Query psy538
Match_columns 97
No_of_seqs 152 out of 1078
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 01:05:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy538.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/538hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l53_A Putative fumarylacetoac 100.0 1.2E-34 4.1E-39 207.1 7.9 93 4-96 111-205 (224)
2 3s52_A Putative fumarylacetoac 100.0 5.4E-35 1.8E-39 208.4 4.8 92 5-96 116-207 (221)
3 3r6o_A 2-hydroxyhepta-2,4-dien 100.0 8.6E-34 2.9E-38 212.3 8.8 90 7-96 207-304 (329)
4 4dbf_A 2-hydroxyhepta-2,4-dien 100.0 5.3E-34 1.8E-38 210.3 5.4 96 1-96 171-271 (288)
5 3rr6_A Putative uncharacterize 100.0 6.5E-34 2.2E-38 207.8 5.1 94 1-96 153-246 (265)
6 1saw_A Hypothetical protein FL 100.0 6.5E-33 2.2E-37 197.8 8.6 92 5-96 115-206 (225)
7 1wzo_A HPCE; structural genomi 100.0 1.5E-32 5.2E-37 198.0 8.3 96 1-96 132-228 (246)
8 2dfu_A Probable 2-hydroxyhepta 100.0 3.6E-32 1.2E-36 198.2 7.8 94 1-96 149-242 (264)
9 1gtt_A 4-hydroxyphenylacetate 100.0 3.8E-31 1.3E-35 203.2 8.4 96 1-96 311-408 (429)
10 1nkq_A Hypothetical 28.8 kDa p 100.0 2E-31 6.9E-36 193.9 6.5 91 6-96 134-229 (259)
11 2q18_X 2-keto-3-deoxy-D-arabin 100.0 5.9E-30 2E-34 188.5 6.1 96 1-96 168-272 (293)
12 1gtt_A 4-hydroxyphenylacetate 100.0 2.9E-29 1E-33 192.7 8.8 88 6-96 102-189 (429)
13 3lzk_A Fumarylacetoacetate hyd 99.9 5.2E-28 1.8E-32 182.7 6.6 79 6-87 204-289 (359)
14 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 99.9 7E-27 2.4E-31 170.1 2.5 89 7-96 157-252 (267)
15 2wqt_A 2-keto-4-pentenoate hyd 99.9 3.7E-26 1.3E-30 166.5 4.8 88 7-96 145-246 (270)
16 1hyo_A Fumarylacetoacetate hyd 99.9 3.6E-24 1.2E-28 164.5 4.0 86 7-94 248-363 (421)
17 2kl0_A Putative thiamin biosyn 80.0 2.7 9.1E-05 24.2 3.9 44 40-88 2-65 (73)
18 1f0z_A THis protein; ubiquitin 71.6 3.8 0.00013 22.6 2.9 25 40-68 2-26 (66)
19 1tyg_B YJBS; alpha beta barrel 71.6 4.2 0.00014 24.3 3.3 30 36-68 18-47 (87)
20 2cu3_A Unknown function protei 69.6 10 0.00035 20.7 4.5 23 41-68 2-24 (64)
21 1mg4_A Doublecortin, doublecor 64.8 5.1 0.00017 25.1 2.7 64 33-97 12-89 (113)
22 1ryj_A Unknown; beta/alpha pro 61.8 5.6 0.00019 22.3 2.3 27 38-68 4-34 (70)
23 1gxc_A CHK2, CDS1, serine/thre 57.4 5.7 0.00019 25.5 2.0 19 69-87 116-134 (149)
24 2dnf_A Doublecortin domain-con 53.8 2.5 8.6E-05 26.2 -0.2 52 35-86 13-68 (108)
25 3fm8_A Kinesin-like protein KI 50.0 9.4 0.00032 24.0 2.1 14 70-83 102-115 (124)
26 4egx_A Kinesin-like protein KI 49.3 11 0.00036 25.4 2.4 14 70-83 152-165 (184)
27 4ejq_A Kinesin-like protein KI 46.9 13 0.00043 24.1 2.4 14 70-83 122-135 (154)
28 2pie_A E3 ubiquitin-protein li 46.1 14 0.00046 23.3 2.4 15 70-84 89-103 (138)
29 3hx1_A SLR1951 protein; P74513 44.8 19 0.00064 22.6 3.0 15 71-85 94-108 (131)
30 2k5p_A THis protein, thiamine- 41.6 24 0.00082 20.2 2.9 48 39-88 1-69 (78)
31 4h87_A Kanadaptin; FHA domain 39.8 18 0.00062 22.7 2.3 14 70-83 108-121 (130)
32 3els_A PRE-mRNA leakage protei 39.7 14 0.00048 24.1 1.8 16 70-85 131-146 (158)
33 1wln_A Afadin; beta sandwich, 39.2 12 0.00041 23.0 1.3 15 69-83 91-105 (120)
34 3gqs_A Adenylate cyclase-like 38.8 9.9 0.00034 22.7 0.9 14 70-83 81-94 (106)
35 1g3g_A Protien kinase SPK1; FH 38.3 22 0.00074 23.1 2.5 15 70-84 121-135 (164)
36 3elv_A PRE-mRNA leakage protei 37.9 18 0.0006 25.0 2.1 16 70-85 178-193 (205)
37 1g6g_A Protein kinase RAD53; b 37.2 18 0.00061 22.4 1.9 16 70-85 93-108 (127)
38 3po8_A RV0020C protein, putati 37.0 18 0.00061 21.3 1.8 14 70-83 76-89 (100)
39 3oun_A Putative uncharacterize 35.0 19 0.00065 23.6 1.8 13 71-83 139-151 (157)
40 2k1g_A Lipoprotein SPR; soluti 31.5 16 0.00055 23.3 1.0 14 71-84 66-79 (135)
41 2csw_A Ubiquitin ligase protei 31.3 16 0.00054 23.2 0.9 15 70-84 97-111 (145)
42 2i6v_A General secretion pathw 30.2 21 0.00071 20.2 1.3 12 70-81 34-45 (87)
43 2eaq_A LIM domain only protein 29.3 22 0.00074 20.0 1.3 11 71-81 44-54 (90)
44 4gjz_A Lysine-specific demethy 29.2 18 0.00063 23.7 1.0 12 70-81 202-213 (235)
45 3gt2_A Putative uncharacterize 28.9 23 0.00078 22.4 1.4 14 71-84 88-101 (142)
46 2odd_A Protein CBFA2T1; MYND z 28.6 13 0.00045 20.3 0.2 14 72-85 3-16 (64)
47 2d99_A Muscle, general transcr 28.3 35 0.0012 20.6 2.1 23 70-92 36-58 (90)
48 1eik_A RNA polymerase subunit 28.3 25 0.00085 20.6 1.4 12 68-79 46-57 (77)
49 1uht_A Expressed protein; FHA 28.3 12 0.0004 22.8 -0.1 16 70-85 90-105 (118)
50 2jyx_A Lipoprotein SPR; soluti 27.9 22 0.00074 22.4 1.1 14 71-84 66-79 (136)
51 2hbw_A NLP/P60 protein; NLP/P6 27.8 22 0.00076 24.7 1.3 15 71-85 159-173 (235)
52 4ayb_H DNA-directed RNA polyme 27.8 18 0.00063 21.4 0.7 12 68-79 52-63 (84)
53 2pa1_A PDZ and LIM domain prot 27.6 24 0.00083 19.7 1.3 11 71-81 42-52 (87)
54 2i4s_A General secretion pathw 27.5 24 0.00082 20.7 1.3 11 71-81 53-63 (105)
55 2pkt_A PDZ and LIM domain prot 27.2 25 0.00085 19.8 1.3 11 71-81 43-53 (91)
56 1m5z_A GRIP, AMPA receptor int 27.2 25 0.00085 19.8 1.3 10 72-81 49-58 (91)
57 2xt9_B Putative signal transdu 26.8 36 0.0012 20.5 2.0 14 70-83 84-97 (115)
58 3kw0_A Cysteine peptidase; str 26.6 25 0.00085 24.0 1.3 14 70-83 37-50 (214)
59 1vb7_A PDZ and LIM domain 2; P 25.4 28 0.00096 19.8 1.3 11 71-81 46-56 (94)
60 2jxo_A Ezrin-radixin-moesin-bi 25.2 28 0.00097 19.9 1.3 11 71-81 49-59 (98)
61 2rcz_A Tight junction protein 25.2 29 0.00099 18.7 1.3 10 72-81 38-48 (81)
62 2j58_A WZA, outer membrane lip 25.2 60 0.002 23.8 3.3 39 37-83 191-231 (359)
63 2q9v_A Membrane-associated gua 25.1 29 0.00098 19.4 1.3 9 73-81 46-54 (90)
64 2dn4_A General transcription f 25.1 1.2E+02 0.004 18.6 4.1 25 70-95 36-60 (99)
65 2vsp_A PDZ domain-containing p 24.9 29 0.00099 19.6 1.3 11 71-81 43-53 (91)
66 1hmj_A RPB5, protein (subunit 24.8 26 0.00089 20.6 1.0 13 68-80 44-56 (78)
67 2kjp_A Uncharacterized protein 24.8 28 0.00097 20.1 1.2 10 72-81 17-26 (91)
68 2q3g_A PDZ and LIM domain prot 24.5 30 0.001 19.4 1.3 11 71-81 43-53 (89)
69 3bpu_A Membrane-associated gua 24.4 30 0.001 19.3 1.3 11 71-81 41-51 (88)
70 1r21_A Antigen KI-67; beta san 24.3 38 0.0013 20.8 1.8 15 69-83 86-100 (128)
71 2eeg_A PDZ and LIM domain prot 24.2 30 0.001 19.6 1.3 11 71-81 48-58 (94)
72 2qkv_A Inactivation-NO-after-p 24.2 30 0.001 19.8 1.3 9 73-81 50-58 (96)
73 1mfg_A ERB-B2 interacting prot 24.1 31 0.001 19.6 1.3 10 72-81 51-60 (95)
74 2vwr_A Ligand of NUMB protein 24.1 31 0.001 19.6 1.3 9 73-81 48-56 (95)
75 2i04_A Membrane-associated gua 24.1 31 0.0011 19.1 1.3 10 72-81 42-52 (85)
76 2uzc_A Human pdlim5, PDZ and L 24.0 31 0.0011 19.2 1.3 10 72-81 44-53 (88)
77 2w4f_A Protein LAP4; structura 24.0 31 0.0011 19.5 1.3 10 72-81 51-60 (97)
78 2kv8_A RGS12, regulator of G-p 23.8 35 0.0012 18.8 1.5 11 71-81 39-49 (83)
79 1ihj_A INAD; intermolecular di 23.8 31 0.0011 19.6 1.3 9 73-81 56-64 (98)
80 1ujv_A Membrane associated gua 23.6 31 0.0011 19.9 1.2 13 69-81 44-56 (96)
81 1rgw_A ZAsp protein; PDZ, cyph 23.5 26 0.00089 19.3 0.8 11 71-81 41-51 (85)
82 2he4_A Na(+)/H(+) exchange reg 23.4 32 0.0011 19.2 1.3 11 71-81 44-54 (90)
83 2qg1_A Multiple PDZ domain pro 23.2 33 0.0011 19.3 1.3 9 73-81 48-56 (92)
84 2jil_A GRIP1 protein, glutamat 23.1 33 0.0011 19.5 1.3 9 73-81 51-59 (97)
85 2kl1_A YLBL protein; structure 23.1 34 0.0011 19.7 1.3 10 72-81 21-30 (94)
86 3mvn_A UDP-N-acetylmuramate:L- 23.0 58 0.002 20.6 2.6 24 57-82 122-145 (163)
87 1dmz_A Protein (protein kinase 23.0 28 0.00094 22.5 1.0 12 70-81 97-108 (158)
88 2jpe_A Nuclear inhibitor of pr 22.9 23 0.00078 22.3 0.5 17 69-85 113-129 (140)
89 3cyy_A Tight junction protein 22.9 34 0.0011 19.1 1.3 11 71-81 39-50 (92)
90 2fe5_A Presynaptic protein SAP 22.7 34 0.0012 19.2 1.3 10 72-81 50-60 (94)
91 2zpm_A Regulator of sigma E pr 22.7 34 0.0012 19.1 1.3 11 71-81 20-30 (91)
92 3i18_A LMO2051 protein; alpha- 22.5 34 0.0012 19.8 1.3 10 72-81 23-32 (100)
93 1jb3_A Agrin; neuromuscular ju 22.5 12 0.0004 24.3 -0.9 21 73-93 10-30 (131)
94 2f5y_A Regulator of G-protein 22.4 35 0.0012 19.3 1.3 10 72-81 41-50 (91)
95 1g9o_A NHE-RF; PDZ domain, com 22.4 35 0.0012 19.1 1.3 11 71-81 43-53 (91)
96 3pbi_A Invasion protein; pepti 22.2 35 0.0012 23.4 1.4 13 71-83 157-169 (214)
97 2opg_A Multiple PDZ domain pro 22.1 35 0.0012 19.4 1.3 9 73-81 49-57 (98)
98 2ego_A General receptor for ph 22.1 35 0.0012 19.4 1.3 12 70-81 52-63 (96)
99 1qav_A Alpha-1 syntrophin (res 22.1 31 0.0011 19.3 1.0 10 72-81 48-57 (90)
100 2la8_A Inactivation-NO-after-p 22.0 36 0.0012 20.1 1.3 9 73-81 44-52 (106)
101 2eeh_A PDZ domain-containing p 22.0 35 0.0012 19.6 1.2 11 71-81 52-62 (100)
102 2fcf_A Multiple PDZ domain pro 21.9 36 0.0012 19.5 1.3 9 73-81 58-66 (103)
103 2edp_A Fragment, shroom family 21.9 36 0.0012 19.7 1.3 10 72-81 53-62 (100)
104 1n7e_A AMPA receptor interacti 21.9 37 0.0013 19.3 1.3 10 72-81 47-57 (97)
105 1n7t_A 99-MER peptide of densi 21.6 37 0.0013 19.6 1.3 10 72-81 59-68 (103)
106 1x5q_A LAP4 protein; PDZ domai 21.5 37 0.0012 19.8 1.3 11 71-81 62-72 (110)
107 2kb3_A Oxoglutarate dehydrogen 21.3 34 0.0012 21.8 1.1 14 70-83 119-132 (143)
108 1uep_A Membrane associated gua 21.3 37 0.0013 19.6 1.3 11 71-81 50-61 (103)
109 1o6a_A Putative flagellar moto 21.2 26 0.00089 20.9 0.5 15 69-83 36-50 (96)
110 2iwn_A Multiple PDZ domain pro 21.2 38 0.0013 19.0 1.3 9 73-81 52-60 (97)
111 2v90_A PDZ domain-containing p 20.9 34 0.0011 19.4 1.0 11 71-81 46-56 (96)
112 1wh1_A KIAA1095 protein; PDZ d 20.8 39 0.0013 20.3 1.3 11 71-81 64-75 (124)
113 1d5g_A Human phosphatase HPTP1 20.7 39 0.0013 19.1 1.3 11 71-81 49-60 (96)
114 2eje_A General transcription f 20.4 51 0.0018 20.7 1.8 23 70-92 50-72 (114)
115 2k4v_A Uncharacterized protein 20.3 1.5E+02 0.0053 18.8 4.0 39 37-75 43-83 (125)
116 4fyl_A Ribosome hibernation pr 20.3 87 0.003 18.2 2.8 35 35-69 48-83 (95)
117 2jik_A Synaptojanin-2 binding 20.2 41 0.0014 19.3 1.3 10 72-81 54-64 (101)
118 2d90_A PDZ domain containing p 20.2 45 0.0015 19.1 1.5 12 70-81 45-56 (102)
119 3id1_A Regulator of sigma E pr 20.2 41 0.0014 19.4 1.3 12 70-81 17-28 (95)
120 4e34_A Golgi-associated PDZ an 20.1 36 0.0012 18.9 1.0 11 71-81 45-55 (87)
121 3sfj_A TAX1-binding protein 3; 20.1 41 0.0014 19.3 1.3 11 71-81 61-71 (104)
122 1wha_A KIAA0147 protein, scrib 20.0 41 0.0014 19.5 1.3 9 73-81 57-65 (105)
123 2edv_A FERM and PDZ domain-con 20.0 33 0.0011 19.7 0.8 11 71-81 46-56 (96)
No 1
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=100.00 E-value=1.2e-34 Score=207.12 Aligned_cols=93 Identities=32% Similarity=0.600 Sum_probs=88.9
Q ss_pred hhcCCCcccccCCCCCcccCCcccCC--CCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEc
Q psy538 4 REHGLPWTVGKGFDTACPVSDFIPEH--EIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILT 81 (97)
Q Consensus 4 ~~~~~~w~~aK~~d~~~~lGp~v~~~--~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~t 81 (97)
++++.||.+||+||+|||+|||++.+ ++.|+.++.++++|||+++|++++++|+|+++++|+|+|++++|+|||||+|
T Consensus 111 ~~~g~~w~~aK~fd~~~plGp~v~~~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~tL~pGDvI~T 190 (224)
T 3l53_A 111 KEKGHPWERAKSFDGACPLTEFVAVNLASEDEWQAIGLTLEKNGQFQQQGSSAEMLFPILPLIAHMSEHFSLQPGDVILT 190 (224)
T ss_dssp HHTTCCSHHHHSSTTSEEECCBBCCCCSSGGGGGGEEEEEEETTEEEEEEEGGGCSSCHHHHHHHHHHHSCBCTTCEEEC
T ss_pred hhcCCCcceeeccCCCcccCCcEeCchhhcCChhccEEEEEECCEEEEEEcHHHhcCCHHHHHHHHHCCCCcCCCCEEEc
Confidence 34688999999999999999999888 8888999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCcc
Q psy538 82 GKAGFILMFQQSPHS 96 (97)
Q Consensus 82 GTp~g~~~~~~g~~~ 96 (97)
|||.|++++++||+.
T Consensus 191 GTp~Gvg~l~~GD~v 205 (224)
T 3l53_A 191 GTPAGVGPLEVGDSL 205 (224)
T ss_dssp CCCSCCEECCTTCEE
T ss_pred CCCCCCEEcCCCCEE
Confidence 999999999999975
No 2
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=100.00 E-value=5.4e-35 Score=208.40 Aligned_cols=92 Identities=39% Similarity=0.633 Sum_probs=88.1
Q ss_pred hcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCC
Q psy538 5 EHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKA 84 (97)
Q Consensus 5 ~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp 84 (97)
+++.||.+||+||+|||+|||++.++++|+.++.+++++||+++|++++++|+|+++++|+|+|++++|+|||||+||||
T Consensus 116 ~~~~~~~~aK~~d~~~plGp~i~~~~~~d~~~l~i~l~vNGe~~q~g~t~~mi~~~~~lia~lS~~~tL~pGDvI~TGTp 195 (221)
T 3s52_A 116 KAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTP 195 (221)
T ss_dssp HHTCCSHHHHSSTTCEEECCBEEHHHHCCGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCBCTTCEEECCCC
T ss_pred ccCCCcceeecCCCCccccCceehhhcCCccceEEEEEECCEEEEEEcHHHccCCHHHHHHHHhCCCCcCCCCEEEeCCC
Confidence 45899999999999999999997778888999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcc
Q psy538 85 GFILMFQQSPHS 96 (97)
Q Consensus 85 ~g~~~~~~g~~~ 96 (97)
.|++++++||++
T Consensus 196 ~Gvg~l~~GD~v 207 (221)
T 3s52_A 196 QGVGPMQSGDML 207 (221)
T ss_dssp SCCEEECTTCEE
T ss_pred CcceecCCCCEE
Confidence 999999999975
No 3
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=100.00 E-value=8.6e-34 Score=212.27 Aligned_cols=90 Identities=27% Similarity=0.401 Sum_probs=86.9
Q ss_pred CCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCC
Q psy538 7 GLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 85 (97)
Q Consensus 7 ~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~ 85 (97)
+.||.++|+||+|||+|||+ +++++.|+.++.|+++|||+++|++++++|+|++++||+|+|++++|+|||||+||||+
T Consensus 207 ~~~w~~aK~fd~~~plGP~ivt~del~d~~~l~l~l~vNGe~~q~g~t~dMif~~~~lIa~lS~~~tL~pGDvI~TGTp~ 286 (329)
T 3r6o_A 207 QAQVVRGKGYPTFCPTGPWLFTTGSDTTFETFDFELRINGELRQSGSTVDMTLGFAEVVETVSATIALRAGDIILTGTPG 286 (329)
T ss_dssp CCCHHHHHCSTTSEEBCSCEEECTTCSSCCCCEEEEEETTEEEEEEEGGGCSSCHHHHHHHHHTTSCBCTTCEEECCCCS
T ss_pred CCccccccCcCcCcccCCeEcChhhcCChhhcEEEEEECCEEEEecCHHHhcCCHHHHHHHHHcCCCcCCCCEEEcCCcc
Confidence 88999999999999999996 89999899999999999999999999999999999999999999999999999999999
Q ss_pred Ccc-------cccCCCcc
Q psy538 86 FIL-------MFQQSPHS 96 (97)
Q Consensus 86 g~~-------~~~~g~~~ 96 (97)
|++ .+++||+.
T Consensus 287 GvG~~~~p~~~l~~GD~V 304 (329)
T 3r6o_A 287 GCGFQFDPPRYLRPGDVI 304 (329)
T ss_dssp CCGGGSSSCCCCCTTCEE
T ss_pred ccCCCCCCCccCCCCCEE
Confidence 998 79999974
No 4
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=100.00 E-value=5.3e-34 Score=210.29 Aligned_cols=96 Identities=27% Similarity=0.454 Sum_probs=89.5
Q ss_pred ChhhhcCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECC----EEEEeccCCccCCCHHHHHHHHHcccccCC
Q psy538 1 KHAREHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNG----ELRQKSTTGDMLFKTGDLISYISQHMTLEP 75 (97)
Q Consensus 1 ~~~~~~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG----~~~q~~~t~~m~~~~~~li~~lS~~~tL~p 75 (97)
|++|.++.||.++|+||+|||+|||+ +..++.|+.++.|+++||| +++|++++++|+|++++||+|+|++++|+|
T Consensus 171 Rd~Q~~~~~w~~aK~fd~~~plGP~ivt~~~~~d~~~l~i~~~vNG~~~~e~~Q~~~t~~mi~~~~~lIa~lS~~~tL~p 250 (288)
T 4dbf_A 171 RDLQFADGQWARAKGIDTFGPIGPWIETDINSIDLDNLPIKARLTHDGETQLKQDSNSNQMIMKMGEIIEFITASMTLLP 250 (288)
T ss_dssp HHHHHHHSSSHHHHHSTTCEEEEEEEECCGGGSCTTSCEEEEEEEETTEEEEEEEEEGGGBSSCHHHHHHHHHTTSCBCT
T ss_pred HHhhhccCCccccccCCCCceeCCccccccccCCccccEEEEEEcCCcceEEEEecCHHHhcCCHHHHHHHHhCCCCcCC
Confidence 57888889999999999999999998 4434458899999999999 999999999999999999999999999999
Q ss_pred CCEEEcCCCCCcccccCCCcc
Q psy538 76 YDLILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 76 GDvI~tGTp~g~~~~~~g~~~ 96 (97)
||||+||||.|++++++||+.
T Consensus 251 GDvI~TGTP~Gvg~l~~GD~v 271 (288)
T 4dbf_A 251 GDVIATGSPAGTEAMVDGDYI 271 (288)
T ss_dssp TCEEECCCCSCCCBCCTTCEE
T ss_pred CCEEEcCCCCCCeecCCCCEE
Confidence 999999999999999999975
No 5
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=100.00 E-value=6.5e-34 Score=207.77 Aligned_cols=94 Identities=33% Similarity=0.566 Sum_probs=88.7
Q ss_pred ChhhhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEE
Q psy538 1 KHAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 1 ~~~~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~ 80 (97)
|++|+++.||.++|+||+|||+|||+.. ++ |+.++.++++|||+++|++++++|+|+++++|+|+|++++|+|||||+
T Consensus 153 Rd~q~~~~~w~~aK~fd~~~plGP~ivt-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lIa~lS~~~tL~pGDvI~ 230 (265)
T 3rr6_A 153 RDHQRADGQWTRAKGHDTFCPLGPWIVT-DL-DPADLEIRTEVNGQVRQRSRTSLLLHDVGAIVEWVSAVMTLLPGDVIL 230 (265)
T ss_dssp HHHHHHHSSSHHHHHSTTCEEEEEEEES-SC-CGGGCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHHHSCBCTTCEEE
T ss_pred HHhhhccCCcceecccCCCcccCCcCcC-CC-CcccCEEEEEECCEEEEEECHHhhcCCHHHHHHHHhcCCCcCCCCEEE
Confidence 5788889999999999999999999853 35 789999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCcc
Q psy538 81 TGKAGFILMFQQSPHS 96 (97)
Q Consensus 81 tGTp~g~~~~~~g~~~ 96 (97)
||||.|++++++||+.
T Consensus 231 TGTp~Gvg~l~~GD~v 246 (265)
T 3rr6_A 231 TGTPEGVGPIVDGDTV 246 (265)
T ss_dssp CCCCSCCEECCTTCEE
T ss_pred eCCCCCceeCCCCCEE
Confidence 9999999999999974
No 6
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=99.98 E-value=6.5e-33 Score=197.82 Aligned_cols=92 Identities=46% Similarity=0.829 Sum_probs=88.1
Q ss_pred hcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCC
Q psy538 5 EHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKA 84 (97)
Q Consensus 5 ~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp 84 (97)
+.+.||.+||+||+|||+|||++.+++.|+.++.++++|||+++|++++++|+|++.++|+|||++++|+|||||+||||
T Consensus 115 ~~~~~~~~aK~~d~~~plGp~v~~~~~~d~~~l~l~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~tL~~GDvI~TGTp 194 (225)
T 1saw_A 115 KKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTP 194 (225)
T ss_dssp HHTCCSHHHHCSTTCEEECCCEETTSCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCC
T ss_pred ccCCCceEeecCCCCEecCCcccHHHcCCCceeEEEEEECCEEEEEEcHHHcCCCHHHHHHHHhCCCCcCCCCEEEcCCC
Confidence 34799999999999999999998888888999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCcc
Q psy538 85 GFILMFQQSPHS 96 (97)
Q Consensus 85 ~g~~~~~~g~~~ 96 (97)
.|++++++||++
T Consensus 195 ~Gvg~l~~Gd~v 206 (225)
T 1saw_A 195 KGVGPVKENDEI 206 (225)
T ss_dssp SCCEEECTTCEE
T ss_pred CCceeCCCCCEE
Confidence 999999999974
No 7
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=99.97 E-value=1.5e-32 Score=197.97 Aligned_cols=96 Identities=38% Similarity=0.552 Sum_probs=88.6
Q ss_pred ChhhhcC-CCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEE
Q psy538 1 KHAREHG-LPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLI 79 (97)
Q Consensus 1 ~~~~~~~-~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI 79 (97)
|++|.+. .||.++|+||+|||+|||+..+++.|+.+++++++|||+++|++++++|+|++.++|+|+|++++|+|||||
T Consensus 132 rd~q~~~~~~~~~~K~~d~~~~lGp~i~~~~i~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL~pGDvI 211 (246)
T 1wzo_A 132 RDYVTNTFRPPIRAKGRDTFLPLGPFLVVEEVEDPQDLWLRAYVNGELRQEGHTSRMLYSVAELLEFISEFMTLEPYDVL 211 (246)
T ss_dssp GGGC----CCCHHHHCSTTCEEEEEEEECSCCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEE
T ss_pred HHhcccccCCceeeccCCCCEEECCcCcHHHcCCCcccEEEEEECCEEEEeeCHHHhCCCHHHHHHHHhCCCCcCCCCEE
Confidence 4677766 899999999999999999777888789999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCcccccCCCcc
Q psy538 80 LTGKAGFILMFQQSPHS 96 (97)
Q Consensus 80 ~tGTp~g~~~~~~g~~~ 96 (97)
+||||+|++++++||++
T Consensus 212 ~TGTp~gvg~l~~GD~v 228 (246)
T 1wzo_A 212 LTGTPKGISQVRPGDVM 228 (246)
T ss_dssp ECCCCCCSCEECTTCEE
T ss_pred EeCCCCCceECCCCCEE
Confidence 99999999999999975
No 8
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=99.97 E-value=3.6e-32 Score=198.20 Aligned_cols=94 Identities=31% Similarity=0.571 Sum_probs=88.8
Q ss_pred ChhhhcCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEE
Q psy538 1 KHAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 1 ~~~~~~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~ 80 (97)
|++|.++.+|.++|+||+|||+|||+.. ++ |+.++.++++|||+++|++++++|+|+++++|+|+|++++|+|||||+
T Consensus 149 Rd~q~~~~~~~~aK~~d~~~plGp~i~~-~~-d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~lia~ls~~~tL~pGDvI~ 226 (264)
T 2dfu_A 149 RDVQKKDLQWVRAKSADKFLPLGPWLET-DL-NPQDTWVRTYVNGTLRQEGHTSQMIFSVAEILSYISTFMTLEPLDVVL 226 (264)
T ss_dssp HHHHHHSSSSHHHHCSTTCEEEEEEEES-SC-CTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEE
T ss_pred hhhhhccCCCceeecCCCCEEECCcCcc-cc-CCCccEEEEEECCEEEEEecHHHhhcCHHHHHHHHhcCCCcCCCCEEE
Confidence 4678888999999999999999999854 56 889999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCcc
Q psy538 81 TGKAGFILMFQQSPHS 96 (97)
Q Consensus 81 tGTp~g~~~~~~g~~~ 96 (97)
||||+|++++++||+.
T Consensus 227 TGTp~Gvg~l~~GD~v 242 (264)
T 2dfu_A 227 TGTPEGVGALRPGDRL 242 (264)
T ss_dssp CCCCSCCCBCCTTCEE
T ss_pred eCCCCCccccCCCCEE
Confidence 9999999999999975
No 9
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.97 E-value=3.8e-31 Score=203.20 Aligned_cols=96 Identities=34% Similarity=0.439 Sum_probs=91.0
Q ss_pred Ch-hhhcCCCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCE
Q psy538 1 KH-AREHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDL 78 (97)
Q Consensus 1 ~~-~~~~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDv 78 (97)
|+ +|+++.||.++|+||+|||+|||+ +.+++.|+.++.++++|||+++|++++++|+|++.++|+|+|++++|+||||
T Consensus 311 Rd~lq~~~~~w~~~K~~d~~~~lGp~iv~~~~~~d~~~l~i~l~vNGe~~q~g~~~~mi~~~~~lia~ls~~~tL~~GDv 390 (429)
T 1gtt_A 311 RDYLENYYRPNLRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDM 390 (429)
T ss_dssp GGGCCSSSSSCHHHHSCTTCEEBCSCCEEGGGCSCTTSCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCE
T ss_pred chhhhhhcCCccccccCCCCEEECCcccCHHHcCCCccceEEEEECCEEEEEeCHHHcCCCHHHHHHHHhCCCCcCCCCE
Confidence 45 577889999999999999999996 7888888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCcccccCCCcc
Q psy538 79 ILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 79 I~tGTp~g~~~~~~g~~~ 96 (97)
|+||||.|++++++||+.
T Consensus 391 I~TGTp~gvg~l~~GD~v 408 (429)
T 1gtt_A 391 IATGTPKGLSDVVPGDEV 408 (429)
T ss_dssp EECCCCSCCCBCCTTCEE
T ss_pred EEcCCCCCCeECCCCCEE
Confidence 999999999999999975
No 10
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=99.97 E-value=2e-31 Score=193.94 Aligned_cols=91 Identities=35% Similarity=0.545 Sum_probs=86.7
Q ss_pred cCCCcccccCCCCCcccCCcccCCCCCCC-----CceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEE
Q psy538 6 HGLPWTVGKGFDTACPVSDFIPEHEIKDP-----DDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLIL 80 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v~~~~~~d~-----~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~ 80 (97)
++.+|.+||+||+|||+||||+.+++.++ .++.++++|||+++|++++++|+|++++||+|+|++++|+|||||+
T Consensus 134 ~~~~~~~aK~~d~~~p~Gp~V~~~~~~d~~~dl~~~l~l~l~vNGe~~q~g~t~~m~~~~~~Lia~lS~~~tL~pGDvI~ 213 (259)
T 1nkq_A 134 KGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLMLHPLHKILQHISTMISLEPGDIIL 213 (259)
T ss_dssp HTCCSHHHHHSTTCEEBCCCEEGGGGGGGTTCCTTTEEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEE
T ss_pred cCCCcceeeccCcCCCcceEEECccccCcccccccceEEEEEECCEEEEEEcHHHcCCCHHHHHHHHhCCCCcCCCCEEE
Confidence 58999999999999999999877777677 8899999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCcc
Q psy538 81 TGKAGFILMFQQSPHS 96 (97)
Q Consensus 81 tGTp~g~~~~~~g~~~ 96 (97)
||||.|++++++||++
T Consensus 214 TGTp~Gvg~l~~GD~v 229 (259)
T 1nkq_A 214 TGTPAGVGELKPGDRV 229 (259)
T ss_dssp CCCCSCCEEECTTCEE
T ss_pred eCCCCCcEecCCCCEE
Confidence 9999999999999975
No 11
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=99.96 E-value=5.9e-30 Score=188.54 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=86.4
Q ss_pred ChhhhcC-CCcccccCCCCCcccCCcc-cCCCCCCCCceeEEEEE--CCEEEEec--cCCccCCCHHHHHHHHHcccccC
Q psy538 1 KHAREHG-LPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKV--NGELRQKS--TTGDMLFKTGDLISYISQHMTLE 74 (97)
Q Consensus 1 ~~~~~~~-~~w~~aK~~d~~~~lGp~v-~~~~~~d~~~~~i~~~v--NG~~~q~~--~t~~m~~~~~~li~~lS~~~tL~ 74 (97)
|++|.+. .+|.++|+||+|||+|||+ +.+++.|+.++.++++| ||+++|++ ++++|+|++++||+|+|++++|+
T Consensus 168 Rd~q~~~~~~~~~aK~~d~~~plGP~ivt~dei~d~~~l~i~l~v~~NGe~~q~g~~~t~~mi~~~~~li~~ls~~~tL~ 247 (293)
T 2q18_X 168 RDLEAENPLYLPQSKIYAGCCAFGPVIVTSDEIKNPYSLDITLKIVREGRVFFEGSVNTNKMRRKIEEQIQYLIRDNPIP 247 (293)
T ss_dssp HHHHHHCGGGHHHHHCSTTCEEEEEEEECGGGCSCTTSCEEEEEEEETTEEEEEEEEEGGGBCSCHHHHHHHHHTTCCCC
T ss_pred ehhhhhcccCccccccCCCCEEECCcEeCHHHcCCcceeEEEEEEEECCEEEEECCCCHHHhccCHHHHHHHHHcCCCCC
Confidence 3566654 3567999999999999997 67788889999999988 99999998 69999999999999999999999
Q ss_pred CCCEEEcCC---CCCcccccCCCcc
Q psy538 75 PYDLILTGK---AGFILMFQQSPHS 96 (97)
Q Consensus 75 pGDvI~tGT---p~g~~~~~~g~~~ 96 (97)
|||||+||| |.++..+++||+.
T Consensus 248 pGDvI~TGTg~~p~~~~~l~~GD~v 272 (293)
T 2q18_X 248 DGTILTTGTAIVPGRDKGLKDEDIV 272 (293)
T ss_dssp TTEEEECCCSCCCCTTCCCCTTCEE
T ss_pred CCCEEECCCCCCCCCCcccCCCCEE
Confidence 999999999 9999999999975
No 12
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.96 E-value=2.9e-29 Score=192.72 Aligned_cols=88 Identities=24% Similarity=0.347 Sum_probs=83.9
Q ss_pred cCCCcccccCCCCCcccCCcccCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHcccccCCCCEEEcCCCC
Q psy538 6 HGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG 85 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~ 85 (97)
.+.||.++|+||+|||+||| +++.|+.++.++++|||+++|++++++|+|+++++|+|+|++++|+|||||+||||+
T Consensus 102 ~~~~~~~aK~fd~~~~lGp~---~~~~d~~~l~i~~~vNGe~~q~g~t~~mi~~~~~li~~ls~~~tL~~GDvI~TGTp~ 178 (429)
T 1gtt_A 102 FYRPAIKAKCRDGFCPIGET---VALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSALSEFATLNPGDAILLGTPQ 178 (429)
T ss_dssp SSSCCHHHHCSTTCEEBCCC---BCCSCCTTCEEEEEETTEEEEEEEGGGBSSCHHHHHHHHHTTSCBCTTCEEECCCCS
T ss_pred ccCCccccCCCCCCEEECCh---hhcCCccccEEEEEECCEEEEeCCHHHhcCCHHHHHHHHhcCCCcCCCCEEEEeccC
Confidence 46799999999999999999 567788999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCcc
Q psy538 86 FILMFQQSPHS 96 (97)
Q Consensus 86 g~~~~~~g~~~ 96 (97)
|++++++||+.
T Consensus 179 g~~~l~~GD~v 189 (429)
T 1gtt_A 179 ARVEIQPGDRV 189 (429)
T ss_dssp CCCEECTTCEE
T ss_pred cceecCCCCEE
Confidence 99999999975
No 13
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=99.94 E-value=5.2e-28 Score=182.75 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=73.8
Q ss_pred cCCCcccccCCCCCcccCCcc-cCCCCCCC-----CceeEEEEECCEEEEecc-CCccCCCHHHHHHHHHcccccCCCCE
Q psy538 6 HGLPWTVGKGFDTACPVSDFI-PEHEIKDP-----DDVPLWLKVNGELRQKST-TGDMLFKTGDLISYISQHMTLEPYDL 78 (97)
Q Consensus 6 ~~~~w~~aK~~d~~~~lGp~v-~~~~~~d~-----~~~~i~~~vNG~~~q~~~-t~~m~~~~~~li~~lS~~~tL~pGDv 78 (97)
++.+|.++|+ ||++|||+ ++|++.++ .++.|+++|||+++|+++ +++|+|++++||+|+|++++|+||||
T Consensus 204 ~g~~~~~~K~---~~~~gP~iVt~del~~~~~~~~~~L~l~~~vNGe~~q~~~~t~~Mif~~~~lIa~lS~~~tL~pGDv 280 (359)
T 3lzk_A 204 KGFGFYQSKP---SSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIVHAARTRPLSAGTI 280 (359)
T ss_dssp HTSCCSTTSC---CCEECSCEECHHHHGGGBCSSCBCSBEEEEETTEEEECCBTTSSCSSCHHHHHHHHTTTSCBCTTEE
T ss_pred cCCCcccccc---ccccCCccccHHHcCccccCCccceEEEEEECCEEEEcCcCcccccCCHHHHHHHHhCCCCcCCCCE
Confidence 4789999998 69999995 78888665 589999999999999999 99999999999999999999999999
Q ss_pred EEcCCCCCc
Q psy538 79 ILTGKAGFI 87 (97)
Q Consensus 79 I~tGTp~g~ 87 (97)
|+||||+|+
T Consensus 281 I~TGTpsGv 289 (359)
T 3lzk_A 281 IGSGTVSNK 289 (359)
T ss_dssp EECCSCCCC
T ss_pred EEcCCcCCC
Confidence 999999999
No 14
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=99.92 E-value=7e-27 Score=170.07 Aligned_cols=89 Identities=12% Similarity=0.145 Sum_probs=80.5
Q ss_pred CCCccccc-CCCCCcccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHccc-----ccCCCCEE
Q psy538 7 GLPWTVGK-GFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM-----TLEPYDLI 79 (97)
Q Consensus 7 ~~~w~~aK-~~d~~~~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~~~-----tL~pGDvI 79 (97)
+.+|..|| +|++++++|||+ +.+++ |+.++.+++++||+++|+|++++|+|+|.++|+|||+.+ +|+|||||
T Consensus 157 ~~~~~~Ad~~~~~~~~lGp~~v~~~~~-d~~~l~~~l~vNGe~~q~g~t~~ml~~p~~~i~~ls~~l~~~g~tL~~GDvI 235 (267)
T 2eb4_A 157 KVFDTISDNAANAGVILGGRPIKPDEL-DLRWISALMYRNGVIEETGVAAGVLNHPANGVAWLANKLAPYDVQLEAGQII 235 (267)
T ss_dssp HHHHHHHTGGGEEEEEECSCCBCTTSS-CGGGCEEEEEETTEEEEEEEGGGTTTSTTHHHHHHHHHHGGGTCCBCTTCEE
T ss_pred CccceeecccccccEEECCCcCCcccC-ChhhCeEEEEECCEEEEEecHHhcccCHHHHHHHHHHHHHHcCCCCCCCCEE
Confidence 34566665 789999999986 77776 899999999999999999999999999999999999865 99999999
Q ss_pred EcCCCCCcccccCCCcc
Q psy538 80 LTGKAGFILMFQQSPHS 96 (97)
Q Consensus 80 ~tGTp~g~~~~~~g~~~ 96 (97)
+||||.++.++++||++
T Consensus 236 ~TGT~~g~~~l~~GD~v 252 (267)
T 2eb4_A 236 LGGSFTRPVPARKGDTF 252 (267)
T ss_dssp ECCCSSCCEECCTTCEE
T ss_pred ECCCCCCCEECCCCCEE
Confidence 99999999999999975
No 15
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=99.92 E-value=3.7e-26 Score=166.55 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=81.7
Q ss_pred CCCcccccCCCCCc--------ccCCcc-cCCCCCCCCceeEEEEECCEEEEeccCCccCCCHHHHHHHHHc-----ccc
Q psy538 7 GLPWTVGKGFDTAC--------PVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ-----HMT 72 (97)
Q Consensus 7 ~~~w~~aK~~d~~~--------~lGp~v-~~~~~~d~~~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~-----~~t 72 (97)
.++|. +|+||++| ++|||+ +.+++ |+.++.+++++||+++|+|++++|+|+|.++|+|||+ +++
T Consensus 145 ~~~~~-~k~~d~~aDn~s~~~~~lGp~~v~~~~~-d~~~l~i~l~vNGe~~q~g~~~~ml~~p~~~v~~ls~~l~~~g~t 222 (270)
T 2wqt_A 145 IRDWS-IQFVDTVADNASCGVYVIGGPAQRPAGL-DLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEP 222 (270)
T ss_dssp BGGGC-CCHHHHHHTGGGCCEEEECBCCBCSTTC-CCSSCEEEEEETTEEEEEEEGGGTTTSHHHHHHHHHHHHHHTTCC
T ss_pred ccccC-CChhcEEccCccCCCEeECcCcCCcccC-ChhhCeEEEEECCEEEEEEchhhccCCHHHHHHHHHHHHHhcCCC
Confidence 34564 99999999 999996 77887 8999999999999999999999999999999999998 799
Q ss_pred cCCCCEEEcCCCCCcccccCCCcc
Q psy538 73 LEPYDLILTGKAGFILMFQQSPHS 96 (97)
Q Consensus 73 L~pGDvI~tGTp~g~~~~~~g~~~ 96 (97)
|+|||||+||||.++.++++||++
T Consensus 223 L~~GdvI~TGT~~g~~~l~~GD~v 246 (270)
T 2wqt_A 223 LRTGDIILTGALGPMVAVNAGDRF 246 (270)
T ss_dssp BCTTCEEEEEESSCCEECCTTCEE
T ss_pred cCCCCEEEcCCCCCCeeCCCCCEE
Confidence 999999999999999999999975
No 16
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=99.89 E-value=3.6e-24 Score=164.52 Aligned_cols=86 Identities=21% Similarity=0.233 Sum_probs=73.8
Q ss_pred CCCcccccCCCCCcccCCcc-cCCCCC--------------------CCC--ceeEEEEEC------CEEEEeccCCccC
Q psy538 7 GLPWTVGKGFDTACPVSDFI-PEHEIK--------------------DPD--DVPLWLKVN------GELRQKSTTGDML 57 (97)
Q Consensus 7 ~~~w~~aK~~d~~~~lGp~v-~~~~~~--------------------d~~--~~~i~~~vN------G~~~q~~~t~~m~ 57 (97)
+.+|.++|+||++ +|||| ++++++ ++. ++.++++|| |+++|++++++|+
T Consensus 248 plg~~~aK~f~t~--iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~~~~~m~ 325 (421)
T 1hyo_A 248 PLGPFLGKSFGTT--ISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMY 325 (421)
T ss_dssp TTCCCHHHHTCEE--ECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCS
T ss_pred cCCCccccCcCCC--CCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEecCHHhhc
Confidence 4578899999996 99997 566553 233 688999999 9999999999999
Q ss_pred CCHHHHHHHHH-cccccCCCCEEEcCCCCCcccccCCC
Q psy538 58 FKTGDLISYIS-QHMTLEPYDLILTGKAGFILMFQQSP 94 (97)
Q Consensus 58 ~~~~~li~~lS-~~~tL~pGDvI~tGTp~g~~~~~~g~ 94 (97)
|+++++|+|+| ++++|+|||||+||||+|+++.+.|+
T Consensus 326 ~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~ 363 (421)
T 1hyo_A 326 WTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGS 363 (421)
T ss_dssp SCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCB
T ss_pred CCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcc
Confidence 99999999995 89999999999999999998754443
No 17
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=80.04 E-value=2.7 Score=24.17 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=29.0
Q ss_pred EEEECCEEEEeccCCccCCCHHHHHHHHH--------------------cccccCCCCEEEcCCCCCcc
Q psy538 40 WLKVNGELRQKSTTGDMLFKTGDLISYIS--------------------QHMTLEPYDLILTGKAGFIL 88 (97)
Q Consensus 40 ~~~vNG~~~q~~~t~~m~~~~~~li~~lS--------------------~~~tL~pGDvI~tGTp~g~~ 88 (97)
.+.|||+.++- .. -++.+||+.+. ....|..||.|--=+|-+-|
T Consensus 2 ~I~vNG~~~e~-~~----~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 2 LVTINGEQREV-QS----ASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp CEEETTEEECC-CC----SBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCCCCC
T ss_pred EEEECCEEEEc-CC----CcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEccccCC
Confidence 46778876653 11 46777777765 13678999988777765544
No 18
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=71.63 E-value=3.8 Score=22.63 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=15.2
Q ss_pred EEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 40 WLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 40 ~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
++++||+.++-... -++.+|++++.
T Consensus 2 ~i~vNg~~~~~~~~----~tv~~ll~~l~ 26 (66)
T 1f0z_A 2 QILFNDQAMQCAAG----QTVHELLEQLD 26 (66)
T ss_dssp CEEESSCEECCCTT----CCHHHHHHHHT
T ss_pred EEEECCEEEEcCCC----CcHHHHHHHcC
Confidence 46778876652221 26777777775
No 19
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=71.60 E-value=4.2 Score=24.26 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=18.1
Q ss_pred ceeEEEEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 36 DVPLWLKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 36 ~~~i~~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
...|++.|||+.++-... .-++.+|++.+.
T Consensus 18 ~~~M~I~vNGe~~el~~~---~~Tv~dLL~~L~ 47 (87)
T 1tyg_B 18 GGRHMLQLNGKDVKWKKD---TGTIQDLLASYQ 47 (87)
T ss_dssp ----CEEETTEEECCSSS---CCBHHHHHHHTT
T ss_pred CcceEEEECCEEEECCCC---CCcHHHHHHHhC
Confidence 456788999998763221 127888888875
No 20
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=69.59 E-value=10 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=14.8
Q ss_pred EEECCEEEEeccCCccCCCHHHHHHHHH
Q psy538 41 LKVNGELRQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 41 ~~vNG~~~q~~~t~~m~~~~~~li~~lS 68 (97)
+++||+.++- .. -++.+|++++.
T Consensus 2 i~vNg~~~~~-~~----~tv~~ll~~l~ 24 (64)
T 2cu3_A 2 VWLNGEPRPL-EG----KTLKEVLEEMG 24 (64)
T ss_dssp EEETTEEECC-TT----CCHHHHHHHHT
T ss_pred EEECCEEEEc-CC----CcHHHHHHHcC
Confidence 5678877653 11 36777777775
No 21
>1mg4_A Doublecortin, doublecortin-like kinase (N-terminal domain); DCX domain, microtubule bundling, cortex development, transferase; 1.50A {Homo sapiens} SCOP: d.15.11.1 PDB: 1mfw_A 1mjd_A 2bqq_A 2xrp_I*
Probab=64.78 E-value=5.1 Score=25.13 Aligned_cols=64 Identities=11% Similarity=0.039 Sum_probs=43.8
Q ss_pred CCCceeEEEEECCEEEEeccC----CccCCCHHHHHHHHHc----ccccCCCCEEEcCCCCC------cccccCCCccC
Q psy538 33 DPDDVPLWLKVNGELRQKSTT----GDMLFKTGDLISYISQ----HMTLEPYDLILTGKAGF------ILMFQQSPHSV 97 (97)
Q Consensus 33 d~~~~~i~~~vNG~~~q~~~t----~~m~~~~~~li~~lS~----~~tL~pGDvI~tGTp~g------~~~~~~g~~~~ 97 (97)
.+....|.++.||+....|-. ..-+.+++.|++.|++ .+.|.-| |=---||.| ...++.|+.||
T Consensus 12 ~~kak~I~~yrNGD~~~~G~~~~v~~~~~~tfd~LL~~lT~~Ls~~v~lp~G-VR~lyt~~G~~~I~sl~dL~dG~~YV 89 (113)
T 1mg4_A 12 EKKAKKVRFYRNGDRYFKGIVYAISPDRFRSFEALLADLTRTLSDNVNLPQG-VRTIYTIDGLKKISSLDQLVEGESYV 89 (113)
T ss_dssp -CCSEEEEEEETTCSSCCCEEEEECTTTCSSHHHHHHHHHHHHCCSSSSTTC-CCEEEETTSSCBCCSGGGCCTTCEEE
T ss_pred CCCceEEEEEECCCCCCCCEEEEECccccCCHHHHHHHHHHHHhhcCCCCcc-eeEEEcCCCCeEcCCHHHhhCCCEEE
Confidence 346788999999987666542 3458899999999855 5588888 733334554 34456666654
No 22
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=61.81 E-value=5.6 Score=22.30 Aligned_cols=27 Identities=7% Similarity=0.072 Sum_probs=15.8
Q ss_pred eEEEEECCEE----EEeccCCccCCCHHHHHHHHH
Q psy538 38 PLWLKVNGEL----RQKSTTGDMLFKTGDLISYIS 68 (97)
Q Consensus 38 ~i~~~vNG~~----~q~~~t~~m~~~~~~li~~lS 68 (97)
.|+++|||+. ++-. +. -++.+|++++.
T Consensus 4 ~m~i~vNg~~~~~~~~~~--~~--~tv~~Ll~~l~ 34 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESG--AP--RRIKDVLGELE 34 (70)
T ss_dssp CEEEEEEETTEEEEEEES--SC--CBHHHHHHHTT
T ss_pred eEEEEEeCccCceeEECC--CC--CcHHHHHHHhC
Confidence 3677788775 3211 11 37777777763
No 23
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=57.38 E-value=5.7 Score=25.54 Aligned_cols=19 Identities=11% Similarity=-0.076 Sum_probs=15.3
Q ss_pred cccccCCCCEEEcCCCCCc
Q psy538 69 QHMTLEPYDLILTGKAGFI 87 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp~g~ 87 (97)
+...|++||+|.-|.+...
T Consensus 116 ~~~~L~~GD~I~lG~~~~~ 134 (149)
T 1gxc_A 116 KRRPLNNNSEIALSLSRNK 134 (149)
T ss_dssp CEEECCTTEEEEESSTTCE
T ss_pred CeEECCCCCEEEECCCCCe
Confidence 3578999999999987543
No 24
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=53.82 E-value=2.5 Score=26.23 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=35.3
Q ss_pred CceeEEEEECCEEEEeccC----CccCCCHHHHHHHHHcccccCCCCEEEcCCCCC
Q psy538 35 DDVPLWLKVNGELRQKSTT----GDMLFKTGDLISYISQHMTLEPYDLILTGKAGF 86 (97)
Q Consensus 35 ~~~~i~~~vNG~~~q~~~t----~~m~~~~~~li~~lS~~~tL~pGDvI~tGTp~g 86 (97)
....|.+..||.....+.. .....+++++++.+++.+.|.-|-|=--.|+.|
T Consensus 13 ~pk~I~v~rNGD~~~~g~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G 68 (108)
T 2dnf_A 13 EPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEG 68 (108)
T ss_dssp CCEEEEECBTTCSSSCCEEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEETTC
T ss_pred cceEEEEEeCCCCCCCCEEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcCCC
Confidence 3467888889876443321 336789999999999999998774333334443
No 25
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=49.98 E-value=9.4 Score=24.04 Aligned_cols=14 Identities=36% Similarity=0.361 Sum_probs=11.6
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
-..|+.||.|.-|.
T Consensus 102 ~~~L~~GD~I~lG~ 115 (124)
T 3fm8_A 102 PIQLHHGDRILWGN 115 (124)
T ss_dssp CEEECTTCEEEETT
T ss_pred cEECCCCCEEEECC
Confidence 46799999999884
No 26
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=49.34 E-value=11 Score=25.37 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.9
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|+.||.|.-|.
T Consensus 152 ~~~L~~GDrI~lG~ 165 (184)
T 4egx_A 152 PSILRSGNRIIMGK 165 (184)
T ss_dssp CEECCTTCEEEETT
T ss_pred cEEcCCCCEEEECC
Confidence 56799999999985
No 27
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=46.89 E-value=13 Score=24.11 Aligned_cols=14 Identities=29% Similarity=0.328 Sum_probs=11.8
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|+.||+|.-|.
T Consensus 122 ~~~L~~GD~I~~G~ 135 (154)
T 4ejq_A 122 PSILRSGNRIIMGK 135 (154)
T ss_dssp CEECCTTCEEEETT
T ss_pred ceECCCCCEEEECC
Confidence 45799999999884
No 28
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=46.06 E-value=14 Score=23.33 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=13.5
Q ss_pred ccccCCCCEEEcCCC
Q psy538 70 HMTLEPYDLILTGKA 84 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp 84 (97)
...|++||+|.-|.|
T Consensus 89 ~~~L~~GD~I~lG~~ 103 (138)
T 2pie_A 89 VYSIHQGDYIQLGVP 103 (138)
T ss_dssp CEECCTTCEEEESCC
T ss_pred cEECCCCCEEEECCC
Confidence 578999999999986
No 29
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=44.85 E-value=19 Score=22.57 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=12.7
Q ss_pred cccCCCCEEEcCCCC
Q psy538 71 MTLEPYDLILTGKAG 85 (97)
Q Consensus 71 ~tL~pGDvI~tGTp~ 85 (97)
..|.+||+|--|...
T Consensus 94 ~~L~~GD~I~iG~~~ 108 (131)
T 3hx1_A 94 HIIQTGDEIVMGPQV 108 (131)
T ss_dssp EECCTTCEEECSTTC
T ss_pred EECCCCCEEEECCEE
Confidence 789999999988643
No 30
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=41.63 E-value=24 Score=20.24 Aligned_cols=48 Identities=17% Similarity=-0.009 Sum_probs=29.9
Q ss_pred EEEEECCEEEEeccCCccCCCHHHHHHHHHc---------------------ccccCCCCEEEcCCCCCcc
Q psy538 39 LWLKVNGELRQKSTTGDMLFKTGDLISYISQ---------------------HMTLEPYDLILTGKAGFIL 88 (97)
Q Consensus 39 i~~~vNG~~~q~~~t~~m~~~~~~li~~lS~---------------------~~tL~pGDvI~tGTp~g~~ 88 (97)
|++.|||+.++-..-+ --++.+||+.+.- ...|..||.|--=+|-+-|
T Consensus 1 M~I~vNGe~~e~~~~~--~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 1 MNLTVNGKPSTVDGAE--SLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp CEEEETTEEEECSSCS--CEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCCCCCS
T ss_pred CEEEECCEEEEcCCCC--CCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEeeecCC
Confidence 4688999988732001 1468888888741 2457777777666654433
No 31
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=39.78 E-value=18 Score=22.69 Aligned_cols=14 Identities=7% Similarity=-0.010 Sum_probs=11.8
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|+.||+|--|.
T Consensus 108 ~~~L~~GD~I~~G~ 121 (130)
T 4h87_A 108 YCRVHVGHVVRFGG 121 (130)
T ss_dssp CEECCTTCEEEETT
T ss_pred eeECCCCCEEEECC
Confidence 46799999998884
No 32
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=39.68 E-value=14 Score=24.10 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.5
Q ss_pred ccccCCCCEEEcCCCC
Q psy538 70 HMTLEPYDLILTGKAG 85 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~ 85 (97)
...|+.||+|-.|...
T Consensus 131 ~~~L~~GD~I~~G~s~ 146 (158)
T 3els_A 131 YIELRSGDVLTLSEFE 146 (158)
T ss_dssp CEECCTTEEEESSSCG
T ss_pred eEEcCCCCEEEECCCC
Confidence 5789999999999754
No 33
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=39.22 E-value=12 Score=22.97 Aligned_cols=15 Identities=13% Similarity=0.064 Sum_probs=12.9
Q ss_pred cccccCCCCEEEcCC
Q psy538 69 QHMTLEPYDLILTGK 83 (97)
Q Consensus 69 ~~~tL~pGDvI~tGT 83 (97)
+...|++||+|.-|.
T Consensus 91 ~~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 91 ETTMLQSGMRLQFGT 105 (120)
T ss_dssp SCEEECTTCEEEETT
T ss_pred CCEECCCCCEEEECC
Confidence 456899999999997
No 34
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=38.84 E-value=9.9 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=11.6
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|++||+|-.|.
T Consensus 81 ~~~L~~Gd~i~~G~ 94 (106)
T 3gqs_A 81 QSTLSANQVVALGT 94 (106)
T ss_dssp EEECCTTCCEEETT
T ss_pred CeECCCCCEEEECC
Confidence 35899999998885
No 35
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=38.29 E-value=22 Score=23.14 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=13.1
Q ss_pred ccccCCCCEEEcCCC
Q psy538 70 HMTLEPYDLILTGKA 84 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp 84 (97)
...|.+||+|--|..
T Consensus 121 ~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 121 NQLLSQGDEITVGVG 135 (164)
T ss_dssp EEECCTTCEEEESCS
T ss_pred ceEcCCCCEEEECCC
Confidence 488999999999985
No 36
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=37.87 E-value=18 Score=24.98 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=13.6
Q ss_pred ccccCCCCEEEcCCCC
Q psy538 70 HMTLEPYDLILTGKAG 85 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~ 85 (97)
.+.|++||+|-.|.+.
T Consensus 178 ~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 178 YIELRSGDVLTLSEFE 193 (205)
T ss_dssp CEECCTTCEEESSSSG
T ss_pred eeECCCCCEEEECCCC
Confidence 4679999999999865
No 37
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=37.17 E-value=18 Score=22.37 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.6
Q ss_pred ccccCCCCEEEcCCCC
Q psy538 70 HMTLEPYDLILTGKAG 85 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~ 85 (97)
...|++||+|--|...
T Consensus 93 ~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 93 NQLLSQGDEITVGVGV 108 (127)
T ss_dssp CEECCTTCEEEECTTS
T ss_pred eEEcCCCCEEEECCCc
Confidence 5889999999999754
No 38
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=37.03 E-value=18 Score=21.26 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=12.0
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|++||+|.-|.
T Consensus 76 ~~~L~~gd~i~iG~ 89 (100)
T 3po8_A 76 EWQLADGDVIRLGH 89 (100)
T ss_dssp EEECCTTCEEEETT
T ss_pred eEECCCCCEEEECC
Confidence 36899999998886
No 39
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=35.03 E-value=19 Score=23.65 Aligned_cols=13 Identities=31% Similarity=0.322 Sum_probs=11.3
Q ss_pred cccCCCCEEEcCC
Q psy538 71 MTLEPYDLILTGK 83 (97)
Q Consensus 71 ~tL~pGDvI~tGT 83 (97)
..|++||+|-.|.
T Consensus 139 ~~L~~GD~I~lG~ 151 (157)
T 3oun_A 139 WQLADGDVIRLGH 151 (157)
T ss_dssp EECCTTCEEEETT
T ss_pred EECCCCCEEEECC
Confidence 7899999998875
No 40
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=31.50 E-value=16 Score=23.32 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=11.2
Q ss_pred cccCCCCEEEcCCC
Q psy538 71 MTLEPYDLILTGKA 84 (97)
Q Consensus 71 ~tL~pGDvI~tGTp 84 (97)
..|+|||+|+-.+.
T Consensus 66 ~~l~pGDLvFf~~~ 79 (135)
T 2k1g_A 66 SNLRTGDLVLFRAG 79 (135)
T ss_dssp GGCCTTEEEEEEET
T ss_pred HHccCCcEEEECCC
Confidence 56899999997653
No 41
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=31.26 E-value=16 Score=23.24 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=13.5
Q ss_pred ccccCCCCEEEcCCC
Q psy538 70 HMTLEPYDLILTGKA 84 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp 84 (97)
...|++||+|--|.+
T Consensus 97 ~~~L~~GD~I~iG~~ 111 (145)
T 2csw_A 97 VYSIHQGDYIQLGVP 111 (145)
T ss_dssp CEECCSSCCEEESCC
T ss_pred cEECCCCCEEEECCC
Confidence 578999999999986
No 42
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=30.22 E-value=21 Score=20.20 Aligned_cols=12 Identities=17% Similarity=0.315 Sum_probs=9.7
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|..
T Consensus 34 ~aGl~~GD~I~~ 45 (87)
T 2i6v_A 34 SIGLQDGDMAVA 45 (87)
T ss_dssp HTTCCTTCEEEE
T ss_pred HCCCCCCCEEEE
Confidence 447999999974
No 43
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=29.27 E-value=22 Score=19.98 Aligned_cols=11 Identities=27% Similarity=0.274 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 44 aGl~~GD~I~~ 54 (90)
T 2eaq_A 44 SQLQVDDEIIA 54 (90)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 46999999975
No 44
>4gjz_A Lysine-specific demethylase 8; JMJC, beta barrel, Fe(II) and 2-oxoglutarate binding, oxidor; HET: AKG BME; 1.05A {Homo sapiens} PDB: 4gjy_A* 4aap_A* 3uyj_A*
Probab=29.24 E-value=18 Score=23.71 Aligned_cols=12 Identities=17% Similarity=0.440 Sum_probs=10.1
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
..+|+|||+|+-
T Consensus 202 ~~~l~pGD~Lyi 213 (235)
T 4gjz_A 202 SCILSPGEILFI 213 (235)
T ss_dssp EEEECTTCEEEE
T ss_pred EEEECCCCEEEe
Confidence 468999999975
No 45
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=28.94 E-value=23 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.297 Sum_probs=11.5
Q ss_pred cccCCCCEEEcCCC
Q psy538 71 MTLEPYDLILTGKA 84 (97)
Q Consensus 71 ~tL~pGDvI~tGTp 84 (97)
..|+|||+|+-++.
T Consensus 88 ~~~~pGDlvff~~~ 101 (142)
T 3gt2_A 88 QQARKGDLIFYGPE 101 (142)
T ss_dssp GGCCTTCEEEESGG
T ss_pred hhCCCCCEEEeCCC
Confidence 46899999998763
No 46
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=28.56 E-value=13 Score=20.31 Aligned_cols=14 Identities=0% Similarity=-0.261 Sum_probs=1.2
Q ss_pred ccCCCCEEEcCCCC
Q psy538 72 TLEPYDLILTGKAG 85 (97)
Q Consensus 72 tL~pGDvI~tGTp~ 85 (97)
.+.|||+|+...|.
T Consensus 3 ~~~~G~~il~~~~~ 16 (64)
T 2odd_A 3 LYFQGENLYFQGDS 16 (64)
T ss_dssp ------------CC
T ss_pred cCCCCCEEeeCCCC
Confidence 57899999998874
No 47
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.35 E-value=35 Score=20.58 Aligned_cols=23 Identities=17% Similarity=0.121 Sum_probs=19.0
Q ss_pred ccccCCCCEEEcCCCCCcccccC
Q psy538 70 HMTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
-+...|+++...|-|.|+..-+|
T Consensus 36 k~l~~P~~l~V~GLPeGi~fr~P 58 (90)
T 2d99_A 36 RLLREPGLLAVQGLPEGLAFRRP 58 (90)
T ss_dssp HHHHCTTTEEEESCCSSCCSCCT
T ss_pred HHhcCCccEEeecCCCCCccCCc
Confidence 46789999999999999975444
No 48
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=28.32 E-value=25 Score=20.59 Aligned_cols=12 Identities=8% Similarity=0.249 Sum_probs=10.2
Q ss_pred HcccccCCCCEE
Q psy538 68 SQHMTLEPYDLI 79 (97)
Q Consensus 68 S~~~tL~pGDvI 79 (97)
+++..+++||||
T Consensus 46 ar~~G~k~GdVv 57 (77)
T 1eik_A 46 AKAIGAKRGDIV 57 (77)
T ss_dssp HHGGGCCTTCEE
T ss_pred hHHhCCCCCCEE
Confidence 468899999998
No 49
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=28.27 E-value=12 Score=22.80 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.2
Q ss_pred ccccCCCCEEEcCCCC
Q psy538 70 HMTLEPYDLILTGKAG 85 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~ 85 (97)
...|++||+|.-|...
T Consensus 90 ~~~L~~gd~i~lG~~~ 105 (118)
T 1uht_A 90 SVNLGDGDVIKLGEYT 105 (118)
T ss_dssp EEECCTTEEEEETTTE
T ss_pred eEEcCCCCEEEECCeE
Confidence 5789999999998753
No 50
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=27.87 E-value=22 Score=22.40 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=11.3
Q ss_pred cccCCCCEEEcCCC
Q psy538 71 MTLEPYDLILTGKA 84 (97)
Q Consensus 71 ~tL~pGDvI~tGTp 84 (97)
..|+|||+|+-.+.
T Consensus 66 ~~l~pGDLvff~~~ 79 (136)
T 2jyx_A 66 SNLRTGDLVLFRAG 79 (136)
T ss_dssp TTCCTTEEEEEECS
T ss_pred HhCCCCCEEEECCC
Confidence 47899999997663
No 51
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=27.78 E-value=22 Score=24.71 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=12.2
Q ss_pred cccCCCCEEEcCCCC
Q psy538 71 MTLEPYDLILTGKAG 85 (97)
Q Consensus 71 ~tL~pGDvI~tGTp~ 85 (97)
..|+|||+|+-++..
T Consensus 159 ~~l~pGDLvff~~~~ 173 (235)
T 2hbw_A 159 DELAPGDLVFFGTPV 173 (235)
T ss_dssp GGCCTTCEEEEECSS
T ss_pred hhCCCCCEEEECCCC
Confidence 458999999998754
No 52
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=27.77 E-value=18 Score=21.43 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=10.0
Q ss_pred HcccccCCCCEE
Q psy538 68 SQHMTLEPYDLI 79 (97)
Q Consensus 68 S~~~tL~pGDvI 79 (97)
+++..+++||||
T Consensus 52 a~~~g~k~GdVv 63 (84)
T 4ayb_H 52 ARSINAKPGDII 63 (84)
T ss_dssp HHHHTCCTTCEE
T ss_pred HHhhCCCCCCEE
Confidence 567789999997
No 53
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=27.61 E-value=24 Score=19.67 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=9.3
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 42 aGL~~GD~I~~ 52 (87)
T 2pa1_A 42 ADLRPGDIIVA 52 (87)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 46999999975
No 54
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=27.55 E-value=24 Score=20.75 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|..
T Consensus 53 aGl~~GDvI~~ 63 (105)
T 2i4s_A 53 IGLQDGDMAVA 63 (105)
T ss_dssp HTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 47999999974
No 55
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=27.22 E-value=25 Score=19.81 Aligned_cols=11 Identities=27% Similarity=0.123 Sum_probs=9.1
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 43 aGl~~GD~I~~ 53 (91)
T 2pkt_A 43 ANLCIGDVITA 53 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 45999999975
No 56
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=27.17 E-value=25 Score=19.76 Aligned_cols=10 Identities=50% Similarity=0.959 Sum_probs=8.7
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 49 Gl~~GD~I~~ 58 (91)
T 1m5z_A 49 GLKPYDRLLQ 58 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 57
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=26.80 E-value=36 Score=20.47 Aligned_cols=14 Identities=29% Similarity=0.259 Sum_probs=11.9
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|++||+|.-|.
T Consensus 84 ~~~L~~gd~i~iG~ 97 (115)
T 2xt9_B 84 SAVLANGDEVQIGK 97 (115)
T ss_dssp EEEECTTCEEEETT
T ss_pred eEECCCCCEEEECC
Confidence 36899999999886
No 58
>3kw0_A Cysteine peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: LYS; 2.50A {Bacillus cereus}
Probab=26.60 E-value=25 Score=23.96 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=11.4
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|++||||+.-+
T Consensus 37 ~~~l~~GDlif~~~ 50 (214)
T 3kw0_A 37 INVLKTGDIFLCSG 50 (214)
T ss_dssp TTTCCTTCEEEEEE
T ss_pred HhhCCCCCEEEEeC
Confidence 35899999999754
No 59
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=25.37 E-value=28 Score=19.80 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 46 aGL~~GD~I~~ 56 (94)
T 1vb7_A 46 ADLRPGDIIVA 56 (94)
T ss_dssp HTCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 36999999974
No 60
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=25.18 E-value=28 Score=19.86 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=8.9
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 49 aGl~~GD~I~~ 59 (98)
T 2jxo_A 49 SGLRAQDRIVE 59 (98)
T ss_dssp HTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 34999999974
No 61
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=25.18 E-value=29 Score=18.74 Aligned_cols=10 Identities=20% Similarity=0.421 Sum_probs=8.7
Q ss_pred c-cCCCCEEEc
Q psy538 72 T-LEPYDLILT 81 (97)
Q Consensus 72 t-L~pGDvI~t 81 (97)
. |++||+|+.
T Consensus 38 G~l~~GD~I~~ 48 (81)
T 2rcz_A 38 GNIQEGDVVLK 48 (81)
T ss_dssp SSCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999975
No 62
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=25.15 E-value=60 Score=23.78 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=27.0
Q ss_pred eeEEEEECCEEEEeccCCccCCCHHHHHHH--HHcccccCCCCEEEcCC
Q psy538 37 VPLWLKVNGELRQKSTTGDMLFKTGDLISY--ISQHMTLEPYDLILTGK 83 (97)
Q Consensus 37 ~~i~~~vNG~~~q~~~t~~m~~~~~~li~~--lS~~~tL~pGDvI~tGT 83 (97)
-.+.+..+|+.. ..++.+++.. ++....|++||+|.--.
T Consensus 191 ~~V~l~R~g~~~--------~idl~~ll~~g~~~~~~~L~~GD~I~Vp~ 231 (359)
T 2j58_A 191 RNVVLTHNGKDT--------KISLYALMQKGDLTQNHLLYHGDILFIPS 231 (359)
T ss_dssp TCEEEEETTEEE--------EECHHHHHTTCBGGGCCBCCTTCEEEECB
T ss_pred ceEEEEECCeEE--------EEEHHHHhhcCCcccceeccCCCeEEEee
Confidence 356667788753 3456666543 36779999999998754
No 63
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=25.13 E-value=29 Score=19.44 Aligned_cols=9 Identities=22% Similarity=0.364 Sum_probs=8.0
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 46 L~~GD~I~~ 54 (90)
T 2q9v_A 46 LRSGDELIS 54 (90)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 64
>2dn4_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.08 E-value=1.2e+02 Score=18.57 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=19.7
Q ss_pred ccccCCCCEEEcCCCCCcccccCCCc
Q psy538 70 HMTLEPYDLILTGKAGFILMFQQSPH 95 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~g~~~~~~g~~ 95 (97)
-+...|+++..+|-|.|+. +|.+..
T Consensus 36 k~~~~P~~v~V~GLP~gi~-FR~P~~ 60 (99)
T 2dn4_A 36 LFQSHVEDLYVEGLPEGIP-FRRPST 60 (99)
T ss_dssp HHHHTTTTEEEESCCTTCC-SSCTTT
T ss_pred HHhcCcceEEeecCCCCcc-ccCCCc
Confidence 4677999999999999987 454443
No 65
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=24.92 E-value=29 Score=19.56 Aligned_cols=11 Identities=36% Similarity=0.474 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 43 aGl~~GD~I~~ 53 (91)
T 2vsp_A 43 AGLEDEDVIIE 53 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 45999999975
No 66
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=24.76 E-value=26 Score=20.57 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=10.6
Q ss_pred HcccccCCCCEEE
Q psy538 68 SQHMTLEPYDLIL 80 (97)
Q Consensus 68 S~~~tL~pGDvI~ 80 (97)
+++..+++||||=
T Consensus 44 ar~~G~k~GdVvk 56 (78)
T 1hmj_A 44 IQEIGAKEGDVVR 56 (78)
T ss_pred hHHhCCCCCCEEE
Confidence 4678999999983
No 67
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=24.76 E-value=28 Score=20.08 Aligned_cols=10 Identities=30% Similarity=0.388 Sum_probs=8.6
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 17 GL~~GD~I~~ 26 (91)
T 2kjp_A 17 KIEVGDKIIS 26 (91)
T ss_dssp CCCSSCEEEE
T ss_pred cCCCCCEEEE
Confidence 6999999975
No 68
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=24.54 E-value=30 Score=19.36 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 43 aGl~~GD~I~~ 53 (89)
T 2q3g_A 43 AGVAVGDWVLS 53 (89)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 35999999974
No 69
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=24.37 E-value=30 Score=19.29 Aligned_cols=11 Identities=36% Similarity=0.374 Sum_probs=9.3
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 41 aGl~~GD~I~~ 51 (88)
T 3bpu_A 41 RGLKEGDLIVE 51 (88)
T ss_dssp TTCCTTCEEEE
T ss_pred hCCCCCCEEEE
Confidence 47999999974
No 70
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=24.27 E-value=38 Score=20.77 Aligned_cols=15 Identities=20% Similarity=0.151 Sum_probs=12.6
Q ss_pred cccccCCCCEEEcCC
Q psy538 69 QHMTLEPYDLILTGK 83 (97)
Q Consensus 69 ~~~tL~pGDvI~tGT 83 (97)
+...|++||+|.-|.
T Consensus 86 ~~~~L~~Gd~i~iG~ 100 (128)
T 1r21_A 86 EPVRLKHGDVITIID 100 (128)
T ss_dssp SCEECCTTEEEECSS
T ss_pred CcEEcCCCCEEEECC
Confidence 357899999999985
No 71
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.18 E-value=30 Score=19.64 Aligned_cols=11 Identities=45% Similarity=0.492 Sum_probs=9.1
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 48 aGl~~GD~I~~ 58 (94)
T 2eeg_A 48 AALCPGDLIQA 58 (94)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 36999999974
No 72
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=24.16 E-value=30 Score=19.82 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=8.0
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 50 L~~GD~I~~ 58 (96)
T 2qkv_A 50 LQRGDIITK 58 (96)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 73
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=24.15 E-value=31 Score=19.58 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=8.8
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 51 gL~~GD~I~~ 60 (95)
T 1mfg_A 51 LLQPGDKIIQ 60 (95)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999974
No 74
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=24.08 E-value=31 Score=19.57 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=8.1
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 48 L~~GD~I~~ 56 (95)
T 2vwr_A 48 LSSNDRVLA 56 (95)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 75
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=24.06 E-value=31 Score=19.05 Aligned_cols=10 Identities=30% Similarity=0.507 Sum_probs=8.6
Q ss_pred c-cCCCCEEEc
Q psy538 72 T-LEPYDLILT 81 (97)
Q Consensus 72 t-L~pGDvI~t 81 (97)
. |++||+|+.
T Consensus 42 G~l~~GD~I~~ 52 (85)
T 2i04_A 42 GKMETGDVIVS 52 (85)
T ss_dssp CCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999974
No 76
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=24.00 E-value=31 Score=19.19 Aligned_cols=10 Identities=20% Similarity=0.375 Sum_probs=8.7
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 44 Gl~~GD~I~~ 53 (88)
T 2uzc_A 44 NVRIGDVVLS 53 (88)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 77
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=23.95 E-value=31 Score=19.54 Aligned_cols=10 Identities=20% Similarity=0.155 Sum_probs=8.4
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 51 Gl~~GD~I~~ 60 (97)
T 2w4f_A 51 GVRVGDKLLE 60 (97)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 4999999974
No 78
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=23.78 E-value=35 Score=18.76 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 39 aGl~~GD~I~~ 49 (83)
T 2kv8_A 39 VGLRAGDQILA 49 (83)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 46999999975
No 79
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=23.77 E-value=31 Score=19.61 Aligned_cols=9 Identities=44% Similarity=0.423 Sum_probs=8.1
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 56 L~~GD~I~~ 64 (98)
T 1ihj_A 56 LKVGDRILS 64 (98)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 80
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=23.55 E-value=31 Score=19.92 Aligned_cols=13 Identities=31% Similarity=0.133 Sum_probs=10.6
Q ss_pred cccccCCCCEEEc
Q psy538 69 QHMTLEPYDLILT 81 (97)
Q Consensus 69 ~~~tL~pGDvI~t 81 (97)
....|++||+|+.
T Consensus 44 ~~aGL~~GD~I~~ 56 (96)
T 1ujv_A 44 GCPGLCEGDLIVE 56 (96)
T ss_dssp GSTTCCSSCEEEE
T ss_pred ccCCCCCCCEEEE
Confidence 4578999999973
No 81
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=23.52 E-value=26 Score=19.35 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 41 aGl~~GD~I~~ 51 (85)
T 1rgw_A 41 SQLSQGDLVVA 51 (85)
T ss_dssp SSCCCCSBEEE
T ss_pred cCCCCCCEEEE
Confidence 46999999975
No 82
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=23.37 E-value=32 Score=19.25 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=8.9
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 44 aGl~~GD~I~~ 54 (90)
T 2he4_A 44 SGLRAQDRLIE 54 (90)
T ss_dssp HTCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 34999999975
No 83
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=23.24 E-value=33 Score=19.27 Aligned_cols=9 Identities=44% Similarity=0.309 Sum_probs=8.1
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 48 L~~GD~I~~ 56 (92)
T 2qg1_A 48 LMQGDQILM 56 (92)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 84
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=23.13 E-value=33 Score=19.48 Aligned_cols=9 Identities=33% Similarity=0.682 Sum_probs=8.1
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 51 l~~GD~I~~ 59 (97)
T 2jil_A 51 IKPGDRLLS 59 (97)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 85
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=23.07 E-value=34 Score=19.71 Aligned_cols=10 Identities=40% Similarity=0.321 Sum_probs=8.8
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 21 GL~~GD~Il~ 30 (94)
T 2kl1_A 21 RLEAGDRIAA 30 (94)
T ss_dssp TBCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 6999999985
No 86
>3mvn_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamayl-M diaminopimelate ligase; structural genomics, MCSG, PSI-2; 1.90A {Haemophilus ducreyi}
Probab=22.97 E-value=58 Score=20.65 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=18.3
Q ss_pred CCCHHHHHHHHHcccccCCCCEEEcC
Q psy538 57 LFKTGDLISYISQHMTLEPYDLILTG 82 (97)
Q Consensus 57 ~~~~~~li~~lS~~~tL~pGDvI~tG 82 (97)
+-+.+++++++.+. +++||+|++-
T Consensus 122 ~~d~~eai~~~~~~--~~~gDvVLv~ 145 (163)
T 3mvn_A 122 ADDVDELVMRIVQQ--AKPNDHILIM 145 (163)
T ss_dssp ESSHHHHHHHHHHH--CCTTCEEEEE
T ss_pred ECCHHHHHHHHHHh--CCCCCEEEEE
Confidence 45788899888653 6899998863
No 87
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=22.97 E-value=28 Score=22.49 Aligned_cols=12 Identities=25% Similarity=0.144 Sum_probs=10.5
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|--
T Consensus 97 ~~~L~~GD~I~l 108 (158)
T 1dmz_A 97 KFLLQDGDEIKI 108 (158)
T ss_dssp EEECCSSCCEES
T ss_pred eEEcCCCCEEEE
Confidence 478999999998
No 88
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=22.92 E-value=23 Score=22.25 Aligned_cols=17 Identities=6% Similarity=0.012 Sum_probs=13.6
Q ss_pred cccccCCCCEEEcCCCC
Q psy538 69 QHMTLEPYDLILTGKAG 85 (97)
Q Consensus 69 ~~~tL~pGDvI~tGTp~ 85 (97)
+...|++||+|--|...
T Consensus 113 ~~~~L~~gd~i~~G~~~ 129 (140)
T 2jpe_A 113 KPQQIPIDSTVSFGAST 129 (140)
T ss_dssp SCCEECTTCCBBCSSCC
T ss_pred ccEECCCCCEEEECCce
Confidence 35789999999988754
No 89
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=22.90 E-value=34 Score=19.12 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=9.2
Q ss_pred cc-cCCCCEEEc
Q psy538 71 MT-LEPYDLILT 81 (97)
Q Consensus 71 ~t-L~pGDvI~t 81 (97)
.. |++||+|+.
T Consensus 39 aG~l~~GD~I~~ 50 (92)
T 3cyy_A 39 DGNIQEGDVVLK 50 (92)
T ss_dssp SCCCCTTCEEEE
T ss_pred cCCCCCCCEEEE
Confidence 35 999999985
No 90
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=22.70 E-value=34 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.265 Sum_probs=8.6
Q ss_pred c-cCCCCEEEc
Q psy538 72 T-LEPYDLILT 81 (97)
Q Consensus 72 t-L~pGDvI~t 81 (97)
. |++||+|+.
T Consensus 50 G~l~~GD~I~~ 60 (94)
T 2fe5_A 50 GRLQIGDRLLA 60 (94)
T ss_dssp CCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999974
No 91
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=22.65 E-value=34 Score=19.14 Aligned_cols=11 Identities=27% Similarity=0.151 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 20 aGl~~GD~I~~ 30 (91)
T 2zpm_A 20 AGLQAGDRIVX 30 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 47999999974
No 92
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=22.51 E-value=34 Score=19.84 Aligned_cols=10 Identities=40% Similarity=0.401 Sum_probs=8.8
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 23 GL~~GD~I~~ 32 (100)
T 3i18_A 23 VLHAGDLITE 32 (100)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999975
No 93
>1jb3_A Agrin; neuromuscular junction, interaction coiled-DOIL proteins with globular proteins, OB-fold, TIMP, cell adhesion; 1.60A {Gallus gallus} SCOP: b.40.3.2 PDB: 1pxu_A 1jc7_A 3i70_A
Probab=22.50 E-value=12 Score=24.30 Aligned_cols=21 Identities=24% Similarity=0.291 Sum_probs=15.6
Q ss_pred cCCCCEEEcCCCCCcccccCC
Q psy538 73 LEPYDLILTGKAGFILMFQQS 93 (97)
Q Consensus 73 L~pGDvI~tGTp~g~~~~~~g 93 (97)
.+--|||+|||..++-.+.+.
T Consensus 10 ~e~AdVVltgtV~~i~~~~~~ 30 (131)
T 1jb3_A 10 EEEANVVLTGTVEEIMNVDPV 30 (131)
T ss_dssp HHTCSEEEEEEEEEEEEEETT
T ss_pred HHhCCEEEEEEEEeeeccCCC
Confidence 345699999998887665554
No 94
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=22.42 E-value=35 Score=19.25 Aligned_cols=10 Identities=30% Similarity=0.498 Sum_probs=8.7
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 41 Gl~~GD~I~~ 50 (91)
T 2f5y_A 41 GLQQLDTVLQ 50 (91)
T ss_dssp TCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 5999999975
No 95
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=22.35 E-value=35 Score=19.10 Aligned_cols=11 Identities=18% Similarity=0.084 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 43 aGL~~GD~I~~ 53 (91)
T 1g9o_A 43 AGLLAGDRLVE 53 (91)
T ss_dssp TTCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 34999999975
No 96
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=22.15 E-value=35 Score=23.44 Aligned_cols=13 Identities=31% Similarity=0.337 Sum_probs=11.0
Q ss_pred cccCCCCEEEcCC
Q psy538 71 MTLEPYDLILTGK 83 (97)
Q Consensus 71 ~tL~pGDvI~tGT 83 (97)
..|+|||+|+-++
T Consensus 157 ~~lqpGDLVff~~ 169 (214)
T 3pbi_A 157 AEAKRGDLIFYGP 169 (214)
T ss_dssp GGCCTTCEEEESG
T ss_pred hhCCCCCEEEecC
Confidence 4799999999864
No 97
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=22.08 E-value=35 Score=19.36 Aligned_cols=9 Identities=44% Similarity=0.261 Sum_probs=8.1
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 49 l~~GD~I~~ 57 (98)
T 2opg_A 49 LWAGDQILE 57 (98)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 98
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=22.06 E-value=35 Score=19.42 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=9.4
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|+.
T Consensus 52 ~aGL~~GD~I~~ 63 (96)
T 2ego_A 52 LAGLTPGDTIAS 63 (96)
T ss_dssp HTTCCTTCEEEE
T ss_pred HcCCCCCCEEEE
Confidence 345999999974
No 99
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=22.06 E-value=31 Score=19.34 Aligned_cols=10 Identities=40% Similarity=0.265 Sum_probs=8.7
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 48 gl~~GD~I~~ 57 (90)
T 1qav_A 48 ALFVGDAILS 57 (90)
T ss_dssp CCCTTEEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999974
No 100
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=22.02 E-value=36 Score=20.12 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=8.0
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 44 L~~GD~Il~ 52 (106)
T 2la8_A 44 LQRGDIITK 52 (106)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 101
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.97 E-value=35 Score=19.63 Aligned_cols=11 Identities=27% Similarity=-0.040 Sum_probs=8.9
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 52 aGL~~GD~I~~ 62 (100)
T 2eeh_A 52 AGLCVGDKITE 62 (100)
T ss_dssp HTCCSSCEEEE
T ss_pred cCCCCCCEEEE
Confidence 34999999974
No 102
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=21.93 E-value=36 Score=19.55 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=8.2
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 58 l~~GD~I~~ 66 (103)
T 2fcf_A 58 LKPGDRIVE 66 (103)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999985
No 103
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.93 E-value=36 Score=19.66 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=8.8
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 53 GL~~GD~I~~ 62 (100)
T 2edp_A 53 KMRTGDELVN 62 (100)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 7999999974
No 104
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=21.92 E-value=37 Score=19.33 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=8.7
Q ss_pred c-cCCCCEEEc
Q psy538 72 T-LEPYDLILT 81 (97)
Q Consensus 72 t-L~pGDvI~t 81 (97)
. |++||+|+.
T Consensus 47 G~l~~GD~I~~ 57 (97)
T 1n7e_A 47 GAIHIGDRILA 57 (97)
T ss_dssp TCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999975
No 105
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=21.55 E-value=37 Score=19.59 Aligned_cols=10 Identities=40% Similarity=0.581 Sum_probs=8.8
Q ss_pred ccCCCCEEEc
Q psy538 72 TLEPYDLILT 81 (97)
Q Consensus 72 tL~pGDvI~t 81 (97)
.|++||+|+.
T Consensus 59 gL~~GD~I~~ 68 (103)
T 1n7t_A 59 LLQPGDKIIQ 68 (103)
T ss_dssp SCCTTCEEEE
T ss_pred CCCCCCEEEE
Confidence 8999999974
No 106
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.49 E-value=37 Score=19.85 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=8.9
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 62 aGL~~GD~I~~ 72 (110)
T 1x5q_A 62 AGVRVGDKLLE 72 (110)
T ss_dssp HTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 34999999974
No 107
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=21.35 E-value=34 Score=21.78 Aligned_cols=14 Identities=29% Similarity=0.294 Sum_probs=11.8
Q ss_pred ccccCCCCEEEcCC
Q psy538 70 HMTLEPYDLILTGK 83 (97)
Q Consensus 70 ~~tL~pGDvI~tGT 83 (97)
...|++||+|.-|.
T Consensus 119 ~~~L~~GD~I~iG~ 132 (143)
T 2kb3_A 119 AQVMQTGDEIQIGK 132 (143)
T ss_dssp EEECCTTEEEEETT
T ss_pred eEECCCCCEEEECC
Confidence 36899999998885
No 108
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=21.30 E-value=37 Score=19.64 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=8.9
Q ss_pred cc-cCCCCEEEc
Q psy538 71 MT-LEPYDLILT 81 (97)
Q Consensus 71 ~t-L~pGDvI~t 81 (97)
.. |++||+|+.
T Consensus 50 aG~L~~GD~Il~ 61 (103)
T 1uep_A 50 DGRLHPGDELVY 61 (103)
T ss_dssp GTCCCTTCEEEE
T ss_pred CCCCCCCCEEEE
Confidence 44 999999974
No 109
>1o6a_A Putative flagellar motor switch protein FLIN; C- terminal PR fragment, structural genomics, joint center for structural JCSG; 1.85A {Thermotoga maritima} SCOP: b.139.1.1 PDB: 1yab_A
Probab=21.17 E-value=26 Score=20.87 Aligned_cols=15 Identities=13% Similarity=0.084 Sum_probs=11.8
Q ss_pred cccccCCCCEEEcCC
Q psy538 69 QHMTLEPYDLILTGK 83 (97)
Q Consensus 69 ~~~tL~pGDvI~tGT 83 (97)
+...|.+||||-...
T Consensus 36 ell~L~~GdVI~Ld~ 50 (96)
T 1o6a_A 36 RVLEMIHGSIIELDK 50 (96)
T ss_dssp HHHHCCTTCEEEEEE
T ss_pred HHhCCCCCCEEEeCC
Confidence 345799999998775
No 110
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=21.16 E-value=38 Score=18.98 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=8.1
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 52 l~~GD~I~~ 60 (97)
T 2iwn_A 52 IQIGDQIIA 60 (97)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999974
No 111
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=20.88 E-value=34 Score=19.44 Aligned_cols=11 Identities=9% Similarity=0.205 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 46 aGl~~GD~I~~ 56 (96)
T 2v90_A 46 AGMQAGDRLVA 56 (96)
T ss_dssp TTCCTTEEEEE
T ss_pred cCCCCCCEEEE
Confidence 45999999974
No 112
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.80 E-value=39 Score=20.35 Aligned_cols=11 Identities=18% Similarity=0.120 Sum_probs=9.2
Q ss_pred cc-cCCCCEEEc
Q psy538 71 MT-LEPYDLILT 81 (97)
Q Consensus 71 ~t-L~pGDvI~t 81 (97)
.. |++||+|+.
T Consensus 64 aG~l~~GD~I~~ 75 (124)
T 1wh1_A 64 DGRIREGDRIIQ 75 (124)
T ss_dssp TCCCCTTCEEEE
T ss_pred cCCCCCCCEEEE
Confidence 45 999999985
No 113
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=20.68 E-value=39 Score=19.07 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=9.0
Q ss_pred cc-cCCCCEEEc
Q psy538 71 MT-LEPYDLILT 81 (97)
Q Consensus 71 ~t-L~pGDvI~t 81 (97)
.. |++||+|+.
T Consensus 49 aG~l~~GD~I~~ 60 (96)
T 1d5g_A 49 DGRIHKGDRVLA 60 (96)
T ss_dssp TTCCCTTCEEEE
T ss_pred cCCCCCCCEEEE
Confidence 35 999999975
No 114
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.37 E-value=51 Score=20.70 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=18.9
Q ss_pred ccccCCCCEEEcCCCCCcccccC
Q psy538 70 HMTLEPYDLILTGKAGFILMFQQ 92 (97)
Q Consensus 70 ~~tL~pGDvI~tGTp~g~~~~~~ 92 (97)
-+...|++|+.+|-|.|+..-+|
T Consensus 50 k~~~~P~~v~V~GLPeGi~fr~P 72 (114)
T 2eje_A 50 KITINPGCVVVDGMPPGVSFKAP 72 (114)
T ss_dssp HHHHCSSSEEEECCCTTCCCCCT
T ss_pred HHhcCCccEEeecCCCCCccCCC
Confidence 46789999999999999974443
No 115
>2k4v_A Uncharacterized protein PA1076; structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa}
Probab=20.35 E-value=1.5e+02 Score=18.77 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=30.7
Q ss_pred eeEEEEECCEEEEecc--CCccCCCHHHHHHHHHcccccCC
Q psy538 37 VPLWLKVNGELRQKST--TGDMLFKTGDLISYISQHMTLEP 75 (97)
Q Consensus 37 ~~i~~~vNG~~~q~~~--t~~m~~~~~~li~~lS~~~tL~p 75 (97)
.++.-+|||+.+.+-- ..++.|+++..+..+++...|.+
T Consensus 43 f~m~Gei~gk~f~E~F~L~rD~AfnFa~~~tR~a~~hGlp~ 83 (125)
T 2k4v_A 43 FDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHP 83 (125)
T ss_dssp EEEEEEETTEEEEEEEEEETTTGGGHHHHHHHHHHHTTCCG
T ss_pred EEEEEEECCEeccceeeccHHHHHHHHHHHHHHHHHcCCCC
Confidence 5566688999887653 58999999999999997666654
No 116
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=20.34 E-value=87 Score=18.24 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.7
Q ss_pred CceeEEEEECCE-EEEeccCCccCCCHHHHHHHHHc
Q psy538 35 DDVPLWLKVNGE-LRQKSTTGDMLFKTGDLISYISQ 69 (97)
Q Consensus 35 ~~~~i~~~vNG~-~~q~~~t~~m~~~~~~li~~lS~ 69 (97)
...++++.++|. ++.++...+|+-.+..++.-|.+
T Consensus 48 ~~vei~i~~~g~~l~a~~~~~d~y~AiD~a~dkler 83 (95)
T 4fyl_A 48 QIAEATLHVNQAEIHAHADDENMYAAIDSLVDKLVR 83 (95)
T ss_dssp EEEEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCcEEEEEEecCCHHHHHHHHHHHHHH
Confidence 356777888875 57788889999999988888765
No 117
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=20.24 E-value=41 Score=19.26 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=8.6
Q ss_pred c-cCCCCEEEc
Q psy538 72 T-LEPYDLILT 81 (97)
Q Consensus 72 t-L~pGDvI~t 81 (97)
. |++||+|+.
T Consensus 54 G~L~~GD~I~~ 64 (101)
T 2jik_A 54 GRLQEGDKILS 64 (101)
T ss_dssp CCCCTTCEEEE
T ss_pred CCCCCCCEEEE
Confidence 5 999999975
No 118
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.21 E-value=45 Score=19.13 Aligned_cols=12 Identities=25% Similarity=0.404 Sum_probs=9.6
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|+.
T Consensus 45 ~aGl~~GD~I~~ 56 (102)
T 2d90_A 45 AAGLKNNDLVVA 56 (102)
T ss_dssp TTTCCTTCEEEE
T ss_pred HcCCCCCCEEEE
Confidence 456999999975
No 119
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=20.17 E-value=41 Score=19.40 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=9.6
Q ss_pred ccccCCCCEEEc
Q psy538 70 HMTLEPYDLILT 81 (97)
Q Consensus 70 ~~tL~pGDvI~t 81 (97)
...|++||+|..
T Consensus 17 ~aGl~~GD~I~~ 28 (95)
T 3id1_A 17 EAQIAPGTELKA 28 (95)
T ss_dssp HTTCCTTCEEEE
T ss_pred HcCCCCCCEEEE
Confidence 457999999974
No 120
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=20.11 E-value=36 Score=18.86 Aligned_cols=11 Identities=36% Similarity=0.187 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
-.|++||+|+.
T Consensus 45 agl~~GD~I~~ 55 (87)
T 4e34_A 45 GGLHVGDAILA 55 (87)
T ss_dssp SCCCTTEEEEE
T ss_pred CCCCCCCEEEE
Confidence 38999999975
No 121
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=20.09 E-value=41 Score=19.30 Aligned_cols=11 Identities=27% Similarity=0.205 Sum_probs=9.0
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 61 aGl~~GD~I~~ 71 (104)
T 3sfj_A 61 AGLQIGDKIMQ 71 (104)
T ss_dssp HTCCTTCEEEE
T ss_pred cCCCCCCEEEE
Confidence 35999999975
No 122
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.05 E-value=41 Score=19.48 Aligned_cols=9 Identities=33% Similarity=0.408 Sum_probs=8.0
Q ss_pred cCCCCEEEc
Q psy538 73 LEPYDLILT 81 (97)
Q Consensus 73 L~pGDvI~t 81 (97)
|++||+|+.
T Consensus 57 L~~GD~I~~ 65 (105)
T 1wha_A 57 LQVGDRVLS 65 (105)
T ss_dssp CCTTCEEEE
T ss_pred CCCCCEEEE
Confidence 999999975
No 123
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.02 E-value=33 Score=19.70 Aligned_cols=11 Identities=45% Similarity=0.347 Sum_probs=9.2
Q ss_pred cccCCCCEEEc
Q psy538 71 MTLEPYDLILT 81 (97)
Q Consensus 71 ~tL~pGDvI~t 81 (97)
..|++||+|+.
T Consensus 46 agL~~GD~Il~ 56 (96)
T 2edv_A 46 GKLFPGDQILQ 56 (96)
T ss_dssp TTSCTTCBEEE
T ss_pred hCCCCCCEEEE
Confidence 67999999974
Done!