RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy538
(97 letters)
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 217
Score = 90.9 bits (225), Expect = 7e-25
Identities = 42/81 (51%), Positives = 57/81 (70%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
++ GLPWT+ K F +CPVS F+P+ +I DP + LWLKVNGELRQ+ T M+F
Sbjct: 104 ECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIP 163
Query: 62 DLISYISQHMTLEPYDLILTG 82
+ISY+S+ +TLE D+ILTG
Sbjct: 164 YIISYVSKIITLEEGDIILTG 184
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 257
Score = 66.8 bits (162), Expect = 2e-15
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKD-----PDDVPLWLKVNGELRQKSTTGDM 56
A++ GLPWT+ KGFDT P+S + + D + VNG+LRQ T M
Sbjct: 129 EAKKKGLPWTISKGFDTFMPISAIVSREKFSSYKSNLQDIFRVKCSVNGQLRQDGGTNLM 188
Query: 57 LFKTGDLISYISQHMTLEPYDLILTG 82
L ++ +IS ++LEP D+ILTG
Sbjct: 189 LHPLHKILQHISTMISLEPGDIILTG 214
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli
[TaxId: 562]}
Length = 221
Score = 60.2 bits (145), Expect = 4e-13
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 1 KHAREHGLPWTVGKGFDTACPVSDFI-PEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFK 59
++ G PW K FD +CP+S FI DP + L L VNGE RQ+ TT DM+ K
Sbjct: 110 GKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQGTTADMIHK 169
Query: 60 TGDLISYISQHMTLEPYDLILTG 82
LI+Y+S+ TL+ D++LTG
Sbjct: 170 IVPLIAYMSKFFTLKAGDVVLTG 192
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 216
Score = 57.9 bits (139), Expect = 2e-12
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 10 WTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQ 69
V +S +P+ I DP ++ L VNGELRQ+ TT D++F LI+Y+S+
Sbjct: 109 LRVKSRDGLTPMLSTIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSE 168
Query: 70 HMTLEPYDLILTG 82
MTL P D+I TG
Sbjct: 169 FMTLNPGDMIATG 181
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 298
Score = 52.4 bits (125), Expect = 4e-10
Identities = 13/109 (11%), Positives = 27/109 (24%), Gaps = 30/109 (27%)
Query: 4 REHGLPWTVGKGFDTACPVSDFIP-----------------------EHEIKDPDDVPLW 40
+ +P G +S ++ H D+ L
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182
Query: 41 L------KVNGELRQKSTTGDMLFKTGDLISYI-SQHMTLEPYDLILTG 82
+ +S M + +++ L P DL+ +G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASG 231
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD
{Escherichia coli [TaxId: 562]}
Length = 261
Score = 43.8 bits (102), Expect = 4e-07
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 5/82 (6%)
Query: 6 HGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLIS 65
+ + D + + + N E + L +
Sbjct: 150 QFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAV 209
Query: 66 YISQHM-----TLEPYDLILTG 82
++++ M L D+ILTG
Sbjct: 210 WLARKMASLGEPLRTGDIILTG 231
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation
bifunctional isomerase/decarboxylase HpcE {Escherichia
coli [TaxId: 562]}
Length = 213
Score = 40.7 bits (94), Expect = 4e-06
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 2 HAREHGLPWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTG 61
P K D CP+ + + + D++ ++ ++NG T D+
Sbjct: 98 PEESFYRPAIKAKCRDGFCPIGETVALS---NVDNLTIYTEINGRPADHWNTADLQRNAA 154
Query: 62 DLISYISQHMTLEPYDLILTG 82
L+S +S+ TL P D IL G
Sbjct: 155 QLLSALSEFATLNPGDAILLG 175
>d1s48a_ e.8.1.4 (A:) Viral RNA polymerase {Bovine viral diarrhea
virus [TaxId: 11099]}
Length = 588
Score = 28.7 bits (64), Expect = 0.094
Identities = 11/59 (18%), Positives = 18/59 (30%)
Query: 13 GKGFDTACPVSDFIPEHEIKDPDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHM 71
K +DT D EI+ W K + T ++ G++ Q
Sbjct: 255 TKAWDTQVTSKDLQLIGEIQKYYYKKEWHKFIDTITDHMTEVPVITADGEVYIRNGQRG 313
>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding
protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 529
Score = 23.4 bits (50), Expect = 6.4
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 1 KHAREHGLPWTVGKGFDTACPVSDFIPEHEIKD--PDDVP---LWLKVNGELRQKSTTGD 55
+P + + + + I EH + + PD+ K ELR+ + D
Sbjct: 136 DVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELREHFQSYD 195
Query: 56 MLFKTGDLISYISQHMTLEPYDLIL 80
+ S+ P+ +I+
Sbjct: 196 LDHMEKKDHSHT-------PWIVII 213
>d1j20a2 d.210.1.1 (A:171-395) Argininosuccinate synthetase,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 225
Score = 23.0 bits (49), Expect = 7.3
Identities = 7/66 (10%), Positives = 18/66 (27%), Gaps = 2/66 (3%)
Query: 34 PDDVPLWLKVNGELRQKSTTGDMLFKTGDLISYISQHMTLEPYDLILTGKAG--FILMFQ 91
P + + E ++ F GD ++ + ++ L G +
Sbjct: 26 PKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQRLNEIGGRHGVGRVD 85
Query: 92 QSPHSV 97
+
Sbjct: 86 IVENRF 91
>d2ixma1 a.268.1.1 (A:23-322) Serine/threonine-protein phosphatase
2A regulatory subunit B', PTPA {Human (Homo sapiens)
[TaxId: 9606]}
Length = 300
Score = 23.2 bits (50), Expect = 7.7
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 26 IPEHEIKDPDDVPLWLK 42
IP+ EI D+ W +
Sbjct: 3 IPKKEIHTVPDMGKWKR 19
>d1mbma_ b.47.1.3 (A:) NSP4 proteinase {Equine arteritis virus, EAV
[TaxId: 11047]}
Length = 198
Score = 23.0 bits (49), Expect = 8.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 21 PVSDFIPEHEIKDPDDVP 38
+ IP++ I D D VP
Sbjct: 167 SIPKDIPDNIIADVDAVP 184
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 245
Score = 23.2 bits (48), Expect = 8.6
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 9 PWTVGKGFDTACPVSDFIPEHEIKDPDDVPLWLK 42
P T+ K P+ + D+P ++
Sbjct: 209 PLTMFKALRMREETYAEAPDFVVPALGDLPRLVR 242
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.439
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,575
Number of extensions: 15698
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 20
Length of query: 97
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 38
Effective length of database: 1,597,526
Effective search space: 60705988
Effective search space used: 60705988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)