RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5380
(129 letters)
>gnl|CDD|213602 TIGR01293, Kv_beta, voltage-dependent potassium channel beta
subunit, animal. This model describes the conserved
core region of the beta subunit of voltage-gated
potassium (Kv) channels in animals. Amino-terminal
regions differ substantially, in part by alternative
splicing, and are not included in the model. Four beta
subunits form a complex with four alpha subunit
cytoplasmic (T1) regions, and the structure of the
complex is solved. The beta subunit belongs to a family
of NAD(P)H-dependent aldo-keto reductases, binds NADPH,
and couples voltage-gated channel activity to the redox
potential of the cell. Plant beta subunits and their
closely related bacterial homologs (in Deinococcus
radiudurans, Xylella fastidiosa, etc.) appear more
closely related to each other than to animal forms.
However, the bacterial species lack convincing
counterparts the Kv alpha subunit and the Kv beta
homolog may serve as an enzyme. Cutoffs are set for this
model such that yeast and plant forms and bacterial
close homologs score between trusted and noise cutoffs.
Length = 317
Score = 161 bits (408), Expect = 4e-50
Identities = 56/95 (58%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M + INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 135 MTYVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 194
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSS 95
Y+KIGVG M WSP++ L+SGK + +P Y +++
Sbjct: 195 YHKIGVGAMTWSPLACGLVSGKYDS-GIPPYSRAT 228
>gnl|CDD|119408 cd06660, Aldo_ket_red, Aldo-keto reductases (AKRs) are a
superfamily of soluble NAD(P)(H) oxidoreductases whose
chief purpose is to reduce aldehydes and ketones to
primary and secondary alcohols. AKRs are present in all
phyla and are of importance to both health and
industrial applications. Members have very distinct
functions and include the prokaryotic
2,5-diketo-D-gluconic acid reductases and beta-keto
ester reductases, the eukaryotic aldose reductases,
aldehyde reductases, hydroxysteroid dehydrogenases,
steroid 5beta-reductases, potassium channel
beta-subunits and aflatoxin aldehyde reductases, among
others.
Length = 285
Score = 64.1 bits (157), Expect = 3e-13
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 5/92 (5%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+ + +G I G S +S ++ EA + P + Q EY++ R E +P
Sbjct: 133 LEELVKEGKIRAIGVSNFSAEQLEEALAAAG----VPPAVNQVEYNLLDRQAEEELLPYC 188
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYP 92
G+G++A+SP++ L++GK P
Sbjct: 189 REH-GIGVIAYSPLAGGLLTGKYLPGAPPPEG 219
>gnl|CDD|215817 pfam00248, Aldo_ket_red, Aldo/keto reductase family. This family
includes a number of K+ ion channel beta chain
regulatory domains - these are reported to have
oxidoreductase activity.
Length = 277
Score = 58.9 bits (143), Expect = 2e-11
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+ +G I + G S +S ++ EA + ++ Q EY + R E + L
Sbjct: 120 LEELKKEGKIRHIGVSNFSVEQLREA----LEHGKVPIVVVQVEYSLLRRLAEEGLLE-L 174
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNA 103
+ G+G++A+SP+ L++GK P L+ L
Sbjct: 175 CQENGIGIIAYSPLGGGLLTGKYTSEADPAPGDRRLLLEVLKE 217
>gnl|CDD|223739 COG0667, Tas, Predicted oxidoreductases (related to aryl-alcohol
dehydrogenases) [Energy production and conversion].
Length = 316
Score = 46.9 bits (112), Expect = 4e-07
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
++ + +G I Y G S +S +I EA A Q EY++ RD + +P L
Sbjct: 141 LDELVREGKIRYIGVSNYSAEQIAEA----LAV-AAPIDSLQPEYNLLERDAEKELLP-L 194
Query: 61 YNKIGVGMMAWSPISMALISGKI 83
+ G+G++A+SP++ L++GK
Sbjct: 195 CREEGIGLLAYSPLASGLLTGKY 217
>gnl|CDD|223729 COG0656, ARA1, Aldo/keto reductases, related to diketogulonate
reductase [General function prediction only].
Length = 280
Score = 38.4 bits (90), Expect = 4e-04
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+ +++G I G S + + E S + P + Q EYH + R PEL
Sbjct: 126 LEELVDEGLIRAIGVSNFGVEHLEELLSLAKV----KPAVNQIEYHPYLRQ------PEL 175
Query: 61 YN---KIGVGMMAWSPIS 75
+ G+ + A+SP++
Sbjct: 176 LPFCQRHGIAVEAYSPLA 193
>gnl|CDD|182140 PRK09912, PRK09912, L-glyceraldehyde 3-phosphate reductase;
Provisional.
Length = 346
Score = 35.7 bits (82), Expect = 0.003
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 3 HAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCR--DKAELYMPEL 60
HA+ G +Y G S +SP + R++ +I Q Y++ R DK+ L +
Sbjct: 155 HAVQSGKALYVGISSYSPERTQKMVELLREWKIPL-LIHQPSYNLLNRWVDKSGLL--DT 211
Query: 61 YNKIGVGMMAWSPISMALISGK 82
GVG +A++P++ L++GK
Sbjct: 212 LQNNGVGCIAFTPLAQGLLTGK 233
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 27.5 bits (62), Expect = 2.1
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 2 NHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTE 44
N ++N+G I WG + +++++A + F+ TP + E
Sbjct: 294 NLSLNEGAIAPWGNTNSYYLQMLQALAEHYGFDLDTPWKDLPE 336
>gnl|CDD|237078 PRK12366, PRK12366, replication factor A; Reviewed.
Length = 637
Score = 27.3 bits (61), Expect = 2.5
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 81 GKIEEFTVPVYP------KSSKLVPKLNAAVMGEVERVLDNK 116
K+E++ YP +L P L+A + GEV + K
Sbjct: 159 DKLEKYDESRYPIIKENYDIPELEPNLSATIEGEVTKAYPIK 200
>gnl|CDD|203845 pfam08060, NOSIC, NOSIC (NUC001) domain. This is the central
domain in Nop56/SIK1-like proteins.
Length = 52
Score = 25.2 bits (56), Expect = 3.2
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 32 QFNCATPIIEQT--EYHMFCRDKAELYMPELYNKI 64
Q I++ +HM R+ + PEL +
Sbjct: 3 QAIELLDDIDKEINLFHMRLREWYSWHFPELEKLV 37
>gnl|CDD|151195 pfam10699, HAP2-GCS1, Male gamete fusion factor. The gene
encoding Arabidopsis HAP2 is allelic with GCS1
(Generative cell-specific protein 1). HAP2 is expressed
only in the haploid sperm and is required for efficient
guidance of the pollen tube to the ovules. In
Arabidopsis the protein is a predicted membrane protein
with an N-terminal secretion signal, a single
transmembrane domain and a C-terminal histidine-rich
domain. HAP2-GCS1 is found from plants to lower
eukaryotes and is necessary for the fusion of the
gametes in fertilisation. It is involved in a novel
mechanism for gamete fusion where a first
species-specific protein binds male and female gamete
membranes together after which a second, broadly
conserved protein, either directly or indirectly,
causes fusion of the two membranes together. The
broadly conserved protein is represented by this
HAP2-GCS1 domain, conserved from plants to lower
eukaryotes. In Plasmodium berghei the protein is
expressed only in male gametocytes and gametes, having
a male-specific function during the interaction with
female gametes, and being indispensable for parasite
fertilisation. The gene in plants and eukaryotes might
well have originated from acquisition of plastids from
red algae.
Length = 49
Score = 25.3 bits (56), Expect = 3.3
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 62 NKIGVGMMAWS 72
+KIGV A+
Sbjct: 16 DKIGVSYSAFR 26
>gnl|CDD|197999 smart00931, NOSIC, NOSIC (NUC001) domain. This is the central
domain in Nop56/SIK1-like proteins.
Length = 52
Score = 24.4 bits (54), Expect = 6.9
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 45 YHMFCRDKAELYMPEL 60
+HM R+ + PEL
Sbjct: 18 FHMRVREWYSWHFPEL 33
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family. This family
includes initiation factor 2B alpha, beta and delta
subunits from eukaryotes, initiation factor 2B subunits
1 and 2 from archaebacteria and some proteins of unknown
function from prokaryotes. Initiation factor 2 binds to
Met-tRNA, GTP and the small ribosomal subunit. Members
of this family have also been characterized as
5-methylthioribose- 1-phosphate isomerases, an enzyme of
the methionine salvage pathway. The crystal structure of
Ypr118w, a non-essential, low-copy number gene product
from Saccharomyces cerevisiae, reveals a dimeric protein
with two domains and a putative active site cleft.
Length = 281
Score = 25.7 bits (57), Expect = 7.3
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 60 LYNKIGVGMMAWSPISMALISGKIEEFTVPVYP--KSSKLVPK 100
+ NKIG +A + K VP Y ++ K P+
Sbjct: 192 IANKIGTYQLA--------LLAK--AHNVPFYVVAETYKFDPR 224
>gnl|CDD|226821 COG4386, COG4386, Mu-like prophage tail sheath protein gpL [General
function prediction only].
Length = 487
Score = 25.9 bits (57), Expect = 8.4
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 86 FTVPVYPKSSKLVPKLNAAVMGEVERVLDNKPARPPMVSTLALR 129
T + + AA L PARP + TLAL
Sbjct: 281 ATCAWIHGAPEPAYIWAAAYAAVCAPSLGADPARP--LQTLALP 322
>gnl|CDD|178198 PLN02587, PLN02587, L-galactose dehydrogenase.
Length = 314
Score = 25.5 bits (56), Expect = 9.5
Identities = 10/26 (38%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 57 MPELYNKIGVGMMAWSPISMALISGK 82
+P L +K GVG+++ SP++M L++
Sbjct: 191 LPYLKSK-GVGVISASPLAMGLLTEN 215
>gnl|CDD|236540 PRK09495, glnH, glutamine ABC transporter periplasmic protein;
Reviewed.
Length = 247
Score = 25.5 bits (56), Expect = 9.7
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 91 YPKSSKLVPKLNAA 104
+PK S+L K+N A
Sbjct: 211 FPKGSELREKVNGA 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.133 0.422
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,541,177
Number of extensions: 550709
Number of successful extensions: 384
Number of sequences better than 10.0: 1
Number of HSP's gapped: 379
Number of HSP's successfully gapped: 21
Length of query: 129
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 43
Effective length of database: 7,123,158
Effective search space: 306295794
Effective search space used: 306295794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.0 bits)