BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5380
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZSX|A Chain A, Crystal Structure Of Human Potassium Channel Kv
Beta-Subunit (Kcnab2)
Length = 347
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 160 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPEL 219
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 220 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 253
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 325 QVLPKLSSSIIHEIDSILGNKP 346
>pdb|3EB3|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (W121a) In
Complex With Cortisone
Length = 327
Score = 123 bits (309), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 139 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 198
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 232
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 304 QVLPKLSSSIVHEIDSILGNKP 325
>pdb|2A79|A Chain A, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
pdb|2R9R|A Chain A, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|G Chain G, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|3LNM|A Chain A, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|C Chain C, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 333
Score = 123 bits (309), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 139 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 198
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 232
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 304 QVLPKLSSSIVHEIDSILGNKP 325
>pdb|3LUT|A Chain A, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 367
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 173 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 232
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 233 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 266
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 338 QVLPKLSSSIVHEIDSILGNKP 359
>pdb|1EXB|A Chain A, Structure Of The Cytoplasmic Beta Subunit-T1 Assembly Of
Voltage-Dependent K Channels
Length = 332
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 138 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 197
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 198 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 231
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 303 QVLPKLSSSIVHEIDSILGNKP 324
>pdb|3EAU|A Chain A, Voltage-Dependent K+ Channel Beta Subunit In Complex With
Cortisone
Length = 327
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 139 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 198
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 232
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 304 QVLPKLSSSIVHEIDSILGNKP 325
>pdb|1QRQ|A Chain A, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|B Chain B, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|C Chain C, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
pdb|1QRQ|D Chain D, Structure Of A Voltage-Dependent K+ Channel Beta Subunit
Length = 325
Score = 123 bits (308), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 138 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 197
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 198 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 231
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 303 QVLPKLSSSIVHEIDSILGNKP 324
>pdb|3EB4|A Chain A, Voltage-Dependent K+ Channel Beta Subunit (I211r) In
Complex With Cortisone
Length = 327
Score = 120 bits (301), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN P EQ EYHMF R+K E+ +PEL
Sbjct: 139 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPRCEQAEYHMFQREKVEVQLPEL 198
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
++KIGVG M WSP++ ++SGK + +P Y ++S
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGKYDS-GIPPYSRAS 232
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 8/22 (36%), Positives = 19/22 (86%)
Query: 96 KLVPKLNAAVMGEVERVLDNKP 117
+++PKL+++++ E++ +L NKP
Sbjct: 304 QVLPKLSSSIVHEIDSILGNKP 325
>pdb|3UYI|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 9/86 (10%)
Query: 5 INQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMPELYNK 63
+ +G I Y G S SP I A++ P+ Q EY ++ RD + +P L +
Sbjct: 146 VEEGKIKYVGLSEASPDTIRRAHA-------VHPVTALQIEYSLWTRDIEDEIVP-LCRQ 197
Query: 64 IGVGMMAWSPISMALISGKIEEFTVP 89
+G+G++ +SPI L +GK + ++P
Sbjct: 198 LGIGIVPYSPIGRGLFAGKAIKESLP 223
>pdb|3N6Q|A Chain A, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|B Chain B, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|C Chain C, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|D Chain D, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|E Chain E, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|F Chain F, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|G Chain G, Crystal Structure Of Yghz From E. Coli
pdb|3N6Q|H Chain H, Crystal Structure Of Yghz From E. Coli
pdb|4AST|A Chain A, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|B Chain B, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|C Chain C, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|D Chain D, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|E Chain E, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|F Chain F, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|G Chain G, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
pdb|4AST|H Chain H, The Apo Structure Of A Bacterial Aldo-Keto Reductase
Akr14a1
Length = 346
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCR--DKAELYMP 58
+ HA+ G +Y G S +SP + R++ +I Q Y++ R DK+ L +
Sbjct: 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPL-LIHQPSYNLLNRWVDKSGL-LD 210
Query: 59 ELYNKIGVGMMAWSPISMALISGK 82
L N GVG +A++P++ L++GK
Sbjct: 211 TLQNN-GVGCIAFTPLAQGLLTGK 233
>pdb|4AUB|A Chain A, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|B Chain B, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|C Chain C, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|D Chain D, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|E Chain E, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|F Chain F, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|G Chain G, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
pdb|4AUB|H Chain H, The Complex Structure Of The Bacterial Aldo-Keto Reductase
Akr14a1 With Nadp And Citrate
Length = 366
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCR--DKAELYMP 58
+ HA+ G +Y G S +SP + R++ +I Q Y++ R DK+ L +
Sbjct: 173 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIPL-LIHQPSYNLLNRWVDKSGL-LD 230
Query: 59 ELYNKIGVGMMAWSPISMALISGK 82
L N GVG +A++P++ L++GK
Sbjct: 231 TLQNN-GVGCIAFTPLAQGLLTGK 253
>pdb|3V0T|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMPE 59
+ + +G I Y G S SP I A++ P+ Q EY ++ RD + +P
Sbjct: 141 LKKLVEEGKIKYVGLSEASPDTIRRAHA-------VHPVTALQIEYSLWTRDIEDEIVP- 192
Query: 60 LYNKIGVGMMAWSPISMALISGKIEEFTVP 89
L ++G+G++ +SPI L GK + ++P
Sbjct: 193 LCRQLGIGIVPYSPIGRGLFWGKAIKESLP 222
>pdb|3V0S|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 337
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 5 INQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMPELYNK 63
+ +G I Y G S SP I A++ P+ Q EY ++ RD + +P L +
Sbjct: 145 VEEGKIXYVGLSEASPDTIRRAHA-------VHPVTALQIEYSLWTRDIEDEIVP-LCRQ 196
Query: 64 IGVGMMAWSPISMALISGKIEEFTVP 89
+G+G++ +SPI L GK + ++P
Sbjct: 197 LGIGIVPYSPIGRGLFWGKAIKESLP 222
>pdb|3V0U|A Chain A, Crystal Structure Of Perakine Reductase, Founder Member Of
A Novel Akr Subfamily With Unique Conformational Changes
During Nadph Binding
Length = 338
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMPE 59
+ + +G I Y G S SP I A++ P+ Q EY ++ RD + +P
Sbjct: 142 LKKLVEEGKIKYVGLSEASPDTIRRAHA-------VHPVTALQIEYSLWTRDIEDEIVP- 193
Query: 60 LYNKIGVGMMAWSPISMALISGKIEEFTVP 89
L ++G+G++ +SPI L GK + ++P
Sbjct: 194 LCRQLGIGIVPYSPIGRGLFWGKAIKESLP 223
>pdb|2DVZ|A Chain A, Structure Of A Periplasmic Transporter
Length = 314
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 99 PKLNAAVMGEVERVLDNKPARPPMVSTLALR 129
P + AV G++E + DN P+ P + LR
Sbjct: 180 PAVADAVGGQIELIFDNLPSSXPQIQAGKLR 210
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,870,087
Number of Sequences: 62578
Number of extensions: 136938
Number of successful extensions: 271
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 27
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)