RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5380
(129 letters)
>3lut_A Voltage-gated potassium channel subunit beta-2; voltage gating,
potassium channel, KV1.2, gating charges, no analysis,
ION transport; HET: NAP; 2.90A {Rattus norvegicus}
Length = 367
Score = 130 bits (328), Expect = 1e-37
Identities = 53/82 (64%), Positives = 63/82 (76%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 173 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 232
Query: 61 YNKIGVGMMAWSPISMALISGK 82
++KIGVG M WSP++ ++SGK
Sbjct: 233 FHKIGVGAMTWSPLACGIVSGK 254
Score = 35.3 bits (82), Expect = 0.002
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 93 KSSKLVPKLNAAVMGEVERVLDNKPARPP 121
+ +++PKL+++++ E++ +L NKP
Sbjct: 335 GAIQVLPKLSSSIVHEIDSILGNKPYSKK 363
>3eau_A Voltage-gated potassium channel subunit beta-2; kvbeta, cortisone,
NADPH, cytoplasm, ION transport, ionic channel, NADP,
phosphoprotein; HET: NDP PDN; 1.82A {Rattus norvegicus}
SCOP: c.1.7.1 PDB: 2r9r_A* 2a79_A* 3lnm_A* 1exb_A*
3eb4_A* 3eb3_A* 1qrq_A* 1zsx_A*
Length = 327
Score = 124 bits (315), Expect = 4e-36
Identities = 53/82 (64%), Positives = 63/82 (76%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
M H INQG MYWGTSRWS +EIMEAYS RQFN PI EQ EYHMF R+K E+ +PEL
Sbjct: 139 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 198
Query: 61 YNKIGVGMMAWSPISMALISGK 82
++KIGVG M WSP++ ++SGK
Sbjct: 199 FHKIGVGAMTWSPLACGIVSGK 220
Score = 31.4 bits (72), Expect = 0.057
Identities = 8/25 (32%), Positives = 20/25 (80%)
Query: 93 KSSKLVPKLNAAVMGEVERVLDNKP 117
+ +++PKL+++++ E++ +L NKP
Sbjct: 301 GAIQVLPKLSSSIVHEIDSILGNKP 325
>3n6q_A YGHZ aldo-keto reductase; TIM barrel, oxidoreductase; 1.80A
{Escherichia coli}
Length = 346
Score = 98.8 bits (247), Expect = 4e-26
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+ HA+ G +Y G S +SP + R++ +I Q Y++ R + + +
Sbjct: 153 LAHAVQSGKALYVGISSYSPERTQKMVELLREWKIP-LLIHQPSYNLLNRWVDKSGLLDT 211
Query: 61 YNKIGVGMMAWSPISMALISGK 82
GVG +A++P++ L++GK
Sbjct: 212 LQNNGVGCIAFTPLAQGLLTGK 233
>3erp_A Putative oxidoreductase; funded by the national institute of
allergy and infectious D of NIH contract number
HHSN272200700058C; 1.55A {Salmonella enterica subsp}
Length = 353
Score = 91.5 bits (228), Expect = 2e-23
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
++H + G +Y G S + +A +I Q +Y +F R E + L
Sbjct: 174 LDHLVRHGKALYVGISNYPADLARQAIDILEDLGTP-CLIHQPKYSLFERW-VEDGLLAL 231
Query: 61 YNKIGVGMMAWSPISMALISGK 82
+ GVG +A+SP++ ++ +
Sbjct: 232 LQEKGVGSIAFSPLAGGQLTDR 253
>1gve_A Aflatoxin B1 aldehyde reductase member 3; oxidoreductase, aldo-keto
reductase, succinic semialdehyde oxidoreductase, AKR7
family; HET: NAP CIT; 1.38A {Rattus norvegicus} SCOP:
c.1.7.1 PDB: 2clp_A* 2c91_A*
Length = 327
Score = 60.7 bits (148), Expect = 4e-12
Identities = 17/108 (15%), Positives = 41/108 (37%), Gaps = 1/108 (0%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+ +G + G S + E+ E + C++ P + Q Y+ R E +
Sbjct: 124 CHQLHQEGKFVELGLSNYVSWEVAEICTLCKKNGWIMPTVYQGMYNAITRQ-VETELFPC 182
Query: 61 YNKIGVGMMAWSPISMALISGKIEEFTVPVYPKSSKLVPKLNAAVMGE 108
G+ A++P++ L++G+ + S+ + + +
Sbjct: 183 LRHFGLRFYAFNPLAGGLLTGRYKYQDKDGKNPESRFFGNPFSQLYMD 230
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto
reductase family 7, SSA reductase, barrel; HET: FLC NDP;
2.4A {Homo sapiens}
Length = 360
Score = 56.1 bits (136), Expect = 1e-10
Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+G + G S ++ E+ E + C+ P + Q Y+ R E +
Sbjct: 157 CQRLHQEGKFVELGLSNYASWEVAEICTLCKSNGWILPTVYQGMYNATTRQ-VETELFPC 215
Query: 61 YNKIGVGMMAWSPISMALISGKI 83
G+ A++P++ L++GK
Sbjct: 216 LRHFGLRFYAYNPLAGGLLTGKY 238
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 53.7 bits (130), Expect = 9e-10
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+ G I Y G S + +M + + + Q Y + R E+ + E+
Sbjct: 164 LAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS-FEVGLAEV 222
Query: 61 YNKIGVGMMAWSPISMALISGK 82
GV ++A+S + ++GK
Sbjct: 223 SQYEGVELLAYSCLGFGTLTGK 244
>1ynp_A Oxidoreductase, AKR11C1; aldo-keto reductase, NADPH; HET: SUC;
1.25A {Bacillus halodurans} PDB: 1ynq_A*
Length = 317
Score = 49.5 bits (119), Expect = 3e-08
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
+G I Y+G S P I E + +Y + R E P L
Sbjct: 154 FEELKQEGVIRYYGISSIRPNVIKEYLKRSN------IVSIMMQYSILDRRPEEW-FP-L 205
Query: 61 YNKIGVGMMAWSPISMALISGKI 83
+ GV ++ P++ L+S +
Sbjct: 206 IQEHGVSVVVRGPVARGLLSRRP 228
>1pz1_A GSP69, general stress protein 69; beta-alpha barrel, aldo-keto
reductase, TIM barrel, oxidoreductase; HET: NAP; 2.20A
{Bacillus subtilis} SCOP: c.1.7.1
Length = 333
Score = 48.7 bits (117), Expect = 6e-08
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 15/87 (17%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPII-EQTEYHMFCRDKAELYMP- 58
M + G I G S +S ++ + P+ Q Y++F R+ E +P
Sbjct: 140 MKELYDAGKIRAIGVSNFSIEQMDTFRA-------VAPLHTIQPPYNLFEREMEESVLPY 192
Query: 59 --ELYNKIGVGMMAWSPISMALISGKI 83
+ + + + + L++GK+
Sbjct: 193 AKDN----KITTLLYGSLCRGLLTGKM 215
>1pyf_A IOLS protein; beta-alpha barrel, aldo-keto reductase, TIM barrel,
oxidoreductase; 1.80A {Bacillus subtilis} SCOP: c.1.7.1
PDB: 1pz0_A*
Length = 312
Score = 45.6 bits (109), Expect = 7e-07
Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 15/91 (16%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMP- 58
+N G I G S +S ++ EA + + Q EY++ R+ + + P
Sbjct: 140 LNEMKKAGKIRSIGVSNFSLEQLKEANKDG-------LVDVLQGEYNLLNREAEKTFFPY 192
Query: 59 --ELYNKIGVGMMAWSPISMALISGKIEEFT 87
E + + + P+ L++GK E T
Sbjct: 193 TKEH----NISFIPYFPLVSGLLAGKYTEDT 219
>3v0s_A Perakine reductase; AKR superfamily, oxidoreductase; HET: MLZ M3L
MLY ATR; 1.77A {Rauvolfia serpentina} PDB: 3v0u_A
3v0t_A* 3uyi_A*
Length = 337
Score = 45.3 bits (107), Expect = 9e-07
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMPE 59
+ + +G I Y G S SP I A++ P+ Q EY ++ RD + +P
Sbjct: 141 LXXLVEEGKIXYVGLSEASPDTIRRAHAVH-------PVTALQIEYSLWTRDIEDEIVPL 193
Query: 60 LYNKIGVGMMAWSPISMALISGKIEEFTVP------VYPKSSKLVPKLNAAVMGEVERVL 113
++G+G++ +SPI L GK + ++P +P+ + N + +E +
Sbjct: 194 C-RQLGIGIVPYSPIGRGLFWGKAIKESLPENSVLTSHPRFVGENLEKNKQIYYRIEALS 252
Query: 114 DNKPARPPMVSTLAL 128
P LAL
Sbjct: 253 QKHGCTP---VQLAL 264
>3n2t_A Putative oxidoreductase; aldo/keto reductase superfamily, AKR,
AKR11B4, TIM barrel; 2.00A {Gluconobacter oxydans}
Length = 348
Score = 42.2 bits (100), Expect = 1e-05
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 15/83 (18%)
Query: 5 INQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPI-IEQTEYHMFCRDKAELYMP---EL 60
G I G S +SP ++ F P+ Q ++F R + +P +
Sbjct: 165 HQDGKIRALGVSNFSPEQM-------DIFREVAPLATIQPPLNLFERTIEKDILPYAEKH 217
Query: 61 YNKIGVGMMAWSPISMALISGKI 83
++A+ + L++GK+
Sbjct: 218 ----NAVVLAYGALCRGLLTGKM 236
>1ur3_M Hypothetical oxidoreductase YDHF; NADP binding, aldo-keto
reductase; 2.57A {Escherichia coli} SCOP: c.1.7.1 PDB:
1og6_A*
Length = 319
Score = 37.6 bits (88), Expect = 4e-04
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 1 MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIE-QTEYHMFCRDKAELYMPE 59
H G + ++G S ++P + S + Q E + +
Sbjct: 164 FKHLHQSGKVRHFGVSNFTPAQFALLQSRLPF-----TLATNQVEISPVHQPLLLDGTLD 218
Query: 60 LYNKIGVGMMAWSP 73
++ V MAWS
Sbjct: 219 QLQQLRVRPMAWSC 232
>1vp5_A 2,5-diketo-D-gluconic acid reductase; TM1009, structural genomics,
joint center for structural genomics, PSI, protein
structure initiative; HET: NAP; 2.40A {Thermotoga
maritima} SCOP: c.1.7.1
Length = 298
Score = 27.9 bits (63), Expect = 0.89
Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 9/55 (16%)
Query: 37 TPIIEQTEYHMFC-RDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPV 90
P + Q E H F R + +M + AW P G+ F V
Sbjct: 169 VPAVNQIEIHPFYQRQEEIEFMRNY----NIQPEAWGP----FAEGRKNIFQNGV 215
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161,
NYSGXRC, target T1522, structural genomics, PSI; 1.70A
{Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Length = 382
Score = 28.0 bits (63), Expect = 0.93
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 54 ELYMPELYNKIGVGMMAWSPISMAL--ISGKIEEFTVPVY 91
+L + + + + + AL ++G+ PVY
Sbjct: 84 DLAHWQRGSAAQLTDRTLAVVDCALWDLAGRS--LGQPVY 121
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium
binding site, lyase; 1.90A {Shewanella pealeana}
Length = 374
Score = 27.6 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G G+ A S I +AL I+G+ + VPV+
Sbjct: 98 GAGIHAISAIDIALWDIAGQF--YGVPVH 124
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo
sapiens}
Length = 441
Score = 27.5 bits (61), Expect = 1.5
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
GV +A + + A+ + K E PV+
Sbjct: 110 GVVHLATAAVLNAVWDLWAKQEG--KPVW 136
>3stp_A Galactonate dehydratase, putative; PSI biology, structural
genomics, NEW YORK structural genomi research
consortium; 1.88A {Labrenzia aggregata iam 12614} PDB:
3sqs_A 3ssz_A
Length = 412
Score = 26.8 bits (60), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+GM A S I +A+ + GK+ PV+
Sbjct: 131 GIGMTAISAIDIAIWDLMGKL--VGKPVF 157
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC,
muconate lactonizing EN structural genomics, protein
structure initiative; 2.10A {Shewanella pealeana}
Length = 394
Score = 26.9 bits (60), Expect = 2.1
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+G+ A S I MAL ++GK VP Y
Sbjct: 96 GLGLFAISGIDMALYDLAGKQ--LGVPAY 122
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function
initiative, isomerase; 2.00A {Pectobacterium carotovorum
subsp}
Length = 426
Score = 26.8 bits (60), Expect = 2.4
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
V M A S + MAL I K +P+Y
Sbjct: 102 PVTMSAISAVDMALWDIKAKA--ANMPLY 128
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 26.4 bits (59), Expect = 2.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
V M A + + MAL I K+ +P+Y
Sbjct: 96 PVTMRAIAAVDMALWDIKAKM--AGMPLY 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.6 bits (58), Expect = 2.9
Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 26/89 (29%)
Query: 7 QGWI-MYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIG 65
QG Y+ E+ + Y +I+ + + + L +++ + G
Sbjct: 163 QGNTDDYFE-------ELRDLYQTYHVL--VGDLIKFSAETLSELIRTTLDAEKVFTQ-G 212
Query: 66 VGMMAW---------------SPISMALI 79
+ ++ W PIS LI
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLI 241
Score = 26.2 bits (57), Expect = 4.2
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 65 GVGMMAWSPISMALISGK--IEEFTVPVYPKSSKLV 98
GM+A +P +A + ++ V ++ LV
Sbjct: 1806 NYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily
member, M-xylarate, U function; HET: DXL; 1.30A
{Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Length = 389
Score = 26.5 bits (59), Expect = 3.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
VG+ A S + +AL + G+ P+Y
Sbjct: 101 SVGIAAMSGVDIALWDLKGRA--MNQPIY 127
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase
like fold, nysgxrc target T1523, PSI, protein structure
initiative; 1.86A {Bradyrhizobium japonicum} SCOP:
c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Length = 392
Score = 26.2 bits (58), Expect = 3.1
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G +A I MA+ KI P++
Sbjct: 110 GERSVAVGTIDMAVWDAVAKIAG--KPLF 136
>2qgy_A Enolase from the environmental genome shotgun sequencing of the
sargasso SEA; structural genomics, unknown function,
PSI-2; 1.80A {Environmental sample}
Length = 391
Score = 26.5 bits (59), Expect = 3.2
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 54 ELYMPELYNKIGVGMMAWSPISMAL--ISGKIEEFTVPVY 91
++ + ++ A S I +AL ISGK++ +P+
Sbjct: 88 KISLLSDGHRGLDFSSATSAIEIALWDISGKLKN--LPLN 125
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 26.2 bits (58), Expect = 3.3
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ + S I +AL + GK+ PVY
Sbjct: 127 GLPIAVISVIDLALWDLLGKVRN--EPVY 153
>3up8_A Putative 2,5-diketo-D-gluconic acid reductase B; nysgrc,
PSI-biology, structural genomics; 1.96A {Sinorhizobium
meliloti}
Length = 298
Score = 26.0 bits (58), Expect = 3.4
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 11/56 (19%)
Query: 36 ATPIIEQTEYH-MFCRDKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPV 90
A Q EYH + K L G+ + ++ + +GK+ P+
Sbjct: 174 APIATNQVEYHPYLDQTKVLQTARRL----GMSLTSYYA----MANGKV--PADPL 219
>2ozb_B U4/U6 small nuclear ribonucleoprotein PRP31; RNA-protein complex,
ribonucleoprotein particle (RNP), PRE-M splicing, U4/U6
DI-snRNA, U4/U6 DI-snRNP; 2.60A {Homo sapiens} SCOP:
a.183.1.1 PDB: 3siu_B 3siv_B
Length = 260
Score = 26.2 bits (57), Expect = 3.6
Identities = 17/49 (34%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 14 GTSRWSPVEIMEAYSNCRQFNCATPIIEQT--EYHMFCRDKAELYMPEL 60
G+ PVE Y N T IE H F RDK PEL
Sbjct: 4 GSEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPEL 52
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function
initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio
japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A*
3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Length = 424
Score = 26.0 bits (58), Expect = 3.6
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
VGM A + I +AL I K+ +P+Y
Sbjct: 102 PVGMTALAAIDVALWDIKAKL--ANMPLY 128
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Length = 394
Score = 26.1 bits (58), Expect = 3.8
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+GM A S I MAL ++GK VP Y
Sbjct: 101 GLGMFALSGIDMALYDLAGKQ--LGVPAY 127
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function
initiative, EFI, lyase; 1.50A {Agrobacterium
tumefaciens}
Length = 372
Score = 26.1 bits (58), Expect = 4.0
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ +A + + +AL I K VP++
Sbjct: 101 GITHLALAAVDVALWDIKAKKAG--VPLW 127
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative;
1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Length = 398
Score = 26.1 bits (58), Expect = 4.2
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
+G A + + +A GK V
Sbjct: 112 YLGYAAIAAVDVACWDAMGKA--TGQSVT 138
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2;
HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB:
2oz3_A*
Length = 404
Score = 25.8 bits (57), Expect = 4.5
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ + S + +AL + GK+ PV+
Sbjct: 121 GLVINTISGVDLALWDLLGKVRR--EPVH 147
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics,
isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB:
2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Length = 409
Score = 25.7 bits (57), Expect = 4.7
Identities = 9/29 (31%), Positives = 9/29 (31%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
GV I AL K VP Y
Sbjct: 82 GVVSEGIGAIENALLDAKAKT--LNVPCY 108
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha
proteobacterium BAL199}
Length = 390
Score = 25.7 bits (57), Expect = 4.7
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ M+A S + MA+ + +P+
Sbjct: 122 GLSMIAASGVDMAVWDALARAAN--MPLC 148
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A
{Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Length = 398
Score = 25.7 bits (57), Expect = 5.0
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ + A SPI +AL + K +P+
Sbjct: 126 GMAVQAISPIDIALWDMKAKRAG--LPLA 152
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site,
lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Length = 445
Score = 25.8 bits (57), Expect = 5.1
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 50 RDKAELYMPELYNKIGVGMMAWSPISMAL--ISGKIEEFTVPVY 91
R + + V +SP +A + G++ PV
Sbjct: 115 RTGDGSGLAGMITSASVVDRVFSPFEVACLDVQGQV--TGRPVS 156
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein
structure initiative (PSI) II, PSI-2, 9382A mandelate
racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Length = 393
Score = 25.7 bits (57), Expect = 5.3
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ A +AL + K + +
Sbjct: 113 GLSTQAIGAFDVALWDLKAKRAG--LSLA 139
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 25.7 bits (57), Expect = 5.5
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
V M A + + MAL I GK+ +PVY
Sbjct: 103 PVAMTALAAVDMALWDIKGKV--AGLPVY 129
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI,
protein structure initiat YORK structural genomics
research consortium; 1.80A {Salmonella typhimurium LT2}
PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Length = 415
Score = 25.8 bits (57), Expect = 5.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ M S + +AL + GK+ +PVY
Sbjct: 133 GLVMNTISCVDLALWDLFGKVVG--LPVY 159
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein;
structural genomics, protein structure initiative; HET:
RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Length = 433
Score = 25.8 bits (57), Expect = 5.7
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
+ A+S + +A I GK PV+
Sbjct: 89 LTAIGAFSGLEIACWDILGKA--RGRPVW 115
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase,
magnesium binding site, lyase; HET: P4C; 1.80A
{Bradyrhizobium SP} PDB: 3tte_A*
Length = 383
Score = 25.7 bits (57), Expect = 5.8
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G+ MA S + MA G++ PV
Sbjct: 121 GLVGMAVSGLDMAFWDALGQLAG--KPVV 147
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for
infectious disease, S aminoacylation, tRNA activation,
charged tRNA; HET: HIS; 2.65A {Burkholderia
thailandensis}
Length = 467
Score = 25.3 bits (56), Expect = 6.4
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 6/39 (15%)
Query: 15 TSRWSPVEIMEAYSNCRQFNCA---TPIIEQTEYHMFCR 50
W E S R + TPI+E T +F R
Sbjct: 46 AGLWEFFE-ATVKSLLRAYGYQNIRTPIVEHTP--LFTR 81
>3no1_A Isomerase, mandelate racemase/muconate lactonizing enzyme;
enolase,metal-binding,PSI-II, NYSGXRC, structural
genomics; 2.16A {Marine actinobacterium} PDB: 3msy_A
Length = 398
Score = 25.4 bits (56), Expect = 6.6
Identities = 6/29 (20%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
+G++A + ++ A+ GK + +P++
Sbjct: 118 RLGLVALAAVNTAIWDAVGKALK--MPLW 144
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Length = 371
Score = 25.3 bits (56), Expect = 6.7
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
G A S + +AL + G P++
Sbjct: 98 GHATSAISAVDIALWDLKGIRAR--TPLW 124
>1htt_A Histidyl-tRNA synthetase; complex (tRNA
synthetase/His-adenylate), aminoacyl-tRNA synthase,
ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP:
c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Length = 423
Score = 25.2 bits (56), Expect = 7.5
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 15 TSRWSPVEIMEAYSNCRQFNCA---TPIIEQTEYHMFCR 50
T+ W +E + + + PI+EQT +F R
Sbjct: 18 TAIWQRIE-GTLKNVLGSYGYSEIRLPIVEQTP--LFKR 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 7.5
Identities = 10/88 (11%), Positives = 28/88 (31%), Gaps = 20/88 (22%)
Query: 18 WSPVEIMEAYS-NC------RQFNCATPIIEQTEYHMFCRDKAELYMPE-----LYNKIG 65
+ + A++ +C R + T H+ + P+ L +
Sbjct: 254 QNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 66 VG-------MMAWSPISMALISGKIEEF 86
++ +P +++I+ I +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDG 340
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural
genomics, PSI-2, protein struc initiative; 2.70A
{Polaromonas SP}
Length = 428
Score = 25.0 bits (55), Expect = 8.3
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
+A S I MAL I GK +P+Y
Sbjct: 136 AGAALAISGIDMALWDIRGKA--ANMPLY 162
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily;
structural genomics, predicted mandelate racemase, PSI;
2.02A {Rhodobacter sphaeroides}
Length = 401
Score = 25.0 bits (55), Expect = 8.6
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 65 GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
S I MAL + G+ P +
Sbjct: 97 LQAPHMLSGIEMALWDLLGRRLS--APAW 123
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet,
ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1
d.104.1.1
Length = 420
Score = 25.2 bits (56), Expect = 8.7
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 6/39 (15%)
Query: 15 TSRWSPVEIMEAYSNCRQFNCA---TPIIEQTEYHMFCR 50
+ +W +E + +N TPI E T+ +F R
Sbjct: 16 SKKWRYIE-NQLDELMTFYNYKEIRTPIFESTD--LFAR 51
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase,
ATP + L-histidine tRNA(His)-> AMP + PPI +
L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Length = 421
Score = 24.8 bits (55), Expect = 8.9
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 6/39 (15%)
Query: 15 TSRWSPVEIMEAYSNCRQFNCA---TPIIEQTEYHMFCR 50
+ A TPI E+T+ +F +
Sbjct: 17 LRMHQRIV-ATARKVLEAAGALELVTPIFEETQ--VFEK 52
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel,
octamer, structural genomics, PSI; 1.80A {Bacillus
subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Length = 382
Score = 24.9 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 60 LYNKI-GVGMMAWSPISMAL--ISGKIEEFTVPVY 91
L I A S +SMAL I+ K + V
Sbjct: 81 LVRTIQKWHQRAASAVSMALTEIAAKAAD--CSVC 113
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial
agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane
protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP:
c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A*
1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A*
1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A
1my0_A ...
Length = 263
Score = 25.0 bits (54), Expect = 9.4
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 13 WGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPELYNKIGVGMMAWS 72
+GT + S F+ + E +F R AE +K + S
Sbjct: 135 YGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGKYAYLLES 194
Query: 73 PISMALISGK-------IEEFTVPVY----PKSSKLVPKLNAAV 105
++ + K Y PK S L +N AV
Sbjct: 195 TMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAV 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.422
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,022,284
Number of extensions: 107738
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 246
Number of HSP's successfully gapped: 62
Length of query: 129
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 46
Effective length of database: 4,384,350
Effective search space: 201680100
Effective search space used: 201680100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.8 bits)