RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5380
         (129 letters)



>d1lqaa_ c.1.7.1 (A:) Tas protein {Escherichia coli [TaxId: 562]}
          Length = 346

 Score = 48.0 bits (113), Expect = 4e-08
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 1/89 (1%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           +      G I Y G S  +   +M       + +    +  Q  Y +  R   E+ + E+
Sbjct: 164 LAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRS-FEVGLAEV 222

Query: 61  YNKIGVGMMAWSPISMALISGKIEEFTVP 89
               GV ++A+S +    ++GK      P
Sbjct: 223 SQYEGVELLAYSCLGFGTLTGKYLNGAKP 251


>d3eaua1 c.1.7.1 (A:36-361) Voltage-dependent K+ channel beta
           subunit {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 326

 Score = 36.9 bits (84), Expect = 3e-04
 Identities = 53/85 (62%), Positives = 64/85 (75%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           M H INQG  MYWGTSRWS +EIMEAYS  RQFN   PI EQ EYHMF R+K E+ +PEL
Sbjct: 138 MTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPEL 197

Query: 61  YNKIGVGMMAWSPISMALISGKIEE 85
           ++KIGVG M WSP++  ++SGK + 
Sbjct: 198 FHKIGVGAMTWSPLACGIVSGKYDS 222



 Score = 25.4 bits (54), Expect = 2.8
 Identities = 8/25 (32%), Positives = 20/25 (80%)

Query: 93  KSSKLVPKLNAAVMGEVERVLDNKP 117
            + +++PKL+++++ E++ +L NKP
Sbjct: 300 GAIQVLPKLSSSIVHEIDSILGNKP 324


>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 315

 Score = 29.5 bits (65), Expect = 0.11
 Identities = 11/74 (14%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 1   MNHAINQGWIMYWGTSRWSPVEIMEAYSNCRQFNCATPIIEQTEYHMFCRDKAELYMPEL 60
           M    + G     G S ++  ++    +         P+  Q E H +      L   + 
Sbjct: 146 MEKCKDAGLAKSIGVSNFNRRQLEMILNKPGL--KYKPVCNQVECHPYFNRSKLL---DF 200

Query: 61  YNKIGVGMMAWSPI 74
                + ++A+S +
Sbjct: 201 CKSKDIVLVAYSAL 214


>d2al1a2 d.54.1.1 (A:1-141) Enolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 141

 Score = 24.5 bits (53), Expect = 3.5
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 51  DKAELYMPELYNKIGVGMMAWSPISMALISGKIEEFTVPVY 91
           D   + +    NK  +G  A   +S+A       E  VP+Y
Sbjct: 90  DDFLISLDGTANKSKLGANAILGVSLAASRAAAAEKNVPLY 130


>d2nn6i1 b.40.4.5 (I:61-185) Exosome component 1, EXOSC1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 125

 Score = 24.1 bits (52), Expect = 4.9
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 95  SKLVPKLNAAVMGEVERVLDNK 116
           S+L+P + A V  +V  +    
Sbjct: 1   SQLLPDVGAIVTCKVSSINSRF 22


>d1l7la_ b.18.1.16 (A:) PA-IL, galactose-binding lectin 1
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 121

 Score = 23.5 bits (50), Expect = 6.9
 Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 3/36 (8%)

Query: 5  INQGWIMYWGTSRWSPV---EIMEAYSNCRQFNCAT 37
          +  GW  Y  T +W P    E  +    C    C  
Sbjct: 29 VAAGWASYGPTQKWGPQGDREHPDQGLICHDAFCGA 64


>d2ozbb1 a.183.1.1 (B:85-333) U4/U6 small nuclear
          ribonucleoprotein Prp31 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 249

 Score = 23.6 bits (51), Expect = 8.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)

Query: 45 YHMFCRDKAELYMPEL 60
           H F RDK     PEL
Sbjct: 26 IHKFIRDKYSKRFPEL 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.422 

Gapped
Lambda     K      H
   0.267   0.0421    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 509,829
Number of extensions: 21776
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 13
Length of query: 129
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 53
Effective length of database: 1,364,116
Effective search space: 72298148
Effective search space used: 72298148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)