 (218)
T ss_dssp TSEGSSCCEEEBTT-EE
T ss_pred CCCcccccccCCCCcEE
Confidence 765 89999975
No 10
>PLN02856 fumarylacetoacetase
Probab=99.90 E-value=1.4e-23 Score=162.09 Aligned_cols=93 Identities=16% Similarity=0.163 Sum_probs=75.4
Q ss_pred Chhhh---cCCCcccccCCCCCcccCCcc-cCCCCC--------------------CCCceeEEEEE--------CCEEE
Q psy538 1 KHARE---HGLPWTVGKGFDTACPVSDFI-PEHEIK--------------------DPDDVPLWLKV--------NGELR 48 (97)
Q Consensus 1 ~~~~~---~~~~w~~aK~~d~~~~lGp~v-~~~~~~--------------------d~~~~~i~~~v--------NG~~~ 48 (97)
|++|+ ....|.++|+||++ +|||| +.+++. +..++.|.++| ||+++
T Consensus 244 RDiQ~wE~~plgpf~gKsF~t~--igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~ 321 (424)
T PLN02856 244 RDIQKWEYVPLGPFLGKSFATT--ISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVV 321 (424)
T ss_pred hhhhhhhcccCCcccccCCCCC--CcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeE
Confidence 45554 23467799999875 99997 677763 12245666666 66899
Q ss_pred EeccCCccCCCHHHHHHH-HHcccccCCCCEEEcCCCCCcccccCCCc
Q psy538 49 QKSTTGDMLFKTGDLISY-ISQHMTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 49 q~~~t~~m~~~~~~li~~-lS~~~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
|++++++|+|+++++|+| +|++++|+|||||+||||+|++++..|+.
T Consensus 322 q~~nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~l 369 (424)
T PLN02856 322 CRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCL 369 (424)
T ss_pred EcCCHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCE
Confidence 999999999999999996 68999999999999999999999888874
No 11
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=99.89 E-value=4e-23 Score=159.31 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=74.1
Q ss_pred CcccccCCCCCcccCCcc-cCCCCCC---------C-------------CceeEEEEECCE------EEEeccCCccCCC
Q psy538 9 PWTVGKGFDTACPVSDFI-PEHEIKD---------P-------------DDVPLWLKVNGE------LRQKSTTGDMLFK 59 (97)
Q Consensus 9 ~w~~aK~~d~~~~lGp~v-~~~~~~d---------~-------------~~~~i~~~vNG~------~~q~~~t~~m~~~ 59 (97)
.|.++|+||++ +|||| +.|++.+ + .++.+++++||+ ++|++++++|+|+
T Consensus 247 gpf~~KsF~ts--igPwIVT~daL~p~r~~~~~~dp~pl~yL~~~~~~~~~l~l~v~vnge~~~~~~~~q~~~~~~M~ws 324 (415)
T TIGR01266 247 GPFLAKSFGTT--ISPWVVPIDALEPFRVPNPKQDPKPLPYLCHDAPYTFDINLEVSLKGEGMSEPATICRSNFKHMYWT 324 (415)
T ss_pred CccccccCCCC--CcCeEeccccccccccccccccccccccccccCCCcceeEEEEEEecCcCcccceEEcCCHHhcCcC
Confidence 35599999996 99997 6787631 1 267888889987 7999999999999
Q ss_pred HHHHHHHHH-cccccCCCCEEEcCCCCCcccccCCCc
Q psy538 60 TGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 60 ~~~li~~lS-~~~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
++|+|+|+| ++++|+|||||+||||+|+++.+.|+.
T Consensus 325 ~~qlIah~S~~g~tL~pGDLi~TGTpsG~~~~~~G~~ 361 (415)
T TIGR01266 325 MLQQLAHHSVNGCNLRPGDLLGSGTISGSEPGSFGSM 361 (415)
T ss_pred HHHHHHHHhcCCcccCCCCEEEeCCCCCCcccCCCcE
Confidence 999999999 689999999999999999999888874
No 12
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=99.72 E-value=1.6e-17 Score=121.26 Aligned_cols=88 Identities=15% Similarity=0.197 Sum_probs=68.5
Q ss_pred CCcccccCCCC-CcccCCccc-CCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEE
Q psy538 8 LPWTVGKGFDT-ACPVSDFIP-EHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLIL 80 (97)
Q Consensus 8 ~~w~~aK~~d~-~~~lGp~v~-~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~ 80 (97)
.+|..||+.-+ ...+|+.+. ++.+ +...+.+++++||+.+|++++++|+++|.++|+||++ +++|+|||+|+
T Consensus 147 ~~~~~Ad~~~~~~~V~g~~~~~~~~~-~l~~~~~~l~vnG~~~~~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdiV~ 225 (255)
T TIGR03220 147 IQDTVADNASCGVFVLGDTRVDPRKL-DLALCGMVLEKNGEIVSTGAGAAALGSPVNAVAWLANTLGRLGIPLKAGEVIL 225 (255)
T ss_pred ccceeeecCCcceEEECCCcCCcccc-ChhhCceEEEECCEEEeecchhhccCCHHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 46777776211 122333321 1222 3455667899999999999999999999999999997 88999999999
Q ss_pred cCCCCCcccccCCCcc
Q psy538 81 TGKAGFILMFQQSPHS 96 (97)
Q Consensus 81 tGTp~g~~~~~~g~~~ 96 (97)
||||.++.++++||++
T Consensus 226 TGt~~g~~~v~~Gd~v 241 (255)
T TIGR03220 226 SGSLAALVPVKAGDNL 241 (255)
T ss_pred CCCCCCCeeCCCCCEE
Confidence 9999999999999975
No 13
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=99.66 E-value=1.6e-16 Score=116.43 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=67.6
Q ss_pred CcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcc-----cccCCCCEEEcCCCCCcccccC
Q psy538 19 ACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQH-----MTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 19 ~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~-----~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
...+|+.+ ..+++ |+.++.+++++||+.+|++++++|+++|.++|+||++. ++|+|||||+||||.++.++++
T Consensus 163 ~~VlG~~~~~~~~~-d~~~~~~~l~vng~~~q~g~~~~~lg~p~~~l~~L~~~l~~~g~~L~aGdvV~TGt~~~~~~l~~ 241 (262)
T PRK11342 163 VYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRAGDIILTGALGPMVAVNA 241 (262)
T ss_pred eEEECCCcCCcccC-ChhhCEEEEEECCEEEEEEcHHHhccCHHHHHHHHHHHHHHcCCCcCCCCEEEcCCCCCCeeCCC
Confidence 34567654 34444 77889999999999999999999999999999999876 6999999999999999999999
Q ss_pred CCcc
Q psy538 93 SPHS 96 (97)
Q Consensus 93 g~~~ 96 (97)
||++
T Consensus 242 Gd~v 245 (262)
T PRK11342 242 GDRF 245 (262)
T ss_pred CCEE
Confidence 9975
No 14
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=99.45 E-value=1.7e-13 Score=100.79 Aligned_cols=76 Identities=14% Similarity=0.126 Sum_probs=66.9
Q ss_pred cccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcc-----cccCCCCEEEcCCCCCcccccCC
Q psy538 20 CPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQH-----MTLEPYDLILTGKAGFILMFQQS 93 (97)
Q Consensus 20 ~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~-----~tL~pGDvI~tGTp~g~~~~~~g 93 (97)
..+|+.+ .++++ |+..+.+++++||+.+++|++++|+.+|.+.|+||++. .+|++||+|+|||+.++.++++|
T Consensus 171 ~v~G~~~~~~~~~-dl~~~~~~l~~nG~~~~~g~~~~~lg~P~~al~wL~~~l~~~G~~L~aGdiV~TGs~~~~~~v~~G 249 (267)
T TIGR02312 171 IVLGGRPVRPDAL-DLRWVGAILYRNGVVEETGLAAGVLNHPANGVAWLANKLAPWGETLEAGQVVLAGSFTRPVAARSG 249 (267)
T ss_pred EEECCCCCCcccc-ChhhcccEEEECCEEEEEechhhhcCCHHHHHHHHHHHHHHcCCCCCCCCEEECCCCCCceecCCC
Confidence 3778853 45554 77888899999999999999999999999999999864 59999999999999999999999
Q ss_pred Ccc
Q psy538 94 PHS 96 (97)
Q Consensus 94 ~~~ 96 (97)
+++
T Consensus 250 ~~~ 252 (267)
T TIGR02312 250 DTF 252 (267)
T ss_pred CEE
Confidence 975
No 15
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=99.06 E-value=7.8e-10 Score=81.27 Aligned_cols=77 Identities=9% Similarity=0.112 Sum_probs=67.4
Q ss_pred CcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEEcCCCCCcccccC
Q psy538 19 ACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 19 ~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
...+||.+ ..+.+ |+.++.+++++||+.+++|+.++...+|...+.||.+ +..|++||+|+||+..++.++.+
T Consensus 167 ~~vlG~~~~~~~~~-dl~~~~~~l~~~g~~v~~g~g~~~lG~P~~al~wL~~~l~~~G~~L~aG~iV~tGs~t~~~~v~~ 245 (263)
T TIGR03218 167 RFVTGGRAANVEDL-DLRTLGVVMEKNGEVVAMGAGAAVLGHPAAAVAMLANHLAERGEEIPAGSFIMSGGITEAVAVAP 245 (263)
T ss_pred eEEECCCCCCcccc-CHhhCcEEEEECCEEEEeecccccCCCHHHHHHHHHHHHHHcCCCCCCCCEEECCcCcCceecCC
Confidence 44788875 34443 7788899999999999999999999999999999974 67999999999999999999999
Q ss_pred CCcc
Q psy538 93 SPHS 96 (97)
Q Consensus 93 g~~~ 96 (97)
|+++
T Consensus 246 G~~~ 249 (263)
T TIGR03218 246 GDSV 249 (263)
T ss_pred CCEE
Confidence 9875
No 16
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=8.1e-09 Score=75.80 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=68.7
Q ss_pred cccCC-cccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccccCCCCEEEcCCCCCcccccCC
Q psy538 20 CPVSD-FIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMTLEPYDLILTGKAGFILMFQQS 93 (97)
Q Consensus 20 ~~lGp-~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~tL~pGDvI~tGTp~g~~~~~~g 93 (97)
..||| ++.++++ |...+..+++.||+++++|..+..+.+|..-++||++ +.+|+.||||+||.-.+..+.++|
T Consensus 166 ~ViG~~~~~~~~l-d~~~~~~~l~rng~~~e~g~~aavLghP~~a~~wLAn~~a~~G~~Lk~G~IVl~Gs~t~~v~~~~g 244 (264)
T COG3971 166 FVIGGRAVKPDDL-DLRNVGATLYRNGVEEETGVGAAVLGHPAAALAWLANKLAAYGVPLKAGDIVLTGSFTGPVPARPG 244 (264)
T ss_pred eEECCCCCCchhh-hhhhccceeeecCEEEEeeechhhcCCcHHHHHHHHHHHHHcCCCcccCcEEecCccCccccCCCC
Confidence 47886 5666666 7889999999999999999999999999999999984 899999999999999999999999
Q ss_pred Ccc
Q psy538 94 PHS 96 (97)
Q Consensus 94 ~~~ 96 (97)
|+.
T Consensus 245 d~~ 247 (264)
T COG3971 245 DTF 247 (264)
T ss_pred CEE
Confidence 974
No 17
>KOG2843|consensus
Probab=98.28 E-value=1.1e-06 Score=66.00 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=57.3
Q ss_pred ccccCCCCCcccCCcc-cCCCCC--------------------CCCceeEEEEEC----C----EEEEeccCCccCCCHH
Q psy538 11 TVGKGFDTACPVSDFI-PEHEIK--------------------DPDDVPLWLKVN----G----ELRQKSTTGDMLFKTG 61 (97)
Q Consensus 11 ~~aK~~d~~~~lGp~v-~~~~~~--------------------d~~~~~i~~~vN----G----~~~q~~~t~~m~~~~~ 61 (97)
+.||+|-+ .++||| +.+.+. +|-.+.|.+.|| | ..++..+...|+|.+.
T Consensus 251 FlaKsfgT--TvSPWVVp~~AL~Pf~v~Np~QdP~plpYL~hd~PftfDINL~Vslkpeg~~~~a~icKsNFKhlYWT~l 328 (420)
T KOG2843|consen 251 FLAKSFGT--TVSPWVVPTAALKPFVVDNPPQDPEPLPYLRHDIPFTFDINLEVSLKPEGQNEDALICKSNFKHLYWTPL 328 (420)
T ss_pred hhhhhccc--ccccceeeHhhcCccccCCCCCCCCCCcccccCCCceeeeeeEEEeccCCccccceeecccchhhhhhHH
Confidence 47999965 789996 433321 122344444442 2 3578889999999999
Q ss_pred HHHHHHH-cccccCCCCEEEcCCCCCccc
Q psy538 62 DLISYIS-QHMTLEPYDLILTGKAGFILM 89 (97)
Q Consensus 62 ~li~~lS-~~~tL~pGDvI~tGTp~g~~~ 89 (97)
+.|++.+ .++.|+|||++.+||.+|..+
T Consensus 329 QQlaHHtVnGCNLRpGDLlaSGTiSGpep 357 (420)
T KOG2843|consen 329 QQLAHHTVNGCNLRPGDLLASGTISGPEP 357 (420)
T ss_pred HHhhhcccccccCCccceeccccccCCCC
Confidence 9999987 689999999999999998765
No 18
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=97.88 E-value=2.2e-05 Score=59.41 Aligned_cols=75 Identities=20% Similarity=0.234 Sum_probs=58.2
Q ss_pred cccccCCCCCcccCCcc-cCCCCCCCCc---eeEEEEECCEE--EEe--ccCCccCCCHHHHHH-HHHcccccCCCCEEE
Q psy538 10 WTVGKGFDTACPVSDFI-PEHEIKDPDD---VPLWLKVNGEL--RQK--STTGDMLFKTGDLIS-YISQHMTLEPYDLIL 80 (97)
Q Consensus 10 w~~aK~~d~~~~lGp~v-~~~~~~d~~~---~~i~~~vNG~~--~q~--~~t~~m~~~~~~li~-~lS~~~tL~pGDvI~ 80 (97)
..+||....+|.+|||| ..||...+.+ .++++.|.||- .-+ .+++.|-+++++++. ++-+.....-|-+++
T Consensus 234 L~kaKdnnasCaiGPfIrlfDe~f~~~dv~~a~vtLkv~gedgf~l~G~snm~~isR~p~~l~~Q~l~~~hqyPDG~~lf 313 (379)
T COG3970 234 LSKAKDNNASCAIGPFIRLFDETFTIDDVKSAEVTLKVTGEDGFFLEGSSNMAEISRSPEELVIQALNRDHQYPDGFALF 313 (379)
T ss_pred cccccccCccccccceEEeecCCCChhhhhhceEEEEEEccCceEEeccccHHhhccCHHHHHHHHhccCCCCCCceeEE
Confidence 35788899999999997 5677655554 44999998874 334 457899998887655 556789999999999
Q ss_pred cCCC
Q psy538 81 TGKA 84 (97)
Q Consensus 81 tGTp 84 (97)
+||.
T Consensus 314 lGTm 317 (379)
T COG3970 314 LGTM 317 (379)
T ss_pred eeee
Confidence 9994
No 19
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function.
Probab=97.15 E-value=0.00063 Score=48.35 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=58.2
Q ss_pred cccCCc-ccCCCCCC-CCceeEEEE--ECCE--EEEeccCCccCCCHHHHHHHHH-cccccCCCCEEEcCCCCCcccccC
Q psy538 20 CPVSDF-IPEHEIKD-PDDVPLWLK--VNGE--LRQKSTTGDMLFKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 20 ~~lGp~-v~~~~~~d-~~~~~i~~~--vNG~--~~q~~~t~~m~~~~~~li~~lS-~~~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
.|+++- ...+++.+ .+.+.++.+ .||+ +.|+|+.+.| .+|.+||+.+. ....+.+|-++++||.+-.+.+++
T Consensus 95 Kpva~~~W~~~dV~dhWD~l~Lrsw~~~dg~~~lYQeGtla~l-l~p~~ll~~~~~~~~~~~~g~~m~~GT~~~~g~~~~ 173 (194)
T PF11010_consen 95 KPVAREAWRLDDVADHWDELELRSWITEDGERVLYQEGTLAAL-LPPADLLERLGEGRGDLPEGTAMFCGTVPAIGGIRP 173 (194)
T ss_pred ccchhhcCcHHHHHhhhhheeEEEEEeeCCCEEEEeecchhhc-CCHHHHHHhhhccCCCCCCCEEEEEeccccccCccc
Confidence 477773 24455543 456777666 4665 5799999865 58999999999 678899999999999888888888
Q ss_pred CCcc
Q psy538 93 SPHS 96 (97)
Q Consensus 93 g~~~ 96 (97)
++++
T Consensus 174 a~~f 177 (194)
T PF11010_consen 174 ADRF 177 (194)
T ss_pred cceE
Confidence 8764
No 20
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=89.50 E-value=0.41 Score=29.08 Aligned_cols=50 Identities=12% Similarity=0.019 Sum_probs=40.5
Q ss_pred eEEEEECCEEEEecc----CCccCCCHHHHHHHHHcccccCCCCEEEcCCCCCc
Q psy538 38 PLWLKVNGELRQKST----TGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFI 87 (97)
Q Consensus 38 ~i~~~vNG~~~q~~~----t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g~ 87 (97)
.|.++.||+....|. ......+++.++.++++.+.|.+|-|=---||.|.
T Consensus 2 ~I~~~rNGD~~~~g~~~~i~~~~~~sfd~lL~~lt~~l~l~~~~Vr~lyt~~g~ 55 (80)
T cd01617 2 RVVVYRNGDPFFKGVRLLVNRRRFKSFDALLDDLTEKVQLDPGAVRKLYTLDGG 55 (80)
T ss_pred EEEEEECCCCCCCCEEEEEChhhhCCHHHHHHHHHHHhCCCCCcEEEEEcCCCC
Confidence 467888998776664 24567899999999999999999998887788773
No 21
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=83.49 E-value=3.3 Score=23.73 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=17.1
Q ss_pred EEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 39 LWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 39 i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
|++.+||+.++- ..+ ++.+|++++.
T Consensus 1 m~i~~Ng~~~~~---~~~--tl~~Ll~~l~ 25 (65)
T PRK06488 1 MKLFVNGETLQT---EAT--TLALLLAELD 25 (65)
T ss_pred CEEEECCeEEEc---CcC--cHHHHHHHcC
Confidence 467888888775 222 6888887763
No 22
>KOG1379|consensus
Probab=80.04 E-value=0.94 Score=34.71 Aligned_cols=52 Identities=19% Similarity=0.226 Sum_probs=40.1
Q ss_pred CCceeEEEEECCEEEEeccCCccCCCHHHHHHHH--------H--------cccccCCCCEEEcCCCC
Q psy538 34 PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYI--------S--------QHMTLEPYDLILTGKAG 85 (97)
Q Consensus 34 ~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~l--------S--------~~~tL~pGDvI~tGTp~ 85 (97)
+-+-.+.+..||+++++..-.+..|+.+..|+-- + -.+.|++||||+.+|-+
T Consensus 188 LGDSGF~VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~GDvIilATDG 255 (330)
T KOG1379|consen 188 LGDSGFLVVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKGDVIILATDG 255 (330)
T ss_pred ccCcceEEEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCCCEEEEeccc
Confidence 3455677788999999998888888877555433 2 26889999999999964
No 23
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=79.77 E-value=8.5 Score=23.68 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=23.0
Q ss_pred CCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 33 DPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 33 d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
......|.+.|||+..+=... -++.+||+.+.
T Consensus 13 ~~~~~~m~I~VNG~~~~~~~~----~tl~~LL~~l~ 44 (84)
T PRK06083 13 GAAMVLITISINDQSIQVDIS----SSLAQIIAQLS 44 (84)
T ss_pred CCCCceEEEEECCeEEEcCCC----CcHHHHHHHcC
Confidence 456778999999998764321 25888888765
No 24
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=73.68 E-value=8.3 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.366 Sum_probs=13.0
Q ss_pred EEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 39 LWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 39 i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
|.+++||+.++-... .-++.++++.+.
T Consensus 1 m~I~vNG~~~~~~~~---~~tv~~lL~~l~ 27 (67)
T PRK07696 1 MNLKINGNQIEVPES---VKTVAELLTHLE 27 (67)
T ss_pred CEEEECCEEEEcCCC---cccHHHHHHHcC
Confidence 356677775532111 123566665543
No 25
>PRK07440 hypothetical protein; Provisional
Probab=70.83 E-value=15 Score=21.57 Aligned_cols=27 Identities=37% Similarity=0.509 Sum_probs=16.5
Q ss_pred eEEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 38 PLWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 38 ~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
.|.+++||+.++-... -++.+|+..+.
T Consensus 4 ~m~i~vNG~~~~~~~~----~tl~~lL~~l~ 30 (70)
T PRK07440 4 PITLQVNGETRTCSSG----TSLPDLLQQLG 30 (70)
T ss_pred ceEEEECCEEEEcCCC----CCHHHHHHHcC
Confidence 4788888887653221 24667776553
No 26
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=68.67 E-value=15 Score=20.78 Aligned_cols=10 Identities=20% Similarity=0.225 Sum_probs=5.3
Q ss_pred cccCCCCEEE
Q psy538 71 MTLEPYDLIL 80 (97)
Q Consensus 71 ~tL~pGDvI~ 80 (97)
..|+.||-|-
T Consensus 49 ~~l~~gD~ve 58 (66)
T PRK05659 49 TALREGDVVE 58 (66)
T ss_pred ccCCCCCEEE
Confidence 4456666553
No 27
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=67.36 E-value=16 Score=20.95 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=6.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|+.||-|--
T Consensus 49 ~~L~~gD~Iei 59 (66)
T PRK08053 49 HIVQDGDQILL 59 (66)
T ss_pred cccCCCCEEEE
Confidence 34666666543
No 28
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=62.64 E-value=26 Score=19.68 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=6.0
Q ss_pred EEEECCEEEE
Q psy538 40 WLKVNGELRQ 49 (97)
Q Consensus 40 ~~~vNG~~~q 49 (97)
++++||+.++
T Consensus 2 ~i~vNg~~~~ 11 (65)
T PRK06944 2 DIQLNQQTLS 11 (65)
T ss_pred EEEECCEEEE
Confidence 4566666654
No 29
>PF02538 Hydantoinase_B: Hydantoinase B/oxoprolinase; InterPro: IPR003692 An appreciable fraction of the sulphur present in mammals occurs in the form of glutathione. The synthesis of glutathione and its utilization take place by the reactions of the gamma-glutamyl cycle, which include those catalysed by gamma-glutamylcysteine and glutathione synthetases, gamma-glutamyl transpeptidase, cysteinylglycinase, gamma-glutamyl cyclotransferease, and 5-oxoprolinase []. This family includes N-methylhydantoinase B which converts hydantoin to N-carbamyl-amino acids, and 5-oxoprolinase 3.5.2.9 from EC which catalyses the formation of L-glutamate from 5-oxo-L-proline. These enzymes are part of the oxoprolinase family and are related to hydantoinase_A.; GO: 0003824 catalytic activity
Probab=60.30 E-value=7.5 Score=31.38 Aligned_cols=51 Identities=20% Similarity=0.290 Sum_probs=31.2
Q ss_pred ECCEEEEeccC-----CccCCCHHHHHHHHHcccccCCCCEEEcCCCCCcccccCCCcc
Q psy538 43 VNGELRQKSTT-----GDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 43 vNG~~~q~~~t-----~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g~~~~~~g~~~ 96 (97)
-+|+.+..+.. ..|-+.+..++++.. -.|+||||+++--|-.-+ .+..|..
T Consensus 46 ~~G~~va~~~~ip~h~~~~~~~v~~~~~~~~--~~i~~GDv~i~NDPy~Gg-~H~~Dv~ 101 (527)
T PF02538_consen 46 ADGRLVAQSEGIPVHVGSMPFAVKAILEYFE--DGIRPGDVFITNDPYIGG-THLPDVT 101 (527)
T ss_pred CCCCeEEcCCCCcEEEechHHHHHHHHHhcc--CCCCCCCEEEEcCcccCC-ccCCccE
Confidence 47777765542 233344455555322 299999999998886533 4666643
No 30
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=58.83 E-value=4.9 Score=28.18 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=23.9
Q ss_pred hhhhcCCCcccccCCCCCcccCCcccCC
Q psy538 2 HAREHGLPWTVGKGFDTACPVSDFIPEH 29 (97)
Q Consensus 2 ~~~~~~~~w~~aK~~d~~~~lGp~v~~~ 29 (97)
++.+.+.||...|--++..-+||++.+.
T Consensus 158 ~~l~~~~~~l~v~~~~~~~~~gp~~~p~ 185 (193)
T TIGR03882 158 RALAAGRPWLLVKPGGVQPWIGPLFKPG 185 (193)
T ss_pred HHHHcCCceEEEEeCCceEEECCeecCC
Confidence 4677899999999999999999987443
No 31
>KOG3276|consensus
Probab=57.74 E-value=6.5 Score=26.05 Aligned_cols=20 Identities=30% Similarity=0.600 Sum_probs=17.6
Q ss_pred HHHHHHHHcccccCCCCEEE
Q psy538 61 GDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 61 ~~li~~lS~~~tL~pGDvI~ 80 (97)
+||++|+|+...|+.-|+.+
T Consensus 73 aeLl~ylskvLgLRksdv~l 92 (125)
T KOG3276|consen 73 AELLEYLSKVLGLRKSDVTL 92 (125)
T ss_pred HHHHHHHHHHhhhhhhheee
Confidence 69999999999999888765
No 32
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.72 E-value=21 Score=27.02 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=43.9
Q ss_pred ccccCCCCCcccCCcccCCCCC-CCCceeEEEEECCEEEEecc----CCccCCCHHHHHHHHHcc-cccCCCCEE
Q psy538 11 TVGKGFDTACPVSDFIPEHEIK-DPDDVPLWLKVNGELRQKST----TGDMLFKTGDLISYISQH-MTLEPYDLI 79 (97)
Q Consensus 11 ~~aK~~d~~~~lGp~v~~~~~~-d~~~~~i~~~vNG~~~q~~~----t~~m~~~~~~li~~lS~~-~tL~pGDvI 79 (97)
+.|-|-=..|++||-+-.-+++ +... .-++..+|++..+-. -++|-++++.|=.+.-++ +-.+||||=
T Consensus 209 ~LAHSKLR~as~GPEl~vG~lP~~vrG-~SRI~Rdg~viwek~FlSGE~nMsHs~aNLEhhHFkY~lfrrpGDvH 282 (333)
T COG3802 209 YLAHSKLRNASFGPELLVGALPEDVRG-VSRILRDGEVIWEKPFLSGEANMSHSIANLEHHHFKYALFRRPGDVH 282 (333)
T ss_pred EeehhhhhccccCcceeeccCchhhcC-ceeeecCCEEEEecccccCccchhhhhhhhhhhhhhhhhhcCCCceE
Confidence 4455555689999965222332 1222 235556888765432 378999999988877764 677899973
No 33
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=50.02 E-value=18 Score=28.00 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=27.1
Q ss_pred eeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcC
Q psy538 37 VPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTG 82 (97)
Q Consensus 37 ~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tG 82 (97)
..+++..+|+.. ..+..+|+.+-+....|+|||+|.--
T Consensus 198 ~~V~l~R~~~~~--------~i~l~dL~~~~~~ni~L~~GDvI~V~ 235 (355)
T PRK15175 198 MEVHVTRQQHYF--------TARLSDIYQYPGLDIALQPDDRITLR 235 (355)
T ss_pred cEEEEEECCEEE--------EEEHHHHhhCCcCCcEeCCCCEEEEc
Confidence 456777776542 33466777777788999999999764
No 34
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins. It displays specificity for phosphothreonine-containing epitopes but will also recognise phosphotyrosine with relatively high affinity. It spans approximately 80-100 amino acid residues folded into an 11-stranded beta sandwich, which sometimes contain small helical insertions between the loops connecting the strands []. To date, genes encoding FHA-containing proteins have been identified in eubacterial and eukaryotic but not archaeal genomes. The domain is present in a diverse range of proteins, such as kinases, phosphatases, kinesins, transcription factors, RNA-binding proteins and metabolic enzymes which partake in many different cellular processes - DNA repair, signal transduction, vesicular transport and protein degradation are just a few examples.; GO: 0005515 protein binding; PDB: 1LGQ_B 1LGP_A 2CSW_A 2PIE_A 3FM8_A 3MDB_B 3GQS_B 1UHT_A 1WLN_A 3POA_A ....
Probab=49.52 E-value=14 Score=20.67 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=9.9
Q ss_pred HcccccCCCCEEEcC
Q psy538 68 SQHMTLEPYDLILTG 82 (97)
Q Consensus 68 S~~~tL~pGDvI~tG 82 (97)
.+...|..||+|--|
T Consensus 54 ~~~~~L~~gd~i~~G 68 (68)
T PF00498_consen 54 GEPVPLKDGDIIRFG 68 (68)
T ss_dssp TSEEEE-TTEEEEET
T ss_pred CCEEECCCCCEEEcC
Confidence 346788888888654
No 35
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=46.63 E-value=12 Score=23.25 Aligned_cols=19 Identities=32% Similarity=0.198 Sum_probs=15.6
Q ss_pred cccccCCCCEEEcCCCCCc
Q psy538 69 QHMTLEPYDLILTGKAGFI 87 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp~g~ 87 (97)
+.-+|+.||.|.+|+-.|-
T Consensus 23 ~~GtL~~Gd~iv~G~~~Gk 41 (95)
T cd03701 23 QNGTLKKGDVIVAGGTYGK 41 (95)
T ss_pred EcCeEecCCEEEECCccce
Confidence 4568999999999997654
No 36
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=44.95 E-value=56 Score=18.41 Aligned_cols=14 Identities=29% Similarity=0.069 Sum_probs=8.1
Q ss_pred cccCCCCEEEcCCC
Q psy538 71 MTLEPYDLILTGKA 84 (97)
Q Consensus 71 ~tL~pGDvI~tGTp 84 (97)
..|+.||-|.-=+|
T Consensus 48 ~~L~~gD~V~ii~~ 61 (65)
T cd00565 48 TPLQDGDRIEIVTA 61 (65)
T ss_pred eecCCCCEEEEEEe
Confidence 45677776654333
No 37
>PRK15450 signal transduction protein PmrD; Provisional
Probab=44.54 E-value=17 Score=22.59 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=17.4
Q ss_pred HHHHHHHHHcccccCCCCEEE
Q psy538 60 TGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 60 ~~~li~~lS~~~tL~pGDvI~ 80 (97)
.-++|+.+-....|.+||++.
T Consensus 27 aLkMIAEv~s~~~l~~gDlLs 47 (85)
T PRK15450 27 ALKMIAEVKSDFALKVGDLLS 47 (85)
T ss_pred hHHHHHHHhhccccCcccccc
Confidence 457888887799999999984
No 38
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=44.01 E-value=38 Score=19.34 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=17.9
Q ss_pred EEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 39 LWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 39 i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
|++++||+.++-... -++.++++.+.
T Consensus 1 m~i~vNG~~~~~~~~----~tl~~ll~~l~ 26 (65)
T PRK05863 1 MIVVVNEEQVEVDEQ----TTVAALLDSLG 26 (65)
T ss_pred CEEEECCEEEEcCCC----CcHHHHHHHcC
Confidence 468899998875431 35777777654
No 39
>smart00537 DCX Domain in the Doublecortin (DCX) gene product. Tandemly-repeated domain in doublin, the Doublecortin gene product. Proposed to bind tubulin. Doublecortin (DCX) is mutated in human X-linked neuronal migration defects.
Probab=43.88 E-value=34 Score=20.95 Aligned_cols=52 Identities=10% Similarity=-0.024 Sum_probs=35.5
Q ss_pred CceeEEEEECCEEEEecc----CCccCCCHHHHHHHHHcccccCCC-CEEEcCCCCC
Q psy538 35 DDVPLWLKVNGELRQKST----TGDMLFKTGDLISYISQHMTLEPY-DLILTGKAGF 86 (97)
Q Consensus 35 ~~~~i~~~vNG~~~q~~~----t~~m~~~~~~li~~lS~~~tL~pG-DvI~tGTp~g 86 (97)
....|.++.||+....|. ......+++.+++.+++...|..| -|=---|+.|
T Consensus 4 k~k~i~~~rNGD~~~~g~~~~v~~~~~~s~d~lL~~lt~~v~l~~~~~Vr~lyt~~G 60 (89)
T smart00537 4 KPKRIRFYRNGDRFFKGVRLVVNRKRFKSFEALLQDLTEVVKLDLPHGVRKLYTLDG 60 (89)
T ss_pred cceEEEEEeCCCCCCCCEEEEEChhhcCCHHHHHHHHhhhcccCCCCCeeEEEcCCC
Confidence 445788999999866654 245788999999999994444433 2444445554
No 40
>COG0146 HyuB N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.19 E-value=18 Score=29.82 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=31.9
Q ss_pred CCEEEEecc-----CCccCCCHHHHHHHHHcccccCCCCEEEcCCCCC
Q psy538 44 NGELRQKST-----TGDMLFKTGDLISYISQHMTLEPYDLILTGKAGF 86 (97)
Q Consensus 44 NG~~~q~~~-----t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g 86 (97)
+|+.+.++. ..-|-+++..+|.+.-+...|+||||+++=-|--
T Consensus 48 ~G~lVA~a~hipVHlGsM~~~vk~~i~~~~~~~~l~pGDV~~~NdPy~ 95 (563)
T COG0146 48 EGNLVAQAPHIPVHLGSMSVSVKAMIRNNKENPDLEPGDVFITNDPYI 95 (563)
T ss_pred CCCeeccCCCCeEEecccHHHHHHHHHhhccCCCCCCCCEEEecCccc
Confidence 566665543 3567777777777776667999999999988753
No 41
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=41.65 E-value=18 Score=23.49 Aligned_cols=18 Identities=22% Similarity=-0.040 Sum_probs=15.4
Q ss_pred cccccCCCCEEEcCCCCC
Q psy538 69 QHMTLEPYDLILTGKAGF 86 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp~g 86 (97)
+.-+|+.||.|..|+..|
T Consensus 23 ~~GtL~~GD~Iv~g~~~G 40 (110)
T cd03703 23 YDGTLREGDTIVVCGLNG 40 (110)
T ss_pred ECCeEecCCEEEEccCCC
Confidence 356899999999999877
No 42
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=41.52 E-value=60 Score=18.26 Aligned_cols=14 Identities=21% Similarity=-0.066 Sum_probs=8.0
Q ss_pred cccCCCCEEEcCCC
Q psy538 71 MTLEPYDLILTGKA 84 (97)
Q Consensus 71 ~tL~pGDvI~tGTp 84 (97)
..|+.||.|.-=+|
T Consensus 47 ~~L~~gD~veii~~ 60 (64)
T TIGR01683 47 TILKEGDRIEIVTF 60 (64)
T ss_pred eecCCCCEEEEEEe
Confidence 45677776654443
No 43
>PF02938 GAD: GAD domain; InterPro: IPR004115 This entry represetns an 2 layer alpha/beta insertion domain found in some glutamyl-tRNA amidotransferases and aspartyl tRNA synthetases [, ]. The function of this domain is not yet known.; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0005737 cytoplasm; PDB: 1ZQ1_D 1EQR_B 1IL2_B 1C0A_A 1L0W_A 1G51_B 1EFW_B 2D6F_D.
Probab=41.15 E-value=22 Score=21.86 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=26.1
Q ss_pred EEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcC
Q psy538 39 LWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTG 82 (97)
Q Consensus 39 i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tG 82 (97)
..+.+++...+ ++.+.. =-++.+..+-+.+.+++||+|+-.
T Consensus 44 ~~ikv~~~~~~-s~i~kf--l~e~~~~~l~~~~~a~~GD~ll~~ 84 (95)
T PF02938_consen 44 AWIKVEEGELK-SPIAKF--LSEEELKALIERLGAKPGDLLLFV 84 (95)
T ss_dssp CCEEESTCEEE-CTTCCC--CHHHHHHHHHHHTT--TTEEEEEE
T ss_pred eeeeEcCCccc-Cccccc--CCHHHHHHHHHHhCCCCCCEEEEE
Confidence 34566664443 444444 236788888999999999998754
No 44
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=40.81 E-value=56 Score=17.12 Aligned_cols=38 Identities=26% Similarity=0.304 Sum_probs=27.0
Q ss_pred eEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEE
Q psy538 38 PLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 38 ~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~ 80 (97)
.+++.+||+.+.-.++ --++.++|.. ....|.+.|.|.
T Consensus 1 ~Vtv~~dG~~~~v~T~---a~tV~~~L~~--~gI~l~~~D~v~ 38 (43)
T PF03990_consen 1 PVTVTVDGKEKTVYTT---ASTVGDALKE--LGITLGEEDKVS 38 (43)
T ss_pred CEEEEECCEEEEEEeC---CCCHHHHHHh--CCCCCCCCCEEe
Confidence 3678899998854443 3567777764 467888999885
No 45
>PF11064 DUF2865: Protein of unknown function (DUF2865); InterPro: IPR021293 This bacterial family of proteins has no known function.
Probab=40.44 E-value=13 Score=24.28 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=14.6
Q ss_pred HHHHHHHcccccCCCCEEEc
Q psy538 62 DLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 62 ~li~~lS~~~tL~pGDvI~t 81 (97)
.....+....+|++||||.|
T Consensus 94 ~~~~~~~~~~t~~~GDivvt 113 (116)
T PF11064_consen 94 MALAPADSDPTLRKGDIVVT 113 (116)
T ss_pred hhccccccccccccCCEecC
Confidence 33444556789999999986
No 46
>PRK11479 hypothetical protein; Provisional
Probab=38.18 E-value=20 Score=26.88 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=21.3
Q ss_pred EECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCC
Q psy538 42 KVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKA 84 (97)
Q Consensus 42 ~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp 84 (97)
+-||...++.+.++- +-...++ ...|+|||||++.|.
T Consensus 40 ~~~~~~~pr~s~~q~-----~~g~~Vs-~~~LqpGDLVFfst~ 76 (274)
T PRK11479 40 KTWAVKFQHQSSFTE-----QGIKEIT-APDLKPGDLLFSSSL 76 (274)
T ss_pred hhcceecCcccHHHH-----hCCcccC-hhhCCCCCEEEEecC
Confidence 345555566655541 1112233 347999999998654
No 47
>PF15656 Tox-HDC: Toxin with a H, D/N and C signature
Probab=36.48 E-value=60 Score=21.45 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHcccccCCCCE-EEcCCCCCcc
Q psy538 58 FKTGDLISYISQHMTLEPYDL-ILTGKAGFIL 88 (97)
Q Consensus 58 ~~~~~li~~lS~~~tL~pGDv-I~tGTp~g~~ 88 (97)
.++..-|+.+++......+|| |+|||-+...
T Consensus 12 ~~i~~pl~~Iar~~s~~~~~I~IlSGtHG~~~ 43 (119)
T PF15656_consen 12 YDINAPLETIARRPSGDNGDIHILSGTHGYCS 43 (119)
T ss_pred hhhHHHHHHHHhCcCCCCCCEEEEeCCCCCcc
Confidence 467888999999888888886 7899987654
No 48
>PLN02666 5-oxoprolinase
Probab=36.21 E-value=30 Score=31.28 Aligned_cols=50 Identities=16% Similarity=0.104 Sum_probs=31.4
Q ss_pred CCEEEEecc-----CCccCCCHHHHHHHHHcccccCCCCEEEcCCCCCcccccCCCcc
Q psy538 44 NGELRQKST-----TGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 44 NG~~~q~~~-----t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g~~~~~~g~~~ 96 (97)
+|+.+.++. ...|-+.+..++++.. -+|+||||+++--|-..+ .+.+|..
T Consensus 789 ~G~lva~~~~ip~hlgsm~~~v~~~l~~~~--~~l~pGDV~i~NDPy~Gg-tHl~Dv~ 843 (1275)
T PLN02666 789 DGGLVANAPHVPVHLGAMSSTVRWQLEYWG--ENLNEGDVLVTNHPQAGG-SHLPDIT 843 (1275)
T ss_pred CCCeeecCCCceEEeecCHHHHHHHHHhcc--CCCCCCCEEEEcCCcCCC-CcCCceE
Confidence 566655532 2345556666666543 379999999999886333 5666543
No 49
>PF14894 Lsm_C: Lsm C-terminal; PDB: 1M5Q_1.
Probab=34.52 E-value=37 Score=20.08 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=14.1
Q ss_pred HHHHHHHHHcccccCCCCEEE
Q psy538 60 TGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 60 ~~~li~~lS~~~tL~pGDvI~ 80 (97)
+.++-.++.+.+.|.||+|=.
T Consensus 1 ~~eFa~~~~r~l~l~p~~VK~ 21 (64)
T PF14894_consen 1 PREFAEYLERELNLFPGMVKV 21 (64)
T ss_dssp HHHHHHHHHH---HSTTTEEE
T ss_pred ChHHHHHHHHhcccCccceEE
Confidence 357778889999999999743
No 50
>PRK10030 hypothetical protein; Provisional
Probab=34.44 E-value=27 Score=24.66 Aligned_cols=16 Identities=13% Similarity=0.030 Sum_probs=12.5
Q ss_pred HcccccCCCCEEEcCC
Q psy538 68 SQHMTLEPYDLILTGK 83 (97)
Q Consensus 68 S~~~tL~pGDvI~tGT 83 (97)
.--..|++||||+.-.
T Consensus 16 ~~~~~l~~GDlif~~g 31 (197)
T PRK10030 16 AFAWQPQTGDIIFQIS 31 (197)
T ss_pred hhhcCCCCCCEEEEeC
Confidence 3456999999999854
No 51
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=34.27 E-value=25 Score=21.97 Aligned_cols=18 Identities=28% Similarity=0.226 Sum_probs=14.8
Q ss_pred cccccCCCCEEEcCCCCC
Q psy538 69 QHMTLEPYDLILTGKAGF 86 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp~g 86 (97)
+.-+|+.||.|..|+-.|
T Consensus 23 ~~GtL~~Gd~iv~G~~~g 40 (95)
T cd03702 23 QNGTLKVGDVLVAGTTYG 40 (95)
T ss_pred EcCeEeCCCEEEEccccc
Confidence 456899999999998655
No 52
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=33.45 E-value=41 Score=25.56 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHc-ccccCCCCEEEcCC
Q psy538 58 FKTGDLISYISQ-HMTLEPYDLILTGK 83 (97)
Q Consensus 58 ~~~~~li~~lS~-~~tL~pGDvI~tGT 83 (97)
++|.+...|+++ ...++|||-++.|+
T Consensus 167 ~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 167 LTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred CChHHHHHHHHHHHhcCCCcceEEEec
Confidence 689999999998 68999999999997
No 53
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=33.32 E-value=23 Score=21.70 Aligned_cols=15 Identities=33% Similarity=0.350 Sum_probs=12.0
Q ss_pred cccccCCCCEEEcCC
Q psy538 69 QHMTLEPYDLILTGK 83 (97)
Q Consensus 69 ~~~tL~pGDvI~tGT 83 (97)
....++|||||+...
T Consensus 48 ~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 48 PISELQPGDLIFFKG 62 (105)
T ss_dssp EGGG-TTTEEEEEEG
T ss_pred chhcCCcccEEEEeC
Confidence 467899999999887
No 54
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=33.07 E-value=18 Score=21.09 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=11.1
Q ss_pred HcccccCCCCEEEcCCC
Q psy538 68 SQHMTLEPYDLILTGKA 84 (97)
Q Consensus 68 S~~~tL~pGDvI~tGTp 84 (97)
++...|++||+|-...+
T Consensus 24 ~el~~L~~Gdvi~l~~~ 40 (77)
T PF01052_consen 24 GELLNLKVGDVIPLDKP 40 (77)
T ss_dssp HHHHC--TT-EEEECCE
T ss_pred HHHhcCCCCCEEEeCCC
Confidence 34568999999999887
No 55
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=32.49 E-value=45 Score=20.33 Aligned_cols=22 Identities=14% Similarity=0.150 Sum_probs=13.4
Q ss_pred cccCCCCEEEcCCCCCcccccC
Q psy538 71 MTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 71 ~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
+.-.|+++..+|=|.|+..-+|
T Consensus 30 ~~~~p~~v~V~GLPegi~fr~P 51 (76)
T PF02946_consen 30 FQRDPEAVYVQGLPEGIPFRRP 51 (76)
T ss_dssp HHHTTTTEEEES--TT--SS-T
T ss_pred HhhCCCcEEEEeCCCCCcCCCC
Confidence 4557999999999999974443
No 56
>COG3862 Uncharacterized protein with conserved CXXC pairs [Function unknown]
Probab=32.00 E-value=49 Score=21.63 Aligned_cols=62 Identities=24% Similarity=0.316 Sum_probs=37.4
Q ss_pred CcccCCcccCCCCCCCCce-eEEEEE-CCEE-EEeccCCccC--CCHHHHHHHHHc---ccccCCCCEEE
Q psy538 19 ACPVSDFIPEHEIKDPDDV-PLWLKV-NGEL-RQKSTTGDML--FKTGDLISYISQ---HMTLEPYDLIL 80 (97)
Q Consensus 19 ~~~lGp~v~~~~~~d~~~~-~i~~~v-NG~~-~q~~~t~~m~--~~~~~li~~lS~---~~tL~pGDvI~ 80 (97)
.||-|--.-.+|+-+|..+ .-.++| ||+. +..--|..-| --+.++..+||+ ..++..||+|+
T Consensus 29 ~CPRG~ey~~~Ei~~pkrvvts~VrV~ng~~~~vpVKT~kPIpKel~~elmk~l~~l~v~aPVK~GDvV~ 98 (117)
T COG3862 29 RCPRGVEYGKEEITSPKRVVTSTVRVKNGELPVVPVKTEKPIPKELIPELMKELSRLKVGAPVKIGDVVI 98 (117)
T ss_pred cCCchhhhhHhhhcCcceEEEEEEEEcCCccceeecccCCCCCHHHhHHHHHHHHhheecCCeeeccEEe
Confidence 6777765545677666543 222333 7764 3333344433 224567777776 68999999998
No 57
>PRK06033 hypothetical protein; Validated
Probab=31.25 E-value=41 Score=20.52 Aligned_cols=17 Identities=12% Similarity=0.049 Sum_probs=13.6
Q ss_pred HcccccCCCCEEEcCCC
Q psy538 68 SQHMTLEPYDLILTGKA 84 (97)
Q Consensus 68 S~~~tL~pGDvI~tGTp 84 (97)
.+...|++||+|-...+
T Consensus 23 ~dlL~L~~GDVI~L~~~ 39 (83)
T PRK06033 23 HQVLRMGRGAVIPLDAT 39 (83)
T ss_pred HHHhCCCCCCEEEeCCC
Confidence 34568999999998875
No 58
>PF15092 UPF0728: Uncharacterised protein family UPF0728
Probab=31.13 E-value=62 Score=20.30 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.4
Q ss_pred eEEEEECCEEEEeccCCccCCC
Q psy538 38 PLWLKVNGELRQKSTTGDMLFK 59 (97)
Q Consensus 38 ~i~~~vNG~~~q~~~t~~m~~~ 59 (97)
.+++.+||+.+.+.+..++-|.
T Consensus 51 ~vel~vnge~VF~CnI~~L~Fg 72 (88)
T PF15092_consen 51 VVELVVNGEIVFQCNITDLEFG 72 (88)
T ss_pred EEEEEECCeEEEEeCCceeecC
Confidence 4788899999999998877664
No 59
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=30.78 E-value=26 Score=21.15 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=8.2
Q ss_pred HcccccCCCCEE
Q psy538 68 SQHMTLEPYDLI 79 (97)
Q Consensus 68 S~~~tL~pGDvI 79 (97)
+++..+++||||
T Consensus 44 ~r~~g~k~GdVv 55 (74)
T PF01191_consen 44 ARYLGAKPGDVV 55 (74)
T ss_dssp HHHTT--TTSEE
T ss_pred hhhcCCCCCCEE
Confidence 467799999998
No 60
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=30.77 E-value=2.1e+02 Score=20.76 Aligned_cols=46 Identities=33% Similarity=0.341 Sum_probs=25.5
Q ss_pred CCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCCCccccc
Q psy538 34 PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAGFILMFQ 91 (97)
Q Consensus 34 ~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g~~~~~ 91 (97)
+....|+++|||+.+.-.. +--. .|+.+|-+.. -+|||..|.+.-.
T Consensus 47 ~~~~~i~~~VNG~~~~~~v--~~~~---tLLd~LR~~l-------~ltGtK~GC~~G~ 92 (217)
T PRK11433 47 PEISPVTLKVNGKTEQLEV--DTRT---TLLDALREHL-------HLTGTKKGCDHGQ 92 (217)
T ss_pred CcCceEEEEECCEEEEEec--CCCC---cHHHHHHHhc-------CCCCCCCCCCCCC
Confidence 3456789999998864321 1112 3455555422 2677776655433
No 61
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=29.98 E-value=97 Score=24.04 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=27.3
Q ss_pred eeEEEEECCEEEEeccCCccCCCHHHHHHH--HHcccccCCCCEEEcCC
Q psy538 37 VPLWLKVNGELRQKSTTGDMLFKTGDLISY--ISQHMTLEPYDLILTGK 83 (97)
Q Consensus 37 ~~i~~~vNG~~~q~~~t~~m~~~~~~li~~--lS~~~tL~pGDvI~tGT 83 (97)
-.+.+..||+.. ..++.+++.. +++...|+|||+|.--.
T Consensus 211 ~~V~l~R~g~~~--------~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~ 251 (379)
T PRK15078 211 RNVVLTHNGKEE--------RISLQALMQNGDLSQNRLLYPGDILYVPR 251 (379)
T ss_pred ceEEEEECCeEE--------EEEHHHHHhcCCcccCceeCCCCEEEECC
Confidence 357777787643 3466677653 35678899999998754
No 62
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=29.78 E-value=29 Score=22.73 Aligned_cols=13 Identities=15% Similarity=0.159 Sum_probs=10.5
Q ss_pred cccCCCCEEEcCC
Q psy538 71 MTLEPYDLILTGK 83 (97)
Q Consensus 71 ~tL~pGDvI~tGT 83 (97)
-.|+|||||+..+
T Consensus 75 ~~~qpGDlvff~~ 87 (134)
T TIGR02219 75 DAAQPGDVLVFRW 87 (134)
T ss_pred hcCCCCCEEEEee
Confidence 3689999999753
No 63
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=29.20 E-value=28 Score=19.95 Aligned_cols=16 Identities=13% Similarity=0.221 Sum_probs=9.8
Q ss_pred HHcccccCCCCEEEcC
Q psy538 67 ISQHMTLEPYDLILTG 82 (97)
Q Consensus 67 lS~~~tL~pGDvI~tG 82 (97)
|.+...|+.||++.+-
T Consensus 45 L~r~~~L~~GDvL~~d 60 (65)
T PF02814_consen 45 LPRGTVLRDGDVLYLD 60 (65)
T ss_dssp -SSTTT--TTEEEEEC
T ss_pred CCCCcccCCCCEEEeC
Confidence 3466779999999764
No 64
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=29.05 E-value=33 Score=21.06 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=10.5
Q ss_pred HcccccCCCCEEE
Q psy538 68 SQHMTLEPYDLIL 80 (97)
Q Consensus 68 S~~~tL~pGDvI~ 80 (97)
+++..+++||||=
T Consensus 47 ~r~~g~k~GdVvk 59 (79)
T PRK09570 47 VKAIGAKPGDVIK 59 (79)
T ss_pred hhhcCCCCCCEEE
Confidence 3577999999984
No 65
>PF05423 Mycobact_memb: Mycobacterium membrane protein; InterPro: IPR008693 This family contains several membrane proteins from Mycobacterium species [].
Probab=28.65 E-value=94 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=15.7
Q ss_pred CCceeEEEEECCEEEEeccC
Q psy538 34 PDDVPLWLKVNGELRQKSTT 53 (97)
Q Consensus 34 ~~~~~i~~~vNG~~~q~~~t 53 (97)
-..+..++.|||+++.+-+.
T Consensus 107 ~~~v~CrItVdG~v~~E~t~ 126 (140)
T PF05423_consen 107 GDSVTCRITVDGKVKDEQTA 126 (140)
T ss_pred CCeEEEEEEECCEEEEEEec
Confidence 35689999999999876543
No 66
>KOG1939|consensus
Probab=27.52 E-value=76 Score=28.00 Aligned_cols=45 Identities=18% Similarity=0.140 Sum_probs=32.9
Q ss_pred CCEEEEecc-CCccCCCHHHHHHHHHc--ccccCCCCEEEcCCCCCcc
Q psy538 44 NGELRQKST-TGDMLFKTGDLISYISQ--HMTLEPYDLILTGKAGFIL 88 (97)
Q Consensus 44 NG~~~q~~~-t~~m~~~~~~li~~lS~--~~tL~pGDvI~tGTp~g~~ 88 (97)
+|-++..+. .--++.+....|.|..+ .-.|.||||++|-.|..-+
T Consensus 771 dGgLVANAPHvPvhLGsMqt~V~~Q~k~~~~kLk~GDVlltNHP~aGG 818 (1247)
T KOG1939|consen 771 DGGLVANAPHVPVHLGSMQTTVKWQLKHWGEKLKPGDVLLTNHPSAGG 818 (1247)
T ss_pred CCCeeccCCCCceeecchHHHHHHHHHHhccCCCCCcEEEecCCCCCC
Confidence 455555543 34567777888888775 5899999999999986543
No 67
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.48 E-value=40 Score=26.14 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=11.9
Q ss_pred ccccCCCC-EEEcCCCC
Q psy538 70 HMTLEPYD-LILTGKAG 85 (97)
Q Consensus 70 ~~tL~pGD-vI~tGTp~ 85 (97)
...++||| ||+||||+
T Consensus 158 ~~~~~~GD~vI~tg~~g 174 (339)
T COG0309 158 PSGARPGDAVIVTGTIG 174 (339)
T ss_pred cCCCCCCCEEEEcCChh
Confidence 45688998 46788875
No 68
>PF13550 Phage-tail_3: Putative phage tail protein
Probab=27.09 E-value=34 Score=22.21 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=12.3
Q ss_pred ccccCCCCEEEcCCC
Q psy538 70 HMTLEPYDLILTGKA 84 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp 84 (97)
++.|+|||+|.--.+
T Consensus 137 ~~~l~pGDvi~l~~~ 151 (164)
T PF13550_consen 137 GLALEPGDVIALSDD 151 (164)
T ss_pred hccCCCCCEEEEEeC
Confidence 788999999976555
No 69
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=26.76 E-value=1.1e+02 Score=20.55 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=23.9
Q ss_pred CHHHHHHHHHcc------cccCCCCEEEcCCCCCccccc
Q psy538 59 KTGDLISYISQH------MTLEPYDLILTGKAGFILMFQ 91 (97)
Q Consensus 59 ~~~~li~~lS~~------~tL~pGDvI~tGTp~g~~~~~ 91 (97)
+++++-.|+-+. -.+++||||.+|---|+|--|
T Consensus 23 ~~e~la~~~~e~~dp~f~~~v~~gdilVaG~nFG~GSSR 61 (129)
T cd01674 23 TPEKMAEVCMENYDSEFSTKTKQGDILVSGFNFGTGSSR 61 (129)
T ss_pred CHHHHHHhhcccCCchhhhcCCCCCEEEeCCccCCCCcH
Confidence 566776666543 458899999999887776533
No 70
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=26.49 E-value=49 Score=22.43 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=12.9
Q ss_pred cccCCCCEEEcCCCC
Q psy538 71 MTLEPYDLILTGKAG 85 (97)
Q Consensus 71 ~tL~pGDvI~tGTp~ 85 (97)
..++.|||++.|..+
T Consensus 74 ~~~q~GDI~I~g~~g 88 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRG 88 (145)
T ss_pred ccccCCCEEEEcCCC
Confidence 479999999998874
No 71
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=26.43 E-value=49 Score=22.28 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=16.2
Q ss_pred ccCCCHHHHHHHHHcccccCCCCEEE
Q psy538 55 DMLFKTGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 55 ~m~~~~~~li~~lS~~~tL~pGDvI~ 80 (97)
.-.-.|.+|++++-+..+ .+||+|+
T Consensus 172 h~~~kP~~l~~~lI~~~t-~~gdiVl 196 (231)
T PF01555_consen 172 HPTQKPVELIERLIKAST-NPGDIVL 196 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS--TT-EEE
T ss_pred eeecCCHHHHHHHHHhhh-ccceeee
Confidence 345678899999987665 7799997
No 72
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=26.19 E-value=41 Score=19.32 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=8.6
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 24 gL~~GD~I~~ 33 (79)
T cd00986 24 KLKAGDHIIA 33 (79)
T ss_pred CCCCCCEEEE
Confidence 4999999975
No 73
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=25.75 E-value=55 Score=24.91 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHccc--ccCCCCEEEcCC
Q psy538 58 FKTGDLISYISQHM--TLEPYDLILTGK 83 (97)
Q Consensus 58 ~~~~~li~~lS~~~--tL~pGDvI~tGT 83 (97)
|++++.+++|.+.. .|.|||.++-|.
T Consensus 170 f~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 170 FSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 68899999999875 589999999986
No 74
>PLN02584 5'-methylthioadenosine nucleosidase
Probab=25.40 E-value=2.2e+02 Score=20.62 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=20.5
Q ss_pred cccCCCCEEEcCCCCCccc--ccCCCccC
Q psy538 71 MTLEPYDLILTGKAGFILM--FQQSPHSV 97 (97)
Q Consensus 71 ~tL~pGDvI~tGTp~g~~~--~~~g~~~~ 97 (97)
..+.|.-||.+||-++..+ ++.||.++
T Consensus 86 ~~~~~~~II~~G~aG~l~~~~l~vGDvVi 114 (249)
T PLN02584 86 QALKPDLIINAGTAGGFKAKGAAIGDVFL 114 (249)
T ss_pred HhcCCCEEEEEecccCcCcCCCCcCCEEE
Confidence 4466888999999988753 78888653
No 75
>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease. Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.
Probab=25.27 E-value=45 Score=19.80 Aligned_cols=9 Identities=56% Similarity=0.700 Sum_probs=4.6
Q ss_pred ccCCCCEEE
Q psy538 72 TLEPYDLIL 80 (97)
Q Consensus 72 tL~pGDvI~ 80 (97)
+|++||+|+
T Consensus 11 ~l~~GD~vl 19 (90)
T TIGR02754 11 TLPPGDRII 19 (90)
T ss_pred ccCCCCEEE
Confidence 345555555
No 76
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).
Probab=25.13 E-value=72 Score=18.61 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=12.1
Q ss_pred cccccCCCCEEEcCC
Q psy538 69 QHMTLEPYDLILTGK 83 (97)
Q Consensus 69 ~~~tL~pGDvI~tGT 83 (97)
....|..||+|..|.
T Consensus 79 ~~~~l~~gd~i~ig~ 93 (102)
T cd00060 79 EPVRLRDGDVIRLGN 93 (102)
T ss_pred CcEECCCCCEEEECC
Confidence 467799999998885
No 77
>PF04571 Lipin_N: lipin, N-terminal conserved region; InterPro: IPR007651 Mutations in the lipin gene lead to fatty liver dystrophy in mice. The protein has been shown to be phosphorylated by the TOR Ser/Thr protein kinases in response to insulin stimulation. This entry represents a conserved domain found at the N terminus of the member proteins [, ].
Probab=24.82 E-value=1.1e+02 Score=19.94 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=22.9
Q ss_pred cCCCCCcccCCc-ccCC--CCCCCCceeEEEEECCEEE
Q psy538 14 KGFDTACPVSDF-IPEH--EIKDPDDVPLWLKVNGELR 48 (97)
Q Consensus 14 K~~d~~~~lGp~-v~~~--~~~d~~~~~i~~~vNG~~~ 48 (97)
|--|++.-.+|| |..- .+-.+.+-.+.+.|||+.+
T Consensus 34 ~q~DGs~~sSPFhVRFGk~~vl~~~ek~V~I~VNG~~~ 71 (110)
T PF04571_consen 34 EQPDGSLKSSPFHVRFGKLGVLRPREKVVDIEVNGKPV 71 (110)
T ss_pred ecCCCCEecCccEEEEcceeeecccCcEEEEEECCEEc
Confidence 445778888888 4321 2224556678899999875
No 78
>PRK11524 putative methyltransferase; Provisional
Probab=24.71 E-value=67 Score=23.51 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.0
Q ss_pred CccCCCHHHHHHHHHcccccCCCCEEE
Q psy538 54 GDMLFKTGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 54 ~~m~~~~~~li~~lS~~~tL~pGDvI~ 80 (97)
.+-.-.|.+|++.+-+..+ .+||+|+
T Consensus 188 ~HPt~kP~~L~erlI~~~S-~~GD~VL 213 (284)
T PRK11524 188 NHPTQKPEALLKRIILASS-NPGDIVL 213 (284)
T ss_pred cCcccChHHHHHHHHHHhC-CCCCEEE
Confidence 3555678899999887777 8999997
No 79
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=24.69 E-value=47 Score=19.28 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=10.0
Q ss_pred cccccCCCCEEEc
Q psy538 69 QHMTLEPYDLILT 81 (97)
Q Consensus 69 ~~~tL~pGDvI~t 81 (97)
....|++||+|+.
T Consensus 24 ~~aGL~~GDiI~~ 36 (79)
T cd00991 24 ENAVLHTGDVIYS 36 (79)
T ss_pred HhcCCCCCCEEEE
Confidence 3457999999974
No 80
>PF03300 Tenui_NS4: Tenuivirus non-structural protein NS4; InterPro: IPR004980 This is a non-structural protein found in members of the Tenuivirus family.
Probab=24.64 E-value=45 Score=24.82 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=29.4
Q ss_pred cccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCC
Q psy538 12 VGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLF 58 (97)
Q Consensus 12 ~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~ 58 (97)
.+|+| +++|-+-..-..+|..++.+.+.|.+..||..-.++.+|
T Consensus 153 isK~F---AvlgSlpnfl~~eD~~nl~v~~~i~d~SV~ncVIsr~Lw 196 (283)
T PF03300_consen 153 ISKNF---AVLGSLPNFLSYEDKDNLQVEISIKDASVQNCVISRSLW 196 (283)
T ss_pred hhhhh---HHHhcCcccccccccccceEEEEEcCCcccceEeeeeeE
Confidence 45664 667765322233477889999999888888776665554
No 81
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=24.59 E-value=38 Score=19.74 Aligned_cols=12 Identities=42% Similarity=0.672 Sum_probs=8.4
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|+.
T Consensus 29 ~aGl~~GD~I~~ 40 (82)
T PF13180_consen 29 KAGLQPGDIILA 40 (82)
T ss_dssp HTTS-TTEEEEE
T ss_pred HCCCCCCcEEEE
Confidence 445999999974
No 82
>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification. ; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....
Probab=24.53 E-value=34 Score=19.04 Aligned_cols=8 Identities=25% Similarity=0.580 Sum_probs=3.7
Q ss_pred cCCCCEEE
Q psy538 73 LEPYDLIL 80 (97)
Q Consensus 73 L~pGDvI~ 80 (97)
+++||+|+
T Consensus 11 i~~Gd~v~ 18 (70)
T PF00717_consen 11 IKDGDIVL 18 (70)
T ss_dssp SSTTEEEE
T ss_pred eeCCCEEE
Confidence 44444444
No 83
>PRK11507 ribosome-associated protein; Provisional
Probab=24.51 E-value=49 Score=19.83 Aligned_cols=14 Identities=0% Similarity=-0.059 Sum_probs=10.9
Q ss_pred cccccCCCCEEEcC
Q psy538 69 QHMTLEPYDLILTG 82 (97)
Q Consensus 69 ~~~tL~pGDvI~tG 82 (97)
|...|++||+|--.
T Consensus 49 RgkKl~~GD~V~~~ 62 (70)
T PRK11507 49 KRCKIVAGQTVSFA 62 (70)
T ss_pred cCCCCCCCCEEEEC
Confidence 57789999998643
No 84
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=24.31 E-value=31 Score=18.71 Aligned_cols=14 Identities=14% Similarity=0.266 Sum_probs=9.7
Q ss_pred HcccccCCCCEEEc
Q psy538 68 SQHMTLEPYDLILT 81 (97)
Q Consensus 68 S~~~tL~pGDvI~t 81 (97)
..+..+..||+|++
T Consensus 19 ~~G~~VkkGd~L~~ 32 (50)
T PF13533_consen 19 KEGQQVKKGDVLLV 32 (50)
T ss_pred cCCCEEcCCCEEEE
Confidence 34667777887765
No 85
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.07 E-value=97 Score=16.20 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=12.4
Q ss_pred HHcccccCCCCEEEcCC
Q psy538 67 ISQHMTLEPYDLILTGK 83 (97)
Q Consensus 67 lS~~~tL~pGDvI~tGT 83 (97)
+..-..+.||.||.=|-
T Consensus 15 l~~a~~~~pG~ViING~ 31 (36)
T PF08194_consen 15 LAAAVPATPGNVIINGK 31 (36)
T ss_pred HHhcccCCCCeEEECce
Confidence 45566677999998764
No 86
>smart00560 LamGL LamG-like jellyroll fold domain.
Probab=23.04 E-value=67 Score=20.54 Aligned_cols=18 Identities=33% Similarity=0.143 Sum_probs=13.4
Q ss_pred CceeEEEEECCEEEEecc
Q psy538 35 DDVPLWLKVNGELRQKST 52 (97)
Q Consensus 35 ~~~~i~~~vNG~~~q~~~ 52 (97)
.+-.++++|||+.+.+..
T Consensus 73 ~~g~~~lYvnG~~~~~~~ 90 (133)
T smart00560 73 GAGKLSLYVNGVEVATSE 90 (133)
T ss_pred CCCeEEEEECCEEccccc
Confidence 345799999999876443
No 87
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=22.92 E-value=72 Score=18.81 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=12.6
Q ss_pred cccccCCCCEEEcCCC
Q psy538 69 QHMTLEPYDLILTGKA 84 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp 84 (97)
+...|++||+|-...+
T Consensus 25 ell~L~~Gdvi~L~~~ 40 (77)
T TIGR02480 25 DLLKLGEGSVIELDKL 40 (77)
T ss_pred HHhcCCCCCEEEcCCC
Confidence 3467999999998764
No 88
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=22.86 E-value=1.6e+02 Score=16.85 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=5.7
Q ss_pred ccccCCCCEEE
Q psy538 70 HMTLEPYDLIL 80 (97)
Q Consensus 70 ~~tL~pGDvI~ 80 (97)
...|++||-|-
T Consensus 52 ~~~l~~gD~Ve 62 (70)
T PRK08364 52 DDPVKDGDYVE 62 (70)
T ss_pred CcCcCCCCEEE
Confidence 34455666553
No 89
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=22.77 E-value=66 Score=22.72 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=10.6
Q ss_pred cccCCCCEEEcCC
Q psy538 71 MTLEPYDLILTGK 83 (97)
Q Consensus 71 ~tL~pGDvI~tGT 83 (97)
..|+|||+|+-.+
T Consensus 127 ~~lqpGDLVfF~~ 139 (190)
T PRK10838 127 SKLRTGDLVLFRA 139 (190)
T ss_pred CCCCCCcEEEECC
Confidence 5689999999754
No 90
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=22.60 E-value=55 Score=18.01 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 29 ~gl~~GD~I~~ 39 (70)
T cd00136 29 AGLQAGDVILA 39 (70)
T ss_pred cCCCCCCEEEE
Confidence 67999999974
No 91
>PF13403 Hint_2: Hint domain
Probab=22.21 E-value=54 Score=21.94 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=11.6
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|++||.|+|-.
T Consensus 18 Ve~L~~GD~V~T~d 31 (147)
T PF13403_consen 18 VEDLRPGDRVLTRD 31 (147)
T ss_pred eeccCCCCEEEecC
Confidence 46799999999964
No 92
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=22.14 E-value=54 Score=18.61 Aligned_cols=11 Identities=18% Similarity=0.114 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 28 aGl~~GD~I~~ 38 (80)
T cd00990 28 AGLVAGDELVA 38 (80)
T ss_pred hCCCCCCEEEE
Confidence 46999999974
No 93
>KOG2915|consensus
Probab=21.88 E-value=79 Score=24.22 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=17.5
Q ss_pred HHHHHcccccCCCCEEE-cCCCCC
Q psy538 64 ISYISQHMTLEPYDLIL-TGKAGF 86 (97)
Q Consensus 64 i~~lS~~~tL~pGDvI~-tGTp~g 86 (97)
|+++-..+.++||++|+ +||-+|
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSG 117 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSG 117 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcc
Confidence 56667788999999887 666544
No 94
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=21.73 E-value=55 Score=18.45 Aligned_cols=12 Identities=33% Similarity=0.318 Sum_probs=9.3
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|..
T Consensus 27 ~~gl~~GD~I~~ 38 (79)
T cd00989 27 KAGLKAGDRILA 38 (79)
T ss_pred HcCCCCCCEEEE
Confidence 346899999974
No 95
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=21.70 E-value=93 Score=18.67 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=15.4
Q ss_pred HHHHHHHHcccccCCCCEEE
Q psy538 61 GDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 61 ~~li~~lS~~~tL~pGDvI~ 80 (97)
.+|++|||+...++..+|-+
T Consensus 43 ~ali~~La~~l~v~ks~i~i 62 (77)
T PF02594_consen 43 KALIRFLAKALGVPKSDIEI 62 (77)
T ss_dssp HHHHHHHHHHCT--TTCEEE
T ss_pred HHHHHHHHHHhCCCcccEEE
Confidence 48999999999999988853
No 96
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=21.40 E-value=38 Score=23.39 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=9.9
Q ss_pred cccccCCCCEEEc
Q psy538 69 QHMTLEPYDLILT 81 (97)
Q Consensus 69 ~~~tL~pGDvI~t 81 (97)
..++|+|||+|+-
T Consensus 209 ~~~~l~pGD~Lfi 221 (251)
T PF13621_consen 209 YEVVLEPGDVLFI 221 (251)
T ss_dssp EEEEEETT-EEEE
T ss_pred eEEEECCCeEEEE
Confidence 4789999999974
No 97
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=21.06 E-value=51 Score=22.16 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=17.5
Q ss_pred cCCCHHHHHHH--HHcccccCCCCEEEc
Q psy538 56 MLFKTGDLISY--ISQHMTLEPYDLILT 81 (97)
Q Consensus 56 m~~~~~~li~~--lS~~~tL~pGDvI~t 81 (97)
...+..+++.. .++...|+|||+|.-
T Consensus 133 ~~idl~~l~~~g~~~~n~~L~~gD~I~V 160 (165)
T TIGR03027 133 ISVRLKDLIKDGDVTANVELKPGDVLII 160 (165)
T ss_pred EEEEHHHHhhcCCccCCceeCCCCEEEE
Confidence 34455555542 356788999999974
No 98
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=21.00 E-value=1.9e+02 Score=16.91 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=19.3
Q ss_pred eEEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 38 PLWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 38 ~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
.|++.+||+.+.-... -++++|++.+.
T Consensus 2 ~m~i~~ng~~~e~~~~----~tv~dLL~~l~ 28 (68)
T COG2104 2 PMTIQLNGKEVEIAEG----TTVADLLAQLG 28 (68)
T ss_pred cEEEEECCEEEEcCCC----CcHHHHHHHhC
Confidence 4778889888765543 46778887775
No 99
>PF11347 DUF3148: Protein of unknown function (DUF3148); InterPro: IPR021495 This family of proteins has no known function.
Probab=20.94 E-value=47 Score=19.57 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=18.6
Q ss_pred cccCCCCEEEcCCCCCcccccCCCc
Q psy538 71 MTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 71 ~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
--|+|-|+|-.|-.+-+...+|++.
T Consensus 22 PmLRp~dlv~~ge~G~i~~rrp~~~ 46 (63)
T PF11347_consen 22 PMLRPPDLVKIGEVGRIVDRRPGDY 46 (63)
T ss_pred cccCCcCccccCCcEEEEEecCCCE
Confidence 3577888888887777777777765
No 100
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=20.83 E-value=1.8e+02 Score=16.63 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=30.5
Q ss_pred eeEEEEECCEEEEeccC-CccCCCHHHHHHHHHcccccCCCCEEEc
Q psy538 37 VPLWLKVNGELRQKSTT-GDMLFKTGDLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 37 ~~i~~~vNG~~~q~~~t-~~m~~~~~~li~~lS~~~tL~pGDvI~t 81 (97)
+.+++..+|+.+..-.. ..+ ++.+|.+.+.+.+.+.+.++.+.
T Consensus 2 ~~vK~~~~~~~~~~~~~~~~~--s~~~L~~~i~~~~~~~~~~~~l~ 45 (84)
T PF00564_consen 2 VRVKVRYGGDIRRIISLPSDV--SFDDLRSKIREKFGLLDEDFQLK 45 (84)
T ss_dssp EEEEEEETTEEEEEEEECSTS--HHHHHHHHHHHHHTTSTSSEEEE
T ss_pred EEEEEEECCeeEEEEEcCCCC--CHHHHHHHHHHHhCCCCccEEEE
Confidence 56888889988873333 333 89999999998777765555443
No 101
>PF09235 Ste50p-SAM: Ste50p, sterile alpha motif; InterPro: IPR015316 The fungal Ste50p SAM domain consists of five helices, which form a compact, globular fold. It is required for mediation of homodimerisation and heterodimerisation (and in some cases oligomerisation) of the protein []. ; PDB: 1UQV_A 1Z1V_A.
Probab=20.70 E-value=74 Score=19.36 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=16.9
Q ss_pred cCCCHHHHHHHHHcccccCCCCEE
Q psy538 56 MLFKTGDLISYISQHMTLEPYDLI 79 (97)
Q Consensus 56 m~~~~~~li~~lS~~~tL~pGDvI 79 (97)
+-|++.++++|......|.-+|-+
T Consensus 4 ~~Wsv~eVv~WC~~~L~l~~~d~l 27 (75)
T PF09235_consen 4 SNWSVDEVVSWCISSLELDDEDPL 27 (75)
T ss_dssp TT--HHHHHHHHHHHHSS-TTSCH
T ss_pred ccccHHHHHHHHHHhcCCCCCCHH
Confidence 569999999999988777777643
No 102
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=20.66 E-value=48 Score=17.15 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=12.9
Q ss_pred CcccccCCCCCcccCCc
Q psy538 9 PWTVGKGFDTACPVSDF 25 (97)
Q Consensus 9 ~w~~aK~~d~~~~lGp~ 25 (97)
|=...-+||.|.||+++
T Consensus 17 PGC~nvCyD~~fPiSh~ 33 (34)
T smart00037 17 PGCENVCYDQAFPISHV 33 (34)
T ss_pred CCccceeccccccCccC
Confidence 44567789999999864
No 103
>KOG3568|consensus
Probab=20.65 E-value=2e+02 Score=23.87 Aligned_cols=47 Identities=17% Similarity=0.111 Sum_probs=33.2
Q ss_pred ceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcC
Q psy538 36 DVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTG 82 (97)
Q Consensus 36 ~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tG 82 (97)
.+..+....|+....-+-++-.-.--+=+.+|-...++.|||.+.|-
T Consensus 404 kv~t~hfR~g~e~~~vnrDdhysphfQe~q~Lk~vv~VlPGD~LiTt 450 (603)
T KOG3568|consen 404 KVRTRHFRKGKEMKLVNRDDHYSPHFQEFQYLKEVVTVLPGDNLITT 450 (603)
T ss_pred eeEeEeecCCceeeeeccccccChhHHHHHhhcccceecCCCceEEE
Confidence 34455556777776666555443334667899999999999999873
No 104
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=20.48 E-value=62 Score=18.19 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=8.8
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 42 ~gl~~GD~I~~ 52 (85)
T smart00228 42 AGLKVGDVILE 52 (85)
T ss_pred cCCCCCCEEEE
Confidence 33999999975
No 105
>PRK06437 hypothetical protein; Provisional
Probab=20.41 E-value=1.4e+02 Score=17.17 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=7.7
Q ss_pred eEEEEECCEEEE
Q psy538 38 PLWLKVNGELRQ 49 (97)
Q Consensus 38 ~i~~~vNG~~~q 49 (97)
.+.+.+||+.+.
T Consensus 36 ~vaV~vNg~iv~ 47 (67)
T PRK06437 36 EYVVIVNGSPVL 47 (67)
T ss_pred cEEEEECCEECC
Confidence 455567777763
No 106
>PRK08433 flagellar motor switch protein; Validated
Probab=20.09 E-value=86 Score=20.34 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.6
Q ss_pred cccccCCCCEEEcCCCC
Q psy538 69 QHMTLEPYDLILTGKAG 85 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp~ 85 (97)
..+.|++||+|..-.+.
T Consensus 49 dlL~Lq~GDVI~Ld~~~ 65 (111)
T PRK08433 49 EILKFEKGSVIDLEKPA 65 (111)
T ss_pred HHhCCCCCCEEEeCCCC
Confidence 45689999999987764
No 107
>PRK11470 hypothetical protein; Provisional
Probab=20.03 E-value=70 Score=22.86 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=11.7
Q ss_pred cccCCCCEEEcCCC
Q psy538 71 MTLEPYDLILTGKA 84 (97)
Q Consensus 71 ~tL~pGDvI~tGTp 84 (97)
..|+.||||+..++
T Consensus 7 ~~l~~GDLvF~~~~ 20 (200)
T PRK11470 7 AEYEIGDIVFTCIG 20 (200)
T ss_pred CCCCCCCEEEEeCC
Confidence 47999999999763
Done!