Query psy5380
Match_columns 129
No_of_seqs 135 out of 1546
Neff 8.6
Searched_HMMs 46136
Date Sat Aug 17 01:06:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1575|consensus 100.0 6.9E-29 1.5E-33 186.2 9.1 121 1-128 150-279 (336)
2 COG0667 Tas Predicted oxidored 99.9 8.1E-25 1.8E-29 164.9 9.9 116 1-124 141-262 (316)
3 PRK09912 L-glyceraldehyde 3-ph 99.9 4.9E-24 1.1E-28 162.4 10.2 123 1-128 153-286 (346)
4 TIGR01293 Kv_beta voltage-depe 99.9 5.9E-24 1.3E-28 160.1 10.3 124 1-128 135-270 (317)
5 PRK10625 tas putative aldo-ket 99.9 4.4E-24 9.6E-29 162.5 9.3 124 1-128 164-293 (346)
6 COG0656 ARA1 Aldo/keto reducta 99.9 1.4E-21 3.1E-26 144.1 7.6 96 1-129 126-221 (280)
7 PF00248 Aldo_ket_red: Aldo/ke 99.8 1.1E-20 2.4E-25 139.6 7.7 116 1-128 122-237 (283)
8 PRK14863 bifunctional regulato 99.8 1.3E-20 2.9E-25 140.7 6.5 111 1-129 127-237 (292)
9 PLN02587 L-galactose dehydroge 99.8 6.3E-20 1.4E-24 138.1 8.1 115 1-129 137-251 (314)
10 COG4989 Predicted oxidoreducta 99.8 8.1E-20 1.8E-24 131.8 6.8 103 1-124 142-246 (298)
11 cd06660 Aldo_ket_red Aldo-keto 99.8 8.4E-19 1.8E-23 129.7 9.4 107 1-123 133-239 (285)
12 PRK11172 dkgB 2,5-diketo-D-glu 99.8 6.5E-19 1.4E-23 130.0 8.3 95 1-128 114-208 (267)
13 KOG1577|consensus 99.7 6.9E-18 1.5E-22 125.1 6.3 96 1-123 144-239 (300)
14 PRK11565 dkgA 2,5-diketo-D-glu 99.7 2.3E-17 5E-22 122.3 7.2 97 1-129 123-219 (275)
15 PRK10376 putative oxidoreducta 99.7 6.7E-17 1.5E-21 120.5 8.6 93 1-128 150-242 (290)
16 COG1453 Predicted oxidoreducta 99.3 4.3E-12 9.4E-17 96.2 6.7 75 1-82 136-213 (391)
17 KOG1576|consensus 99.3 1.1E-11 2.4E-16 90.8 5.9 112 1-129 163-276 (342)
18 KOG3023|consensus 97.9 1.9E-05 4.1E-10 57.4 4.3 65 1-71 162-226 (285)
19 COG1140 NarY Nitrate reductase 84.0 0.37 8.1E-06 37.7 0.4 54 7-67 263-317 (513)
20 PF07021 MetW: Methionine bios 83.1 3.6 7.8E-05 29.3 4.9 74 1-78 95-172 (193)
21 PF01402 RHH_1: Ribbon-helix-h 77.7 0.97 2.1E-05 23.1 0.5 29 100-128 5-33 (39)
22 COG1149 MinD superfamily P-loo 74.1 11 0.00023 28.4 5.3 54 18-77 198-251 (284)
23 PF01890 CbiG_C: Cobalamin syn 72.9 9 0.00019 25.0 4.3 61 13-75 6-68 (121)
24 COG0159 TrpA Tryptophan syntha 68.0 40 0.00086 25.3 7.2 49 17-66 75-123 (265)
25 cd04742 NPD_FabD 2-Nitropropan 67.5 27 0.00059 27.9 6.6 67 4-72 34-102 (418)
26 PF12651 RHH_3: Ribbon-helix-h 64.9 6 0.00013 21.0 1.8 30 99-128 7-36 (44)
27 COG0329 DapA Dihydrodipicolina 63.6 35 0.00077 25.7 6.4 72 7-78 71-144 (299)
28 PF13378 MR_MLE_C: Enolase C-t 61.3 10 0.00022 23.7 2.8 55 16-77 3-57 (111)
29 PRK07027 cobalamin biosynthesi 61.2 26 0.00057 22.9 4.7 61 12-74 5-69 (126)
30 cd00954 NAL N-Acetylneuraminic 60.7 32 0.0007 25.6 5.7 70 8-77 69-141 (288)
31 COG4130 Predicted sugar epimer 58.3 59 0.0013 23.9 6.3 15 104-118 119-133 (272)
32 PHA00617 ribbon-helix-helix do 57.0 8.4 0.00018 23.5 1.6 30 99-128 44-73 (80)
33 cd00952 CHBPH_aldolase Trans-o 56.3 41 0.00089 25.4 5.7 70 8-77 76-148 (309)
34 TIGR02814 pfaD_fam PfaD family 55.7 60 0.0013 26.2 6.6 67 4-72 39-107 (444)
35 TIGR00683 nanA N-acetylneurami 54.3 48 0.001 24.8 5.7 70 8-77 69-141 (290)
36 PF10566 Glyco_hydro_97: Glyco 54.2 58 0.0013 24.5 6.0 59 17-76 28-97 (273)
37 PRK13505 formate--tetrahydrofo 54.2 33 0.00071 28.4 5.0 55 21-77 359-413 (557)
38 cd00477 FTHFS Formyltetrahydro 53.4 28 0.0006 28.6 4.4 100 21-124 343-448 (524)
39 PHA01748 hypothetical protein 53.3 12 0.00026 21.3 1.8 29 100-128 8-36 (60)
40 PF00701 DHDPS: Dihydrodipicol 53.2 55 0.0012 24.3 5.9 70 8-77 69-140 (289)
41 cd04436 DEP_fRgd2 DEP (Disheve 52.1 5.6 0.00012 24.5 0.3 15 2-16 56-71 (84)
42 cd00308 enolase_like Enolase-s 51.9 46 0.001 23.7 5.1 70 3-78 139-209 (229)
43 TIGR00789 flhB_rel flhB C-term 51.0 27 0.00058 21.3 3.2 26 55-80 30-55 (82)
44 cd00408 DHDPS-like Dihydrodipi 49.6 57 0.0012 24.0 5.4 66 11-77 69-136 (281)
45 PRK05788 cobalamin biosynthesi 49.0 45 0.00097 25.5 4.8 62 11-74 195-260 (315)
46 PRK04147 N-acetylneuraminate l 47.5 61 0.0013 24.2 5.3 69 8-77 72-143 (293)
47 COG3905 Predicted transcriptio 47.3 16 0.00034 22.4 1.7 29 100-128 8-36 (83)
48 PF01619 Pro_dh: Proline dehyd 47.2 64 0.0014 24.4 5.5 59 11-75 222-283 (313)
49 PF05378 Hydant_A_N: Hydantoin 45.7 57 0.0012 22.6 4.6 48 16-65 129-176 (176)
50 COG4130 Predicted sugar epimer 45.6 1.1E+02 0.0024 22.6 6.1 51 27-78 55-109 (272)
51 TIGR01928 menC_lowGC/arch o-su 45.0 55 0.0012 24.8 4.8 70 3-78 217-287 (324)
52 PF07611 DUF1574: Protein of u 44.0 35 0.00075 26.6 3.6 83 19-120 225-307 (345)
53 PRK09856 fructoselysine 3-epim 43.9 63 0.0014 23.4 4.9 60 13-76 3-71 (275)
54 PRK13507 formate--tetrahydrofo 43.3 33 0.00071 28.6 3.4 100 23-126 390-495 (587)
55 PRK03170 dihydrodipicolinate s 43.3 75 0.0016 23.6 5.3 66 11-77 73-140 (292)
56 PF14370 Topo_C_assoc: C-termi 43.2 11 0.00025 22.3 0.7 24 42-69 25-48 (71)
57 TIGR01660 narH nitrate reducta 42.7 9.7 0.00021 30.8 0.4 24 8-31 264-287 (492)
58 COG1678 Putative transcription 42.5 26 0.00055 25.0 2.4 60 8-73 130-189 (194)
59 KOG0629|consensus 41.0 83 0.0018 25.5 5.3 61 18-81 235-299 (510)
60 cd03319 L-Ala-DL-Glu_epimerase 40.3 77 0.0017 23.8 5.0 69 3-77 222-291 (316)
61 PRK09545 znuA high-affinity zi 40.2 98 0.0021 23.4 5.5 53 18-78 236-288 (311)
62 KOG4175|consensus 40.1 72 0.0016 23.3 4.4 53 18-70 77-153 (268)
63 COG0826 Collagenase and relate 40.1 1.1E+02 0.0024 23.7 5.9 78 5-83 23-111 (347)
64 cd03315 MLE_like Muconate lact 40.0 82 0.0018 23.0 5.0 60 12-77 184-243 (265)
65 KOG1185|consensus 39.7 96 0.0021 25.6 5.5 62 15-83 199-262 (571)
66 cd00951 KDGDH 5-dehydro-4-deox 39.3 86 0.0019 23.4 5.0 60 11-72 72-132 (289)
67 PF13380 CoA_binding_2: CoA bi 39.2 92 0.002 19.8 4.6 44 19-70 64-107 (116)
68 COG2102 Predicted ATPases of P 38.7 1.6E+02 0.0034 21.6 6.6 80 19-120 97-176 (223)
69 cd00950 DHDPS Dihydrodipicolin 38.6 84 0.0018 23.2 4.9 64 10-77 71-139 (284)
70 PF14871 GHL6: Hypothetical gl 38.6 31 0.00067 22.9 2.3 25 50-75 43-67 (132)
71 COG5625 Predicted transcriptio 38.1 49 0.0011 21.2 3.0 28 2-29 68-95 (113)
72 PRK09536 btuD corrinoid ABC tr 37.7 78 0.0017 25.1 4.7 69 2-77 284-352 (402)
73 PRK10558 alpha-dehydro-beta-de 37.0 81 0.0017 23.3 4.5 64 6-75 15-79 (256)
74 PF14336 DUF4392: Domain of un 36.5 33 0.0007 25.9 2.4 43 12-65 218-260 (291)
75 PRK06298 type III secretion sy 36.5 40 0.00087 26.3 2.9 25 56-80 294-318 (356)
76 PF07026 DUF1317: Protein of u 36.5 21 0.00045 20.4 1.0 17 64-80 10-26 (60)
77 cd03323 D-glucarate_dehydratas 36.3 83 0.0018 24.7 4.7 66 3-74 255-321 (395)
78 TIGR00674 dapA dihydrodipicoli 36.3 1.1E+02 0.0023 22.7 5.2 66 8-77 66-137 (285)
79 PLN02759 Formate--tetrahydrofo 36.1 43 0.00092 28.2 3.1 102 23-127 439-547 (637)
80 PRK10128 2-keto-3-deoxy-L-rham 34.9 1.1E+02 0.0024 22.9 4.9 64 6-74 14-77 (267)
81 PRK08776 cystathionine gamma-s 34.2 99 0.0021 24.3 4.9 65 8-77 123-187 (405)
82 TIGR02534 mucon_cyclo muconate 34.2 1E+02 0.0022 23.7 4.9 70 3-78 232-302 (368)
83 PHA01623 hypothetical protein 33.9 36 0.00078 19.1 1.7 30 99-128 18-47 (56)
84 PRK03620 5-dehydro-4-deoxygluc 33.8 1.2E+02 0.0027 22.7 5.2 64 7-72 74-139 (303)
85 PF04567 RNA_pol_Rpb2_5: RNA p 33.5 34 0.00074 18.4 1.6 15 2-16 2-16 (48)
86 PF03822 NAF: NAF domain; Int 32.7 66 0.0014 18.6 2.7 16 103-118 44-59 (63)
87 KOG3054|consensus 32.6 56 0.0012 24.4 2.9 81 22-127 201-281 (299)
88 TIGR02313 HpaI-NOT-DapA 2,4-di 32.4 1.4E+02 0.003 22.4 5.2 70 7-77 67-140 (294)
89 PRK13109 flhB flagellar biosyn 32.1 50 0.0011 25.8 2.8 25 56-80 302-326 (358)
90 COG2949 SanA Uncharacterized m 32.0 2E+02 0.0044 21.0 6.2 16 3-18 87-102 (235)
91 TIGR03239 GarL 2-dehydro-3-deo 31.9 1.1E+02 0.0025 22.4 4.6 64 6-75 8-72 (249)
92 COG1167 ARO8 Transcriptional r 31.9 1.8E+02 0.004 23.2 6.1 110 10-128 201-339 (459)
93 PLN02178 cinnamyl-alcohol dehy 31.8 84 0.0018 24.2 4.1 21 12-32 293-313 (375)
94 cd03322 rpsA The starvation se 30.9 1.4E+02 0.0031 22.9 5.2 64 3-72 208-272 (361)
95 PF13289 SIR2_2: SIR2-like dom 29.6 1.5E+02 0.0033 18.8 4.7 62 3-69 82-143 (143)
96 COG1393 ArsC Arsenate reductas 29.2 1.4E+02 0.003 19.3 4.2 52 10-68 3-54 (117)
97 PF01301 Glyco_hydro_35: Glyco 28.9 76 0.0017 24.2 3.3 60 17-77 20-89 (319)
98 cd01017 AdcA Metal binding pro 28.7 1.9E+02 0.0042 21.3 5.4 53 17-77 203-255 (282)
99 PF01212 Beta_elim_lyase: Beta 28.6 1.1E+02 0.0024 22.9 4.2 61 9-69 94-162 (290)
100 PF15470 DUF4637: Domain of un 28.5 23 0.0005 24.1 0.4 38 41-81 66-104 (173)
101 smart00481 POLIIIAc DNA polyme 28.5 64 0.0014 18.0 2.3 12 58-69 47-58 (67)
102 COG1082 IolE Sugar phosphate i 28.2 2.1E+02 0.0046 20.4 5.5 48 23-71 47-103 (274)
103 PTZ00386 formyl tetrahydrofola 28.1 98 0.0021 26.1 3.9 103 22-127 425-535 (625)
104 PF03869 Arc: Arc-like DNA bin 28.0 54 0.0012 17.8 1.8 22 99-120 9-30 (50)
105 PF01472 PUA: PUA domain; Int 27.9 72 0.0016 18.5 2.5 21 7-27 43-63 (74)
106 TIGR03249 KdgD 5-dehydro-4-deo 27.7 1.7E+02 0.0037 21.8 5.0 60 11-72 77-137 (296)
107 TIGR03151 enACPred_II putative 27.7 2.5E+02 0.0055 21.2 6.0 63 4-71 31-93 (307)
108 TIGR00853 pts-lac PTS system, 27.5 1.2E+02 0.0026 18.7 3.6 60 22-82 19-92 (95)
109 cd00953 KDG_aldolase KDG (2-ke 27.5 2.5E+02 0.0055 20.8 5.8 66 8-77 66-134 (279)
110 PRK09108 type III secretion sy 27.4 84 0.0018 24.5 3.3 25 56-80 295-319 (353)
111 PRK13958 N-(5'-phosphoribosyl) 27.2 1E+02 0.0022 22.0 3.5 33 8-46 51-84 (207)
112 TIGR01404 FlhB_rel_III type II 27.1 69 0.0015 24.8 2.8 25 56-80 292-316 (342)
113 TIGR02739 TraF type-F conjugat 26.9 1.5E+02 0.0033 22.0 4.5 48 26-77 145-192 (256)
114 COG3737 Uncharacterized conser 26.7 1.1E+02 0.0023 20.3 3.2 58 10-73 44-104 (127)
115 COG1831 Predicted metal-depend 26.6 1.5E+02 0.0032 22.5 4.3 60 2-66 114-185 (285)
116 cd03325 D-galactonate_dehydrat 26.4 1.9E+02 0.0041 22.1 5.2 64 3-72 221-285 (352)
117 PRK12773 flhB flagellar biosyn 26.3 74 0.0016 26.9 3.0 25 56-80 592-616 (646)
118 cd08568 GDPD_TmGDE_like Glycer 26.2 1.6E+02 0.0034 20.9 4.4 26 5-30 113-138 (226)
119 PRK14017 galactonate dehydrata 26.2 1.7E+02 0.0038 22.6 5.0 65 3-73 222-287 (382)
120 PRK14459 ribosomal RNA large s 26.1 2.4E+02 0.0052 22.2 5.7 10 66-75 316-325 (373)
121 PF04412 DUF521: Protein of un 26.0 1.7E+02 0.0036 23.4 4.8 61 10-71 292-354 (400)
122 PRK13703 conjugal pilus assemb 26.0 1.8E+02 0.0039 21.5 4.7 48 26-77 138-185 (248)
123 cd03317 NAAAR N-acylamino acid 26.0 1.5E+02 0.0032 22.7 4.5 61 11-77 231-291 (354)
124 COG2159 Predicted metal-depend 25.9 1.2E+02 0.0027 22.7 4.0 64 7-73 95-165 (293)
125 PRK15072 bifunctional D-altron 25.5 1.9E+02 0.0041 22.7 5.1 64 3-72 251-315 (404)
126 cd03318 MLE Muconate Lactonizi 25.4 1.6E+02 0.0034 22.6 4.6 69 3-77 233-302 (365)
127 TIGR02370 pyl_corrinoid methyl 25.4 1.3E+02 0.0029 21.0 3.9 54 5-65 109-163 (197)
128 PF00356 LacI: Bacterial regul 25.3 33 0.00072 18.3 0.6 17 109-125 2-18 (46)
129 TIGR02080 O_succ_thio_ly O-suc 25.3 1.7E+02 0.0036 22.8 4.7 61 10-75 116-176 (382)
130 PRK11675 LexA regulated protei 25.0 74 0.0016 19.8 2.2 29 100-128 56-84 (90)
131 PRK13352 thiamine biosynthesis 25.0 69 0.0015 25.7 2.5 27 55-85 209-235 (431)
132 COG0135 TrpF Phosphoribosylant 25.0 2.7E+02 0.0058 20.1 5.7 39 3-47 45-85 (208)
133 cd01018 ZntC Metal binding pro 24.9 2.2E+02 0.0047 20.8 5.1 16 19-34 202-217 (266)
134 PF09989 DUF2229: CoA enzyme a 24.8 2E+02 0.0043 20.7 4.7 38 33-71 181-218 (221)
135 cd08578 GDPD_NUC-2_fungi Putat 24.8 1.3E+02 0.0027 23.0 3.8 50 18-73 226-275 (300)
136 COG4710 Predicted DNA-binding 24.7 87 0.0019 18.7 2.3 25 100-124 11-35 (80)
137 PRK13602 putative ribosomal pr 24.3 1.4E+02 0.0031 17.8 3.4 67 2-82 4-71 (82)
138 TIGR00190 thiC thiamine biosyn 24.3 74 0.0016 25.5 2.5 27 55-85 206-232 (423)
139 PTZ00372 endonuclease 4-like p 24.1 2.6E+02 0.0055 22.5 5.5 61 13-73 168-239 (413)
140 PRK14461 ribosomal RNA large s 23.9 2.4E+02 0.0051 22.3 5.2 61 17-77 283-353 (371)
141 PF09009 Exotox-A_cataly: Exot 23.9 1.1E+02 0.0024 21.6 3.1 21 14-34 26-46 (236)
142 TIGR00290 MJ0570_dom MJ0570-re 23.7 2.9E+02 0.0063 20.0 6.9 51 55-119 124-174 (223)
143 TIGR00328 flhB flagellar biosy 23.7 92 0.002 24.2 2.9 25 56-80 293-317 (347)
144 cd02070 corrinoid_protein_B12- 23.5 2.1E+02 0.0046 20.0 4.6 22 5-27 107-129 (201)
145 cd08583 PI-PLCc_GDPD_SF_unchar 23.5 1.9E+02 0.0042 20.6 4.5 18 12-29 136-153 (237)
146 PF06080 DUF938: Protein of un 23.4 32 0.0007 24.7 0.4 53 65-120 134-187 (204)
147 COG0134 TrpC Indole-3-glycerol 23.3 63 0.0014 24.1 1.9 44 19-70 118-161 (254)
148 PRK12721 secretion system appa 23.2 91 0.002 24.3 2.8 25 56-80 293-317 (349)
149 PF10137 TIR-like: Predicted n 23.1 2.3E+02 0.0049 18.6 4.6 64 18-84 8-71 (125)
150 PF02426 MIase: Muconolactone 23.0 77 0.0017 19.7 2.0 13 2-14 32-44 (91)
151 cd08561 GDPD_cytoplasmic_ScUgp 22.8 2.8E+02 0.006 19.9 5.2 27 4-30 128-154 (249)
152 PF14542 Acetyltransf_CG: GCN5 22.5 40 0.00087 20.0 0.6 27 55-81 45-71 (78)
153 COG1038 PycA Pyruvate carboxyl 22.3 1.5E+02 0.0032 26.4 4.0 56 22-83 68-123 (1149)
154 PF13132 DUF3950: Domain of un 22.2 73 0.0016 15.5 1.4 14 15-28 14-27 (30)
155 cd03316 MR_like Mandelate race 22.1 2.5E+02 0.0054 21.3 5.1 65 3-73 234-299 (357)
156 PRK12468 flhB flagellar biosyn 21.8 1.1E+02 0.0024 24.2 3.1 25 56-80 300-324 (386)
157 cd06454 KBL_like KBL_like; thi 21.8 3.4E+02 0.0073 20.0 6.1 61 17-77 114-174 (349)
158 PF13200 DUF4015: Putative gly 21.8 2.7E+02 0.0059 21.4 5.1 97 20-116 12-133 (316)
159 PRK13506 formate--tetrahydrofo 21.7 1.9E+02 0.0042 24.2 4.5 101 22-126 381-488 (578)
160 PF13591 MerR_2: MerR HTH fami 21.6 24 0.00053 21.3 -0.5 48 2-50 18-71 (84)
161 cd03110 Fer4_NifH_child This p 21.4 2.6E+02 0.0057 18.6 5.4 53 18-73 127-179 (179)
162 COG1377 FlhB Flagellar biosynt 21.3 1.1E+02 0.0023 24.2 2.8 25 57-81 301-325 (363)
163 PF03180 Lipoprotein_9: NLPA l 21.3 3.4E+02 0.0073 19.8 6.0 81 12-93 2-99 (237)
164 PRK12772 bifunctional flagella 21.2 1E+02 0.0022 25.9 2.9 25 56-80 556-580 (609)
165 cd02067 B12-binding B12 bindin 21.1 2.2E+02 0.0048 17.7 4.4 55 4-65 23-78 (119)
166 PRK05702 flhB flagellar biosyn 21.1 1.2E+02 0.0026 23.7 3.1 25 56-80 300-324 (359)
167 COG2898 Uncharacterized conser 21.1 3.6E+02 0.0078 22.5 5.9 86 19-115 271-368 (538)
168 PRK08247 cystathionine gamma-s 20.9 2.7E+02 0.0058 21.4 5.1 56 18-78 124-179 (366)
169 PF01408 GFO_IDH_MocA: Oxidore 20.8 2.2E+02 0.0047 17.5 4.9 21 56-76 77-97 (120)
170 TIGR01182 eda Entner-Doudoroff 20.7 3.3E+02 0.0071 19.5 5.2 17 54-70 90-106 (204)
171 TIGR01502 B_methylAsp_ase meth 20.7 3.1E+02 0.0067 21.9 5.4 57 12-74 301-357 (408)
172 cd03327 MR_like_2 Mandelate ra 20.2 2.6E+02 0.0056 21.3 4.8 64 3-72 216-280 (341)
173 COG0289 DapB Dihydrodipicolina 20.2 2.4E+02 0.0051 21.3 4.4 42 2-47 87-128 (266)
174 KOG2915|consensus 20.1 1.6E+02 0.0035 22.5 3.5 32 14-45 205-238 (314)
No 1
>KOG1575|consensus
Probab=99.96 E-value=6.9e-29 Score=186.19 Aligned_cols=121 Identities=31% Similarity=0.530 Sum_probs=100.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|.+++++|||||||+|+|++++|.+|..++. .+++++|++||+++|+++|.+++++|+++||++++||||++|+||
T Consensus 150 L~~lve~Gki~yiGlSe~sa~~I~~a~~~~~----~p~~s~Q~eysl~~Rd~ee~~i~~~c~~~Gi~li~ysPL~~G~Lt 225 (336)
T KOG1575|consen 150 LTDLVEQGKIRYWGLSEWSAEEIREAHAVAP----IPIVAVQVEYSLLSRDKEERGIIPLCRELGIGLIAWSPLGRGLLT 225 (336)
T ss_pred HHHHHhcCceEEEEeccCCHHHHHHHHHhcC----CCceEeeeechhhhcchhhhhHHHHHHHcCcceEEecccccceec
Confidence 5689999999999999999999999999875 679999999999999998888999999999999999999999999
Q ss_pred CCccCCC-CCCCCCc---ccccccc-----CHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFT-VPVYPKS---SKLVPKL-----NAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~-~~~~~~~---~~~~~~~-----~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
|||.... .+.+... ....+.+ +..+++++.++|+++|+| ++|+||
T Consensus 226 gk~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~k~g~T---~~qlAL 279 (336)
T KOG1575|consen 226 GKYKLGEDSRNGDKRFQFLGLSPQTEEGDKQKPILEALSKIAEKHGCT---VPQLAL 279 (336)
T ss_pred cCcccccccccccccccccccccccchhhhHHHHHHHHHHHHHHcCCC---HHHHHH
Confidence 9998843 3433221 1222332 447889999999999976 455555
No 2
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=99.92 E-value=8.1e-25 Score=164.92 Aligned_cols=116 Identities=28% Similarity=0.420 Sum_probs=93.9
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++|||||||+||++++++.++.+++ .+++++|.+||+++|+. |.+++++|+++||++++||||++|+||
T Consensus 141 L~~l~~~G~ir~iG~S~~~~~~i~~a~~~~-----~~~~~~Q~~ynl~~R~~-e~~l~~~~~~~gi~~~~~spla~G~Lt 214 (316)
T COG0667 141 LDELVREGKIRYIGVSNYSAEQIAEALAVA-----APIDSLQPEYNLLERDA-EKELLPLCREEGIGLLAYSPLASGLLT 214 (316)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHhc-----CCceeecccCccccccc-hhHHHHHHHHcCCeEEEecCccccccC
Confidence 578999999999999999999999999875 47999999999999875 667999999999999999999999999
Q ss_pred CCccCCCCCCCCCccc---ccc---ccCHHHHHHHHHHHhhCCCCcchhh
Q psy5380 81 GKIEEFTVPVYPKSSK---LVP---KLNAAVMGEVERVLDNKPARPPMVS 124 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~---~~~---~~~~~~~~~l~~la~~~~~~~~~la 124 (129)
|||.++ +.+.+... +.. +....+++.++++++++++++.|+|
T Consensus 215 gk~~~~--~~~~r~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~aq~A 262 (316)
T COG0667 215 GKYLPG--PEGSRASELPRFQRELTERGLAILRALEELAKELGATPAQVA 262 (316)
T ss_pred CCcCCC--cchhhccccccchhhhhHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999984 33322211 111 1133578889999988998754443
No 3
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=99.91 E-value=4.9e-24 Score=162.36 Aligned_cols=123 Identities=23% Similarity=0.413 Sum_probs=95.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||++++++++.+++...+ .+++++|++||+++|.....+++++|+++||++++||||++|+|+
T Consensus 153 l~~l~~~GkIr~iGvSn~~~~~~~~~~~~~~~~~-~~~~~~Q~~ynll~~~~~~~~ll~~~~~~gI~via~spl~~G~Lt 231 (346)
T PRK09912 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWK-IPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVGCIAFTPLAQGLLT 231 (346)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHhcC-CCcEEeeccCCceecccchhhHHHHHHHcCceEEEehhhcCcccc
Confidence 5789999999999999999999999988876666 378899999999999753357999999999999999999999999
Q ss_pred CCccCCCCCCCCCc-------ccccccc----CHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFTVPVYPKS-------SKLVPKL----NAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~~~~~~~~-------~~~~~~~----~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
|+|.. ..|.+.+. +.+.+.+ ..+.++.++++++++++++ +++||
T Consensus 232 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~g~t~---aq~AL 286 (346)
T PRK09912 232 GKYLN-GIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQRGQSM---AQMAL 286 (346)
T ss_pred CCCCC-CCCCCccccccccchhhhchhhccHHHHHHHHHHHHHHHHhCCCH---HHHHH
Confidence 99865 22322221 1122221 2245678888999888765 55555
No 4
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=99.91 E-value=5.9e-24 Score=160.14 Aligned_cols=124 Identities=48% Similarity=0.859 Sum_probs=97.0
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||+++++.++...+...++.+++++|++||+++|+..+++++++|+++||++++||||++|+||
T Consensus 135 L~~l~~~G~ir~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~~~~gi~v~a~spl~~G~Lt 214 (317)
T TIGR01293 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELYHKIGVGAMTWSPLACGLVS 214 (317)
T ss_pred HHHHHHcCCeeEEEecCCCHHHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHHHHcCCeEEEeccccccccC
Confidence 57899999999999999999999999888888887789999999999999754668999999999999999999999999
Q ss_pred CCccCCCCCCCCCcc-c---ccc-----c---cCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFTVPVYPKSS-K---LVP-----K---LNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~~~~~~~~~-~---~~~-----~---~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
|+|... .|.+.+.. . ++. . ...+.++.++++|+++++++ +++||
T Consensus 215 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ia~~~g~s~---aqlal 270 (317)
T TIGR01293 215 GKYDSG-IPPYSRATLKGYQWLKDKILSEEGRRQQARLKDLQAIAERLGCTL---PQLAI 270 (317)
T ss_pred CCCCCC-CCCcccccccccchhhhhhcchhhHHHHHHHHHHHHHHHHHCcCH---HHHHH
Confidence 998652 23322211 0 000 0 01245677888999888764 55555
No 5
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=99.91 E-value=4.4e-24 Score=162.49 Aligned_cols=124 Identities=18% Similarity=0.262 Sum_probs=97.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||+.+++.++...+..+++..++++|++||++++.. +.+++++|+++||++++||||++|+|+
T Consensus 164 L~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~-~~~ll~~~~~~gi~via~spL~~G~Lt 242 (346)
T PRK10625 164 LAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSF-EVGLAEVSQYEGVELLAYSCLAFGTLT 242 (346)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccc-hhHHHHHHHHcCCeEEEeccccCeecc
Confidence 5789999999999999999999999988887777777899999999999985 668999999999999999999999999
Q ss_pred CCccCCCCCCCCC---cccccc---ccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFTVPVYPK---SSKLVP---KLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~~~~~~~---~~~~~~---~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
|+|.....|.+.+ ...+.+ ....+.++.++++|+++++++ +|+||
T Consensus 243 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~g~t~---aqval 293 (346)
T PRK10625 243 GKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAAYVDIAKRHGLDP---AQMAL 293 (346)
T ss_pred CCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHhCCCH---HHHHH
Confidence 9986633333221 111111 112245778889999988864 55555
No 6
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=99.85 E-value=1.4e-21 Score=144.14 Aligned_cols=96 Identities=22% Similarity=0.399 Sum_probs=79.9
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++++++||||+||||||+...++++.+.+. ..|+++|++||++.+++ +++++|+++||.+++||||++|-.
T Consensus 126 lE~l~~~G~ir~IGVSNF~~~~L~~l~~~~~----~~p~~NQIe~hp~~~q~---el~~~~~~~gI~v~AysPL~~g~~- 197 (280)
T COG0656 126 LEELVDEGLIRAIGVSNFGVEHLEELLSLAK----VKPAVNQIEYHPYLRQP---ELLPFCQRHGIAVEAYSPLAKGGK- 197 (280)
T ss_pred HHHHHhcCCccEEEeeCCCHHHHHHHHHhcC----CCCceEEEEeccCCCcH---HHHHHHHHcCCEEEEECCcccccc-
Confidence 6899999999999999999999999999843 68999999999999986 399999999999999999997432
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhcccC
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR 129 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL~ 129 (129)
... + ..+.+||++++.++ ||++||
T Consensus 198 --l~~----------------~----~~l~~Ia~k~g~t~---AQv~L~ 221 (280)
T COG0656 198 --LLD----------------N----PVLAEIAKKYGKTP---AQVALR 221 (280)
T ss_pred --ccc----------------C----hHHHHHHHHhCCCH---HHHHHH
Confidence 111 0 17888999998764 555553
No 7
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=99.83 E-value=1.1e-20 Score=139.60 Aligned_cols=116 Identities=22% Similarity=0.363 Sum_probs=86.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++|+||+||+|||+++.++++ ...+..+|+++|++||++++.. +.+++++|+++||++++|+||++|+|+
T Consensus 122 l~~l~~~G~ir~iGvs~~~~~~l~~~----~~~~~~~~~~~q~~~n~~~~~~-~~~l~~~~~~~gi~v~a~~~l~~G~l~ 196 (283)
T PF00248_consen 122 LEELKKEGKIRHIGVSNFSPEQLEAA----LKIGSIPPDVVQINYNLLNRRE-EEGLLEFCREHGIGVIAYSPLAGGLLT 196 (283)
T ss_dssp HHHHHHTTSEEEEEEES--HHHHHHH----HTCTSS-ESEEEEE-BTTBHBG-GHHHHHHHHHTT-EEEEESTTGGGCGG
T ss_pred hhhccccccccccccccccccccccc----cccccccccccccccccccccc-cccccccccccccccccccccccCccc
Confidence 57899999999999999999998888 3456689999999999996664 678999999999999999999999999
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
+++.....+........ ..+..+.+.+++++++.+ ++|+||
T Consensus 197 ~~~~~~~~~~~~~~~~~----~~~~~~~l~~~a~~~g~s---~~q~al 237 (283)
T PF00248_consen 197 GKYKSPPPPPSRASLRD----AQELADALRELAEEHGVS---PAQLAL 237 (283)
T ss_dssp TTTTTTTTSTTTSGSST----HGGGHHHHHHHHHHHTSS---HHHHHH
T ss_pred cccccCCCcccccccch----hhhhhhhhhhhhhhcccc---cchhhh
Confidence 99877432221111111 235677889999998876 455554
No 8
>PRK14863 bifunctional regulator KidO; Provisional
Probab=99.82 E-value=1.3e-20 Score=140.70 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=81.5
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||+++++.++... .+|+++|++||+++|+.+..+++++|+++||++++|+||++|+|+
T Consensus 127 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~------~~~~~~Q~~~n~l~~~~~~~~~l~~~~~~gi~v~a~spl~~G~L~ 200 (292)
T PRK14863 127 LQALKDQGLFAKIGVSAHASDDPVGVARR------FKPDILQAPASLLDQRLLADGSLQRIAGMGVEVHLRSIFLNGLLF 200 (292)
T ss_pred HHHHHHcCCcceEeeeccCHHHHHHHHhc------CCCCEEEecCCcccccccccchHHHHHhCCCEEEEechhhCcccc
Confidence 57899999999999999999988776431 478999999999999753346899999999999999999999998
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhcccC
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR 129 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL~ 129 (129)
+.... .+. . ... ....+..+.+++.+.+.+ ++++||+
T Consensus 201 ~~~~~--~~~--~----~~~-~~~~~~~~~~~~~~~~~s---~aqlala 237 (292)
T PRK14863 201 LPPDR--VPA--Q----LKG-ASGRLSRVRRMIAEGRSD---PLQAALG 237 (292)
T ss_pred CCccc--Ccc--c----hhh-hhHHHHHHHHHHHHcCCC---HHHHHHH
Confidence 63211 010 0 111 113455666677666654 5666653
No 9
>PLN02587 L-galactose dehydrogenase
Probab=99.81 E-value=6.3e-20 Score=138.06 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=85.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||++++++.+.+... .+...++.+|++||++++.. .+++++|+++||++++|+||++|+|+
T Consensus 137 l~~l~~~Gkir~iGvSn~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~--~~ll~~~~~~gi~v~a~spl~~G~L~ 213 (314)
T PLN02587 137 LQKLKESGKVRFIGITGLPLAIFTYVLDRVP-PGTVDVILSYCHYSLNDSSL--EDLLPYLKSKGVGVISASPLAMGLLT 213 (314)
T ss_pred HHHHHHCCCeEEEEecCCCHHHHHHHHHhhh-cCCCCeEEeccccCcchhhH--HHHHHHHHHcCceEEEechhhccccC
Confidence 5789999999999999999999888776432 33345666899999988753 47999999999999999999999999
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhcccC
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR 129 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL~ 129 (129)
|++.+...+ .+....+.++.+++++++++.++ +++|||
T Consensus 214 ~~~~~~~~~--------~~~~~~~~~~~l~~~a~~~~~s~---aq~al~ 251 (314)
T PLN02587 214 ENGPPEWHP--------APPELKSACAAAATHCKEKGKNI---SKLALQ 251 (314)
T ss_pred CCCCCCCCC--------CCHHHHHHHHHHHHHHHHhCCCH---HHHHHH
Confidence 985321000 01111245667788888888764 555553
No 10
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=99.80 E-value=8.1e-20 Score=131.83 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=86.8
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc-cc
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA-LI 79 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G-~L 79 (129)
+..|.++|||||+|||||++.+++-...+.. .+++.+|++.|+++.+...++.+++|+.+.|..++||||++| +|
T Consensus 142 f~~L~~sGKVr~fGVSNf~p~Q~~LL~s~l~----~~LvtNQlelS~~~~~~~~DGtLd~~q~~~v~pmaWSpl~gG~~F 217 (298)
T COG4989 142 FTHLHKSGKVRHFGVSNFNPAQFELLQSRLP----FTLVTNQLELSPLHTPMLLDGTLDYCQQLRVRPMAWSPLGGGGLF 217 (298)
T ss_pred HHHHHhcCCeeeeecCCCCHHHHHHHHHhcc----chhhhcceeeccccccccccchHHHHHHcCCCcccccccCCCccc
Confidence 3578999999999999999999998888765 578899999999999888889999999999999999999887 44
Q ss_pred CCCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCC-CCcchhh
Q psy5380 80 SGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKP-ARPPMVS 124 (129)
Q Consensus 80 tgk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~-~~~~~la 124 (129)
+| ..+ .+++.+.++++|++.| .+..+++
T Consensus 218 ~g-~~~----------------~q~l~~~l~~ia~e~ga~s~~~Va 246 (298)
T COG4989 218 LG-DDK----------------FQRLRKVLDRIAEEYGAVSITAVA 246 (298)
T ss_pred cC-Ccc----------------hHHHHHHHHHHHHHhCcccHHHHH
Confidence 44 222 4678899999999999 4544443
No 11
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=99.78 E-value=8.4e-19 Score=129.69 Aligned_cols=107 Identities=22% Similarity=0.425 Sum_probs=86.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++++++|+||+||+|||+++.+.++.+.+. .+|+++|++||++++.. +.+++++|+++||++++|+||++|.|+
T Consensus 133 l~~l~~~G~ir~iGvS~~~~~~l~~~~~~~~----~~~~~~q~~~n~~~~~~-~~~~~~~~~~~gi~v~~~~~l~~g~l~ 207 (285)
T cd06660 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAG----VPPAVNQVEYNLLDRQA-EEELLPYCREHGIGVIAYSPLAGGLLT 207 (285)
T ss_pred HHHHHHcCCccEEEeeCCCHHHHHHHHHhhC----CCceEEecccCcccCch-HHHHHHHHHHcCcEEEEeccccCceec
Confidence 5789999999999999999999999987752 68999999999999986 447999999999999999999999999
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchh
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMV 123 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~l 123 (129)
+++.....+. .......+..+++..+.+..++
T Consensus 208 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~s~~q~ 239 (285)
T cd06660 208 GKYLPGAPPP-----------EGDLLEALKEIAEKHGVTPAQV 239 (285)
T ss_pred CCCCCCCCCC-----------hhhHHHHHHHHHHHhCCCHHHH
Confidence 8765521111 1124567788888888765444
No 12
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=99.78 E-value=6.5e-19 Score=130.00 Aligned_cols=95 Identities=14% Similarity=0.207 Sum_probs=77.0
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++++++||||+||+|||++++++++.+.+ +..+++++|++||++++. .+++++|+++||++++|+||++|.+.
T Consensus 114 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~~---~~~~~~~~Q~~~~~~~~~---~~ll~~~~~~gi~v~a~spl~~G~~~ 187 (267)
T PRK11172 114 LLEAKKQGLTREIGISNFTIALMKQAIAAV---GAENIATNQIELSPYLQN---RKVVAFAKEHGIHVTSYMTLAYGKVL 187 (267)
T ss_pred HHHHHHCCCCCEEEEccCCHHHHHHHHHhc---CCCCCeEEeeecCCCCCc---HHHHHHHHHCCCEEEEECCCCCCccc
Confidence 578999999999999999999999988753 323689999999999875 36999999999999999999998653
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
+. ..+++++++++.++ +|+||
T Consensus 188 ~~------------------------~~l~~~a~~~~~s~---aqval 208 (267)
T PRK11172 188 KD------------------------PVIARIAAKHNATP---AQVIL 208 (267)
T ss_pred CC------------------------HHHHHHHHHhCCCH---HHHHH
Confidence 21 14777888887764 44444
No 13
>KOG1577|consensus
Probab=99.73 E-value=6.9e-18 Score=125.13 Aligned_cols=96 Identities=19% Similarity=0.338 Sum_probs=79.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++++++|++|+||||||+..++++....++ .+|+++|+++++..++. +++++|+++||-+.+||||+++--
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~k----i~P~vnQvE~HP~~~Q~---~L~~fCk~~~I~v~AYSpLg~~~~- 215 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAK----IKPAVNQVECHPYLQQK---KLVEFCKSKGIVVTAYSPLGSPGR- 215 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCC----CCCccceeeccCCcChH---HHHHHHhhCCcEEEEecCCCCCCC-
Confidence 6789999999999999999999999999874 89999999999988874 599999999999999999998733
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchh
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMV 123 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~l 123 (129)
++ + -+ --+.+.+||++++.+++|+
T Consensus 216 ~~--~--------------ll---~~~~l~~iA~K~~kt~aQI 239 (300)
T KOG1577|consen 216 GS--D--------------LL---EDPVLKEIAKKYNKTPAQI 239 (300)
T ss_pred cc--c--------------cc---cCHHHHHHHHHhCCCHHHH
Confidence 11 0 00 0126889999999886444
No 14
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=99.71 E-value=2.3e-17 Score=122.29 Aligned_cols=97 Identities=16% Similarity=0.274 Sum_probs=76.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||++++++++.+. .+ .+|+++|++||++.+. .+++++|+++||++++||||++|. .
T Consensus 123 l~~l~~~G~ir~iGvSn~~~~~l~~~~~~---~~-v~~~~~Q~~~~~~~~~---~~~~~~~~~~~i~~~a~spl~~G~-~ 194 (275)
T PRK11565 123 MIELQKEGLIKSIGVCNFQIHHLQRLIDE---TG-VTPVINQIELHPLMQQ---RQLHAWNATHKIQTESWSPLAQGG-K 194 (275)
T ss_pred HHHHHHcCCeeEEeeccCCHHHHHHHHHh---CC-CCceeeeeecCCccch---HHHHHHHHHCCCEEEEEccCCCCC-c
Confidence 57899999999999999999999988753 23 4689999999999875 368999999999999999999873 0
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhcccC
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR 129 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL~ 129 (129)
+. +. .+.+++++++++++ ++|+|||
T Consensus 195 ~~------------------~~---~~~l~~ia~~~g~s---~aq~aL~ 219 (275)
T PRK11565 195 GV------------------FD---QKVIRDLADKYGKT---PAQIVIR 219 (275)
T ss_pred cc------------------cc---CHHHHHHHHHhCCC---HHHHHHH
Confidence 00 00 13688889888876 5666654
No 15
>PRK10376 putative oxidoreductase; Provisional
Probab=99.70 E-value=6.7e-17 Score=120.53 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=74.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccC
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
|++|+++||||+||+|||++++++++.+. .+++++|++||++++.. .+++++|+++||++++|+||+++
T Consensus 150 l~~l~~~Gkir~iGvSn~~~~~l~~~~~~------~~~~~~q~~~~~~~~~~--~~~~~~~~~~gi~v~a~~pL~g~--- 218 (290)
T PRK10376 150 LAELQRQGLVRHIGLSNVTPTQVAEARKI------AEIVCVQNHYNLAHRAD--DALIDALARDGIAYVPFFPLGGF--- 218 (290)
T ss_pred HHHHHHCCceeEEEecCCCHHHHHHHHhh------CCeEEEecccCCCcCCh--HHHHHHHHHcCCEEEEeecCCCC---
Confidence 57899999999999999999999998875 46889999999999873 46899999999999999999732
Q ss_pred CCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 81 GKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 81 gk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
.. ...+.++++++++++++ +++||
T Consensus 219 ---~~------------------~~~~~l~~ia~~~~~t~---aq~al 242 (290)
T PRK10376 219 ---TP------------------LQSSTLSDVAASLGATP---MQVAL 242 (290)
T ss_pred ---Ch------------------hhhHHHHHHHHHhCCCH---HHHHH
Confidence 01 01246788888888764 45544
No 16
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=99.31 E-value=4.3e-12 Score=96.18 Aligned_cols=75 Identities=15% Similarity=0.070 Sum_probs=60.7
Q ss_pred ChHHHHcCCccEEEecCCCH-HHHHHHHHHHHhcCCCCceEecccccccccchhh--ccHHHHHHHhCCeeeeecccccc
Q psy5380 1 MNHAINQGWIMYWGTSRWSP-VEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAE--LYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~-~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e--~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+++++++||||++|+|-|+. +.+.++... -+++++|++||+++..- . .+.+++|.++|++++..+|+.+|
T Consensus 136 ~~kak~eGkIr~~GFSfHgs~e~~~~iv~a------~~~dfvqlq~ny~d~~n-~~~~~~l~~A~~~~~gI~IMeP~~gG 208 (391)
T COG1453 136 LEKAKAEGKIRNAGFSFHGSTEVFKEIVDA------YPWDFVQLQYNYIDQKN-QAGTEGLKYAASKGLGIFIMEPLDGG 208 (391)
T ss_pred HHHHHhcCcEEEeeecCCCCHHHHHHHHhc------CCcceEEeeeeeeccch-hcccHHHHHHHhCCCcEEEEeeCCCC
Confidence 46789999999999999865 444555443 35899999999999874 2 25688999999999999999999
Q ss_pred ccCCC
Q psy5380 78 LISGK 82 (129)
Q Consensus 78 ~Ltgk 82 (129)
-|..+
T Consensus 209 ~l~~~ 213 (391)
T COG1453 209 GLLYN 213 (391)
T ss_pred CcccC
Confidence 88864
No 17
>KOG1576|consensus
Probab=99.26 E-value=1.1e-11 Score=90.82 Aligned_cols=112 Identities=14% Similarity=0.141 Sum_probs=87.3
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEe--cccccccccchhhccHHHHHHHhCCeeeeeccccccc
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE--QTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~--q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
|++++++||||+||+|.|+.+.+.+..+. +....+++ -.+|++.+... -..++..+..|++++.-++|+.|+
T Consensus 163 Le~lk~~Gk~RfiGitgypldvl~~~ae~----~~G~~dvvlsY~ry~l~d~tL--l~~~~~~~sk~vgVi~AsalsmgL 236 (342)
T KOG1576|consen 163 LEELKQEGKIRFIGITGYPLDVLTECAER----GKGRLDVVLSYCRYTLNDNTL--LRYLKRLKSKGVGVINASALSMGL 236 (342)
T ss_pred HHHHHhcCceeEeeecccchHHHHHHHhc----CCCceeeehhhhhhccccHHH--HHHHHHHHhcCceEEehhhHHHHH
Confidence 57899999999999999999999888753 32345554 47888877764 245678889999999999999999
Q ss_pred cCCCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhcccC
Q psy5380 79 ISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR 129 (129)
Q Consensus 79 Ltgk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL~ 129 (129)
|+.+-.+ + +.+.++|+++...+-++.|...+..++.+|++
T Consensus 237 Lt~~gp~----~-------wHPaS~Elk~~a~~aa~~Cq~rnv~l~kLA~~ 276 (342)
T KOG1576|consen 237 LTNQGPP----P-------WHPASDELKEAAKAAAEYCQSRNVELGKLAMY 276 (342)
T ss_pred hhcCCCC----C-------CCCCCHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 9976322 1 23347888888888888888778888888763
No 18
>KOG3023|consensus
Probab=97.88 E-value=1.9e-05 Score=57.41 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=57.7
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeee
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAW 71 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~ 71 (129)
|++++.+|+|..+|+|.+++.++++....+. ..|.++|+..+=...-| .++..+|..++|.+..-
T Consensus 162 LE~lv~~~kI~~lGvSDfda~qLe~Li~saq----VvP~snqVnL~~cCvvP--pdLqafa~~hdiQLltH 226 (285)
T KOG3023|consen 162 LEELVGEGKIGTLGVSDFDANQLERLISSAQ----VVPESNQVNLGQCCVVP--PDLQAFADRHDIQLLTH 226 (285)
T ss_pred HHHHhccCceeeeeecccCHHHHHHHHhhhc----cccccceeeccccccCC--HHHHHHhhhcceeeeec
Confidence 5789999999999999999999999999887 78999999888777665 57899999999998765
No 19
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=84.04 E-value=0.37 Score=37.73 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=34.0
Q ss_pred cCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEeccccccc-ccchhhccHHHHHHHhCCe
Q psy5380 7 QGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMF-CRDKAELYMPELYNKIGVG 67 (129)
Q Consensus 7 ~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~-~~~~~e~~~~~~~~~~gi~ 67 (129)
-|+|||.||--|+++++.++...-+ .-+..+.+..++ |+. +..+++.+++.||.
T Consensus 263 VGriRYlGVlLYDaDrv~eaAs~~~-----e~dly~~Q~~ifLDP~--DP~Vi~~A~k~Gip 317 (513)
T COG1140 263 VGRIRYLGVLLYDADRVEEAASTEN-----EKDLYERQLDVFLDPH--DPAVIEQARKDGIP 317 (513)
T ss_pred hcceeeeeeeeecHHHHHHhhcCcc-----HHHHHHHHHhhhcCCC--CHHHHHHHHHcCCc
Confidence 4899999999999999998875422 112233333332 222 34566667777764
No 20
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=83.06 E-value=3.6 Score=29.27 Aligned_cols=74 Identities=7% Similarity=0.043 Sum_probs=57.2
Q ss_pred ChHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchh----hccHHHHHHHhCCeeeeeccccc
Q psy5380 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKA----ELYMPELYNKIGVGMMAWSPISM 76 (129)
Q Consensus 1 l~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~----e~~~~~~~~~~gi~~~~~spL~~ 76 (129)
|+++.+=|+---|++.||.-|+.+--.-. .| --|+.-+.+|+..+...- -.++.++|++.|+.+.-..++..
T Consensus 95 L~EmlRVgr~~IVsFPNFg~W~~R~~l~~---~G-rmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 95 LEEMLRVGRRAIVSFPNFGHWRNRLQLLL---RG-RMPVTKALPYEWYDTPNIHLCTIKDFEDLCRELGIRIEERVFLDG 170 (193)
T ss_pred HHHHHHhcCeEEEEecChHHHHHHHHHHh---cC-CCCCCCCCCCcccCCCCcccccHHHHHHHHHHCCCEEEEEEEEcC
Confidence 35667778878899999999987665543 23 468889999999886431 24567899999999999999887
Q ss_pred cc
Q psy5380 77 AL 78 (129)
Q Consensus 77 G~ 78 (129)
+-
T Consensus 171 ~~ 172 (193)
T PF07021_consen 171 GR 172 (193)
T ss_pred CC
Confidence 64
No 21
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=77.69 E-value=0.97 Score=23.06 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=23.8
Q ss_pred ccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 100 KLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 100 ~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
.++++..+.++++|++.|.+...+...||
T Consensus 5 ~l~~~~~~~l~~~a~~~g~s~s~~ir~ai 33 (39)
T PF01402_consen 5 RLPDELYERLDELAKELGRSRSELIREAI 33 (39)
T ss_dssp EEEHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 35688999999999999998877766654
No 22
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=74.06 E-value=11 Score=28.44 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+...++.++.+..+..| .+..++-++||+-+. ++.++|++.|+.++.--|...-
T Consensus 198 ~glhD~kr~~el~~~f~-ip~~iViNr~~~g~s-----~ie~~~~e~gi~il~~IPyd~~ 251 (284)
T COG1149 198 FGLHDLKRALELVEHFG-IPTGIVINRYNLGDS-----EIEEYCEEEGIPILGEIPYDKD 251 (284)
T ss_pred cchhHHHHHHHHHHHhC-CceEEEEecCCCCch-----HHHHHHHHcCCCeeEECCcchh
Confidence 44567788888888888 588888899966543 4678999999999988887543
No 23
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=72.86 E-value=9 Score=24.97 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=34.5
Q ss_pred EEe-cCCCHHHHHHHHHHH-HhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccc
Q psy5380 13 WGT-SRWSPVEIMEAYSNC-RQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPIS 75 (129)
Q Consensus 13 iG~-Sn~~~~~~~~~~~~~-~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~ 75 (129)
||+ ++-+.+.+.++.+.+ ..++ ..+..+-.--++-... .|..+++++++.|+.++.|++=.
T Consensus 6 iGcrr~~~~~~i~~ai~~~l~~~~-~~~~~i~~iasi~~K~-~E~~l~~~A~~l~~~~~~~~~ee 68 (121)
T PF01890_consen 6 IGCRRGAPAEEIEEAIEQALAEAG-LSPRSIAAIASIDIKA-DEPGLLELAEELGIPLRFFSAEE 68 (121)
T ss_dssp EEE-SS--HHHHHHHHHHHHHHCT---GGGEEEEEESSSSS---HHHHHHHHHCTSEEEEE-HHH
T ss_pred eCcCCCCCHHHHHHHHHHHHHHcC-CChhhccEEEeccccC-CCHHHHHHHHHhCCCeEEECHHH
Confidence 444 466777887776554 3333 2333333333443333 36789999999999999997754
No 24
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=68.05 E-value=40 Score=25.27 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCC
Q psy5380 17 RWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGV 66 (129)
Q Consensus 17 n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi 66 (129)
+++.+..-+..+..+..+..-|.++-.-||++.+.. .+.+++.|++.|+
T Consensus 75 g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G-ie~F~~~~~~~Gv 123 (265)
T COG0159 75 GVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG-IEKFLRRAKEAGV 123 (265)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh-HHHHHHHHHHcCC
Confidence 456666666666666555455888888899977664 3457778888887
No 25
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.52 E-value=27 Score=27.88 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=46.1
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHHHHhc-C-CCCceEecccccccccchhhccHHHHHHHhCCeeeeec
Q psy5380 4 AINQGWIMYWGTSRWSPVEIMEAYSNCRQF-N-CATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 4 l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~-g-~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
+-+.|-+-.+|..+.+++++++.++..++. . -.++-++-+ .+.-++. .+.++++.+.++||.++..|
T Consensus 34 vs~AGgLG~lgag~l~~e~l~~~I~~ir~~lt~~~PfGVNL~-~~~~~~~-~e~~~v~l~le~gV~~ve~s 102 (418)
T cd04742 34 MGKAGMLGFFGAGGLPLDEVEQAIERIQAALGNGEPYGVNLI-HSPDEPE-LEEGLVDLFLRHGVRVVEAS 102 (418)
T ss_pred HHhCCCeeeecCCCCCHHHHHHHHHHHHHhccCCCCeEEeee-cCCCCch-hHHHHHHHHHHcCCCEEEec
Confidence 446788999999999999999998887652 1 124444433 3332332 24567899999999877654
No 26
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=64.91 E-value=6 Score=21.04 Aligned_cols=30 Identities=10% Similarity=0.103 Sum_probs=24.9
Q ss_pred cccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 99 PKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 99 ~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
..+++++.+.+++++.+.+.+.+.+..-||
T Consensus 7 ~~l~~el~~~L~~ls~~t~i~~S~Ll~eAl 36 (44)
T PF12651_consen 7 FSLDKELYEKLKELSEETGIPKSKLLREAL 36 (44)
T ss_pred EecCHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 355789999999999999998877776665
No 27
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=63.56 E-value=35 Score=25.74 Aligned_cols=72 Identities=10% Similarity=0.186 Sum_probs=52.7
Q ss_pred cCCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec-cccccc
Q psy5380 7 QGWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS-PISMAL 78 (129)
Q Consensus 7 ~G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s-pL~~G~ 78 (129)
.|+| -..|++..+.....+..+.+++.|...+.++-..|+-.++......+...++..++.++.|. |...|.
T Consensus 71 ~grvpviaG~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~ 144 (299)
T COG0329 71 GGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGV 144 (299)
T ss_pred CCCCcEEEecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 4666 67789888888888888889998865566666667766654333345667888899999996 776664
No 28
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=61.34 E-value=10 Score=23.73 Aligned_cols=55 Identities=16% Similarity=0.059 Sum_probs=34.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 16 SRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 16 Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
|.++.+.+.++.+. ...+++|+....+-=-..-..+..+|+.+|+.+++-+. .+|
T Consensus 3 ~~~~~~~~~~li~~------~a~d~~~~~~~~~GGit~~~~i~~~A~~~gi~~~~h~~-~~~ 57 (111)
T PF13378_consen 3 SLFSLHDFRRLIEA------GAVDIVQIDPTRCGGITEALRIAALAEAHGIPVMPHSM-ESG 57 (111)
T ss_dssp TSSSHHHHHHHHHT------TSCSEEEEBHHHHTSHHHHHHHHHHHHHTT-EEEEBSS-SSH
T ss_pred CCCCHHHHHHHHHc------CCCCEEEeCchhcCCHHHHHHHHHHHHHhCCCEEecCC-CCc
Confidence 55677777777763 34567777655431100123577899999999999886 554
No 29
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=61.17 E-value=26 Score=22.94 Aligned_cols=61 Identities=15% Similarity=0.026 Sum_probs=39.0
Q ss_pred EEEe---cCCCHHHHHHHHHHH-HhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccc
Q psy5380 12 YWGT---SRWSPVEIMEAYSNC-RQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPI 74 (129)
Q Consensus 12 ~iG~---Sn~~~~~~~~~~~~~-~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL 74 (129)
.+|+ .+.+++.+.++.+.+ ..+|+ .+..+-.--++-... .|..+++.+++.|+.+..|++=
T Consensus 5 ~vGIGcr~~~~~e~i~~ai~~~L~~~~l-~~~si~~lasi~~K~-~E~~L~~~A~~lg~pl~~~~~~ 69 (126)
T PRK07027 5 ALGIGCRRGVPAEQIEAAIRAALAQRPL-ASADVRVVATLDLKA-DEAGLLALCARHGWPLRAFSAA 69 (126)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHHcCC-CHHHhheeEehhhhc-CCHHHHHHHHHhCCCeEEeCHH
Confidence 4555 356788887776554 44443 444444444443333 3678999999999999998553
No 30
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=60.68 E-value=32 Score=25.59 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=42.6
Q ss_pred CCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHh-CCeeeee-cccccc
Q psy5380 8 GWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKI-GVGMMAW-SPISMA 77 (129)
Q Consensus 8 G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~-gi~~~~~-spL~~G 77 (129)
|++ -.+|++..+..+..+..+.+.+.|...+.+....|...+++...+-+...|+.. ++.++.| .|...|
T Consensus 69 ~~~~viagv~~~~~~~ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~P~~tg 141 (288)
T cd00954 69 GKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTG 141 (288)
T ss_pred CCCeEEeccCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeCccccC
Confidence 554 457998888888888888888888433333333343322221112234466777 8999999 565555
No 31
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=58.34 E-value=59 Score=23.93 Aligned_cols=15 Identities=0% Similarity=-0.039 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhCCC
Q psy5380 104 AVMGEVERVLDNKPA 118 (129)
Q Consensus 104 ~~~~~l~~la~~~~~ 118 (129)
.+++.++++......
T Consensus 119 ~lv~AlkaLkpil~~ 133 (272)
T COG4130 119 DLVEALKALKPILDE 133 (272)
T ss_pred HHHHHHHHhhHHHHH
Confidence 455556665554443
No 32
>PHA00617 ribbon-helix-helix domain containing protein
Probab=57.00 E-value=8.4 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.114 Sum_probs=25.2
Q ss_pred cccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 99 PKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 99 ~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
-.+++++.++++++++..|.+...+..-||
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI 73 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREAL 73 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 356889999999999999998777777665
No 33
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=56.29 E-value=41 Score=25.42 Aligned_cols=70 Identities=7% Similarity=0.231 Sum_probs=44.3
Q ss_pred CCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHh-CCeeeee-cccccc
Q psy5380 8 GWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKI-GVGMMAW-SPISMA 77 (129)
Q Consensus 8 G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~-gi~~~~~-spL~~G 77 (129)
|++ -.+|++..+..+..+..+.+.+.|...+.+....|...+++..-+-+-..|+.. ++.++.| .|-..|
T Consensus 76 grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg 148 (309)
T cd00952 76 GRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFK 148 (309)
T ss_pred CCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcC
Confidence 443 568999888888888888888888544444444454443321112234456677 6999999 665545
No 34
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=55.70 E-value=60 Score=26.22 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=44.5
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHHHHh-cCCCC-ceEecccccccccchhhccHHHHHHHhCCeeeeec
Q psy5380 4 AINQGWIMYWGTSRWSPVEIMEAYSNCRQ-FNCAT-PIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 4 l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~-~g~~~-~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
+-+.|-...+|....+++++++.++..+. .+..+ +-++-+ .+.-+... +.++++.|.++||.++..|
T Consensus 39 Vs~AGgLG~lgag~l~~e~l~~~I~~ir~~~~~~p~fGVNL~-~~~~~~~~-e~~~v~l~l~~~V~~veas 107 (444)
T TIGR02814 39 MGRAGILGFFGAGGLPLEEVEQAIHRIQQALPGGPAYGVNLI-HSPSDPAL-EWGLVDLLLRHGVRIVEAS 107 (444)
T ss_pred HHhCCceeeeCCCCCCHHHHHHHHHHHHHhcCCCCceEEEec-ccCCCccc-HHHHHHHHHHcCCCEEEec
Confidence 44678889999999999999988877764 22112 444332 22222221 4567889999999887654
No 35
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=54.33 E-value=48 Score=24.78 Aligned_cols=70 Identities=13% Similarity=0.136 Sum_probs=41.5
Q ss_pred CCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHh-CCeeeee-cccccc
Q psy5380 8 GWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKI-GVGMMAW-SPISMA 77 (129)
Q Consensus 8 G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~-gi~~~~~-spL~~G 77 (129)
|++ -.+|++..+..+..+..+.+++.|...+.+....|...+++..-.-+.+.|... ++.++.| .|...|
T Consensus 69 ~~~pvi~gv~~~~t~~~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg 141 (290)
T TIGR00683 69 DQIALIAQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTG 141 (290)
T ss_pred CCCcEEEecCCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccc
Confidence 543 457888778888888888888888544444444444433221111223445555 6899988 464444
No 36
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=54.25 E-value=58 Score=24.47 Aligned_cols=59 Identities=7% Similarity=-0.009 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEecccccc---------cccch--hhccHHHHHHHhCCeeeeeccccc
Q psy5380 17 RWSPVEIMEAYSNCRQFNCATPIIEQTEYHM---------FCRDK--AELYMPELYNKIGVGMMAWSPISM 76 (129)
Q Consensus 17 n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l---------~~~~~--~e~~~~~~~~~~gi~~~~~spL~~ 76 (129)
..+.+...+..++|.++|+ ..+.+-.-++- ....+ .-.++.+++++.||+++.|.--..
T Consensus 28 g~~t~~~k~yIDfAa~~G~-eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~~~~~ 97 (273)
T PF10566_consen 28 GATTETQKRYIDFAAEMGI-EYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWYHSET 97 (273)
T ss_dssp SSSHHHHHHHHHHHHHTT--SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEEECCH
T ss_pred CCCHHHHHHHHHHHHHcCC-CEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4578899999999999996 44544444431 11111 134689999999999999866544
No 37
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=54.24 E-value=33 Score=28.45 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 21 VEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
..+++..+..+.+|. ++++.=++|.. |.+.+-..+.++|++.|+.++.-..++.|
T Consensus 359 ~NL~RHIenvr~FGv-PvVVAINKFd~-DTe~Ei~~I~~~c~e~Gv~va~~~~~~~G 413 (557)
T PRK13505 359 ANLERHIENIRKFGV-PVVVAINKFVT-DTDAEIAALKELCEELGVEVALSEVWAKG 413 (557)
T ss_pred HHHHHHHHHHHHcCC-CEEEEEeCCCC-CCHHHHHHHHHHHHHcCCCEEEecccccC
Confidence 566778888888885 55555556655 44322345789999999999855555444
No 38
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=53.40 E-value=28 Score=28.62 Aligned_cols=100 Identities=11% Similarity=0.101 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc-----cCCCccCCCCCCCCCcc
Q psy5380 21 VEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL-----ISGKIEEFTVPVYPKSS 95 (129)
Q Consensus 21 ~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~-----Ltgk~~~~~~~~~~~~~ 95 (129)
..+.+-.+..+++|+ ++++.-++|. -|.+.+-+.+.++|++.|+.+..-...+.|= |..++.. .....++++
T Consensus 343 ~NL~~Hi~n~~~fg~-p~VVaiN~F~-~Dt~~Ei~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~-a~e~~s~fk 419 (524)
T cd00477 343 ANLRKHIENIKKFGV-PVVVAINKFS-TDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIE-ACEQPSEFK 419 (524)
T ss_pred HHHHHHHHHHHHcCC-CeEEEecCCC-CCCHHHHHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHH-HhcCCCCCc
Confidence 445566677777885 5555455555 3444323347889999999888776666651 2222211 000011222
Q ss_pred ccccccCHHHHHHHHHHHhh-CCCCcchhh
Q psy5380 96 KLVPKLNAAVMGEVERVLDN-KPARPPMVS 124 (129)
Q Consensus 96 ~~~~~~~~~~~~~l~~la~~-~~~~~~~la 124 (129)
..++ ....+.++++.|+.+ ++......+
T Consensus 420 ~LY~-~~~si~eKIetIAk~IYGA~~V~~S 448 (524)
T cd00477 420 FLYD-LEDPLEDKIETIAKKIYGADGVELS 448 (524)
T ss_pred cccC-CCCCHHHHHHHHHHHccCCCceeEC
Confidence 2221 134577778888765 555444333
No 39
>PHA01748 hypothetical protein
Probab=53.26 E-value=12 Score=21.32 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=22.1
Q ss_pred ccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 100 KLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 100 ~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
+.++++++.++++++..|.+-..+...|+
T Consensus 8 rLp~el~~eld~~a~~~g~~RSE~Ir~Ai 36 (60)
T PHA01748 8 KIEEDLLELLDRYAIKHGLNRSEAIRKAI 36 (60)
T ss_pred ECCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 45788999999999999887666555554
No 40
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=53.21 E-value=55 Score=24.26 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=45.5
Q ss_pred CCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec-ccccc
Q psy5380 8 GWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS-PISMA 77 (129)
Q Consensus 8 G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s-pL~~G 77 (129)
|++ -.+|++..+..+..+..+.+++.|...+.+..-.|...+++...+-+...|...++.++.|. |-..|
T Consensus 69 ~~~~vi~gv~~~st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~~pi~iYn~P~~tg 140 (289)
T PF00701_consen 69 GRVPVIAGVGANSTEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATDLPIIIYNNPARTG 140 (289)
T ss_dssp TSSEEEEEEESSSHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSSSEEEEEEBHHHHS
T ss_pred CceEEEecCcchhHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcCCCEEEEECCCccc
Confidence 454 67899999999999999999988843333344444444333222234556777789999994 74545
No 41
>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins. Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.
Probab=52.07 E-value=5.6 Score=24.47 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=12.7
Q ss_pred hHHHHcCCccEEE-ec
Q psy5380 2 NHAINQGWIMYWG-TS 16 (129)
Q Consensus 2 ~~l~~~G~ir~iG-~S 16 (129)
.+|++.|.||++| ++
T Consensus 56 QdLv~~gfir~~g~vG 71 (84)
T cd04436 56 QDLLNQGFLRLVGGVG 71 (84)
T ss_pred HHHHhCchHHHhcccC
Confidence 4789999999999 54
No 42
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=51.92 E-value=46 Score=23.70 Aligned_cols=70 Identities=13% Similarity=-0.001 Sum_probs=40.6
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
+|.+...+. ..+-|.++.+.+.++.+. ...+++|+..+.+---..-..+..+|+++|+.++..+.+.+|+
T Consensus 139 ~L~~~~~~pIa~dEs~~~~~~~~~~~~~------~~~d~~~~k~~~~GGi~~~~~i~~~a~~~gi~~~~~~~~~s~i 209 (229)
T cd00308 139 ALRRRTGIPIAADESVTTVDDALEALEL------GAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMVHGTLESSI 209 (229)
T ss_pred HHHhhCCCCEEeCCCCCCHHHHHHHHHc------CCCCEEecCccccCCHHHHHHHHHHHHHcCCEEeecCCCCCHH
Confidence 445554443 445566666666555442 2466777766553210001356778999999999877665543
No 43
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=51.00 E-value=27 Score=21.26 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.9
Q ss_pred ccHHHHHHHhCCeeeeeccccccccC
Q psy5380 55 LYMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 55 ~~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
..+.+.++++||.++-..||++-+..
T Consensus 30 ~~I~~~A~e~~VPi~~~~~LAr~L~~ 55 (82)
T TIGR00789 30 ERIIEIAKKHGIPIVEDPDLVDVLLK 55 (82)
T ss_pred HHHHHHHHHcCCCEEeCHHHHHHHHh
Confidence 35788999999999999999999863
No 44
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=49.56 E-value=57 Score=23.96 Aligned_cols=66 Identities=9% Similarity=0.095 Sum_probs=39.7
Q ss_pred cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccc-cccccchhhccHHHHHHHhCCeeeee-cccccc
Q psy5380 11 MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEY-HMFCRDKAELYMPELYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 11 r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~-~l~~~~~~e~~~~~~~~~~gi~~~~~-spL~~G 77 (129)
-.+|++..+.....+..+.+.+.|. .-+.+..+| ...+++...+.+...++..++.++.| .|...|
T Consensus 69 vi~gv~~~~~~~~i~~a~~a~~~Ga-d~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg 136 (281)
T cd00408 69 VIAGVGANSTREAIELARHAEEAGA-DGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTG 136 (281)
T ss_pred EEEecCCccHHHHHHHHHHHHHcCC-CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccC
Confidence 4688888888877777778888784 444444444 33222211122344556678999888 555444
No 45
>PRK05788 cobalamin biosynthesis protein CbiG; Validated
Probab=49.02 E-value=45 Score=25.52 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=39.8
Q ss_pred cEEEe---cCCCHHHHHHHHHHHH-hcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccc
Q psy5380 11 MYWGT---SRWSPVEIMEAYSNCR-QFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPI 74 (129)
Q Consensus 11 r~iG~---Sn~~~~~~~~~~~~~~-~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL 74 (129)
-.+|+ .+.+.+.+.++.+.+. .+| ..+..+-.--++-... .|.++++.+++.|+.+..|++=
T Consensus 195 l~vGIGcrrg~~~e~i~~ai~~~L~~~~-i~~~~i~~iatid~K~-~E~gL~~~a~~lg~pl~~~~~~ 260 (315)
T PRK05788 195 VVLGIGCRKGVSAEEIAEAVERALEALN-IDPRAVKAIASITLKK-DEPGLLQLAEELGVPFITFSKE 260 (315)
T ss_pred EEEeeccCCCCCHHHHHHHHHHHHHHcC-CCHHHccEEeeeeccC-CCHHHHHHHHHhCCCeEEeCHH
Confidence 34554 4678888888876654 334 2334333333333333 3678999999999999998763
No 46
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=47.46 E-value=61 Score=24.18 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=42.4
Q ss_pred CCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEeccccc-ccccchhhccHHHHHHHhCCeeeee-cccccc
Q psy5380 8 GWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYH-MFCRDKAELYMPELYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 8 G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~-l~~~~~~e~~~~~~~~~~gi~~~~~-spL~~G 77 (129)
|++ -..|++..+..+..+..+.+.+.|. .-+.+..+|. ..+++...+-+.+.+...++.++.| .|-..|
T Consensus 72 ~~~~viagvg~~~t~~ai~~a~~a~~~Ga-d~v~v~~P~y~~~~~~~l~~~f~~va~a~~lPv~iYn~P~~tg 143 (293)
T PRK04147 72 GKVKLIAQVGSVNTAEAQELAKYATELGY-DAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTG 143 (293)
T ss_pred CCCCEEecCCCCCHHHHHHHHHHHHHcCC-CEEEEeCCcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCchhhc
Confidence 443 5778888888888888888888884 4444445543 3222211122344566678999999 465555
No 47
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=47.33 E-value=16 Score=22.41 Aligned_cols=29 Identities=7% Similarity=0.253 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 100 KLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 100 ~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
++++++..+|++||+....+..-++.-||
T Consensus 8 rl~del~~rLd~lAe~~~rsrs~i~~~Ai 36 (83)
T COG3905 8 RLDDELKRRLDELAEATDRSRSYIAEQAI 36 (83)
T ss_pred ecCHHHHHHHHHHHHHhccChhhhHHHHH
Confidence 56789999999999998888777766554
No 48
>PF01619 Pro_dh: Proline dehydrogenase; InterPro: IPR002872 The proline oxidase/dehydrogenase 1.5.99.8 from EC is responsible for the first step in the conversion of proline to glutamate for use as a carbon and nitrogen source. The enzyme requires FAD as a cofactor, and is induced by proline.; GO: 0004657 proline dehydrogenase activity, 0006537 glutamate biosynthetic process, 0006562 proline catabolic process, 0055114 oxidation-reduction process; PDB: 2G37_A 2EKG_B 4F9I_B 3HAZ_A 2FZM_A 3E2Q_A 3E2S_A 2FZN_A 1K87_A 1TJ2_A ....
Probab=47.21 E-value=64 Score=24.40 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=41.2
Q ss_pred cEEEecCCCHHHHHHHHHHHHhcCCCC---ceEecccccccccchhhccHHHHHHHhCCeeeeecccc
Q psy5380 11 MYWGTSRWSPVEIMEAYSNCRQFNCAT---PIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPIS 75 (129)
Q Consensus 11 r~iG~Sn~~~~~~~~~~~~~~~~g~~~---~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~ 75 (129)
-++++..|+...+..+.+.+...|..+ -+..|.-|.+-+ ++-....+.|..+.-|.|.+
T Consensus 222 ~~~~vATHn~~si~~a~~l~~~~~~~~~~~~~efq~L~Gm~d------~l~~~L~~~g~~v~~YvP~G 283 (313)
T PF01619_consen 222 VYPMVATHNERSIALALELAEELGIPPNDDRVEFQQLYGMAD------DLSRALAQAGYRVRKYVPYG 283 (313)
T ss_dssp EEEEEE---HHHHHHHHHHHHCTT-GG--GGEEEEEETTSSH------HHHHHHHHHTSEEEEEEEES
T ss_pred eeeeccCCCHHHHHHHHHHHHHcCCCcccccEEeehhccCCH------HHHHHHHhCCCCEEEEEecC
Confidence 689999999999999999999888542 344566666532 34456677888888888887
No 49
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=45.70 E-value=57 Score=22.60 Aligned_cols=48 Identities=13% Similarity=0.132 Sum_probs=36.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhC
Q psy5380 16 SRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIG 65 (129)
Q Consensus 16 Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~g 65 (129)
+..+.++++++.+.....| ..-+++-.-||..|+.. |..+.+++++.|
T Consensus 129 ~~ld~~~v~~~~~~l~~~g-v~avAV~~~fS~~np~h-E~~v~eii~e~g 176 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKG-VEAVAVSLLFSYRNPEH-EQRVAEIIREEG 176 (176)
T ss_pred cCCCHHHHHHHHHHHHhCC-CCEEEEECccCCCCHHH-HHHHHHHHHhcC
Confidence 3456788888888887777 57777888899998875 666777777765
No 50
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=45.60 E-value=1.1e+02 Score=22.56 Aligned_cols=51 Identities=6% Similarity=0.083 Sum_probs=33.7
Q ss_pred HHHHHhcCCCCceEe--cccccccccchh--hccHHHHHHHhCCeeeeeccccccc
Q psy5380 27 YSNCRQFNCATPIIE--QTEYHMFCRDKA--ELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 27 ~~~~~~~g~~~~~~~--q~~~~l~~~~~~--e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
...++++|+ .++++ -.+||-|+.... .+++.++++..|-.-....||..|-
T Consensus 55 ka~Aek~Gl-~IvSINAlypFn~wt~~~~a~a~~la~yA~acGA~aLvlcPlNd~s 109 (272)
T COG4130 55 KALAEKAGL-TIVSINALYPFNEWTEERVAEARGLADYAAACGAKALVLCPLNDGS 109 (272)
T ss_pred HHHHHHcCc-EEEEeeccccccccChHHHHHHHHHHHHHHhcCCceEEEEeccCCC
Confidence 334556664 44443 237777775421 3468889999999999999998863
No 51
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=45.03 E-value=55 Score=24.80 Aligned_cols=70 Identities=6% Similarity=-0.136 Sum_probs=43.7
Q ss_pred HHHHcCCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc
Q psy5380 3 HAINQGWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 3 ~l~~~G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
+|++.-.+ -..|-|.++.+++..+.+. ...+++|...+.+---..-..+...|+.+|+.++.-+.+.+|+
T Consensus 217 ~l~~~~~~pia~dEs~~~~~~~~~~~~~------~~~dvi~~d~~~~GGit~~~~~~~~A~~~gi~~~~~~~~es~i 287 (324)
T TIGR01928 217 ELAKGTITPICLDESITSLDDARNLIEL------GNVKVINIKPGRLGGLTEVQKAIETCREHGAKVWIGGMLETGI 287 (324)
T ss_pred HHHhhcCCCEeeCCCcCCHHHHHHHHHc------CCCCEEEeCcchhcCHHHHHHHHHHHHHcCCeEEEcceEcccH
Confidence 34444333 3567788888887776653 2466777766553210012357789999999999877666664
No 52
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=44.03 E-value=35 Score=26.59 Aligned_cols=83 Identities=8% Similarity=0.145 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccCCCccCCCCCCCCCccccc
Q psy5380 19 SPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLV 98 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~~~~~~~~~~~~~~~ 98 (129)
+.+.+++-.......=...+...|.++..+ +.++..+++.||.++.|.|...==+...+....
T Consensus 225 d~ekL~~~s~~~~~~~l~~f~~s~~q~~F~------e~~L~~ake~~I~~vl~~P~V~~~~~~~~~~~~----------- 287 (345)
T PF07611_consen 225 DPEKLEKSSERIFKWYLSSFTFSETQFFFL------EKFLKLAKENGIPVVLWWPKVSPPYEKLYKELK----------- 287 (345)
T ss_pred CHHHHHHHHHHHHHHhhcCCCCChhHHHHH------HHHHHHHHHcCCcEEEEEeccCHHHHHHHHhhc-----------
Confidence 445554433333222234566667776664 346789999999999999986532333222211
Q ss_pred cccCHHHHHHHHHHHhhCCCCc
Q psy5380 99 PKLNAAVMGEVERVLDNKPARP 120 (129)
Q Consensus 99 ~~~~~~~~~~l~~la~~~~~~~ 120 (129)
..+.....++++++..++.-
T Consensus 288 --~~~~w~~~i~~l~~~~~~~~ 307 (345)
T PF07611_consen 288 --VYESWWPIIKKLAKEYGIPF 307 (345)
T ss_pred --hhhHHHHHHHHHHhcCCceE
Confidence 12344566777777777643
No 53
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=43.88 E-value=63 Score=23.42 Aligned_cols=60 Identities=8% Similarity=0.027 Sum_probs=36.2
Q ss_pred EEecCCCHH--HHHHHHHHHHhcCCCCceEeccccc----c---cccchhhccHHHHHHHhCCeeeeeccccc
Q psy5380 13 WGTSRWSPV--EIMEAYSNCRQFNCATPIIEQTEYH----M---FCRDKAELYMPELYNKIGVGMMAWSPISM 76 (129)
Q Consensus 13 iG~Sn~~~~--~~~~~~~~~~~~g~~~~~~~q~~~~----l---~~~~~~e~~~~~~~~~~gi~~~~~spL~~ 76 (129)
+|+|.+... .+.+..+.+.+.|. ..+++..+ . +... .-.++.+.++++|+.+.++.|...
T Consensus 3 lg~~t~~~~~~~l~~~l~~~~~~G~---~~vEl~~~~~~~~~~~~~~~-~~~~l~~~~~~~gl~v~s~~~~~~ 71 (275)
T PRK09856 3 TGMFTCGHQRLPIEHAFRDASELGY---DGIEIWGGRPHAFAPDLKAG-GIKQIKALAQTYQMPIIGYTPETN 71 (275)
T ss_pred eeeeehhheeCCHHHHHHHHHHcCC---CEEEEccCCccccccccCch-HHHHHHHHHHHcCCeEEEecCccc
Confidence 566665554 36777777777674 44443211 1 1111 124577789999999998877543
No 54
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=43.26 E-value=33 Score=28.58 Aligned_cols=100 Identities=8% Similarity=0.053 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc-----cCCCccCCCCCCCCCcccc
Q psy5380 23 IMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL-----ISGKIEEFTVPVYPKSSKL 97 (129)
Q Consensus 23 ~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~-----Ltgk~~~~~~~~~~~~~~~ 97 (129)
+.+-.+..+.+|. ++++.=++|.- |.+.+-+.+.++|++.|+.+..-...+.|= |..+....-. ..++++..
T Consensus 390 L~~Hi~n~~~fg~-pvVVaiN~F~~-Dt~~Ei~~l~~~~~~~g~~~~v~~~wa~GGeGa~eLA~~Vv~a~e-~~s~fk~L 466 (587)
T PRK13507 390 LLHHIGTVKKSGI-NPVVCINAFYT-DTHAEIAIVRRLAEQAGARVAVSRHWEKGGEGALELADAVIDACN-EPNDFKFL 466 (587)
T ss_pred HHHHHHHHHHcCC-CeEEEeCCCCC-CCHHHHHHHHHHHHHcCCCEEEechhhccchhHHHHHHHHHHHhh-CcCCCccc
Confidence 4555566677885 44444344443 333322346789999999888777776662 2222111000 01122222
Q ss_pred ccccCHHHHHHHHHHHhh-CCCCcchhhhc
Q psy5380 98 VPKLNAAVMGEVERVLDN-KPARPPMVSTL 126 (129)
Q Consensus 98 ~~~~~~~~~~~l~~la~~-~~~~~~~la~~ 126 (129)
++ .+..+.++++.||.+ ++......+..
T Consensus 467 Yd-~~~sI~EKIetIAkeIYGAdgVe~S~~ 495 (587)
T PRK13507 467 YP-LEMPLRERIETIAREVYGADGVSYTPE 495 (587)
T ss_pred CC-CCCCHHHHHHHHHHHccCCCceeECHH
Confidence 22 134577788888776 56555444433
No 55
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=43.26 E-value=75 Score=23.57 Aligned_cols=66 Identities=12% Similarity=0.095 Sum_probs=39.8
Q ss_pred cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccc-cccccchhhccHHHHHHHhCCeeeee-cccccc
Q psy5380 11 MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEY-HMFCRDKAELYMPELYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 11 r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~-~l~~~~~~e~~~~~~~~~~gi~~~~~-spL~~G 77 (129)
-..|++..+.....+..+.+++.|. .-+.+..+| ...+++...+-+.+.|...++.++.| .|-..|
T Consensus 73 vi~gv~~~~~~~~i~~a~~a~~~G~-d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~~pv~lYn~P~~~g 140 (292)
T PRK03170 73 VIAGTGSNSTAEAIELTKFAEKAGA-DGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTG 140 (292)
T ss_pred EEeecCCchHHHHHHHHHHHHHcCC-CEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccC
Confidence 4688888778877777788888774 444454444 33222211122344566678999998 454444
No 56
>PF14370 Topo_C_assoc: C-terminal topoisomerase domain; PDB: 1TL8_A 1K4T_A 1A36_A 1RR8_C 1T8I_A 1SC7_A 1EJ9_A 1LPQ_A 1RRJ_A 1A31_A ....
Probab=43.22 E-value=11 Score=22.34 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=15.6
Q ss_pred cccccccccchhhccHHHHHHHhCCeee
Q psy5380 42 QTEYHMFCRDKAELYMPELYNKIGVGMM 69 (129)
Q Consensus 42 q~~~~l~~~~~~e~~~~~~~~~~gi~~~ 69 (129)
-...|++|+++ .+.+|++++|.+-
T Consensus 25 TSKiNYlDPRI----tvAWck~~~VPie 48 (71)
T PF14370_consen 25 TSKINYLDPRI----TVAWCKRHEVPIE 48 (71)
T ss_dssp HHHHHTS-HHH----HHHHHHHTT--GG
T ss_pred hhhhhhcCcHH----HHHHHHHhCCcHH
Confidence 44567888876 4779999998653
No 57
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=42.68 E-value=9.7 Score=30.81 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=20.1
Q ss_pred CCccEEEecCCCHHHHHHHHHHHH
Q psy5380 8 GWIMYWGTSRWSPVEIMEAYSNCR 31 (129)
Q Consensus 8 G~ir~iG~Sn~~~~~~~~~~~~~~ 31 (129)
+.+|++|+..++++.+.++....+
T Consensus 264 ~~Ar~fG~ll~d~d~i~eaa~~~~ 287 (492)
T TIGR01660 264 GRIRYLGVLLYDADKIEEAASTEN 287 (492)
T ss_pred hhhhhhhhhccCcHHHHHHHhccc
Confidence 578999999999999988877643
No 58
>COG1678 Putative transcriptional regulator [Transcription]
Probab=42.52 E-value=26 Score=25.02 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=43.2
Q ss_pred CCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecc
Q psy5380 8 GWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 8 G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~sp 73 (129)
+...++|.|.|.+-|+++=.+ .++| +++=..+-=+|+..+ |+..-+..++.||.....|+
T Consensus 130 ~~l~~lGYagW~~GQLE~Ei~---~n~W--L~~pA~~~~lF~~~~-edrw~~al~~lGi~~~~lst 189 (194)
T COG1678 130 KALVALGYAGWAAGQLEEEIE---DNDW--LTVPADPEILFDTPP-EDRWARALRRLGIDLALLST 189 (194)
T ss_pred ceEEEEEecccccchhHHHHh---hCCE--EEecCCHHHhcCCCH-HHHHHHHHHHcCCCHHHcCC
Confidence 356789999999999976544 3445 565555556667665 66667788899998877766
No 59
>KOG0629|consensus
Probab=41.00 E-value=83 Score=25.54 Aligned_cols=61 Identities=10% Similarity=0.012 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEec----ccccccccchhhccHHHHHHHhCCeeeeeccccccccCC
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQ----TEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISG 81 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q----~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltg 81 (129)
+-++.+++-+-.++..|+.|+.++- .-|..+|.- ..+.+.|+++++=+..=..+++|+|--
T Consensus 235 m~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL---~~iadiC~k~~lWmHvDAAwGGglLmS 299 (510)
T KOG0629|consen 235 MIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDL---NGIADICEKHKLWMHVDAAWGGGLLMS 299 (510)
T ss_pred cchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcH---HHHHHHHHhcCEEEEeecccccccccC
Confidence 3577888877778888887776643 356666643 468889999999999999999997653
No 60
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.31 E-value=77 Score=23.78 Aligned_cols=69 Identities=9% Similarity=-0.045 Sum_probs=38.0
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+|.+.-.|. ..|=+-++.+.+.++.+. ...+.+|..-+.+---..-..+..+|+++|+.++..+-+..|
T Consensus 222 ~L~~~~~ipIa~~E~~~~~~~~~~~~~~------~~~d~v~~~~~~~GGi~~~~~~~~~a~~~gi~~~~~~~~~~~ 291 (316)
T cd03319 222 YLRDKSPLPIMADESCFSAADAARLAGG------GAYDGINIKLMKTGGLTEALRIADLARAAGLKVMVGCMVESS 291 (316)
T ss_pred HHHhcCCCCEEEeCCCCCHHHHHHHHhc------CCCCEEEEeccccCCHHHHHHHHHHHHHcCCCEEEECchhhH
Confidence 344444443 345566677776666553 245666665444210000134677889999988875544444
No 61
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=40.17 E-value=98 Score=23.42 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
-++.++.++.+..++++ .+..+.+.++|- ..+-..+++.|+.++.-.||+.+.
T Consensus 236 ps~~~l~~l~~~ik~~~-v~~If~e~~~~~-------~~~~~la~e~g~~v~~ldpl~~~~ 288 (311)
T PRK09545 236 PGAQRLHEIRTQLVEQK-ATCVFAEPQFRP-------AVIESVAKGTSVRMGTLDPLGTNI 288 (311)
T ss_pred CCHHHHHHHHHHHHHcC-CCEEEecCCCCh-------HHHHHHHHhcCCeEEEeccccccc
Confidence 36677777777777666 466666665544 122335677777776666776654
No 62
>KOG4175|consensus
Probab=40.12 E-value=72 Score=23.25 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchh-----------------------h-ccHHHHHHHhCCeeee
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKA-----------------------E-LYMPELYNKIGVGMMA 70 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~-----------------------e-~~~~~~~~~~gi~~~~ 70 (129)
.+...+-+....++..|..-|..+-.-||++-+... | ..+...|+++||.+++
T Consensus 77 ~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 77 TTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVP 153 (268)
T ss_pred CcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEE
Confidence 344556666666666666667777777777654321 1 2356778888888776
No 63
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=40.11 E-value=1.1e+02 Score=23.73 Aligned_cols=78 Identities=17% Similarity=0.112 Sum_probs=48.9
Q ss_pred HHcC-CccEEEec---------CCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCC-eeeeecc
Q psy5380 5 INQG-WIMYWGTS---------RWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGV-GMMAWSP 73 (129)
Q Consensus 5 ~~~G-~ir~iG~S---------n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi-~~~~~sp 73 (129)
.+.| -.-|+|.. ||+.++++++.+++.++|..-.+.+-.-...-.... -...++.+.+.|+ ++|+.-|
T Consensus 23 i~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~-~~~~l~~l~e~GvDaviv~Dp 101 (347)
T COG0826 23 IAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELET-LERYLDRLVELGVDAVIVADP 101 (347)
T ss_pred HHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhH-HHHHHHHHHHcCCCEEEEcCH
Confidence 4455 45677765 899999999999999999533333322222111110 0245667788887 7777788
Q ss_pred ccccccCCCc
Q psy5380 74 ISMALISGKI 83 (129)
Q Consensus 74 L~~G~Ltgk~ 83 (129)
..-.++...+
T Consensus 102 g~i~l~~e~~ 111 (347)
T COG0826 102 GLIMLARERG 111 (347)
T ss_pred HHHHHHHHhC
Confidence 7777766444
No 64
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=39.99 E-value=82 Score=22.96 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=32.6
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 12 YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 12 ~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
..|=|-++.+++.++.+. ...+.+|+..+.+---..-..+...|+.+|+.++.-+.+.+|
T Consensus 184 a~dE~~~~~~~~~~~i~~------~~~d~v~~k~~~~GGi~~~~~~~~~A~~~gi~~~~~~~~~s~ 243 (265)
T cd03315 184 MADESAFTPHDAFRELAL------GAADAVNIKTAKTGGLTKAQRVLAVAEALGLPVMVGSMIESG 243 (265)
T ss_pred EECCCCCCHHHHHHHHHh------CCCCEEEEecccccCHHHHHHHHHHHHHcCCcEEecCccchH
Confidence 344455666666655442 235566665544321000124667788888888776555444
No 65
>KOG1185|consensus
Probab=39.68 E-value=96 Score=25.60 Aligned_cols=62 Identities=13% Similarity=0.230 Sum_probs=45.4
Q ss_pred ecCCCHHHHHHHHHHHHhcCCCCceE--ecccccccccchhhccHHHHHHHhCCeeeeeccccccccCCCc
Q psy5380 15 TSRWSPVEIMEAYSNCRQFNCATPII--EQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKI 83 (129)
Q Consensus 15 ~Sn~~~~~~~~~~~~~~~~g~~~~~~--~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk~ 83 (129)
++.-++.+++++.++.++.-. ++.+ -|.-|+. . |+++..+-+..|+.+++ .|++.|+|...+
T Consensus 199 i~~p~~s~i~~av~llk~AKr-PLlvvGkgAa~~~---a--e~~l~~~Ve~~glPflp-tpMgKGll~d~h 262 (571)
T KOG1185|consen 199 IPGPPPSQIQKAVQLLKSAKR-PLLVVGKGAAYAP---A--EDQLRKFVETTGLPFLP-TPMGKGLLPDNH 262 (571)
T ss_pred CCCCCHHHHHHHHHHHHhcCC-cEEEEecccccCc---c--HHHHHHHHHhcCCCccc-CcccccCCCCCC
Confidence 455678899999998876652 3333 2555555 2 56788899999999988 799999998753
No 66
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=39.26 E-value=86 Score=23.38 Aligned_cols=60 Identities=7% Similarity=0.109 Sum_probs=36.6
Q ss_pred cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccc-cccccchhhccHHHHHHHhCCeeeeec
Q psy5380 11 MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEY-HMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 11 r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~-~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
-.+|++. +..+..+..+.+.+.|. .-..+..+| ...+++...+.+...++..++.++.|.
T Consensus 72 vi~gv~~-~t~~~i~~a~~a~~~Ga-d~v~~~pP~y~~~~~~~i~~~f~~v~~~~~~pi~lYn 132 (289)
T cd00951 72 VLAGAGY-GTATAIAYAQAAEKAGA-DGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYN 132 (289)
T ss_pred EEEecCC-CHHHHHHHHHHHHHhCC-CEEEECCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEe
Confidence 3567775 77777777888888884 444555554 333222111223445666789999997
No 67
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=39.25 E-value=92 Score=19.84 Aligned_cols=44 Identities=11% Similarity=0.168 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeee
Q psy5380 19 SPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMA 70 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~ 70 (129)
++..+.++.+.+...| .+-+.+|.. ..++++.+.|+++|+.++.
T Consensus 64 ~~~~~~~~v~~~~~~g-~~~v~~~~g-------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 64 PPDKVPEIVDEAAALG-VKAVWLQPG-------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp -HHHHHHHHHHHHHHT--SEEEE-TT-------S--HHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHHHHHHcC-CCEEEEEcc-------hHHHHHHHHHHHcCCEEEe
Confidence 4566666666666666 466666665 1245788999999999883
No 68
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=38.69 E-value=1.6e+02 Score=21.60 Aligned_cols=80 Identities=10% Similarity=0.074 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccCCCccCCCCCCCCCccccc
Q psy5380 19 SPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLV 98 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~~~~~~~~~~~~~~~ 98 (129)
+-.|.......|++.|+ ..|.+++... ..+++...-+.|+-++.-+.-+.|+-. .+..
T Consensus 97 s~yqk~rve~lc~~lGl-------~~~~PLWg~d-~~ell~e~~~~Gf~~~Iv~Vsa~gL~~-~~lG------------- 154 (223)
T COG2102 97 SEYQKERVERLCEELGL-------KVYAPLWGRD-PEELLEEMVEAGFEAIIVAVSAEGLDE-SWLG------------- 154 (223)
T ss_pred hHHHHHHHHHHHHHhCC-------EEeecccCCC-HHHHHHHHHHcCCeEEEEEEeccCCCh-HHhC-------------
Confidence 34555555555665554 3455555443 345666667777777777776666432 1111
Q ss_pred cccCHHHHHHHHHHHhhCCCCc
Q psy5380 99 PKLNAAVMGEVERVLDNKPARP 120 (129)
Q Consensus 99 ~~~~~~~~~~l~~la~~~~~~~ 120 (129)
-+++.+..+.+..+.++.+..+
T Consensus 155 r~i~~~~~e~l~~l~~~ygi~~ 176 (223)
T COG2102 155 RRIDREFLEELKSLNRRYGIHP 176 (223)
T ss_pred CccCHHHHHHHHHHHHhcCCCc
Confidence 1345677888888888877654
No 69
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=38.64 E-value=84 Score=23.16 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=40.4
Q ss_pred ccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHH----HHHHhCCeeeee-cccccc
Q psy5380 10 IMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPE----LYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 10 ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~----~~~~~gi~~~~~-spL~~G 77 (129)
.-.+|++..+..+..+..+.+.+.|. .-+++..++..- .. ++++++ .++..++.++.| -|...|
T Consensus 71 ~vi~gv~~~~~~~~~~~a~~a~~~G~-d~v~~~~P~~~~-~~--~~~l~~~~~~ia~~~~~pi~lYn~P~~~g 139 (284)
T cd00950 71 PVIAGTGSNNTAEAIELTKRAEKAGA-DAALVVTPYYNK-PS--QEGLYAHFKAIAEATDLPVILYNVPGRTG 139 (284)
T ss_pred cEEeccCCccHHHHHHHHHHHHHcCC-CEEEEcccccCC-CC--HHHHHHHHHHHHhcCCCCEEEEEChhHhC
Confidence 45689998888888888888888883 444455444321 11 234443 455568999998 454344
No 70
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=38.56 E-value=31 Score=22.85 Aligned_cols=25 Identities=24% Similarity=0.143 Sum_probs=20.1
Q ss_pred cchhhccHHHHHHHhCCeeeeecccc
Q psy5380 50 RDKAELYMPELYNKIGVGMMAWSPIS 75 (129)
Q Consensus 50 ~~~~e~~~~~~~~~~gi~~~~~spL~ 75 (129)
++. -.++++.|++.||.+++|-.+.
T Consensus 43 ~Dl-lge~v~a~h~~Girv~ay~~~~ 67 (132)
T PF14871_consen 43 RDL-LGEQVEACHERGIRVPAYFDFS 67 (132)
T ss_pred cCH-HHHHHHHHHHCCCEEEEEEeee
Confidence 443 4578999999999999997765
No 71
>COG5625 Predicted transcription regulator containing HTH domain [Transcription]
Probab=38.09 E-value=49 Score=21.18 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=22.8
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHHHH
Q psy5380 2 NHAINQGWIMYWGTSRWSPVEIMEAYSN 29 (129)
Q Consensus 2 ~~l~~~G~ir~iG~Sn~~~~~~~~~~~~ 29 (129)
.++++.|||.||=...-++..++++.+.
T Consensus 68 relvqkgWvGYiya~~~P~k~leei~~~ 95 (113)
T COG5625 68 RELVQKGWVGYIYATTPPPKPLEEIEEE 95 (113)
T ss_pred HHHHhccceeeEecCCCCchHHHHHHHH
Confidence 3688999999998888888888877654
No 72
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=37.70 E-value=78 Score=25.05 Aligned_cols=69 Identities=7% Similarity=-0.044 Sum_probs=52.1
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 2 NHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 2 ~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
..|.+.|---..|+.|-.-...+.|... .-.++.+-+|+.+.....+ +.....++.++-+.+-.|++.+
T Consensus 284 ~~L~~~g~~v~~g~l~~~d~d~~~a~~l------~~~~~~~~pf~~i~~~~~~-~a~~~~~~~~~vi~~~~~~g~~ 352 (402)
T PRK09536 284 SRLVAAGASVSVGPVPEGDTAAETAARV------GCEAVTVPPFKPIEDSTRA-EATDLIIAADAVVAAGVAAAAR 352 (402)
T ss_pred HHHHHCCCeEEEecCcCcchhHHHHHHc------CCCEEeeCCCCCCCHHHHH-HHHHHHHhCCEEEECCCccCCC
Confidence 4578888888999988776666666554 2467788999999877633 4567888999999988888664
No 73
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=36.95 E-value=81 Score=23.30 Aligned_cols=64 Identities=8% Similarity=-0.133 Sum_probs=42.3
Q ss_pred HcCCccEEEe-cCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccc
Q psy5380 6 NQGWIMYWGT-SRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPIS 75 (129)
Q Consensus 6 ~~G~ir~iG~-Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~ 75 (129)
++|+. -+|+ ...+...+.|+... .| ..++++-.+++.++... -..++..|+..|+..+.+-|-.
T Consensus 15 ~~g~~-~~g~~~~~~sp~~~e~~a~---~G-~D~v~iD~EHg~~~~~~-~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 15 AAKQV-QIGCWSALANPITTEVLGL---AG-FDWLVLDGEHAPNDVST-FIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHh---cC-CCEEEEccccCCCCHHH-HHHHHHHHhhcCCCcEEECCCC
Confidence 34764 3443 33333444444443 34 57788899999998875 3457778999999999887653
No 74
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=36.52 E-value=33 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=26.8
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhC
Q psy5380 12 YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIG 65 (129)
Q Consensus 12 ~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~g 65 (129)
--|||||..+-+..++..... .-+++.....++.+++.+-++|
T Consensus 218 va~VSNWGayaL~a~l~~l~~-----------~~~~l~~~~~e~~~L~~lv~~G 260 (291)
T PF14336_consen 218 VAGVSNWGAYALAAALSLLSG-----------WKNLLPSPEEEEKLLEALVEAG 260 (291)
T ss_pred eCCCCChHHHHHHHHHHHhhc-----------chhhcCChHHHHHHHHHHHHcC
Confidence 358999999999888876531 1122222212445788877764
No 75
>PRK06298 type III secretion system protein; Validated
Probab=36.49 E-value=40 Score=26.30 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++..-||++.+..
T Consensus 294 ~Ir~iA~e~~VPiven~pLARaLy~ 318 (356)
T PRK06298 294 RIIAEAEKYGVPIMRNVPLAHQLLD 318 (356)
T ss_pred HHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 4678999999999999999999874
No 76
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=36.48 E-value=21 Score=20.40 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=14.1
Q ss_pred hCCeeeeeccccccccC
Q psy5380 64 IGVGMMAWSPISMALIS 80 (129)
Q Consensus 64 ~gi~~~~~spL~~G~Lt 80 (129)
-|...++||.+..|++.
T Consensus 10 VG~itl~ys~~~~GWl~ 26 (60)
T PF07026_consen 10 VGTITLPYSHFKNGWLM 26 (60)
T ss_pred EeEEEEEEEeccceeec
Confidence 36778899999999885
No 77
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=36.32 E-value=83 Score=24.72 Aligned_cols=66 Identities=9% Similarity=-0.044 Sum_probs=40.2
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPI 74 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL 74 (129)
+|++...+. ..|-|.++.+++.++.+. ...+++|...+..-=-..-..+...|+.+|+.+.+.+..
T Consensus 255 ~L~~~~~~PIa~dEs~~~~~~~~~~i~~------~avdil~~d~~~~GGit~~~kia~~A~~~gi~~~~h~~~ 321 (395)
T cd03323 255 EFRRATGLPLATNMIVTDFRQLGHAIQL------NAVDIPLADHHFWGGMRGSVRVAQVCETWGLGWGMHSNN 321 (395)
T ss_pred HHHHhcCCCEEcCCcccCHHHHHHHHHc------CCCcEEeeccccccCHHHHHHHHHHHHHcCCeEEEecCc
Confidence 455554443 556677777777766653 246677776654320000235778899999999887654
No 78
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=36.30 E-value=1.1e+02 Score=22.71 Aligned_cols=66 Identities=12% Similarity=0.154 Sum_probs=42.2
Q ss_pred CCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccH----HHHHHHhCCeeeee-cccccc
Q psy5380 8 GWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYM----PELYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 8 G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~----~~~~~~~gi~~~~~-spL~~G 77 (129)
|++ -..|++..+..+..+..+.+.+.| ..-+.+..+|..- .+ ++++ ...|+..++.++.| .|-..|
T Consensus 66 ~~~~vi~gv~~~s~~~~i~~a~~a~~~G-ad~v~v~pP~y~~-~~--~~~i~~~~~~i~~~~~~pi~lYn~P~~tg 137 (285)
T TIGR00674 66 GRVPVIAGTGSNATEEAISLTKFAEDVG-ADGFLVVTPYYNK-PT--QEGLYQHFKAIAEEVDLPIILYNVPSRTG 137 (285)
T ss_pred CCCeEEEeCCCccHHHHHHHHHHHHHcC-CCEEEEcCCcCCC-CC--HHHHHHHHHHHHhcCCCCEEEEECcHHhc
Confidence 543 568998888888888888888878 3555555555431 12 2334 44566678999988 454445
No 79
>PLN02759 Formate--tetrahydrofolate ligase
Probab=36.11 E-value=43 Score=28.18 Aligned_cols=102 Identities=9% Similarity=0.060 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhC-Ceeeeeccccccc-----cCCCccCCCCCCCCCccc
Q psy5380 23 IMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIG-VGMMAWSPISMAL-----ISGKIEEFTVPVYPKSSK 96 (129)
Q Consensus 23 ~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~g-i~~~~~spL~~G~-----Ltgk~~~~~~~~~~~~~~ 96 (129)
+..-.+..+.+|. ++++.-++|.- |.+.+-+.+.++|++.| +.+..-..++.|= |..+.........++++.
T Consensus 439 L~~Hi~n~~~fg~-pvVVaiN~F~~-Dt~~Ei~~v~~~~~~~ga~~~~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~ 516 (637)
T PLN02759 439 LARHIENTKSYGV-NVVVAINMFAT-DTEAELEAVRQAALAAGAFDAVLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKF 516 (637)
T ss_pred HHHHHHHHHHcCC-CeEEEecCCCC-CCHHHHHHHHHHHHHcCCCcEEEechhhcccHHHHHHHHHHHHHHhcCCCCccc
Confidence 3445555667775 44443334433 44332234678999999 5888777776662 221111100000112222
Q ss_pred cccccCHHHHHHHHHHHhh-CCCCcchhhhcc
Q psy5380 97 LVPKLNAAVMGEVERVLDN-KPARPPMVSTLA 127 (129)
Q Consensus 97 ~~~~~~~~~~~~l~~la~~-~~~~~~~la~~A 127 (129)
.++ ....+.++++.||.+ +|......+..|
T Consensus 517 LYd-~~~sI~eKIetIAkeIYGAd~VefS~~A 547 (637)
T PLN02759 517 LYP-LDISIKEKIEAIAKESYGADGVEYSEQA 547 (637)
T ss_pred cCC-CCCCHHHHHHHHHHHccCCCceEECHHH
Confidence 222 134577778888775 565554444433
No 80
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=34.90 E-value=1.1e+02 Score=22.85 Aligned_cols=64 Identities=5% Similarity=-0.217 Sum_probs=41.8
Q ss_pred HcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccc
Q psy5380 6 NQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPI 74 (129)
Q Consensus 6 ~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL 74 (129)
++|+.-.=.....+...+.|+... .| ..++++-.+++.++... -..++..++..|+..+.+.|=
T Consensus 14 ~~G~~~~G~~~~~~sp~~~E~~a~---~G-fD~v~iD~EHg~~~~~~-l~~~i~a~~~~g~~~lVRvp~ 77 (267)
T PRK10128 14 RKGEVQIGLWLSSTTSYMAEIAAT---SG-YDWLLIDGEHAPNTIQD-LYHQLQAIAPYASQPVIRPVE 77 (267)
T ss_pred HcCCceEEEEecCCCcHHHHHHHH---cC-CCEEEEccccCCCCHHH-HHHHHHHHHhcCCCeEEECCC
Confidence 347653322344444445555443 34 57788899999999875 345777889999998887763
No 81
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=34.25 E-value=99 Score=24.30 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=39.5
Q ss_pred CCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 8 GWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 8 G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+.++.+-+...+.+.++++.+ .+ .+.+++..+.|+.-+-..-.++.++|+++|+-++.=...+.|
T Consensus 123 ~g~~v~~v~~~d~~~l~~~i~----~~-tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~ 187 (405)
T PRK08776 123 GHFALITADLTDPRSLADALA----QS-PKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSP 187 (405)
T ss_pred cCcEEEEECCCCHHHHHHhcC----cC-CeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 334555554445666665542 12 467777778777554332346888999999888855444433
No 82
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=34.17 E-value=1e+02 Score=23.73 Aligned_cols=70 Identities=4% Similarity=-0.061 Sum_probs=41.3
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
+|++...+. ..|-|-++..++.++.+. ...+++|+..+.+--=..-..+...|+.+|+.++..+.+.+|+
T Consensus 232 ~l~~~~~~pia~dE~~~~~~~~~~~~~~------~~~d~~~~d~~~~GGi~~~~~i~~lA~~~gi~~~~~~~~~s~i 302 (368)
T TIGR02534 232 RLTRRFNVPIMADESVTGPADALAIAKA------SAADVFALKTTKSGGLLESKKIAAIAEAAGIALYGGTMLEGPI 302 (368)
T ss_pred HHHHhCCCCEEeCcccCCHHHHHHHHHh------CCCCEEEEcccccCCHHHHHHHHHHHHHcCCceeeecchhhHH
Confidence 344544443 667777788777766653 2356677655542100001246778999999988765554443
No 83
>PHA01623 hypothetical protein
Probab=33.92 E-value=36 Score=19.06 Aligned_cols=30 Identities=3% Similarity=-0.044 Sum_probs=23.7
Q ss_pred cccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 99 PKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 99 ~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
-.+++++.+.|+..+...|.+-..+..-||
T Consensus 18 Vrldeel~~~Ld~y~~~~g~~rSe~IreAI 47 (56)
T PHA01623 18 IYMDKDLKTRLKVYCAKNNLQLTQAIEEAI 47 (56)
T ss_pred EEeCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356789999999999999988666665554
No 84
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=33.79 E-value=1.2e+02 Score=22.73 Aligned_cols=64 Identities=9% Similarity=0.164 Sum_probs=38.2
Q ss_pred cCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccc-cccchhhccHHHHHHHhCCeeeeec
Q psy5380 7 QGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHM-FCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 7 ~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l-~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
.|++. -+|++. +..+..+..+.+.+.|. .-+.+..+|-. .+++...+.+...+...++.++.|.
T Consensus 74 ~~~~pvi~gv~~-~t~~~i~~~~~a~~~Ga-dav~~~pP~y~~~~~~~i~~~f~~va~~~~lpi~lYn 139 (303)
T PRK03620 74 AGRVPVIAGAGG-GTAQAIEYAQAAERAGA-DGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYN 139 (303)
T ss_pred CCCCcEEEecCC-CHHHHHHHHHHHHHhCC-CEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 35543 358876 77777777777787774 44455555432 2221112224456777799999997
No 85
>PF04567 RNA_pol_Rpb2_5: RNA polymerase Rpb2, domain 5; InterPro: IPR007647 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 5, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=33.55 E-value=34 Score=18.41 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=12.4
Q ss_pred hHHHHcCCccEEEec
Q psy5380 2 NHAINQGWIMYWGTS 16 (129)
Q Consensus 2 ~~l~~~G~ir~iG~S 16 (129)
.+|+++|.|-+||+-
T Consensus 2 ~~ll~~G~vE~id~e 16 (48)
T PF04567_consen 2 DDLLKEGVVEYIDAE 16 (48)
T ss_dssp HHHHHTTSEEEEETT
T ss_pred hhHhhCCCEEEecch
Confidence 578899999999874
No 86
>PF03822 NAF: NAF domain; InterPro: IPR004041 The NAF domain is a 24 amino acid domain that is found in a plant-specific subgroup of serine-threonine protein kinases (CIPKs), that interact with calcineurin B-like calcium sensor proteins (CBLs). Whereas the N-terminal part of CIPKs comprises a conserved catalytic domain typical of Ser-Thr kinases, the much less conserved C-terminal domain appears to be unique to this subgroup of kinases. The only exception is the NAF domain that forms an 'island of conservation' in this otherwise variable region. The NAF domain has been named after the prominent conserved amino acids Asn-Ala-Phe. It represents a minimum protein interaction module that is both necessary and sufficient to mediate the interaction with the CBL calcium sensor proteins []. The secondary structure of the NAF domain is currently not known, but secondary structure computation of the C-terminal region of Arabidopsis thaliana CBL-interacting protein kinase 1 revealed a long helical structure [].; GO: 0007165 signal transduction; PDB: 2ZFD_B 2EHB_D.
Probab=32.70 E-value=66 Score=18.58 Aligned_cols=16 Identities=6% Similarity=0.212 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHhhCCC
Q psy5380 103 AAVMGEVERVLDNKPA 118 (129)
Q Consensus 103 ~~~~~~l~~la~~~~~ 118 (129)
.+++++++++|...+-
T Consensus 44 ~~Ii~klEe~a~~~~~ 59 (63)
T PF03822_consen 44 SEIIEKLEEIAKKLGF 59 (63)
T ss_dssp HHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHhcCc
Confidence 4789999999987663
No 87
>KOG3054|consensus
Probab=32.61 E-value=56 Score=24.38 Aligned_cols=81 Identities=10% Similarity=0.113 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccCCCccCCCCCCCCCcccccccc
Q psy5380 22 EIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKL 101 (129)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~~~~~~~~~~~~~~~~~~ 101 (129)
-|.++.+|.+..-+.++.-+-.+|.|-.++. -. -.+. -|+.|+|||-.+..+ -+-+.
T Consensus 201 ll~eFv~YIk~nKvV~ledLas~f~Lrtqd~-in----riq~---------~l~eg~ltGVmDDRG---------KfIYI 257 (299)
T KOG3054|consen 201 LLSEFVEYIKKNKVVPLEDLASEFGLRTQDS-IN----RIQE---------LLAEGLLTGVMDDRG---------KFIYI 257 (299)
T ss_pred HHHHHHHHHHhcCeeeHHHHHHHhCccHHHH-HH----HHHH---------HHHhhhheeeecCCC---------ceEEe
Confidence 4567777776544333333455666654442 11 1222 245688888765511 23344
Q ss_pred CHHHHHHHHHHHhhCCCCcchhhhcc
Q psy5380 102 NAAVMGEVERVLDNKPARPPMVSTLA 127 (129)
Q Consensus 102 ~~~~~~~l~~la~~~~~~~~~la~~A 127 (129)
+++-+..+...-+..|. .+++++|
T Consensus 258 S~eEl~AVAkfIkqrGR--VSIaelA 281 (299)
T KOG3054|consen 258 SMEELAAVAKFIKQRGR--VSIAELA 281 (299)
T ss_pred cHHHHHHHHHHHHHcCc--eeHHHHH
Confidence 66666666666666653 3444443
No 88
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=32.36 E-value=1.4e+02 Score=22.37 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=41.9
Q ss_pred cCCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEeccccc-ccccchhhccHHHHHHHh-CCeeeee-cccccc
Q psy5380 7 QGWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYH-MFCRDKAELYMPELYNKI-GVGMMAW-SPISMA 77 (129)
Q Consensus 7 ~G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~-l~~~~~~e~~~~~~~~~~-gi~~~~~-spL~~G 77 (129)
.|++ -..|++..+..+..+..+.+.+.|. .-+.+..+|. ..+++..-+.+...|+.. ++.++.| .|-..|
T Consensus 67 ~g~~pvi~gv~~~~t~~ai~~a~~A~~~Ga-d~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg 140 (294)
T TIGR02313 67 AGRIPFAPGTGALNHDETLELTKFAEEAGA-DAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAA 140 (294)
T ss_pred CCCCcEEEECCcchHHHHHHHHHHHHHcCC-CEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcC
Confidence 4654 3568887778777777777887774 4555555553 222211112234467777 8999999 454444
No 89
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=32.08 E-value=50 Score=25.79 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.+++|||.++-.-||++.+..
T Consensus 302 ~Ir~~A~e~~VPiven~pLARaLy~ 326 (358)
T PRK13109 302 KIREIAEENGIPVIEDKPLARSLYD 326 (358)
T ss_pred HHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 4678999999999999999999875
No 90
>COG2949 SanA Uncharacterized membrane protein [Function unknown]
Probab=32.05 E-value=2e+02 Score=21.00 Aligned_cols=16 Identities=19% Similarity=-0.012 Sum_probs=12.7
Q ss_pred HHHHcCCccEEEecCC
Q psy5380 3 HAINQGWIMYWGTSRW 18 (129)
Q Consensus 3 ~l~~~G~ir~iG~Sn~ 18 (129)
++.++|||++.=+|.-
T Consensus 87 ~ly~~gKV~~LLlSGD 102 (235)
T COG2949 87 ALYKAGKVNYLLLSGD 102 (235)
T ss_pred HHHhcCCeeEEEEecC
Confidence 5778899999988753
No 91
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=31.90 E-value=1.1e+02 Score=22.39 Aligned_cols=64 Identities=8% Similarity=-0.193 Sum_probs=42.3
Q ss_pred HcCCccEEEe-cCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccc
Q psy5380 6 NQGWIMYWGT-SRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPIS 75 (129)
Q Consensus 6 ~~G~ir~iG~-Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~ 75 (129)
++|+. -+|+ ++.+...+.|+... .| ..++++-.++++++... -..++..++..|+..+.+.|-.
T Consensus 8 ~~g~~-~~G~~~~~~sp~~~e~~a~---~G-~D~v~iD~EHg~~~~~~-~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 8 LARET-LIGCWSALGNPITTEVLGL---AG-FDWLLLDGEHAPNDVLT-FIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HcCCc-eEEEEEcCCCcHHHHHHHh---cC-CCEEEEecccCCCCHHH-HHHHHHHHhhcCCCcEEECCCC
Confidence 44664 3443 44444445555443 34 57788899999998775 3457778899999999887753
No 92
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=31.88 E-value=1.8e+02 Score=23.22 Aligned_cols=110 Identities=13% Similarity=0.065 Sum_probs=58.9
Q ss_pred ccEEEec----CCCHHHHHHHHHHHHhcCCCCceE----ecccccccccchhhccHHHHHHHhCCeeee---eccccccc
Q psy5380 10 IMYWGTS----RWSPVEIMEAYSNCRQFNCATPII----EQTEYHMFCRDKAELYMPELYNKIGVGMMA---WSPISMAL 78 (129)
Q Consensus 10 ir~iG~S----n~~~~~~~~~~~~~~~~g~~~~~~----~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~---~spL~~G~ 78 (129)
++.++|. +..++.+++.++-- .+++.. .|++....-...--..++++|+++|+-+|- |+.|...
T Consensus 201 ~~~~~vp~d~~G~~~e~le~~~~~~----~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~- 275 (459)
T COG1167 201 ARVIPVPVDEDGIDPEALEEALAQW----KPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYD- 275 (459)
T ss_pred CcEEecCCCCCCCCHHHHHHHHhhc----CCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcC-
Confidence 4555553 46677777776531 145554 355443322211123689999999999994 4444322
Q ss_pred cCCCccCC------------------CCCCCCCccccccccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 79 ISGKIEEF------------------TVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 79 Ltgk~~~~------------------~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
+...+. ...++-|.... -.++++.+.+..+......++..+.|.+|
T Consensus 276 --~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~v--v~p~~~~~~~~~~k~~~~~~~s~~~Q~~l 339 (459)
T COG1167 276 --GPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYV--VAPPELIEKLLRLKQAADLGPSSLSQAAL 339 (459)
T ss_pred --CCCCCChHhhCCCCCEEEEeeehhhcccccceeee--eCCHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 111100 00011111110 12457888888888888877777777665
No 93
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=31.80 E-value=84 Score=24.22 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=10.3
Q ss_pred EEEecCCCHHHHHHHHHHHHh
Q psy5380 12 YWGTSRWSPVEIMEAYSNCRQ 32 (129)
Q Consensus 12 ~iG~Sn~~~~~~~~~~~~~~~ 32 (129)
-.|....+...+.++.++..+
T Consensus 293 i~g~~~~~~~~~~~~~~l~~~ 313 (375)
T PLN02178 293 VGGSQIGGMKETQEMLEFCAK 313 (375)
T ss_pred EEEeCccCHHHHHHHHHHHHh
Confidence 344433444555555555543
No 94
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=30.89 E-value=1.4e+02 Score=22.94 Aligned_cols=64 Identities=9% Similarity=-0.190 Sum_probs=40.5
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
+|++...+. ..|=|-++...+..+.+. ..++++|...+.+---..-..+.+.|+.+|+.+++.+
T Consensus 208 ~L~~~~~~pia~gE~~~~~~~~~~~i~~------~a~di~~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 208 LIRQHTATPLAVGEVFNSIWDWQNLIQE------RLIDYIRTTVSHAGGITPARKIADLASLYGVRTGWHG 272 (361)
T ss_pred HHHhcCCCCEEeccCCcCHHHHHHHHHh------CCCCEEecCccccCCHHHHHHHHHHHHHcCCeeeccC
Confidence 455555443 667777888887777664 2467777776553200001357789999999887654
No 95
>PF13289 SIR2_2: SIR2-like domain
Probab=29.60 E-value=1.5e+02 Score=18.77 Aligned_cols=62 Identities=15% Similarity=0.223 Sum_probs=31.3
Q ss_pred HHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeee
Q psy5380 3 HAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMM 69 (129)
Q Consensus 3 ~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~ 69 (129)
.+.....+-.||.|--.. .+......+...... .....|-+ .+.........+.++.||.+|
T Consensus 82 ~~l~~~~~lfiGys~~D~-~i~~~l~~~~~~~~~---~~~~~~~v-~~~~~~~~~~~~~~~~~i~~I 143 (143)
T PF13289_consen 82 SLLRSKTLLFIGYSFNDP-DIRQLLRSALENSGK---SRPRHYIV-IPDPDDENEREFLEKYGIEVI 143 (143)
T ss_pred HHHcCCCEEEEEECCCCH-HHHHHHHHHHHhccC---CCccEEEE-EcCCchHHHHHHHHHcCCEEC
Confidence 344566778899995444 555555444332211 11111222 222111234567888898775
No 96
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=29.24 E-value=1.4e+02 Score=19.31 Aligned_cols=52 Identities=13% Similarity=0.106 Sum_probs=33.6
Q ss_pred ccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCee
Q psy5380 10 IMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGM 68 (129)
Q Consensus 10 ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~ 68 (129)
|.-+|..|.+ ..+.+.++.+.+| ..+.++...=...+ .+++..+++..|.++
T Consensus 3 itiy~~p~C~--t~rka~~~L~~~g-i~~~~~~y~~~~~s----~~eL~~~l~~~g~~~ 54 (117)
T COG1393 3 ITIYGNPNCS--TCRKALAWLEEHG-IEYTFIDYLKTPPS----REELKKILSKLGDGV 54 (117)
T ss_pred EEEEeCCCCh--HHHHHHHHHHHcC-CCcEEEEeecCCCC----HHHHHHHHHHcCccH
Confidence 5667888877 4588888888888 35544333222322 346788888888663
No 97
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=28.91 E-value=76 Score=24.18 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEecccccccccchh---------hccHHHHHHHhCCeeeee-cccccc
Q psy5380 17 RWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKA---------ELYMPELYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 17 n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~---------e~~~~~~~~~~gi~~~~~-spL~~G 77 (129)
-.+++...+.++.++..|+ .-+...+.||+-++.+- -..+++.|+++|+-+|.+ .|...+
T Consensus 20 r~p~~~W~~~l~k~ka~G~-n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~a 89 (319)
T PF01301_consen 20 RIPPEYWRDRLQKMKAAGL-NTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICA 89 (319)
T ss_dssp GS-GGGHHHHHHHHHHTT--SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---T
T ss_pred cCChhHHHHHHHHHHhCCc-ceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecc
Confidence 3456667777777887784 66777888888776431 135689999999999988 676554
No 98
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=28.71 E-value=1.9e+02 Score=21.27 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 17 RWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 17 n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
.-++.++.++.+.+++.+ .+.++.+.+++- + .+-..+++.|+.++.-.||+.+
T Consensus 203 eps~~~l~~l~~~ik~~~-v~~if~e~~~~~--~-----~~~~la~~~g~~v~~ld~l~~~ 255 (282)
T cd01017 203 EPSPKQLAELVEFVKKSD-VKYIFFEENASS--K-----IAETLAKETGAKLLVLNPLETL 255 (282)
T ss_pred CCCHHHHHHHHHHHHHcC-CCEEEEeCCCCh--H-----HHHHHHHHcCCcEEEecccccc
Confidence 456778888888777777 466666666553 1 1223567778877766777655
No 99
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=28.58 E-value=1.1e+02 Score=22.92 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=34.2
Q ss_pred CccEEEec---CCCHHHHHHHHHHHHhcC-CCCceEecccccc----cccchhhccHHHHHHHhCCeee
Q psy5380 9 WIMYWGTS---RWSPVEIMEAYSNCRQFN-CATPIIEQTEYHM----FCRDKAELYMPELYNKIGVGMM 69 (129)
Q Consensus 9 ~ir~iG~S---n~~~~~~~~~~~~~~~~g-~~~~~~~q~~~~l----~~~~~~e~~~~~~~~~~gi~~~ 69 (129)
++.-++-. +.+++.++++.+....|. -++.+++....+. .....+-+++-++|+++||.+.
T Consensus 94 ~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lh 162 (290)
T PF01212_consen 94 KLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLH 162 (290)
T ss_dssp EEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEE
T ss_pred EEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEE
Confidence 45555553 488999998887643321 1234445555554 1111123468899999999887
No 100
>PF15470 DUF4637: Domain of unknown function (DUF4637)
Probab=28.50 E-value=23 Score=24.10 Aligned_cols=38 Identities=21% Similarity=0.484 Sum_probs=27.9
Q ss_pred ecccccccccchhhccHHHHHHHhCCeeeee-ccccccccCC
Q psy5380 41 EQTEYHMFCRDKAELYMPELYNKIGVGMMAW-SPISMALISG 81 (129)
Q Consensus 41 ~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~-spL~~G~Ltg 81 (129)
-.+.|+++.+.. ...-+...++.+-+|..| |||+ +|.|
T Consensus 66 gSVSY~PLRQEs-StqqValLRRadsgFWgwlsPfa--Ll~g 104 (173)
T PF15470_consen 66 GSVSYCPLRQES-STQQVALLRRADSGFWGWLSPFA--LLGG 104 (173)
T ss_pred Cceecccccccc-hhhHHHHhhcccCCchhhhcHHH--Hhcc
Confidence 346799998875 333456889999999999 8986 4444
No 101
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.49 E-value=64 Score=18.04 Aligned_cols=12 Identities=17% Similarity=0.185 Sum_probs=5.4
Q ss_pred HHHHHHhCCeee
Q psy5380 58 PELYNKIGVGMM 69 (129)
Q Consensus 58 ~~~~~~~gi~~~ 69 (129)
...+++.||.++
T Consensus 47 ~~~~~~~gi~~i 58 (67)
T smart00481 47 YKAAKKAGIKPI 58 (67)
T ss_pred HHHHHHcCCeEE
Confidence 334444454443
No 102
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=28.17 E-value=2.1e+02 Score=20.44 Aligned_cols=48 Identities=10% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCceEeccccc-ccccchh--------hccHHHHHHHhCCeeeee
Q psy5380 23 IMEAYSNCRQFNCATPIIEQTEYH-MFCRDKA--------ELYMPELYNKIGVGMMAW 71 (129)
Q Consensus 23 ~~~~~~~~~~~g~~~~~~~q~~~~-l~~~~~~--------e~~~~~~~~~~gi~~~~~ 71 (129)
+.+..+....+|+ .+...+...+ +++.... ....++.+++.|+.++..
T Consensus 47 ~~~l~~~l~~~gl-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~ 103 (274)
T COG1082 47 LAELKELLADYGL-EITSLAPFSNNLLSPDEEEREEALEELKRAIELAKELGAKVVVV 103 (274)
T ss_pred HHHHHHHHHHcCc-EEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHHHcCCCeEEe
Confidence 4555555555553 4444444444 3443310 001455566666554443
No 103
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=28.10 E-value=98 Score=26.08 Aligned_cols=103 Identities=16% Similarity=0.134 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHH-HhC-Ceeeeeccccccc-----cCCCccCCCCCCCCCc
Q psy5380 22 EIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYN-KIG-VGMMAWSPISMAL-----ISGKIEEFTVPVYPKS 94 (129)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~-~~g-i~~~~~spL~~G~-----Ltgk~~~~~~~~~~~~ 94 (129)
.+..-.+..+.+|. ++++.=++|.- |.+.+-+.+.++|+ +.| +.+..-...+.|= |..+....-.-..+++
T Consensus 425 NL~~Hien~~~fgv-pvVVAIN~F~t-DT~~Ei~~i~~~~~~~~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~f 502 (625)
T PTZ00386 425 NLQRHIQNIRKFGV-PVVVALNKFST-DTDAELELVKELALQEGGAADVVVTDHWAKGGAGAVDLAQALIRVTENVPSNF 502 (625)
T ss_pred HHHHHHHHHHHcCC-CeEEEecCCCC-CCHHHHHHHHHHHHHhcCCccEEEechhhccchhHHHHHHHHHHHHhcCCCCC
Confidence 34555666777885 44444444443 44432234678898 889 6777777776662 2222111000001122
Q ss_pred cccccccCHHHHHHHHHHHhh-CCCCcchhhhcc
Q psy5380 95 SKLVPKLNAAVMGEVERVLDN-KPARPPMVSTLA 127 (129)
Q Consensus 95 ~~~~~~~~~~~~~~l~~la~~-~~~~~~~la~~A 127 (129)
+..++ ....+.++++.||.+ +|......+..|
T Consensus 503 k~LYd-~~~sI~eKIetIAkeIYGA~gVefS~~A 535 (625)
T PTZ00386 503 KLLYP-LDASLKEKIETICKEIYGAAGVEYLNDA 535 (625)
T ss_pred cccCC-CCCCHHHHHHHHHHHccCCCcEEECHHH
Confidence 22222 134577788888776 565555444433
No 104
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=28.03 E-value=54 Score=17.83 Aligned_cols=22 Identities=5% Similarity=0.064 Sum_probs=17.7
Q ss_pred cccCHHHHHHHHHHHhhCCCCc
Q psy5380 99 PKLNAAVMGEVERVLDNKPARP 120 (129)
Q Consensus 99 ~~~~~~~~~~l~~la~~~~~~~ 120 (129)
-+++.++.+.+++.|+..+.+.
T Consensus 9 lRlP~~l~~~lk~~A~~~gRS~ 30 (50)
T PF03869_consen 9 LRLPEELKEKLKERAEENGRSM 30 (50)
T ss_dssp EECEHHHHHHHHHHHHHTTS-H
T ss_pred eECCHHHHHHHHHHHHHhCCCh
Confidence 3567899999999999999874
No 105
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=27.95 E-value=72 Score=18.53 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=18.2
Q ss_pred cCCccEEEecCCCHHHHHHHH
Q psy5380 7 QGWIMYWGTSRWSPVEIMEAY 27 (129)
Q Consensus 7 ~G~ir~iG~Sn~~~~~~~~~~ 27 (129)
+|....+|.++++.+.+.++.
T Consensus 43 ~g~~ia~G~a~~ss~ei~~~~ 63 (74)
T PF01472_consen 43 DGEVIAVGRANMSSEEIKKMK 63 (74)
T ss_dssp TSSEEEEEEESSTHHHHHHHS
T ss_pred CCeEEEEEEEecCHHHHHHHc
Confidence 488999999999999887764
No 106
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=27.71 E-value=1.7e+02 Score=21.83 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=33.7
Q ss_pred cEEEecCCCHHHHHHHHHHHHhcCCCCceEeccccc-ccccchhhccHHHHHHHhCCeeeeec
Q psy5380 11 MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYH-MFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 11 r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~-l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
-.+|++. +.....+..+.+.+.|. .-+++..+|. ..+++..-+.+...+...++.++.|.
T Consensus 77 vi~gv~~-~t~~ai~~a~~a~~~Ga-dav~~~pP~y~~~s~~~i~~~f~~v~~a~~~pvilYn 137 (296)
T TIGR03249 77 VYTGVGG-NTSDAIEIARLAEKAGA-DGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQ 137 (296)
T ss_pred EEEecCc-cHHHHHHHHHHHHHhCC-CEEEECCCCCCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 4567764 46666666677777774 4444444443 22221111123345666789999997
No 107
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=27.67 E-value=2.5e+02 Score=21.22 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=37.5
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeee
Q psy5380 4 AINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAW 71 (129)
Q Consensus 4 l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~ 71 (129)
+-+.|-+-.+|..+.+++.+++.++..+...-.++-++- +...+...+.++.+.++++.++..
T Consensus 31 vs~aGglG~l~~~~~~~~~l~~~i~~~~~~t~~pfgvn~-----~~~~~~~~~~~~~~~~~~v~~v~~ 93 (307)
T TIGR03151 31 VSNAGGLGIIGAGNAPPDVVRKEIRKVKELTDKPFGVNI-----MLLSPFVDELVDLVIEEKVPVVTT 93 (307)
T ss_pred HHhCCCcceeccccCCHHHHHHHHHHHHHhcCCCcEEee-----ecCCCCHHHHHHHHHhCCCCEEEE
Confidence 345788888888888888887777766543212332221 111111234566677778777764
No 108
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.55 E-value=1.2e+02 Score=18.66 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCceEecccccccc------------cch--hhccHHHHHHHhCCeeeeeccccccccCCC
Q psy5380 22 EIMEAYSNCRQFNCATPIIEQTEYHMFC------------RDK--AELYMPELYNKIGVGMMAWSPISMALISGK 82 (129)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~q~~~~l~~------------~~~--~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk 82 (129)
-...+.+.++.+|+ +..+.+..++=+. ++. ...++-+.+.+.|+.+..-.|-.-|.+.|+
T Consensus 19 l~~k~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~mdg~ 92 (95)
T TIGR00853 19 LVNKMNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQYGKLTGA 92 (95)
T ss_pred HHHHHHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhhcccCCcc
Confidence 33566666777774 4555555443221 110 023455677888999998888888888775
No 109
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=27.46 E-value=2.5e+02 Score=20.76 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=39.6
Q ss_pred CCccEEEecCCCHHHHHHHHHHHHhcCCCCceEeccccc-c-cccchhhccHHHHHHHhCCeeeee-cccccc
Q psy5380 8 GWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYH-M-FCRDKAELYMPELYNKIGVGMMAW-SPISMA 77 (129)
Q Consensus 8 G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~-l-~~~~~~e~~~~~~~~~~gi~~~~~-spL~~G 77 (129)
++| ..|++..+.....+..+.+++.|. .-+.+..+|- . .+++....-+...++ ++.++.| .|-..|
T Consensus 66 ~~v-i~gvg~~~~~~ai~~a~~a~~~Ga-d~v~v~~P~y~~~~~~~~i~~yf~~v~~--~lpv~iYn~P~~tg 134 (279)
T cd00953 66 DKV-IFQVGSLNLEESIELARAAKSFGI-YAIASLPPYYFPGIPEEWLIKYFTDISS--PYPTFIYNYPKATG 134 (279)
T ss_pred CCE-EEEeCcCCHHHHHHHHHHHHHcCC-CEEEEeCCcCCCCCCHHHHHHHHHHHHh--cCCEEEEeCccccC
Confidence 443 788887778777777788888884 4444555543 3 222211112333444 8999999 465566
No 110
>PRK09108 type III secretion system protein HrcU; Validated
Probab=27.39 E-value=84 Score=24.52 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-.-||++.+.+
T Consensus 295 ~Ir~~A~e~~VPvven~pLARaLy~ 319 (353)
T PRK09108 295 ALRRHAHALGIPIVGNPPVARALYR 319 (353)
T ss_pred HHHHHHHHcCCCEEeCHHHHHHHhc
Confidence 4678999999999999999999983
No 111
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=27.17 E-value=1e+02 Score=21.98 Aligned_cols=33 Identities=15% Similarity=-0.150 Sum_probs=25.4
Q ss_pred CCccEEEec-CCCHHHHHHHHHHHHhcCCCCceEeccccc
Q psy5380 8 GWIMYWGTS-RWSPVEIMEAYSNCRQFNCATPIIEQTEYH 46 (129)
Q Consensus 8 G~ir~iG~S-n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~ 46 (129)
+.++.+||. |-+++.+.++.+. .+++++|++-+
T Consensus 51 ~~~~~VgVf~~~~~~~i~~~~~~------~~~d~vQLHG~ 84 (207)
T PRK13958 51 NHIDKVCVVVNPDLTTIEHILSN------TSINTIQLHGT 84 (207)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHh------CCCCEEEECCC
Confidence 458889985 7788888777764 46899999864
No 112
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=27.15 E-value=69 Score=24.84 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-.-||++.+..
T Consensus 292 ~Ir~iA~e~~VPiven~pLAR~Ly~ 316 (342)
T TIGR01404 292 AVRAYAEEAGIPVVRDIPLARQLYR 316 (342)
T ss_pred HHHHHHHHcCCCEeeCHHHHHHHHH
Confidence 4678999999999999999999875
No 113
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=26.89 E-value=1.5e+02 Score=22.00 Aligned_cols=48 Identities=4% Similarity=-0.001 Sum_probs=31.2
Q ss_pred HHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 26 AYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 26 ~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+.+.++++|+ +.+.+....+..+. ..-+..+++++|+.+++.|-=+.|
T Consensus 145 i~~la~~~gL--~fFy~~~C~~C~~~--apil~~fa~~ygi~v~~VS~DG~~ 192 (256)
T TIGR02739 145 IQQLSQSYGL--FFFYRGKSPISQKM--APVIQAFAKEYGISVIPISVDGTL 192 (256)
T ss_pred HHHHHhceeE--EEEECCCCchhHHH--HHHHHHHHHHhCCeEEEEecCCCC
Confidence 3344555554 44555555554443 344667999999999999976665
No 114
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=26.66 E-value=1.1e+02 Score=20.27 Aligned_cols=58 Identities=10% Similarity=0.097 Sum_probs=32.1
Q ss_pred ccEEEecC---CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecc
Q psy5380 10 IMYWGTSR---WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 10 ir~iG~Sn---~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~sp 73 (129)
|.-|-+++ -+++.+++..+.+ ..+.++-+--..-.+.+ ...+...|+..||++-++|.
T Consensus 44 v~~W~v~~~~~Lt~e~f~~vl~~a-----~~~EilliGTG~~~rf~-p~~l~aal~~~gIsve~Mst 104 (127)
T COG3737 44 VCDWEVATLSDLTPEDFERVLAEA-----PDVEILLIGTGARLRFP-PPKLRAALKAAGISVEPMST 104 (127)
T ss_pred cccccccChhhCCHHHHHHHHhcC-----CCceEEEEecCccccCC-CHHHHHHHHHcCCccccccc
Confidence 44444433 3556666666544 23344333333323333 34688899999999877653
No 115
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=26.55 E-value=1.5e+02 Score=22.52 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=35.5
Q ss_pred hHHHHcCCccEEEecCCCH------------HHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCC
Q psy5380 2 NHAINQGWIMYWGTSRWSP------------VEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGV 66 (129)
Q Consensus 2 ~~l~~~G~ir~iG~Sn~~~------------~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi 66 (129)
.+++++|++-.||=+..+- +.+..+.+.|...+ ..+|++--=.+... -.++-+++++.|+
T Consensus 114 ~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvd----c~vqLHtes~~~~~-~~~i~~~ak~~G~ 185 (285)
T COG1831 114 AKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVD----CAVQLHTESLDEET-YEEIAEMAKEAGI 185 (285)
T ss_pred HHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCC----CcEEEecCCCChHH-HHHHHHHHHHhCC
Confidence 4688999998888665432 44456666665333 23566543333322 1346677888886
No 116
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=26.37 E-value=1.9e+02 Score=22.14 Aligned_cols=64 Identities=11% Similarity=0.017 Sum_probs=40.0
Q ss_pred HHHHcCCc-cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec
Q psy5380 3 HAINQGWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 3 ~l~~~G~i-r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
+|+++.-+ -..|=|.++.+++..+.+. ..++++|...+.+-=-..-..+...|+++|+.+++.+
T Consensus 221 ~L~~~~~~pia~dEs~~~~~~~~~~~~~------~~~d~v~~d~~~~GGit~~~~~~~lA~~~gi~~~~h~ 285 (352)
T cd03325 221 EIAARTTIPIATGERLFSRWDFKELLED------GAVDIIQPDISHAGGITELKKIAAMAEAYDVALAPHC 285 (352)
T ss_pred HHHHhCCCCEEecccccCHHHHHHHHHh------CCCCEEecCccccCCHHHHHHHHHHHHHcCCcEeccC
Confidence 44444333 3666778888888777653 2467777775543100002357889999999988665
No 117
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=26.25 E-value=74 Score=26.89 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-.-|||+.+..
T Consensus 592 rIReiAeE~gVPIVENpPLARALY~ 616 (646)
T PRK12773 592 LIIRIARENGVPTVEDRLQARGLYE 616 (646)
T ss_pred HHHHHHHHcCCcEEECHHHHHHHHH
Confidence 4678999999999999999999875
No 118
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermotoga maritime glycerophosphodiester phosphodiesterase (TmGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. TmGDE exists as a monomer that might be the biologically relevant form.
Probab=26.22 E-value=1.6e+02 Score=20.88 Aligned_cols=26 Identities=8% Similarity=-0.265 Sum_probs=19.4
Q ss_pred HHcCCccEEEecCCCHHHHHHHHHHH
Q psy5380 5 INQGWIMYWGTSRWSPVEIMEAYSNC 30 (129)
Q Consensus 5 ~~~G~ir~iG~Sn~~~~~~~~~~~~~ 30 (129)
++.|....+=+|.|+.+.+.++.+..
T Consensus 113 ~~~~~~~~v~i~SF~~~~l~~~~~~~ 138 (226)
T cd08568 113 EKFNALDRVIFSSFNHDALRELRKLD 138 (226)
T ss_pred HHcCCCCcEEEEECCHHHHHHHHHhC
Confidence 44566667788999998888887754
No 119
>PRK14017 galactonate dehydratase; Provisional
Probab=26.20 E-value=1.7e+02 Score=22.65 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=40.2
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~sp 73 (129)
+|+++..+. ..|=|.++...+..+.+. .-.+++|...+.+-=-..-..+.+.|+.+||.+++.+.
T Consensus 222 ~L~~~~~~pIa~dEs~~~~~~~~~li~~------~a~d~v~~d~~~~GGit~~~~ia~~A~~~gi~~~~h~~ 287 (382)
T PRK14017 222 EIAAQTSIPIATGERLFSRWDFKRVLEA------GGVDIIQPDLSHAGGITECRKIAAMAEAYDVALAPHCP 287 (382)
T ss_pred HHHhcCCCCEEeCCccCCHHHHHHHHHc------CCCCeEecCccccCCHHHHHHHHHHHHHcCCeEeecCC
Confidence 445544443 566677888877777664 23667777665531000023577899999998887654
No 120
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=26.05 E-value=2.4e+02 Score=22.20 Aligned_cols=10 Identities=20% Similarity=0.567 Sum_probs=5.1
Q ss_pred Ceeeeecccc
Q psy5380 66 VGMMAWSPIS 75 (129)
Q Consensus 66 i~~~~~spL~ 75 (129)
|-+|+|.|++
T Consensus 316 VNLIpyNp~~ 325 (373)
T PRK14459 316 VNLIPLNPTP 325 (373)
T ss_pred EEEEccCCCC
Confidence 4455555544
No 121
>PF04412 DUF521: Protein of unknown function (DUF521); InterPro: IPR007506 This is a group of hypothetical proteins.
Probab=26.03 E-value=1.7e+02 Score=23.37 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=44.9
Q ss_pred ccEEEecCCCHHHHHHHHHHHHhcC--CCCceEecccccccccchhhccHHHHHHHhCCeeeee
Q psy5380 10 IMYWGTSRWSPVEIMEAYSNCRQFN--CATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAW 71 (129)
Q Consensus 10 ir~iG~Sn~~~~~~~~~~~~~~~~g--~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~ 71 (129)
+-++|.-.++.+++.++.+..+..+ ......+.........-. +.++.+..++.|+.++.-
T Consensus 292 ~V~lGcPH~S~~El~~ia~ll~gr~~~~~~~~~i~t~~~v~~~a~-~~G~~~~le~~G~~iv~d 354 (400)
T PF04412_consen 292 LVALGCPHLSLEELREIAELLEGRKVHPNVPLWITTSRAVYELAE-RMGYVERLEKAGVQIVTD 354 (400)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCceEEEECCHHHHHHHH-hCCHHHHHHHcCCEEEcc
Confidence 5678888999999999999987666 334445666666655442 446888999999987754
No 122
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=25.99 E-value=1.8e+02 Score=21.55 Aligned_cols=48 Identities=4% Similarity=0.007 Sum_probs=31.9
Q ss_pred HHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 26 AYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 26 ~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+.+++.++|+ +-+.+....+..+. ..-+-.+++++|+.+++.|-=++|
T Consensus 138 i~~la~~~GL--~fFy~s~Cp~C~~~--aPil~~fa~~yg~~v~~VS~DG~~ 185 (248)
T PRK13703 138 IAKLAEHYGL--MFFYRGQDPIDGQL--AQVINDFRDTYGLSVIPVSVDGVI 185 (248)
T ss_pred HHHHHhcceE--EEEECCCCchhHHH--HHHHHHHHHHhCCeEEEEecCCCC
Confidence 4455566654 44566665555544 345678999999999999965554
No 123
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=25.96 E-value=1.5e+02 Score=22.66 Aligned_cols=61 Identities=11% Similarity=-0.001 Sum_probs=37.2
Q ss_pred cEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 11 MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 11 r~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
-..|=|-++.+.+..+.+. ...+++|+..+.+---..-..+...|+.+|+.++.-+...+|
T Consensus 231 ia~dEs~~~~~~~~~~~~~------~~~d~~~ik~~~~GGit~~~~i~~~A~~~gi~~~~g~~~es~ 291 (354)
T cd03317 231 ICLDESIQSAEDARKAIEL------GACKIINIKPGRVGGLTEALKIHDLCQEHGIPVWCGGMLESG 291 (354)
T ss_pred EEeCCccCCHHHHHHHHHc------CCCCEEEecccccCCHHHHHHHHHHHHHcCCcEEecCcccch
Confidence 3556677788777777653 235666766544321000134677899999998876555444
No 124
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=25.92 E-value=1.2e+02 Score=22.74 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=35.9
Q ss_pred cCCccEEEecCCCHHH----HHHHHHHHHhcCCCCceEecccccccccchh---hccHHHHHHHhCCeeeeecc
Q psy5380 7 QGWIMYWGTSRWSPVE----IMEAYSNCRQFNCATPIIEQTEYHMFCRDKA---ELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 7 ~G~ir~iG~Sn~~~~~----~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~---e~~~~~~~~~~gi~~~~~sp 73 (129)
+--=|++|+.++++.. .+++.+...+.| ++-+|++--.....+. -..+.+.|+++|+.+.....
T Consensus 95 ~~pdrf~~~~~v~p~~~~~a~~E~er~v~~~g---f~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG 165 (293)
T COG2159 95 EYPDRFVGFARVDPRDPEAAAEELERRVRELG---FVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTG 165 (293)
T ss_pred hCCcceeeeeeeCCCchHHHHHHHHHHHHhcC---ceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeC
Confidence 3445888988887764 334444444333 4444442222221111 13478999999998887433
No 125
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=25.46 E-value=1.9e+02 Score=22.72 Aligned_cols=64 Identities=6% Similarity=-0.233 Sum_probs=39.8
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
+|++.-.|. ..|=|-++.+.+.++.+. .-++++|...+..-=-..-..+...|+.+|+.+++.+
T Consensus 251 ~L~~~~~iPIa~dEs~~~~~~~~~li~~------~a~dii~~d~~~~GGit~~~kia~lA~~~gi~~~~h~ 315 (404)
T PRK15072 251 LIRQHTTTPLAVGEVFNSIWDCKQLIEE------QLIDYIRTTVTHAGGITHLRRIADFAALYQVRTGSHG 315 (404)
T ss_pred HHHhcCCCCEEeCcCccCHHHHHHHHHc------CCCCEEecCccccCcHHHHHHHHHHHHHcCCceeecc
Confidence 445544343 667777888888777664 2467777766553200001356788999999888754
No 126
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=25.38 E-value=1.6e+02 Score=22.60 Aligned_cols=69 Identities=6% Similarity=0.002 Sum_probs=38.6
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+|.++..|. ..|=|-++..++.++.+. ..++.+|+....+---..-..+..+|+++|+.++.-+-..+|
T Consensus 233 ~l~~~~~~pia~dE~~~~~~~~~~~i~~------~~~d~~~~d~~~~GGit~~~~~~~~a~~~gi~~~~~~~~~s~ 302 (365)
T cd03318 233 RLRSRNRVPIMADESVSGPADAFELARR------GAADVFSLKIAKSGGLRRAQKVAAIAEAAGIALYGGTMLESS 302 (365)
T ss_pred HHHhhcCCCEEcCcccCCHHHHHHHHHh------CCCCeEEEeecccCCHHHHHHHHHHHHHcCCceeecCcchhH
Confidence 344443333 556677777777777653 235566665444210000134677899999998864433333
No 127
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=25.36 E-value=1.3e+02 Score=21.04 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=23.6
Q ss_pred HHcCC-ccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhC
Q psy5380 5 INQGW-IMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIG 65 (129)
Q Consensus 5 ~~~G~-ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~g 65 (129)
+..|+ |.++|. +-+++.+.++... .+|+++.+.+++...-..-.++++.+++.|
T Consensus 109 ~~~G~~vi~LG~-~vp~e~~v~~~~~------~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~ 163 (197)
T TIGR02370 109 RANGFDVIDLGR-DVPIDTVVEKVKK------EKPLMLTGSALMTTTMYGQKDINDKLKEEG 163 (197)
T ss_pred HhCCcEEEECCC-CCCHHHHHHHHHH------cCCCEEEEccccccCHHHHHHHHHHHHHcC
Confidence 34452 555553 3444544444432 345554444444332221223455555553
No 128
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=25.28 E-value=33 Score=18.34 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=12.6
Q ss_pred HHHHHhhCCCCcchhhh
Q psy5380 109 VERVLDNKPARPPMVST 125 (129)
Q Consensus 109 l~~la~~~~~~~~~la~ 125 (129)
|++||+..|++..+++.
T Consensus 2 i~dIA~~agvS~~TVSr 18 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSR 18 (46)
T ss_dssp HHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 67888888887766553
No 129
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=25.26 E-value=1.7e+02 Score=22.76 Aligned_cols=61 Identities=8% Similarity=-0.011 Sum_probs=35.7
Q ss_pred ccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccc
Q psy5380 10 IMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPIS 75 (129)
Q Consensus 10 ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~ 75 (129)
+...-+...+.+.++++.+- + .+.+++..+.|+.-+-..-+.+.+.|+++|+-++.=...+
T Consensus 116 ~~v~~~d~~d~~~l~~ai~~----~-tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~ 176 (382)
T TIGR02080 116 FRVLFVDQGDEQALRAALAQ----K-PKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFL 176 (382)
T ss_pred eEEEEECCCCHHHHHHhcCc----C-ceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCc
Confidence 33333334456666555431 2 4667777777775443223468889999998777444433
No 130
>PRK11675 LexA regulated protein; Provisional
Probab=25.04 E-value=74 Score=19.81 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=23.2
Q ss_pred ccCHHHHHHHHHHHhhCCCCcchhhhccc
Q psy5380 100 KLNAAVMGEVERVLDNKPARPPMVSTLAL 128 (129)
Q Consensus 100 ~~~~~~~~~l~~la~~~~~~~~~la~~AL 128 (129)
..+.++++.|+++|+..+.+...+-.-+|
T Consensus 56 Kldedl~ekL~eyAe~~nitRSElIr~~I 84 (90)
T PRK11675 56 KLNADLVDALNELAEARNISRSELIEEIL 84 (90)
T ss_pred EECHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45789999999999999998776655443
No 131
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=24.99 E-value=69 Score=25.68 Aligned_cols=27 Identities=22% Similarity=0.381 Sum_probs=20.8
Q ss_pred ccHHHHHHHhCCeeeeeccccccccCCCccC
Q psy5380 55 LYMPELYNKIGVGMMAWSPISMALISGKIEE 85 (129)
Q Consensus 55 ~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~~ 85 (129)
+++++.|++++|.+ .|+-|+-.|-...
T Consensus 209 D~lLeI~~~yDVtl----SLGDglRPG~i~D 235 (431)
T PRK13352 209 DYLLEILKEYDVTL----SLGDGLRPGCIAD 235 (431)
T ss_pred HHHHHHHHHhCeee----eccCCcCCCcccc
Confidence 46899999999987 5777777775444
No 132
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=24.98 E-value=2.7e+02 Score=20.05 Aligned_cols=39 Identities=15% Similarity=-0.134 Sum_probs=26.3
Q ss_pred HHHHcCC-ccEEEec-CCCHHHHHHHHHHHHhcCCCCceEecccccc
Q psy5380 3 HAINQGW-IMYWGTS-RWSPVEIMEAYSNCRQFNCATPIIEQTEYHM 47 (129)
Q Consensus 3 ~l~~~G~-ir~iG~S-n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l 47 (129)
++.+.-. +..+||. |-+.+.+.++.+. .+++.+|++-..
T Consensus 45 ~i~~~v~~~~~VgVf~n~~~~~i~~i~~~------~~ld~VQlHG~e 85 (208)
T COG0135 45 EIASAVPKVKVVGVFVNESIEEILEIAEE------LGLDAVQLHGDE 85 (208)
T ss_pred HHHHhCCCCCEEEEECCCCHHHHHHHHHh------cCCCEEEECCCC
Confidence 3444444 7899986 5566666666654 468999998774
No 133
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.90 E-value=2.2e+02 Score=20.83 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHhcC
Q psy5380 19 SPVEIMEAYSNCRQFN 34 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~g 34 (129)
++.++.++.+..+..+
T Consensus 202 s~~~l~~l~~~ik~~~ 217 (266)
T cd01018 202 SPADLKRLIDLAKEKG 217 (266)
T ss_pred CHHHHHHHHHHHHHcC
Confidence 3445555555544444
No 134
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=24.84 E-value=2e+02 Score=20.71 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=28.1
Q ss_pred cCCCCceEecccccccccchhhccHHHHHHHhCCeeeee
Q psy5380 33 FNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAW 71 (129)
Q Consensus 33 ~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~ 71 (129)
.+...++++==+||++|+.. .-++.+..++.|+.++.-
T Consensus 181 ~~~~~Ivl~GrpY~~~D~~i-n~~I~~~l~~~G~~vit~ 218 (221)
T PF09989_consen 181 NGKPAIVLLGRPYNIYDPFI-NMGIPDKLRSLGVPVITE 218 (221)
T ss_pred cCCceEEEEcCCCcCCCccc-CCchHHHHHHCCCeeeCc
Confidence 34445666677899988875 567888888899888764
No 135
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins. This subfamily corresponds to a putative glycerophosphodiester phosphodiesterase domain (GDPD) present in Neurospora crassa ankyrin repeat protein NUC-2 and its Saccharomyces cerevisiae counterpart, Phosphate system positive regulatory protein PHO81. Some uncharecaterized NUC-2 sequence homologs are also included in this family. NUC-2 plays an important role in the phosphate-regulated signal transduction pathway in Neurospora crassa. It shows high similarity to a cyclin-dependent kinase inhibitory protein PHO81, which is part of the phosphate regulatory cascade in S. cerevisiae. Both NUC-2 and PHO81 have multi-domain architecture, including an SPX N-terminal domain following by several ankyrin repeats and a putative C-terminal GDPD domain with unknown function. Although the putative GDPD domain displays sequence homology to that of bacterial glycerophos
Probab=24.84 E-value=1.3e+02 Score=22.95 Aligned_cols=50 Identities=18% Similarity=0.068 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecc
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~sp 73 (129)
-....+++|...|...++..++ ++.+++...| .+++..++.|+-+++|..
T Consensus 226 ~r~~Si~~Av~fA~~~nL~Giv---~~~~~L~~~P---~lV~~ik~~GL~lv~~g~ 275 (300)
T cd08578 226 PRSRSIKEAVRFAKNNNLLGLI---LPYSLLNIVP---QLVESIKSRGLLLIASGE 275 (300)
T ss_pred chhhhHHHHHHHHHHcCCcEEE---ecHHHHhhCh---HHHHHHHHcCCEEEEECC
Confidence 3445688999999888764544 4566666654 578999999999999974
No 136
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=24.69 E-value=87 Score=18.75 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=19.4
Q ss_pred ccCHHHHHHHHHHHhhCCCCcchhh
Q psy5380 100 KLNAAVMGEVERVLDNKPARPPMVS 124 (129)
Q Consensus 100 ~~~~~~~~~l~~la~~~~~~~~~la 124 (129)
++++++.++++.+++..|.+.+-..
T Consensus 11 Rlp~E~~eRL~~Ls~~tgrtkayyv 35 (80)
T COG4710 11 RLPLELKERLDNLSKNTGRTKAYYV 35 (80)
T ss_pred eCCHHHHHHHHHHHHhcCCchhHHH
Confidence 5578899999999998888765443
No 137
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=24.34 E-value=1.4e+02 Score=17.84 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=37.4
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec-cccccccC
Q psy5380 2 NHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS-PISMALIS 80 (129)
Q Consensus 2 ~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s-pL~~G~Lt 80 (129)
+++.+.|++. +| ..+...+.+ .|..+.+++-..-+.-. ...+...|++++|.++-+. -..-|...
T Consensus 4 ~~~~ragkl~-~G-----~~~v~kai~----~gkaklViiA~D~~~~~----~~~i~~~c~~~~Vp~~~~~s~~eLG~a~ 69 (82)
T PRK13602 4 EKVSQAKSIV-IG-----TKQTVKALK----RGSVKEVVVAEDADPRL----TEKVEALANEKGVPVSKVDSMKKLGKAC 69 (82)
T ss_pred HHHHhcCCEE-Ec-----HHHHHHHHH----cCCeeEEEEECCCCHHH----HHHHHHHHHHcCCCEEEECCHHHHHHHH
Confidence 5667777642 23 233333332 24456777766666522 2357788999999887663 23334444
Q ss_pred CC
Q psy5380 81 GK 82 (129)
Q Consensus 81 gk 82 (129)
|+
T Consensus 70 G~ 71 (82)
T PRK13602 70 GI 71 (82)
T ss_pred CC
Confidence 44
No 138
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=24.30 E-value=74 Score=25.45 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=20.8
Q ss_pred ccHHHHHHHhCCeeeeeccccccccCCCccC
Q psy5380 55 LYMPELYNKIGVGMMAWSPISMALISGKIEE 85 (129)
Q Consensus 55 ~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~~ 85 (129)
+++++.|++++|.+ .|+-|+-.|-...
T Consensus 206 D~lLeI~~~yDVtl----SLGDglRPG~i~D 232 (423)
T TIGR00190 206 DYILEIAKEYDVTL----SLGDGLRPGCIAD 232 (423)
T ss_pred HHHHHHHHHhCeee----eccCCcCCCcccc
Confidence 46899999999987 5777777776444
No 139
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=24.07 E-value=2.6e+02 Score=22.45 Aligned_cols=61 Identities=21% Similarity=0.443 Sum_probs=38.5
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCC-CceEecccc--cccccchhh--------ccHHHHHHHhCCeeeeecc
Q psy5380 13 WGTSRWSPVEIMEAYSNCRQFNCA-TPIIEQTEY--HMFCRDKAE--------LYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 13 iG~Sn~~~~~~~~~~~~~~~~g~~-~~~~~q~~~--~l~~~~~~e--------~~~~~~~~~~gi~~~~~sp 73 (129)
|-.-..+...++++.+.++.+|+. .+.++..+| |+..+++.- .+-+..|.+.|+.++..-|
T Consensus 168 w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYlINLASpd~e~rekSv~~~~~eL~rA~~LGa~~VV~HP 239 (413)
T PTZ00372 168 WNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYLINLANPDKEKREKSYDAFLDDLQRCEQLGIKLYNFHP 239 (413)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCceecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECC
Confidence 334456778888888888888742 345566666 455443210 1235688888988887765
No 140
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=23.93 E-value=2.4e+02 Score=22.31 Aligned_cols=61 Identities=5% Similarity=-0.064 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHhcCCC---CceEecccccccccchh----h---ccHHHHHHHhCCeeeeecccccc
Q psy5380 17 RWSPVEIMEAYSNCRQFNCA---TPIIEQTEYHMFCRDKA----E---LYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 17 n~~~~~~~~~~~~~~~~g~~---~~~~~q~~~~l~~~~~~----e---~~~~~~~~~~gi~~~~~spL~~G 77 (129)
|-+.++..+..+.++...-. +..++-++||+..-..+ + ..+.+.++++||.+..+...+.-
T Consensus 283 NDs~e~A~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ps~~~i~~F~~~L~~~gi~vtiR~s~G~D 353 (371)
T PRK14461 283 NDHPEQAAALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGRSERERVTTFQRILTDYGIPCTVRVERGVE 353 (371)
T ss_pred CCCHHHHHHHHHHHcCCccccCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCceEEEeCCCCcC
Confidence 66777777777776532100 45678888888643211 1 23566788889998888777653
No 141
>PF09009 Exotox-A_cataly: Exotoxin A catalytic; InterPro: IPR015099 Prokaryotic exotoxin A catalyses the transfer of ADP ribose from nicotinamide adenine dinucleotide (NAD) to elongation factor-2 in eukaryotic cells, with subsequent inhibition of protein synthesis []. ; PDB: 2ZIT_B 3B82_F 1ZM3_D 1ZM9_F 1XK9_A 1ZM2_B 1ZM4_D 3B8H_F 1IKP_A 1AER_A ....
Probab=23.88 E-value=1.1e+02 Score=21.63 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=17.0
Q ss_pred EecCCCHHHHHHHHHHHHhcC
Q psy5380 14 GTSRWSPVEIMEAYSNCRQFN 34 (129)
Q Consensus 14 G~Sn~~~~~~~~~~~~~~~~g 34 (129)
|+.||+..+++.+.+...+.|
T Consensus 26 G~~NWT~q~L~~tHq~L~~~G 46 (236)
T PF09009_consen 26 GVTNWTYQELEATHQALTEEG 46 (236)
T ss_dssp EEET--HHHHHHHHHHHHCTT
T ss_pred ccccccHHHHHHHHHHHHhCc
Confidence 899999999999999888766
No 142
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=23.75 E-value=2.9e+02 Score=20.04 Aligned_cols=51 Identities=4% Similarity=0.028 Sum_probs=26.9
Q ss_pred ccHHHHHHHhCCeeeeeccccccccCCCccCCCCCCCCCccccccccCHHHHHHHHHHHhhCCCC
Q psy5380 55 LYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPAR 119 (129)
Q Consensus 55 ~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~ 119 (129)
.+++.-.-+.|+..+.-+.-+.| |...+.. ..++.+.++.+.++.++++..
T Consensus 124 ~~ll~e~i~~G~~aiIv~v~a~g-L~~~~LG-------------r~i~~e~i~~L~~~~~~~gvd 174 (223)
T TIGR00290 124 EKLMEEFVEEKFEARIIAVAAEG-LDESWLG-------------RRIDRKMIDELKKLNEKYGIH 174 (223)
T ss_pred HHHHHHHHHcCCeEEEEEEecCC-CChHHcC-------------CcccHHHHHHHHHHHhccCCC
Confidence 34555555667666555444444 2211111 134567777777776666543
No 143
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=23.68 E-value=92 Score=24.23 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-..||++.+..
T Consensus 293 ~I~~~A~~~~vPi~~~~~LAr~Ly~ 317 (347)
T TIGR00328 293 KIKEIARENNVPIVENPPLARALYR 317 (347)
T ss_pred HHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 4788999999999999999999864
No 144
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=23.50 E-value=2.1e+02 Score=19.99 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=9.9
Q ss_pred HHcCC-ccEEEecCCCHHHHHHHH
Q psy5380 5 INQGW-IMYWGTSRWSPVEIMEAY 27 (129)
Q Consensus 5 ~~~G~-ir~iG~Sn~~~~~~~~~~ 27 (129)
+..|+ |.+.| .+.+++.+.++.
T Consensus 107 ~~~G~~vi~lG-~~~p~~~l~~~~ 129 (201)
T cd02070 107 EANGFEVIDLG-RDVPPEEFVEAV 129 (201)
T ss_pred HHCCCEEEECC-CCCCHHHHHHHH
Confidence 33443 44455 344444444443
No 145
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=23.49 E-value=1.9e+02 Score=20.56 Aligned_cols=18 Identities=6% Similarity=-0.269 Sum_probs=13.0
Q ss_pred EEEecCCCHHHHHHHHHH
Q psy5380 12 YWGTSRWSPVEIMEAYSN 29 (129)
Q Consensus 12 ~iG~Sn~~~~~~~~~~~~ 29 (129)
.+=+|.|+...+..+.+.
T Consensus 136 ~v~~~SF~~~~L~~~~~~ 153 (237)
T cd08583 136 RVIPQIYNEEMYEAIMSI 153 (237)
T ss_pred eeEEEecCHHHHHHHHHh
Confidence 455788888888777665
No 146
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=23.42 E-value=32 Score=24.70 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=30.5
Q ss_pred CCeeeeeccccccccCCCccCCC-CCCCCCccccccccCHHHHHHHHHHHhhCCCCc
Q psy5380 65 GVGMMAWSPISMALISGKIEEFT-VPVYPKSSKLVPKLNAAVMGEVERVLDNKPARP 120 (129)
Q Consensus 65 gi~~~~~spL~~G~Ltgk~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~~ 120 (129)
|=-++.|.|+..+ |++.+.+ ..++...+...|.+--.-++.|.++|...|..-
T Consensus 134 gG~L~~YGPF~~~---G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l 187 (204)
T PF06080_consen 134 GGLLFLYGPFNRD---GKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLEL 187 (204)
T ss_pred CCEEEEeCCcccC---CEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCcc
Confidence 4458889998764 4444421 112222333344444455678999999888653
No 147
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=23.28 E-value=63 Score=24.06 Aligned_cols=44 Identities=11% Similarity=0.099 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeee
Q psy5380 19 SPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMA 70 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~ 70 (129)
++.|+.++..+ .-+++++..+++++.- -.++.+.+++.||.++.
T Consensus 118 D~yQI~~Ar~~-------GADavLLI~~~L~~~~-l~el~~~A~~LGm~~LV 161 (254)
T COG0134 118 DPYQIYEARAA-------GADAVLLIVAALDDEQ-LEELVDRAHELGMEVLV 161 (254)
T ss_pred CHHHHHHHHHc-------CcccHHHHHHhcCHHH-HHHHHHHHHHcCCeeEE
Confidence 45666666653 4577888888887663 34678888888887653
No 148
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=23.17 E-value=91 Score=24.27 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-.-||++.+..
T Consensus 293 ~Ir~iA~e~~VPiven~pLARaLY~ 317 (349)
T PRK12721 293 HIVKLAERNGIPVVENIPLARALFK 317 (349)
T ss_pred HHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 4678999999999999999999875
No 149
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=23.06 E-value=2.3e+02 Score=18.57 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=39.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccCCCcc
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIE 84 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk~~ 84 (129)
.+.....+.....+..+. .|...+...+.-...+ +.+...+.+.+.+++-++|=-.|...++..
T Consensus 8 ~~~~~~~~v~~~L~~~~~-ep~i~~~~~~~g~tii--e~le~~~~~~~faIvl~TpDD~~~~~~~~~ 71 (125)
T PF10137_consen 8 RDLAAAEAVERFLEKLGL-EPIIWHEQPNLGQTII--EKLEEAADSVDFAIVLFTPDDIGYSRGEEE 71 (125)
T ss_pred CCHHHHHHHHHHHHhCCC-ceEEeecCCCCCCchH--HHHHHHhccCCEEEEEEcccccccccCCcc
Confidence 555545555566665675 4444433336654443 356777778899999999877776665533
No 150
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=22.99 E-value=77 Score=19.70 Aligned_cols=13 Identities=15% Similarity=-0.158 Sum_probs=9.7
Q ss_pred hHHHHcCCccEEE
Q psy5380 2 NHAINQGWIMYWG 14 (129)
Q Consensus 2 ~~l~~~G~ir~iG 14 (129)
.+|+++|+++++.
T Consensus 32 ~eLq~~G~~~~lW 44 (91)
T PF02426_consen 32 QELQRQGKWRHLW 44 (91)
T ss_pred HHHHHCCeeeEEE
Confidence 4688889888753
No 151
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.79 E-value=2.8e+02 Score=19.88 Aligned_cols=27 Identities=11% Similarity=-0.094 Sum_probs=17.9
Q ss_pred HHHcCCccEEEecCCCHHHHHHHHHHH
Q psy5380 4 AINQGWIMYWGTSRWSPVEIMEAYSNC 30 (129)
Q Consensus 4 l~~~G~ir~iG~Sn~~~~~~~~~~~~~ 30 (129)
+.+.|.-+.+=++.|+.+.+.+..+..
T Consensus 128 l~~~~~~~~~~~~Sf~~~~l~~~~~~~ 154 (249)
T cd08561 128 IERYGAQDRVLVASFSDRVLRRFRRLC 154 (249)
T ss_pred HHHcCCCCcEEEEECCHHHHHHHHHHC
Confidence 344455566677788888877777653
No 152
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=22.49 E-value=40 Score=19.97 Aligned_cols=27 Identities=4% Similarity=-0.047 Sum_probs=21.8
Q ss_pred ccHHHHHHHhCCeeeeeccccccccCC
Q psy5380 55 LYMPELYNKIGVGMMAWSPISMALISG 81 (129)
Q Consensus 55 ~~~~~~~~~~gi~~~~~spL~~G~Ltg 81 (129)
+.++++++++|..+++-+|....+|..
T Consensus 45 ~~~l~~a~~~~~kv~p~C~y~~~~~~~ 71 (78)
T PF14542_consen 45 EAALDYARENGLKVVPTCSYVAKYFRR 71 (78)
T ss_dssp HHHHHHHHHTT-EEEETSHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEEECHHHHHHHHh
Confidence 356889999999999999999887753
No 153
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=22.34 E-value=1.5e+02 Score=26.38 Aligned_cols=56 Identities=11% Similarity=0.200 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccccCCCc
Q psy5380 22 EIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKI 83 (129)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~Ltgk~ 83 (129)
.|+++.+.|++.| .+.+---|.++..++ ++-+.|.+.||.+|.=.|=-.-+|-.|.
T Consensus 68 ~IdeII~iAk~~g---aDaIhPGYGfLSEn~---efA~~c~eaGI~FIGP~~e~ld~~GdKv 123 (1149)
T COG1038 68 SIDEIIRIAKRSG---ADAIHPGYGFLSENP---EFARACAEAGITFIGPKPEVLDMLGDKV 123 (1149)
T ss_pred cHHHHHHHHHHcC---CCeecCCcccccCCH---HHHHHHHHcCCEEeCCCHHHHHHhccHH
Confidence 4678888888755 688999999998775 5788999999999987777666666664
No 154
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=22.21 E-value=73 Score=15.55 Aligned_cols=14 Identities=7% Similarity=-0.064 Sum_probs=10.5
Q ss_pred ecCCCHHHHHHHHH
Q psy5380 15 TSRWSPVEIMEAYS 28 (129)
Q Consensus 15 ~Sn~~~~~~~~~~~ 28 (129)
-+||++|.++...+
T Consensus 14 ~~NFSaWV~dACr~ 27 (30)
T PF13132_consen 14 SGNFSAWVKDACRR 27 (30)
T ss_pred CcChHHHHHHHHHH
Confidence 67999998876543
No 155
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=22.11 E-value=2.5e+02 Score=21.31 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=38.9
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecc
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~sp 73 (129)
+|++.-.|. ..|=|.++++.+.++.+. ...+++|+..+..---..-..+...|+++|+.++.-+.
T Consensus 234 ~l~~~~~ipi~~dE~~~~~~~~~~~i~~------~~~d~v~~k~~~~GGi~~~~~i~~~a~~~g~~~~~~~~ 299 (357)
T cd03316 234 RLRQATSVPIAAGENLYTRWEFRDLLEA------GAVDIIQPDVTKVGGITEAKKIAALAEAHGVRVAPHGA 299 (357)
T ss_pred HHHHhCCCCEEeccccccHHHHHHHHHh------CCCCEEecCccccCCHHHHHHHHHHHHHcCCeEeccCC
Confidence 344443343 445566777777777653 24677777655532000013577899999999887653
No 156
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.81 E-value=1.1e+02 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.7
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-.-||++.+..
T Consensus 300 ~Ir~~A~e~~VPiven~pLARaLy~ 324 (386)
T PRK12468 300 RIRELGAEHRIPLLEAPPLARALFR 324 (386)
T ss_pred HHHHHHHHcCCcEEeCHHHHHHHHH
Confidence 4678999999999999999999875
No 157
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=21.80 E-value=3.4e+02 Score=20.04 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecccccc
Q psy5380 17 RWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMA 77 (129)
Q Consensus 17 n~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G 77 (129)
+.+.+.++++.+..........+++...+|..-....-+++.++|+++|+-++.=..-+.|
T Consensus 114 ~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~livD~a~~~g 174 (349)
T cd06454 114 HNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVDEAHSVG 174 (349)
T ss_pred CCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHHHHHHHcCCEEEEEcccccc
Confidence 4566777776653211112345555555554211111346889999999988854443333
No 158
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=21.77 E-value=2.7e+02 Score=21.39 Aligned_cols=97 Identities=8% Similarity=0.010 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCCCCceE-eccccccccc---------------c-hhhccHHHHHHHhCCeeeeeccccc-cccCC
Q psy5380 20 PVEIMEAYSNCRQFNCATPII-EQTEYHMFCR---------------D-KAELYMPELYNKIGVGMMAWSPISM-ALISG 81 (129)
Q Consensus 20 ~~~~~~~~~~~~~~g~~~~~~-~q~~~~l~~~---------------~-~~e~~~~~~~~~~gi~~~~~spL~~-G~Ltg 81 (129)
...++++.+.+++.++...++ +...+..+.- . ..-..+++.|+++||-+|++-+.-. -.|+.
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~la~ 91 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVLAE 91 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHHhh
Confidence 467888888888877654443 2222222111 0 0023578999999999999955433 34443
Q ss_pred CccCCC--CCCCC-----CccccccccCHHHHHHHHHHHhhC
Q psy5380 82 KIEEFT--VPVYP-----KSSKLVPKLNAAVMGEVERVLDNK 116 (129)
Q Consensus 82 k~~~~~--~~~~~-----~~~~~~~~~~~~~~~~l~~la~~~ 116 (129)
+...-. ...++ ....|..++++++.+-.-+||++.
T Consensus 92 ~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Ea 133 (316)
T PF13200_consen 92 AHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEA 133 (316)
T ss_pred hChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHH
Confidence 311101 11121 223477788888888777777653
No 159
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=21.69 E-value=1.9e+02 Score=24.21 Aligned_cols=101 Identities=9% Similarity=0.016 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHH-hCCeeeeeccccccc-----cCCCccCCCCCCCCCcc
Q psy5380 22 EIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNK-IGVGMMAWSPISMAL-----ISGKIEEFTVPVYPKSS 95 (129)
Q Consensus 22 ~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~-~gi~~~~~spL~~G~-----Ltgk~~~~~~~~~~~~~ 95 (129)
.+.+-.+..+.+|. ++++.=++|.- |.+.+-+.+.++|++ .|+.+..-...+.|= |..+....-. ..++++
T Consensus 381 NL~~Hi~n~~~fg~-pvVVaiN~F~~-Dt~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~e-~~s~fk 457 (578)
T PRK13506 381 NLKWHINNVAQYGL-PVVVAINRFPT-DTDEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRACE-QPSQFK 457 (578)
T ss_pred HHHHHHHHHHHcCC-CeEEEecCCCC-CCHHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHhh-CcCCCc
Confidence 34455666677885 44444444443 333322346789998 788888877776662 2222111000 011222
Q ss_pred ccccccCHHHHHHHHHHHhh-CCCCcchhhhc
Q psy5380 96 KLVPKLNAAVMGEVERVLDN-KPARPPMVSTL 126 (129)
Q Consensus 96 ~~~~~~~~~~~~~l~~la~~-~~~~~~~la~~ 126 (129)
..++ .+..+.++++.||++ +|..+...+..
T Consensus 458 ~LYd-~~~sI~eKIetIAkeIYGA~gVefS~~ 488 (578)
T PRK13506 458 LLYP-DEMSLEAKLMTLAEVGYGAAGVSLSDK 488 (578)
T ss_pred ccCC-CCCCHHHHHHHHHHHccCCCceEECHH
Confidence 2221 134577788888776 56555444433
No 160
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=21.55 E-value=24 Score=21.30 Aligned_cols=48 Identities=13% Similarity=0.072 Sum_probs=22.7
Q ss_pred hHHHHcCCccEEEec---CCCHHHHH---HHHHHHHhcCCCCceEeccccccccc
Q psy5380 2 NHAINQGWIMYWGTS---RWSPVEIM---EAYSNCRQFNCATPIIEQTEYHMFCR 50 (129)
Q Consensus 2 ~~l~~~G~ir~iG~S---n~~~~~~~---~~~~~~~~~g~~~~~~~q~~~~l~~~ 50 (129)
.++++.|+|.-.+.. -|+..++. .+.+.-...+ ..+..+.+-.+++++
T Consensus 18 ~~lve~Gli~p~~~~~~~~f~~~~l~rl~~~~rL~~Dl~-in~~gi~lil~LLd~ 71 (84)
T PF13591_consen 18 RELVEEGLIEPEGEEEEWYFSEEDLARLRRIRRLHRDLG-INLEGIALILDLLDR 71 (84)
T ss_pred HHHHHCCCeeecCCCCeeeECHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHH
Confidence 467777777665532 23444443 3333333333 233334444444443
No 161
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=21.41 E-value=2.6e+02 Score=18.64 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeecc
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSP 73 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~sp 73 (129)
.+...+.+..+.++..+. +..++=+++..-.+. ..++.+++++.|+.+++.-|
T Consensus 127 ~~~~~~~~~~~~l~~~~~-~~~vV~N~~~~~~~~--~~~~~~~~~~~~~~vl~~ip 179 (179)
T cd03110 127 SGLHDLERAVELVRHFGI-PVGVVINKYDLNDEI--AEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred ccHHHHHHHHHHHHHcCC-CEEEEEeCCCCCcch--HHHHHHHHHHcCCCeEEeCC
Confidence 344455555555555552 222322233221111 23466677777877766543
No 162
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.31 E-value=1.1e+02 Score=24.17 Aligned_cols=25 Identities=20% Similarity=0.399 Sum_probs=22.4
Q ss_pred HHHHHHHhCCeeeeeccccccccCC
Q psy5380 57 MPELYNKIGVGMMAWSPISMALISG 81 (129)
Q Consensus 57 ~~~~~~~~gi~~~~~spL~~G~Ltg 81 (129)
+.+.+++|||.++-.-||++-+...
T Consensus 301 IreiA~e~~Ipi~enppLARaLY~~ 325 (363)
T COG1377 301 IREIAKEHGIPIIENPPLARALYRQ 325 (363)
T ss_pred HHHHHHHcCCceecChHHHHHHHHh
Confidence 5689999999999999999998773
No 163
>PF03180 Lipoprotein_9: NLPA lipoprotein; InterPro: IPR004872 This family of bacterial lipoproteins contains several antigenic members, that may be involved in bacterial virulence. Their precise function is unknown. However they are probably distantly related to IPR001638 from INTERPRO which are solute binding proteins.; PDB: 4EF2_A 4EF1_B 3GXA_C 3IR1_D 3TQW_A 3K2D_B 3UP9_A 1XS5_A 1P99_A.
Probab=21.28 E-value=3.4e+02 Score=19.84 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=42.8
Q ss_pred EEEecCCCHHHH-HHHHHHHHhcCCCCceEecc-cccccccchh-----------hccHHHHHHHhCCeeeeeccc---c
Q psy5380 12 YWGTSRWSPVEI-MEAYSNCRQFNCATPIIEQT-EYHMFCRDKA-----------ELYMPELYNKIGVGMMAWSPI---S 75 (129)
Q Consensus 12 ~iG~Sn~~~~~~-~~~~~~~~~~g~~~~~~~q~-~~~l~~~~~~-----------e~~~~~~~~~~gi~~~~~spL---~ 75 (129)
-||++.-+...+ +.+.+.++..| ..+.+++. .|.-.+.... ..-+-.+.+++|-.+.+-.|. .
T Consensus 2 kIG~~~~~~~~i~~~v~~~~~~~G-i~vevv~f~D~~~~N~AL~~G~iDaN~fQh~~yl~~~n~~~~~~L~~v~~~~~~p 80 (237)
T PF03180_consen 2 KIGVTPGPDAEILEAVKEKLKKKG-IDVEVVEFSDYVQPNEALADGEIDANFFQHIPYLEQFNKENGYNLVPVGPTYIEP 80 (237)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHTT-EEEEEEEESSTTHHHHHHHTTSSSEEEEEEHHHHHHHHHHHT--EEEEEEEEE--
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcC-CeEEEEEecchhhcChHHHCCCcceeccCCHHHHHHHHHHCCCcEEEecceeEEe
Confidence 378876665554 44666677777 45555544 2322221110 113456777788655544333 3
Q ss_pred ccccCCCccCC-CCCCCCC
Q psy5380 76 MALISGKIEEF-TVPVYPK 93 (129)
Q Consensus 76 ~G~Ltgk~~~~-~~~~~~~ 93 (129)
.|+.+.||++- ..|.|..
T Consensus 81 ~glYS~k~~sl~~lp~Ga~ 99 (237)
T PF03180_consen 81 MGLYSKKYKSLDDLPDGAT 99 (237)
T ss_dssp -EEEESSSSSGGGS-TTEE
T ss_pred EEEeecccCchhhcCCCCE
Confidence 57999999883 5677654
No 164
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=21.21 E-value=1e+02 Score=25.92 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.+++|||.++-.-||++.+..
T Consensus 556 ~Ir~~A~e~~VPive~~~LAR~Ly~ 580 (609)
T PRK12772 556 KIKEIAKENDVPIIENKPLARLIYK 580 (609)
T ss_pred HHHHHHHHCCCcEEeCHHHHHHHHH
Confidence 4678999999999999999999875
No 165
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=21.15 E-value=2.2e+02 Score=17.71 Aligned_cols=55 Identities=16% Similarity=0.099 Sum_probs=26.7
Q ss_pred HHHcCC-ccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhC
Q psy5380 4 AINQGW-IMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIG 65 (129)
Q Consensus 4 l~~~G~-ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~g 65 (129)
|+..|. |.+.| ++.+++.+.++..- .+|+++.+-.+.-.....-.++.+.+++.+
T Consensus 23 l~~~G~~V~~lg-~~~~~~~l~~~~~~------~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 23 LRDAGFEVIDLG-VDVPPEEIVEAAKE------EDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHCCCEEEECC-CCCCHHHHHHHHHH------cCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 345563 56667 55666666555443 345555444443222211123455555553
No 166
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=21.08 E-value=1.2e+02 Score=23.74 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.6
Q ss_pred cHHHHHHHhCCeeeeeccccccccC
Q psy5380 56 YMPELYNKIGVGMMAWSPISMALIS 80 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~G~Lt 80 (129)
.+.+.++++||.++-.-||++.+..
T Consensus 300 ~i~~~A~~~~vpi~~~~~LAr~Ly~ 324 (359)
T PRK05702 300 KIREIAREHNVPIVENPPLARALYA 324 (359)
T ss_pred HHHHHHHHcCCCEEeCHHHHHHHHH
Confidence 4688999999999999999999874
No 167
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=21.05 E-value=3.6e+02 Score=22.49 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCC-----eeeeeccccccccCCCccCCC---C--
Q psy5380 19 SPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGV-----GMMAWSPISMALISGKIEEFT---V-- 88 (129)
Q Consensus 19 ~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi-----~~~~~spL~~G~Ltgk~~~~~---~-- 88 (129)
-++-++++.+.|+.+|| .++++|+. ++..+.+...|. |=.+.-++..==|+||-..+- .
T Consensus 271 ~~eli~~F~e~A~~~G~-r~~fy~vs----------~~~~p~y~d~Gl~~~klGEeA~Vdl~~Fsl~Gk~~~~~R~a~~r 339 (538)
T COG2898 271 WPELIWAFLELADRHGW-RPVFYGVS----------EEGAPLYADAGLRALKLGEEAVVDLANFSLSGKRMRGLRQAVNR 339 (538)
T ss_pred hHHHHHHHHHHHHhcCC-eeEEEEeC----------ccccHHHHhcCcceeeccceEEEehhhccccCcccccHHHHHHH
Confidence 35777899999999997 78887763 123455566664 334566666555677644420 0
Q ss_pred --CCCCCccccccccCHHHHHHHHHHHhh
Q psy5380 89 --PVYPKSSKLVPKLNAAVMGEVERVLDN 115 (129)
Q Consensus 89 --~~~~~~~~~~~~~~~~~~~~l~~la~~ 115 (129)
.++-...-..++..++.++++.++.+.
T Consensus 340 ~~r~G~tfeI~~~~~~~~~l~eL~~iSD~ 368 (538)
T COG2898 340 ADREGLTFEIVPPDQSPAELDELRAISDE 368 (538)
T ss_pred HHhcCcEEEEeCCccChHHHHHHHHhCHH
Confidence 000000111245567778888877664
No 168
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=20.93 E-value=2.7e+02 Score=21.37 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccccccc
Q psy5380 18 WSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPISMAL 78 (129)
Q Consensus 18 ~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL~~G~ 78 (129)
.+++.++++.+- + .+.+++..+.|+.-....-+++.+.|+++|+-++.=...+.++
T Consensus 124 ~d~~~l~~~i~~----~-tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~ 179 (366)
T PRK08247 124 ASLKAIEQAITP----N-TKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPV 179 (366)
T ss_pred CCHHHHHHhccc----C-ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 355656555421 1 4677788888885433224568899999999887655544443
No 169
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.78 E-value=2.2e+02 Score=17.45 Aligned_cols=21 Identities=10% Similarity=0.200 Sum_probs=12.3
Q ss_pred cHHHHHHHhCCeeeeeccccc
Q psy5380 56 YMPELYNKIGVGMMAWSPISM 76 (129)
Q Consensus 56 ~~~~~~~~~gi~~~~~spL~~ 76 (129)
++...|-+.|+.++.=-|++.
T Consensus 77 ~~~~~~l~~g~~v~~EKP~~~ 97 (120)
T PF01408_consen 77 EIAKKALEAGKHVLVEKPLAL 97 (120)
T ss_dssp HHHHHHHHTTSEEEEESSSSS
T ss_pred HHHHHHHHcCCEEEEEcCCcC
Confidence 344556666666666666654
No 170
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=20.71 E-value=3.3e+02 Score=19.48 Aligned_cols=17 Identities=6% Similarity=0.149 Sum_probs=13.9
Q ss_pred hccHHHHHHHhCCeeee
Q psy5380 54 ELYMPELYNKIGVGMMA 70 (129)
Q Consensus 54 e~~~~~~~~~~gi~~~~ 70 (129)
..+++++|+++||.+++
T Consensus 90 ~~~v~~~~~~~~i~~iP 106 (204)
T TIGR01182 90 TPELAKHAQDHGIPIIP 106 (204)
T ss_pred CHHHHHHHHHcCCcEEC
Confidence 45788999999998776
No 171
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=20.69 E-value=3.1e+02 Score=21.87 Aligned_cols=57 Identities=5% Similarity=-0.201 Sum_probs=36.0
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeeccc
Q psy5380 12 YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWSPI 74 (129)
Q Consensus 12 ~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~spL 74 (129)
..+-|-++.+++.++.+. .-.+++|+..+-+---..-..+..+|+.+||.++.-+..
T Consensus 301 ~aDEs~~t~~d~~~~i~~------~a~d~v~iK~~k~GGIt~a~kia~lA~~~Gi~~~~g~~~ 357 (408)
T TIGR01502 301 VADEWCNTVEDVKFFTDA------KAGHMVQIKTPDVGGVNNIARAIMYCKANGMGAYVGGTC 357 (408)
T ss_pred EecCCCCCHHHHHHHHHh------CCCCEEEeCccccCCHHHHHHHHHHHHHcCCEEEEeCCC
Confidence 345566777777777654 245667776654311001235788999999999986654
No 172
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=20.23 E-value=2.6e+02 Score=21.31 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=41.1
Q ss_pred HHHHcCCcc-EEEecCCCHHHHHHHHHHHHhcCCCCceEecccccccccchhhccHHHHHHHhCCeeeeec
Q psy5380 3 HAINQGWIM-YWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72 (129)
Q Consensus 3 ~l~~~G~ir-~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l~~~~~~e~~~~~~~~~~gi~~~~~s 72 (129)
+|++...|. ..|=|.++..++.++.+. ...+++|...+..--=..-..+...|+.+|+.+++.+
T Consensus 216 ~l~~~~~~pIa~gE~~~~~~~~~~~i~~------~a~d~i~~d~~~~GGit~~~~i~~~A~~~g~~~~~h~ 280 (341)
T cd03327 216 ELKKATGIPISTGEHEYTVYGFKRLLEG------RAVDILQPDVNWVGGITELKKIAALAEAYGVPVVPHA 280 (341)
T ss_pred HHHhcCCCCeEeccCccCHHHHHHHHHc------CCCCEEecCccccCCHHHHHHHHHHHHHcCCeecccc
Confidence 455555454 667788888888777663 2467778766553210012357789999999987754
No 173
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=20.20 E-value=2.4e+02 Score=21.26 Aligned_cols=42 Identities=12% Similarity=0.346 Sum_probs=31.5
Q ss_pred hHHHHcCCccEEEecCCCHHHHHHHHHHHHhcCCCCceEecccccc
Q psy5380 2 NHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHM 47 (129)
Q Consensus 2 ~~l~~~G~ir~iG~Sn~~~~~~~~~~~~~~~~g~~~~~~~q~~~~l 47 (129)
+.+.+.|+.-=||.+.|+.++++...+.++. -+++.-..||+
T Consensus 87 ~~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~----v~vv~a~NfSi 128 (266)
T COG0289 87 EFALEHGKPLVIGTTGFTEEQLEKLREAAEK----VPVVIAPNFSL 128 (266)
T ss_pred HHHHHcCCCeEEECCCCCHHHHHHHHHHHhh----CCEEEeccchH
Confidence 3456778888899999999999999998874 34555555544
No 174
>KOG2915|consensus
Probab=20.11 E-value=1.6e+02 Score=22.52 Aligned_cols=32 Identities=9% Similarity=0.091 Sum_probs=25.5
Q ss_pred EecCCCH--HHHHHHHHHHHhcCCCCceEecccc
Q psy5380 14 GTSRWSP--VEIMEAYSNCRQFNCATPIIEQTEY 45 (129)
Q Consensus 14 G~Sn~~~--~~~~~~~~~~~~~g~~~~~~~q~~~ 45 (129)
.+++|++ +++++.++.+...||..++.+.+.+
T Consensus 205 r~csFSPCIEQvqrtce~l~~~gf~~i~~vEv~~ 238 (314)
T KOG2915|consen 205 RLCSFSPCIEQVQRTCEALRSLGFIEIETVEVLL 238 (314)
T ss_pred eEEeccHHHHHHHHHHHHHHhCCCceEEEEEeeh
Confidence 6777776 8888999999999998888765544
Done!