Query psy5383
Match_columns 143
No_of_seqs 160 out of 1099
Neff 6.2
Searched_HMMs 46136
Date Sat Aug 17 01:10:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00480 serine/threonine-prot 100.0 2.4E-36 5.3E-41 252.0 12.7 116 4-120 188-304 (320)
2 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 5.9E-36 1.3E-40 246.2 12.5 113 4-118 172-285 (285)
3 PTZ00244 serine/threonine-prot 100.0 6.1E-36 1.3E-40 247.1 11.7 113 3-116 180-293 (294)
4 KOG0372|consensus 100.0 1.6E-37 3.5E-42 250.1 2.1 118 4-123 173-291 (303)
5 PTZ00239 serine/threonine prot 100.0 1.5E-35 3.3E-40 245.7 12.9 117 3-121 172-290 (303)
6 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.5E-35 3.2E-40 244.7 11.5 113 4-117 179-292 (293)
7 cd07417 MPP_PP5_C PP5, C-termi 100.0 3.5E-35 7.6E-40 244.7 12.5 115 4-120 191-307 (316)
8 KOG0374|consensus 100.0 5.4E-35 1.2E-39 244.8 12.8 114 3-117 189-303 (331)
9 smart00156 PP2Ac Protein phosp 100.0 1.3E-34 2.8E-39 236.5 11.9 113 4-117 157-270 (271)
10 cd07416 MPP_PP2B PP2B, metallo 100.0 1.1E-33 2.5E-38 234.5 12.7 116 3-120 171-300 (305)
11 cd07420 MPP_RdgC Drosophila me 100.0 1.4E-33 3E-38 235.6 11.1 98 18-115 223-321 (321)
12 cd07419 MPP_Bsu1_C Arabidopsis 100.0 2.8E-33 6E-38 232.6 12.7 114 3-116 190-311 (311)
13 cd07418 MPP_PP7 PP7, metalloph 100.0 1.2E-31 2.7E-36 227.7 11.4 116 4-120 226-369 (377)
14 KOG0373|consensus 100.0 1E-32 2.2E-37 220.2 3.4 116 3-120 175-292 (306)
15 KOG0376|consensus 99.9 1.3E-27 2.9E-32 206.1 6.8 115 4-120 345-461 (476)
16 KOG0371|consensus 99.9 7E-28 1.5E-32 195.5 1.4 118 4-123 190-308 (319)
17 KOG0375|consensus 99.9 1.2E-27 2.6E-32 201.6 0.1 115 4-120 217-345 (517)
18 KOG0377|consensus 99.9 2.1E-26 4.6E-31 197.7 3.4 121 17-137 331-452 (631)
19 cd00144 MPP_PPP_family phospho 99.1 5.4E-10 1.2E-14 86.9 8.9 82 17-102 142-224 (225)
20 COG0639 ApaH Diadenosine tetra 97.8 4E-05 8.7E-10 54.0 5.4 76 14-91 77-154 (155)
21 cd07425 MPP_Shelphs Shewanella 94.9 0.069 1.5E-06 41.9 5.5 39 49-87 158-196 (208)
22 PF09637 Med18: Med18 protein; 73.8 5.1 0.00011 32.4 4.0 39 46-87 139-177 (250)
23 PF06874 FBPase_2: Firmicute f 52.0 45 0.00097 31.0 6.2 72 46-119 507-588 (640)
24 cd07399 MPP_YvnB Bacillus subt 51.2 1.1E+02 0.0024 23.6 7.7 69 45-116 135-213 (214)
25 cd07395 MPP_CSTP1 Homo sapiens 36.3 1.6E+02 0.0034 23.2 6.5 58 47-106 195-253 (262)
26 TIGR01854 lipid_A_lpxH UDP-2,3 35.9 1.3E+02 0.0027 23.5 5.9 58 45-106 172-229 (231)
27 COG2129 Predicted phosphoester 34.3 2.3E+02 0.0051 23.0 7.1 65 43-114 160-224 (226)
28 smart00854 PGA_cap Bacterial c 31.0 1.4E+02 0.003 23.5 5.3 40 50-91 197-236 (239)
29 PF00149 Metallophos: Calcineu 29.8 65 0.0014 21.4 2.9 27 43-69 173-199 (200)
30 PF02630 SCO1-SenC: SCO1/SenC; 27.7 1.9E+02 0.0042 21.7 5.4 52 26-77 96-154 (174)
31 PF10083 DUF2321: Uncharacteri 26.8 23 0.0005 27.2 0.2 47 43-95 20-75 (158)
32 KOG0376|consensus 26.5 9.2 0.0002 34.2 -2.3 74 19-92 210-299 (476)
33 cd07392 MPP_PAE1087 Pyrobaculu 26.4 1.1E+02 0.0023 22.2 3.7 31 44-74 147-177 (188)
34 COG2908 Uncharacterized protei 25.6 1.7E+02 0.0038 23.9 5.1 57 44-108 173-229 (237)
35 TIGR01329 cysta_beta_ly_E cyst 25.2 1.9E+02 0.004 24.5 5.5 64 42-105 145-209 (378)
36 COG3332 Uncharacterized conser 24.5 1.3E+02 0.0028 24.8 4.1 56 69-126 203-260 (270)
37 TIGR03729 acc_ester putative p 22.4 1.5E+02 0.0033 23.0 4.1 29 44-72 195-223 (239)
38 PF02571 CbiJ: Precorrin-6x re 22.0 79 0.0017 25.6 2.5 22 44-65 51-73 (249)
39 cd07379 MPP_239FB Homo sapiens 21.1 1.5E+02 0.0033 20.7 3.6 31 44-74 90-120 (135)
40 PF03494 Beta-APP: Beta-amyloi 20.5 61 0.0013 19.0 1.1 28 70-103 4-31 (39)
41 PRK05583 ribosomal protein L7A 20.4 1.1E+02 0.0025 21.4 2.7 64 43-107 18-90 (104)
No 1
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=2.4e-36 Score=252.02 Aligned_cols=116 Identities=51% Similarity=0.929 Sum_probs=107.8
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
|++|+||...| ++.+++|||||||.....+|. ++||.|++||++++++||++||+++||||||++++||+++++++|+
T Consensus 188 i~~i~rp~~~~-~~~~~~dllWSDP~~~~~~~~~s~RG~g~~FG~~~~~~Fl~~n~l~~IiR~Hq~v~~G~~~~~~~~~i 266 (320)
T PTZ00480 188 IRRIMRPTDVP-DTGLLCDLLWSDPDKDVQGWADNERGVSYVFSQEIVQVFLKKHELDLICRAHQVVEDGYEFFSKRQLV 266 (320)
T ss_pred HhcccCCCCCC-ccchhhheeecCcccccCCCccCCCCCccccCHHHHHHHHHhCCCcEEEEcCccccCceEEeCCCcEE
Confidence 67899997665 556679999999998788999 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcch
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKI 120 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~ 120 (143)
|||||||||+.++|.||+|.|+++++++|.+|+|.+.+
T Consensus 267 TvFSa~~Y~~~~~N~ga~l~i~~~~~~~~~~~~p~~~~ 304 (320)
T PTZ00480 267 TLFSAPNYCGEFDNAGSMMTIDESLMCSFQILKPAEQG 304 (320)
T ss_pred EEeCCcccCCCCCccEEEEEECCCCcEeEEEecCCccc
Confidence 99999999999999999999999999999999877653
No 2
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=5.9e-36 Score=246.23 Aligned_cols=113 Identities=35% Similarity=0.656 Sum_probs=104.8
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
|++|+||.+.|.+.. ++|||||||.+. .+|. ++||.|+.||++++++||++||+++||||||++++||+++++++|+
T Consensus 172 i~~i~r~~~~~~~~~-~~dllWsDP~~~-~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 249 (285)
T cd07415 172 IRAIDRFQEVPHEGP-MCDLLWSDPDDI-EGWGISPRGAGYLFGQDVVEEFNHNNGLTLICRAHQLVMEGYQWMFDDKLV 249 (285)
T ss_pred hhcccCCCCCCCCCC-ccceEecCCCcc-CCCCcCCCCCccccCHHHHHHHHHHCCCeEEEEcCccccceEEEecCCcEE
Confidence 678999977666554 599999999864 7899 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCc
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKK 118 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~ 118 (143)
|||||||||+.++|.||+|.|+++++++|++|+|.+
T Consensus 250 TvfSa~~y~~~~~n~~a~l~i~~~~~~~~~~~~~~~ 285 (285)
T cd07415 250 TVWSAPNYCYRCGNVASIMELDEHLKRSFKVFEAAP 285 (285)
T ss_pred EEecCCcccCCCCceEEEEEECCCCcEeEEEeccCC
Confidence 999999999999999999999999999999999864
No 3
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=6.1e-36 Score=247.14 Aligned_cols=113 Identities=45% Similarity=0.799 Sum_probs=104.9
Q ss_pred ccccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeE
Q psy5383 3 SMKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKL 81 (143)
Q Consensus 3 ~i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~l 81 (143)
.|+.|+||...| ++.+++|+|||||.....+|. ++||.|+.||++++++||++||+++||||||++++||+++++++|
T Consensus 180 ~i~~i~rp~~~~-~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~Hq~~~~G~~~~~~~~~ 258 (294)
T PTZ00244 180 SVNEIERPCDVP-DRGILCDLLWADPEDEVRGFLESDRGVSYLFGEDIVNDFLDMVDMDLIVRAHQVMERGYGFFASRQL 258 (294)
T ss_pred HhhhhccccCCC-ccchhheeeecCcccccCCCCcCCCCCccccCHHHHHHHHHHcCCcEEEEcCccccCceEEcCCCeE
Confidence 467899997655 556679999999998788999 999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEcc
Q psy5383 82 VTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 116 (143)
Q Consensus 82 iTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~ 116 (143)
+|||||||||+..+|.||+|.|+++++++|.+|++
T Consensus 259 iTvfSa~~Y~~~~~N~~a~l~i~~~~~~~f~~~~~ 293 (294)
T PTZ00244 259 VTVFSAPNYCGEFDNDAAVMNIDDKLQCSFLIIPA 293 (294)
T ss_pred EEEeCCccccCCCCceEEEEEECCCCcEeEEEeec
Confidence 99999999999999999999999999999998864
No 4
>KOG0372|consensus
Probab=100.00 E-value=1.6e-37 Score=250.11 Aligned_cols=118 Identities=34% Similarity=0.639 Sum_probs=112.5
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
||.|+|..++|.++++ +|||||||.+ ..||. ++||+|++||+++++.||+.||+..|+||||.+.+||++.|+++|+
T Consensus 173 Ir~lDR~~Eiph~g~m-~DllWSDPee-~~g~~~SPRGaGylFG~dvv~~F~~~N~~~~I~RaHQLv~eGyk~~F~~~v~ 250 (303)
T KOG0372|consen 173 IRVLDRKQEVPHDGAM-CDLLWSDPEE-GPGWGLSPRGAGYLFGEDVVESFLEANGLSLICRAHQLVMEGYKWHFDEKVV 250 (303)
T ss_pred HHHhhccccCCCCCcc-hheeccCccc-CCCcccCCCCccccccHHHHHHHHHhCChHHHHHHHHHHHhhHHHhcCCceE
Confidence 7889999999999998 8999999974 56999 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcchhhc
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKILEF 123 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~~~~ 123 (143)
|||||||||+.++|.||||.++++....|.+|++.+++.+.
T Consensus 251 TVWSAPNYCYrCGN~AsIl~lde~~~~~F~vFeaa~~~~~~ 291 (303)
T KOG0372|consen 251 TVWSAPNYCYRCGNVAAILELDEDLDKDFRVFEAAPQESRG 291 (303)
T ss_pred EEecCCchhhhcCChHHheeeccccCcceEeeecchhhhcC
Confidence 99999999999999999999999999999999999887663
No 5
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1.5e-35 Score=245.70 Aligned_cols=117 Identities=31% Similarity=0.614 Sum_probs=106.0
Q ss_pred ccccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeC-Ce
Q psy5383 3 SMKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFAD-KK 80 (143)
Q Consensus 3 ~i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~-~~ 80 (143)
.|++|+||.+.|.+..+ +|+|||||.. ..+|. ++||.|+.||++++++||++||+++||||||++++||+++++ ++
T Consensus 172 ~i~~i~r~~~~~~~~~~-~dllWsDP~~-~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~ 249 (303)
T PTZ00239 172 QIRTIDRKIEIPHEGPF-CDLMWSDPEE-VEYWAVNSRGAGYLFGAKVTKEFCRLNDLTLICRAHQLVMEGYKYWFPDQN 249 (303)
T ss_pred hhccccCCCCCCCCCCc-eeeEecCccc-cCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhccceEEEeCCCe
Confidence 36789999877766654 8999999984 57899 999999999999999999999999999999999999998765 45
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcchh
Q psy5383 81 LVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKIL 121 (143)
Q Consensus 81 liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~~ 121 (143)
|+|||||||||+.++|.||+|.++++++++|.+|+|.+.+.
T Consensus 250 ~iTvfSa~~Y~~~~~N~~ail~i~~~~~~~~~~~~~~~~~~ 290 (303)
T PTZ00239 250 LVTVWSAPNYCYRCGNIASILCLDENLQQTWKTFKEVPESA 290 (303)
T ss_pred EEEEECCCcccCCCCceEEEEEECCCCcEeeEEeeCCCccc
Confidence 99999999999999999999999999999999999987653
No 6
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.5e-35 Score=244.69 Aligned_cols=113 Identities=56% Similarity=0.983 Sum_probs=105.1
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
|++|+||...| ++.+++|+|||||.....+|. ++||.|+.||++++++||++||+++||||||++++||+++++++|+
T Consensus 179 i~~i~r~~~~~-~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~i 257 (293)
T cd07414 179 IRRIMRPTDVP-DQGLLCDLLWSDPDKDVQGWGENDRGVSFTFGKDVVAKFLNKHDLDLICRAHQVVEDGYEFFAKRQLV 257 (293)
T ss_pred HhcccCCCCCC-chhhHhhhhccCcccccCCCccCCCCcceecCHHHHHHHHHHcCCeEEEECCccccCeEEEeCCCcEE
Confidence 67889996655 455679999999998888999 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccC
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPK 117 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~ 117 (143)
|||||||||+.++|.||+|.|+++++++|.+|+|.
T Consensus 258 TvfSa~~Y~~~~~N~~a~l~i~~~~~~~~~~~~~~ 292 (293)
T cd07414 258 TLFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPA 292 (293)
T ss_pred EEecCCcccCCCCceEEEEEECCCCcEEEEEecCC
Confidence 99999999999899999999999999999999864
No 7
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=3.5e-35 Score=244.68 Aligned_cols=115 Identities=30% Similarity=0.543 Sum_probs=105.1
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
|++|+||.. ++++++++|||||||.+. .+|. ++||.|+.||++++++||++||+++||||||++++||+++++++|+
T Consensus 191 i~~i~r~~~-~~~~~~~~dllWsDP~~~-~~~~~s~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 268 (316)
T cd07417 191 IRKIDRFRQ-PPDSGLMCELLWSDPQPQ-PGRSPSKRGVGCQFGPDVTKRFLEENNLEYIIRSHEVKDEGYEVEHDGKCI 268 (316)
T ss_pred hhcccCCCC-CCccccceeeeecCCCCC-CCCCccCCCCceEeCHHHHHHHHHHcCCcEEEECCcccceeEEEecCCeEE
Confidence 678889954 445667799999999854 6888 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcC-CCceEEEEEccCcch
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDE-NLTCSFHIMKPKKKI 120 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~-~~~~~~~~~~~~~~~ 120 (143)
|||||||||+.++|.||+|.|++ +++++|++|+|.+.+
T Consensus 269 TvfSa~~Y~~~~~N~ga~~~i~~~~~~~~~~~~~~~~~~ 307 (316)
T cd07417 269 TVFSAPNYCDQMGNKGAFIRITGSDLKPKFTQFEAVPHP 307 (316)
T ss_pred EEeCCccccCCCCcceEEEEEeCCCceeeeEeccCCCCC
Confidence 99999999999999999999999 899999999887654
No 8
>KOG0374|consensus
Probab=100.00 E-value=5.4e-35 Score=244.84 Aligned_cols=114 Identities=51% Similarity=0.910 Sum_probs=107.8
Q ss_pred ccccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeE
Q psy5383 3 SMKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKL 81 (143)
Q Consensus 3 ~i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~l 81 (143)
.|++|.||.. +++..+++|||||||.....+|. |.||+++.||++++++||+++++++||||||++++||++++++++
T Consensus 189 ~i~~i~rp~~-~~~~gll~DLlWsdp~~~~~g~~~n~Rg~s~~fg~~~v~~f~~~~~ldlivRaHqvv~dGyeffa~r~l 267 (331)
T KOG0374|consen 189 QIRAIPRPTD-SPDKGLLCDLLWSDPDDDVPGWEENDRGVSFTFGPAVVEDFCKKLDLDLIVRAHQVVEDGYEFFAGRKL 267 (331)
T ss_pred HHhhccCCcC-CCccceeeeeeecCCCCCCCCcccCCCceeeEecHHHHHHHHHHhCcceEEEcCccccccceEecCceE
Confidence 3789999954 44555889999999998889999 999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccC
Q psy5383 82 VTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPK 117 (143)
Q Consensus 82 iTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~ 117 (143)
+||||||+|||.+.|.||+|.|++++.++|.+++|.
T Consensus 268 vTIFSAP~Ycg~~~n~gavm~Vd~~l~~sf~~l~p~ 303 (331)
T KOG0374|consen 268 VTIFSAPNYCGEFDNAGAVMRVDKNLKCSFVILRPE 303 (331)
T ss_pred EEEecCchhccccCCceEEEEECCCCeEEEEEeccc
Confidence 999999999999999999999999999999999995
No 9
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=1.3e-34 Score=236.53 Aligned_cols=113 Identities=47% Similarity=0.783 Sum_probs=105.1
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
|++|+||...+ ++.+++|||||||.....+|. |+||.|+.||++++++||++||+++||||||++++||+++++++|+
T Consensus 157 i~~i~r~~~~~-~~~~~~dllWsDP~~~~~~~~~~~Rg~g~~fg~~~~~~Fl~~n~l~~iiR~He~~~~G~~~~~~~~~~ 235 (271)
T smart00156 157 IRKLKRPQEPP-DEGLLIDLLWSDPDQPVDGFQPSIRGASYYFGPDAVDEFLKKNNLKLIIRAHQVVDDGYEFFHDRKLV 235 (271)
T ss_pred HhcccCCCCCC-chhhhhheeecCCCcccCCCccCCCCCccccCHHHHHHHHHHCCCeEEEecCcccCCcEEEecCCcEE
Confidence 67889996544 566679999999987788999 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccC
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPK 117 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~ 117 (143)
|||||||||+.++|.||++.|+++++++|.+|+|.
T Consensus 236 TvfSa~~y~~~~~n~~a~~~i~~~~~~~~~~~~~~ 270 (271)
T smart00156 236 TIFSAPNYCGRFGNKAAVLKVDKDLKLSFEQFKPG 270 (271)
T ss_pred EEECCcccccCCCceEEEEEECCCCcEEEEEecCC
Confidence 99999999998899999999999999999999875
No 10
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=1.1e-33 Score=234.51 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=102.1
Q ss_pred ccccccCCCCCCCCcceeeeeecCCCCCCCC------Ccc--ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceE
Q psy5383 3 SMKYLNGNGAQPNDNFFRDRVLFRCKSTQKV------HWR--THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYE 74 (143)
Q Consensus 3 ~i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~------~~~--~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~ 74 (143)
.|++|+||.+.|. ..+++|||||||..... +|. ++||.|+.||++++++||++||+++||||||++++||+
T Consensus 171 ~i~~i~r~~~~~~-~~~~~dllWsDP~~~~~~~~~~~~~~~~~~Rg~g~~fG~~~~~~Fl~~n~l~~iiR~He~~~~G~~ 249 (305)
T cd07416 171 DIRKLDRFREPPA-FGPMCDLLWSDPLEDFGNEKTQEHFVHNTVRGCSYFYSYRAVCEFLQKNNLLSIIRAHEAQDAGYR 249 (305)
T ss_pred HhcccCCCCCCCC-CCcceeeeecCcccccccccccccccccCCCCCceecCHHHHHHHHHHcCCeEEEEeccccccceE
Confidence 3778999966554 45569999999986433 476 48999999999999999999999999999999999999
Q ss_pred EeeCC------eEEEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcch
Q psy5383 75 FFADK------KLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKI 120 (143)
Q Consensus 75 ~~~~~------~liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~ 120 (143)
+++++ +|+|||||||||+.++|.||+|.|+++. ++|.+|.+.+..
T Consensus 250 ~~~~~~~~~~~~~iTvFSa~~Y~~~~~N~~a~l~i~~~~-~~~~~~~~~~~~ 300 (305)
T cd07416 250 MYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNV-MNIRQFNCSPHP 300 (305)
T ss_pred EecCCCcCCCCcEEEEeCCccccCCCCceEEEEEEcCCc-ceEEEecCCCCC
Confidence 98876 9999999999999999999999999985 699999988754
No 11
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=1.4e-33 Score=235.55 Aligned_cols=98 Identities=34% Similarity=0.470 Sum_probs=91.1
Q ss_pred ceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCCC
Q psy5383 18 FFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDN 96 (143)
Q Consensus 18 ~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~N 96 (143)
.+++|||||||.+....|. ++||.|+.||++++++||++|++++||||||++++||+++++++|+|||||||||+.++|
T Consensus 223 ~~~~dlLWSDP~~~~~~~~~~~RG~g~~FG~~~~~~Fl~~n~l~~IIR~He~v~~G~~~~~~~~~iTvFSa~nY~~~~~N 302 (321)
T cd07420 223 RQILDILWSDPKAQKGCKPNTFRGGGCYFGPDVTSKVLQKHGLSLLIRSHECKPEGYEFCHNNKVITIFSASNYYEEGSN 302 (321)
T ss_pred chhheeeecCCccCCCCCccCCCCCccccCHHHHHHHHHHCCCcEEEEcChhhhcceEEecCCeEEEEecCCccCCCCCc
Confidence 4678999999996554466 789999999999999999999999999999999999999999999999999999999899
Q ss_pred eEEEEEEcCCCceEEEEEc
Q psy5383 97 AGAMMIVDENLTCSFHIMK 115 (143)
Q Consensus 97 ~gAvl~i~~~~~~~~~~~~ 115 (143)
.||+|.|+++++++|.+|.
T Consensus 303 ~gavl~i~~~~~~~f~~~~ 321 (321)
T cd07420 303 RGAYIKLGPDLTPHFVQYQ 321 (321)
T ss_pred cEEEEEECCCCceeEEEeC
Confidence 9999999999999998873
No 12
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=2.8e-33 Score=232.57 Aligned_cols=114 Identities=33% Similarity=0.566 Sum_probs=104.1
Q ss_pred ccccccCCCCCCCCcceeeeeecCCCCCC--CCCcc-cc---CCce--eEeChHHHHHHHHhcCCceEEeccceecCceE
Q psy5383 3 SMKYLNGNGAQPNDNFFRDRVLFRCKSTQ--KVHWR-TH---RGVS--YTFGADMVHEFLKKFNIDLVCRAHQVVEEGYE 74 (143)
Q Consensus 3 ~i~~I~rp~~~~~~~~l~~DLLWsDP~~~--~~~~~-~~---RG~g--~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~ 74 (143)
.|+.|.||...+.++++++|+|||||... ..+|. +. ||.| +.||++++++||++||+++||||||++++||+
T Consensus 190 ~i~~i~r~~~~~~~~~~~~dllWsDP~~~~~~~~~~~~~~~~rg~g~~~~fg~~~~~~Fl~~n~l~~iiRgHe~~~~G~~ 269 (311)
T cd07419 190 EIEDLKRPLTMEFGEQVVMDLLWSDPTENDSVLGLRPNAIDPRGPGLIVKFGPDRVHRFLEENDLQMIIRAHECVMDGFE 269 (311)
T ss_pred HHhhcCCCCCCCCCCcceeeeeccCccccccccccccCCCCCCCCCcceeECHHHHHHHHHHCCCeEEEEechhhhCCeE
Confidence 36788999767777888999999999864 35666 55 9998 79999999999999999999999999999999
Q ss_pred EeeCCeEEEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEcc
Q psy5383 75 FFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKP 116 (143)
Q Consensus 75 ~~~~~~liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~ 116 (143)
++++++|+||||||+||+.++|.||++.|++++++++++++|
T Consensus 270 ~~~~~~~iTvfSa~~y~~~~~n~~ai~~i~~~~~~~~~~~~~ 311 (311)
T cd07419 270 RFAQGKLITLFSATNYCGTAGNAGAILVLGRDLTIIPKLIHP 311 (311)
T ss_pred EeCCCeEEEEecCCcccCCCCceEEEEEECCCCcEeEEEeCC
Confidence 999999999999999999999999999999999999999987
No 13
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=99.97 E-value=1.2e-31 Score=227.75 Aligned_cols=116 Identities=30% Similarity=0.496 Sum_probs=97.8
Q ss_pred cccccCCCCCCCCc---ceeeeeecCCCCCCCCCcc-c-cCCceeEeChHHHHHHHHhcCCceEEeccce----------
Q psy5383 4 MKYLNGNGAQPNDN---FFRDRVLFRCKSTQKVHWR-T-HRGVSYTFGADMVHEFLKKFNIDLVCRAHQV---------- 68 (143)
Q Consensus 4 i~~I~rp~~~~~~~---~l~~DLLWsDP~~~~~~~~-~-~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~---------- 68 (143)
|++|+||...|... .+++|||||||... .+|. + .||+|+.||++++++||++|++++||||||+
T Consensus 226 i~~i~r~~~~~~~~~~~~i~~dlLWSDP~~~-~g~~~~~~RG~g~~FG~~~~~~FL~~n~l~~IIRsHe~~~~~~~~~~~ 304 (377)
T cd07418 226 LMKARRSVLDPPGEGSNLIPGDVLWSDPSLT-PGLSPNKQRGIGLLWGPDCTEEFLEKNNLKLIIRSHEGPDAREKRPGL 304 (377)
T ss_pred HhhCCCCCCCCCCCCccccceeeEeeCCccC-CCCCccCCCCCccccCHHHHHHHHHHcCCcEEEECCCCcccccccccc
Confidence 45677876444433 36799999999864 6776 4 7999999999999999999999999999996
Q ss_pred --ecCceEEeeC---CeEEEEecCCCCC------CCCCCeEEEEEEcCC--CceEEEEEccCcch
Q psy5383 69 --VEEGYEFFAD---KKLVTLFSAPNYC------GEFDNAGAMMIVDEN--LTCSFHIMKPKKKI 120 (143)
Q Consensus 69 --~~~G~~~~~~---~~liTVFSa~nY~------~~~~N~gAvl~i~~~--~~~~~~~~~~~~~~ 120 (143)
+++||+++++ ++|+||||||||| +.++|.||++.++.+ ...+|++|++++..
T Consensus 305 ~~v~~Gy~~~~~~~~~~liTvFSa~nY~~~~~~~~~~~N~ga~~~~~~~~~~~~~~~~~~~~~~~ 369 (377)
T cd07418 305 AGMNKGYTVDHDVESGKLITLFSAPDYPQFQATEERYNNKGAYIILQPPDFSDPQFHTFEAVKPR 369 (377)
T ss_pred hhhhCceEEeccCCCCcEEEEecCCccccccccccccCcceEEEEEecCCCCCccceEeeccCCC
Confidence 7899999887 9999999999999 578999999999654 57899999877544
No 14
>KOG0373|consensus
Probab=99.97 E-value=1e-32 Score=220.23 Aligned_cols=116 Identities=32% Similarity=0.633 Sum_probs=111.3
Q ss_pred ccccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCe-
Q psy5383 3 SMKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKK- 80 (143)
Q Consensus 3 ~i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~- 80 (143)
.||-|.|.+++|.+.++ |||+||||. +++.|. ++||+|++||.++..+|+.-|+|.+|.||||.+.+||++.|+.+
T Consensus 175 qir~i~R~qEiPh~G~f-cDlmWSDPe-dve~W~vSpRGAGwlFGskVt~eF~~iN~L~LicRaHQLV~EG~KymF~eK~ 252 (306)
T KOG0373|consen 175 QIRLIERNQEIPHEGPF-CDLMWSDPE-DVETWAVSPRGAGWLFGSKVTTEFNHINNLNLICRAHQLVQEGFKYMFDEKG 252 (306)
T ss_pred HHHhHHhhccCCCCCCc-cceeccChh-hhhhheeCCCCcceeechhhhHHHHhccchHHHHhHHHHHHhhHHhccCCCC
Confidence 57889999999999999 999999997 589999 99999999999999999999999999999999999999999888
Q ss_pred EEEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcch
Q psy5383 81 LVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKI 120 (143)
Q Consensus 81 liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~ 120 (143)
++|||||||||..++|.|+||.++++++.++++|.+++..
T Consensus 253 lvTVWSAPNYCYRCGNvAsi~~~d~~~~r~~k~F~avpd~ 292 (306)
T KOG0373|consen 253 LVTVWSAPNYCYRCGNVASIMSFDDNLERETKIFSAVPDN 292 (306)
T ss_pred EEEEecCCchhhhccCeeeEEEecccCCccceeeeecCCc
Confidence 9999999999999999999999999999999999988865
No 15
>KOG0376|consensus
Probab=99.94 E-value=1.3e-27 Score=206.11 Aligned_cols=115 Identities=31% Similarity=0.563 Sum_probs=108.6
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
||+|.|+ ..|++..+.+|+|||||.. ..|.. +.||.|..||++++++||+.|++++||||||+.+.||++.++|+|+
T Consensus 345 ~r~i~r~-~~~~~~~~~~~~lws~pq~-~~g~s~S~r~~g~~fG~d~t~~f~~~n~l~~i~rshe~~d~gy~~eh~g~l~ 422 (476)
T KOG0376|consen 345 FRNIDRF-EQPPEEGLMCELLWSDPQP-ANGRSPSKRGVGLQFGPDVTERFLQDNNLDKIIRSHEVKDEGYEVEHSGKLI 422 (476)
T ss_pred HHhhhhc-cCCcccccccccccCCCcc-ccCCCccccCceeeeCCCchhhHHhhcchHHHhhccccCCCceeeecCCcEE
Confidence 7899999 8888888889999999985 57888 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEc-CCCceEEEEEccCcch
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVD-ENLTCSFHIMKPKKKI 120 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~-~~~~~~~~~~~~~~~~ 120 (143)
|||||||||...+|.||++.++ ++++..+++|++++..
T Consensus 423 tvfsapnycd~~~n~ga~i~~~~~~~~p~~~~~e~vp~~ 461 (476)
T KOG0376|consen 423 TVFSAPNYCDQMGNKGAFIHLEPDDLTPNFYTFEAVPHP 461 (476)
T ss_pred EEecCcchhhhcCCcceEEEecCCCCccceeecccCCCC
Confidence 9999999999999999999998 6789999999998865
No 16
>KOG0371|consensus
Probab=99.94 E-value=7e-28 Score=195.51 Aligned_cols=118 Identities=32% Similarity=0.592 Sum_probs=110.3
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLV 82 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~li 82 (143)
+|.++|-+++|.+.++ ||||||||+ +..+|. ++||+|+.||.+..+.|-.+||+++|-|+||.+++||.+.+...++
T Consensus 190 ~r~~dr~~evphegpm-cDlLwsdpd-dr~gwg~sprgag~tfg~di~~~fn~~n~lslisRahqlvm~g~nW~~~~~~v 267 (319)
T KOG0371|consen 190 IRLLDRIQEVPHEGPM-CDLLWSDPD-DRCGWGISPRGAGYTFGQDISEQFNHKNGLSLISRAHQLVMEGYNWYHLWNVV 267 (319)
T ss_pred HHHHHHhhcccCCCCh-hheeccCcc-cCCCCCCCCCCCCcccchhhHHHhhccCCchHhHHHHHHHhcccceeeeccee
Confidence 4677888899999998 799999998 568999 9999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcchhhc
Q psy5383 83 TLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKILEF 123 (143)
Q Consensus 83 TVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~~~~ 123 (143)
|||||||||..++|.||++.++++....|.+|+|++.+.+.
T Consensus 268 tiFSapnycYrcgn~a~i~e~d~~~~~~f~q~~psp~k~e~ 308 (319)
T KOG0371|consen 268 TIFSAPNYCYRCGNQAAIMERDDTKNYDFLQFDPSPRKVEP 308 (319)
T ss_pred EEccCCchhhccccHHHHhhhhhccCcceEEecCCcccccc
Confidence 99999999999999999999999999999999998766443
No 17
>KOG0375|consensus
Probab=99.93 E-value=1.2e-27 Score=201.58 Aligned_cols=115 Identities=25% Similarity=0.427 Sum_probs=101.0
Q ss_pred cccccCCCCCCCCcceeeeeecCCCCCCC------CCcc--ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEE
Q psy5383 4 MKYLNGNGAQPNDNFFRDRVLFRCKSTQK------VHWR--THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEF 75 (143)
Q Consensus 4 i~~I~rp~~~~~~~~l~~DLLWsDP~~~~------~~~~--~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~ 75 (143)
||+|+|..+.|.-+++ ||||||||.++. +.|. +.|||+|.|...|+++||+.|||-.||||||.++.||+.
T Consensus 217 Ir~l~RF~EpPa~Gpm-CDLLWsDPlEdfgnek~~e~f~hNsvRGCSyfysy~A~C~FLq~nnLLSIiRAHEAQDaGYRM 295 (517)
T KOG0375|consen 217 IRKLDRFKEPPAFGPM-CDLLWSDPLEDFGNEKTSEHFTHNSVRGCSYFYSYPAVCEFLQNNNLLSIIRAHEAQDAGYRM 295 (517)
T ss_pred HHhhhhccCCCccCcc-hhhhccChhhhccccccccccccCccccccceechHHHHHHHHhCCchhhhhhhhhhhhhhhh
Confidence 7899999766666655 999999998752 4576 799999999999999999999999999999999999997
Q ss_pred eeCC------eEEEEecCCCCCCCCCCeEEEEEEcCCCceEEEEEccCcch
Q psy5383 76 FADK------KLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIMKPKKKI 120 (143)
Q Consensus 76 ~~~~------~liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~~~~~~ 120 (143)
+.+. .+|||||||||.+.|+|+||||+..++++ .++||.+++..
T Consensus 296 YrksqttGFPSLiTiFSAPNYLDvYnNKAAvLKYEnNVM-NIRQFncSPHP 345 (517)
T KOG0375|consen 296 YRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVM-NIRQFNCSPHP 345 (517)
T ss_pred hhcccccCCchheeeecCCchhhhhccHHHHhhhhcccc-eeeccCCCCCC
Confidence 7653 69999999999999999999999988865 99999877643
No 18
>KOG0377|consensus
Probab=99.92 E-value=2.1e-26 Score=197.68 Aligned_cols=121 Identities=27% Similarity=0.349 Sum_probs=103.3
Q ss_pred cceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCC
Q psy5383 17 NFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFD 95 (143)
Q Consensus 17 ~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~ 95 (143)
+.-+.|+|||||.....+|. .-||.|.+||+|++..||++.+++++||+|||.++||+|+++++|+|||||+||.....
T Consensus 331 W~Qi~DImWSDP~~~~GC~pNt~RGgG~yFGpDvT~~~Lqk~~l~~liRSHECKpeGyEf~Hd~kvlTiFSASNYYe~GS 410 (631)
T KOG0377|consen 331 WQQIFDIMWSDPQATMGCVPNTLRGGGCYFGPDVTDNFLQKHRLSYLIRSHECKPEGYEFCHDNKVLTIFSASNYYEIGS 410 (631)
T ss_pred HHHHHHHHhcCcccccCCCcccccCCcceeCchHHHHHHHHhCceeeeeecccCCCcceeeeCCeEEEEEeccchheecC
Confidence 34457999999998877888 78999999999999999999999999999999999999999999999999999998889
Q ss_pred CeEEEEEEcCCCceEEEEEccCcchhhcccccccCCCCCcch
Q psy5383 96 NAGAMMIVDENLTCSFHIMKPKKKILEFLSSVMSGEGSSSSI 137 (143)
Q Consensus 96 N~gAvl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (143)
|.||.+++.+.+...|.|+.+.+...+..=.+-.|..+.|++
T Consensus 411 NrGAYikl~~~~~PhfvQY~a~k~t~~~tlrqR~~~vEeSAl 452 (631)
T KOG0377|consen 411 NRGAYIKLGNQLTPHFVQYQAAKQTKRLTLRQRMGIVEESAL 452 (631)
T ss_pred CCceEEEeCCCCCchHHHHHhhhhhhhhhHHHHhhHHHHHHH
Confidence 999999999999999999987665444433344444444444
No 19
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.09 E-value=5.4e-10 Score=86.90 Aligned_cols=82 Identities=37% Similarity=0.525 Sum_probs=68.7
Q ss_pred cceeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCC
Q psy5383 17 NFFRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFD 95 (143)
Q Consensus 17 ~~l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~ 95 (143)
.+...+++|++|........ +.|+. |+++++.|++.++.+.|||||+++..|+.+...++++||+|++.|++..+
T Consensus 142 ~~~~~~~lw~r~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ii~GHt~~~~~~~~~~~~~~i~IDtg~~~~~~~~ 217 (225)
T cd00144 142 DQLPEDLLWSDPLELPGGFGSSRRGG----GPDAVEWFLKKNGLKLIVRGHTPVEEGYEFGHDGNLITIDSGCNYCGGGG 217 (225)
T ss_pred cccceeeeecCCCCCCCCCcCCCCCC----CHHHHHHHHHHCCCeEEEEcCccccCccEEcCCCCEEEEecCCcccCCCC
Confidence 45679999999986544444 55555 99999999999999999999999999987677889999999999987767
Q ss_pred CeEEEEE
Q psy5383 96 NAGAMMI 102 (143)
Q Consensus 96 N~gAvl~ 102 (143)
|..+++.
T Consensus 218 ~~l~~~~ 224 (225)
T cd00144 218 NKLAALV 224 (225)
T ss_pred ccEEEEe
Confidence 7777654
No 20
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=97.84 E-value=4e-05 Score=53.98 Aligned_cols=76 Identities=28% Similarity=0.384 Sum_probs=63.2
Q ss_pred CCCcceeeeeecCCCCCC-CCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCC
Q psy5383 14 PNDNFFRDRVLFRCKSTQ-KVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYC 91 (143)
Q Consensus 14 ~~~~~l~~DLLWsDP~~~-~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~ 91 (143)
+....+ .+.+|+||..+ ...|. ..||.+..| .+....|+..+....+.|+|+....++...+.+..+|.|++++|+
T Consensus 77 ~~~g~~-~~~~~~~~~~~~~~~w~~~~~g~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~d~~~~~~~~~lt~~~~~~~~ 154 (155)
T COG0639 77 PHAGHT-HDLLWSDPDGGDRRIWNPGPRGVPRDG-GDVTAVFGIVHTPKLIERAHVLYDIDTGAVFGGGLLTAFSAPNYC 154 (155)
T ss_pred CCcccc-ccccCCCCCCCcccccccCCCCCCccc-cchhhHHhhhcccceEEEEeEEEecCceEEeCCCeeeEEeccccc
Confidence 333444 56699999864 56777 889998888 888999998888888999999999999988886799999999986
No 21
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=94.86 E-value=0.069 Score=41.94 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecC
Q psy5383 49 MVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSA 87 (143)
Q Consensus 49 ~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa 87 (143)
.++++|+.++.+.||+||..++.|.-..+++++++|-+.
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~~~~~~~g~~i~ID~g 196 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGGIVTFCGGKVIRIDVG 196 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecCceEEECCEEEEEeCC
Confidence 588899999999999999999998876889999999874
No 22
>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.
Probab=73.80 E-value=5.1 Score=32.40 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=33.4
Q ss_pred ChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecC
Q psy5383 46 GADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSA 87 (143)
Q Consensus 46 G~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa 87 (143)
...-+..||+.+|+.. -+|.+.+||.|++++-+|+||--
T Consensus 139 ~~~~~~~fl~~lGy~~---~~Eyv~~G~~F~~g~i~I~l~ri 177 (250)
T PF09637_consen 139 TSGSLLSFLNELGYRF---DYEYVVEGYRFFKGDIVIELFRI 177 (250)
T ss_dssp SSSSHHHHHHHTTEEE---EEEEEEEEEEEEECCEEEEEEEE
T ss_pred CCCCHHHHHHHcCCce---EEEEEEEEEEEEECCEEEEEEEE
Confidence 6788999999999765 58999999999999888887743
No 23
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=52.04 E-value=45 Score=31.04 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=49.4
Q ss_pred ChHHHHHHHHhcCCc----eEEeccceec--CceEE-eeCCeEEEE---ecCCCCCCCCCCeEEEEEEcCCCceEEEEEc
Q psy5383 46 GADMVHEFLKKFNID----LVCRAHQVVE--EGYEF-FADKKLVTL---FSAPNYCGEFDNAGAMMIVDENLTCSFHIMK 115 (143)
Q Consensus 46 G~~~v~~fl~~~~l~----~IIR~Hq~~~--~G~~~-~~~~~liTV---FSa~nY~~~~~N~gAvl~i~~~~~~~~~~~~ 115 (143)
.++..+..|+++||+ .||-||-+|. +|=.. -++|+++.| ||.. |....+=.|=-|..+. -.+.+..=+
T Consensus 507 ~e~~c~~IL~EFgl~~~~~hIINGHvPVk~k~GEsPIKa~Gkl~VIDGGfskA-Yqk~TGIAGYTLiyNS-~gl~L~~H~ 584 (640)
T PF06874_consen 507 DEEICDKILEEFGLDPERGHIINGHVPVKVKKGESPIKANGKLIVIDGGFSKA-YQKTTGIAGYTLIYNS-YGLQLVAHQ 584 (640)
T ss_pred CHHHHHHHHHHhCCCCCCCeEECCccccccCCCCCCccCCCEEEEEcChhhhh-hccccCccceEEEecC-CcceeccCC
Confidence 567788889999999 9999999987 77653 478999999 8875 5555333444444443 344555545
Q ss_pred cCcc
Q psy5383 116 PKKK 119 (143)
Q Consensus 116 ~~~~ 119 (143)
|-..
T Consensus 585 pF~s 588 (640)
T PF06874_consen 585 PFES 588 (640)
T ss_pred CCCC
Confidence 5443
No 24
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=51.25 E-value=1.1e+02 Score=23.59 Aligned_cols=69 Identities=19% Similarity=0.260 Sum_probs=41.6
Q ss_pred eChHHHHHHHHhc-CCceEEeccceecCceEEe----e-CCeEEEEecCCCCCCC--CCC-eEEEEEEcCC-CceEEEEE
Q psy5383 45 FGADMVHEFLKKF-NIDLVCRAHQVVEEGYEFF----A-DKKLVTLFSAPNYCGE--FDN-AGAMMIVDEN-LTCSFHIM 114 (143)
Q Consensus 45 FG~~~v~~fl~~~-~l~~IIR~Hq~~~~G~~~~----~-~~~liTVFSa~nY~~~--~~N-~gAvl~i~~~-~~~~~~~~ 114 (143)
-|.+.+.+.+++. ++.+++-||.... +.... . ++.+..+.+ +|... .+| .=.++.++++ ..+.+..|
T Consensus 135 ~~~~~~~~ll~~~~~V~~v~~GH~H~~-~~~~~~~~~~~g~~v~~~~~--~~q~~~~~g~~~~r~~~f~~~~~~i~~~ty 211 (214)
T cd07399 135 DGQQIWDKLVKKNDNVFMVLSGHVHGA-GRTTLVSVGDAGRTVHQMLA--DYQGEPNGGNGFLRLLEFDPDNNKIDVRTY 211 (214)
T ss_pred cHHHHHHHHHhCCCCEEEEEccccCCC-ceEEEcccCCCCCEeeEEee--cccCCCCCCcceEEEEEEecCCCEEEEEeC
Confidence 4566788889988 8999999997653 33322 1 223433432 44222 122 1247777776 47888888
Q ss_pred cc
Q psy5383 115 KP 116 (143)
Q Consensus 115 ~~ 116 (143)
.|
T Consensus 212 sp 213 (214)
T cd07399 212 SP 213 (214)
T ss_pred CC
Confidence 76
No 25
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=36.29 E-value=1.6e+02 Score=23.16 Aligned_cols=58 Identities=19% Similarity=0.154 Sum_probs=35.0
Q ss_pred hHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCCCeE-EEEEEcCC
Q psy5383 47 ADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG-AMMIVDEN 106 (143)
Q Consensus 47 ~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~N~g-Avl~i~~~ 106 (143)
...+.+.+++.++++++-||........+ ++--..+-.++.+.....+.| .++.|+++
T Consensus 195 ~~~l~~ll~~~~V~~v~~GH~H~~~~~~~--~g~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 253 (262)
T cd07395 195 RKPLLDKFKKAGVKAVFSGHYHRNAGGRY--GGLEMVVTSAIGAQLGNDKSGLRIVKVTED 253 (262)
T ss_pred HHHHHHHHHhcCceEEEECccccCCceEE--CCEEEEEcCceecccCCCCCCcEEEEECCC
Confidence 35677788999999999999998766443 332112223333332223334 47777655
No 26
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=35.95 E-value=1.3e+02 Score=23.50 Aligned_cols=58 Identities=16% Similarity=0.264 Sum_probs=40.0
Q ss_pred eChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCCCeEEEEEEcCC
Q psy5383 45 FGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDEN 106 (143)
Q Consensus 45 FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~N~gAvl~i~~~ 106 (143)
..++++++.+++.+++++|-||-..+.=+.+..++.-.+-++..++. ..+.++.++++
T Consensus 172 ~~~~~~~~~~~~~~~~~~i~GHtH~~~~~~~~~~~~~~~~~~lgdW~----~~~~~~~~~~~ 229 (231)
T TIGR01854 172 VNPAEVAAVMRRYGVDRLIHGHTHRPAIHPLQADGQPATRIVLGDWY----RQGSILRVDAD 229 (231)
T ss_pred CCHHHHHHHHHHcCCCEEEECCccCcceeecccCCCccEEEEECCCc----cCCeEEEEcCC
Confidence 46788899999999999999999876655544344333555555553 33666777665
No 27
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=34.30 E-value=2.3e+02 Score=23.00 Aligned_cols=65 Identities=15% Similarity=0.290 Sum_probs=49.7
Q ss_pred eEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCCCeEEEEEEcCCCceEEEEE
Q psy5383 43 YTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHIM 114 (143)
Q Consensus 43 ~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~~~ 114 (143)
..-|..++.++.++.+=.+.|-||=.-..|.+.-.+ ||+-.|.-.+ .-..|++.++++ .+...+|
T Consensus 160 ~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~iG~----TivVNPG~~~--~g~yA~i~l~~~-~Vk~~~~ 224 (226)
T COG2129 160 VHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDKIGN----TIVVNPGPLG--EGRYALIELEKE-VVKLEQF 224 (226)
T ss_pred cccchHHHHHHHHHhCCceEEEeeecccccccccCC----eEEECCCCcc--CceEEEEEecCc-EEEEEEe
Confidence 467999999999999999999999887888875433 7777775533 456889999887 5555554
No 28
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=31.03 E-value=1.4e+02 Score=23.45 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=29.2
Q ss_pred HHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCC
Q psy5383 50 VHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYC 91 (143)
Q Consensus 50 v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~ 91 (143)
+...|-..|+++||=+|..+..+++.. ++++| +||-=|+.
T Consensus 197 ~A~~l~~~G~DvIiG~H~H~~~~~e~~-~~~~I-~YslGNfi 236 (239)
T smart00854 197 LAHALIDAGADVVIGHHPHVLQPIEIY-KGKLI-AYSLGNFI 236 (239)
T ss_pred HHHHHHHcCCCEEEcCCCCcCCceEEE-CCEEE-EEcccccc
Confidence 444444479999999999999999876 45554 78876553
No 29
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=29.84 E-value=65 Score=21.45 Aligned_cols=27 Identities=37% Similarity=0.576 Sum_probs=24.3
Q ss_pred eEeChHHHHHHHHhcCCceEEecccee
Q psy5383 43 YTFGADMVHEFLKKFNIDLVCRAHQVV 69 (143)
Q Consensus 43 ~~FG~~~v~~fl~~~~l~~IIR~Hq~~ 69 (143)
...+.+.+..++++.++.+++-||...
T Consensus 173 ~~~~~~~~~~~~~~~~v~~~~~GH~H~ 199 (200)
T PF00149_consen 173 ESKGREALEELLKKYNVDLVLSGHTHR 199 (200)
T ss_dssp EEEHHHHHHHHHHHTTCSEEEEESSSS
T ss_pred hhccHHHHHHHHhhCCCCEEEeCceec
Confidence 578889999999999999999999753
No 30
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=27.71 E-value=1.9e+02 Score=21.65 Aligned_cols=52 Identities=12% Similarity=0.072 Sum_probs=32.1
Q ss_pred CCCCCCCC----Ccc---ccCCceeEeChHHHHHHHHhcCCceEEeccceecCceEEee
Q psy5383 26 RCKSTQKV----HWR---THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFA 77 (143)
Q Consensus 26 sDP~~~~~----~~~---~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~ 77 (143)
=||..+.. .|. .++-.++.+..+.+++..+..++......-+--..+|.+.|
T Consensus 96 vDP~~DTp~~L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~H 154 (174)
T PF02630_consen 96 VDPERDTPEVLKKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDH 154 (174)
T ss_dssp SSTTTC-HHHHHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEE
T ss_pred eCCCCCCHHHHHHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEec
Confidence 48876532 233 45556788888999999999987765443322334455544
No 31
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.77 E-value=23 Score=27.23 Aligned_cols=47 Identities=21% Similarity=0.375 Sum_probs=31.2
Q ss_pred eEeChHHHHHHHHhcC---------CceEEeccceecCceEEeeCCeEEEEecCCCCCCCCC
Q psy5383 43 YTFGADMVHEFLKKFN---------IDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFD 95 (143)
Q Consensus 43 ~~FG~~~v~~fl~~~~---------l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~ 95 (143)
+.-+++..+.||.+.| +..=|||+-.++..+.+.+ =|.+|.||.+++
T Consensus 20 ~~~~p~~~~~fC~kCG~~tI~~Cp~C~~~IrG~y~v~gv~~~g~------~~~~PsYC~~CG 75 (158)
T PF10083_consen 20 YDKNPELREKFCSKCGAKTITSCPNCSTPIRGDYHVEGVFGLGG------HYEAPSYCHNCG 75 (158)
T ss_pred cccCchHHHHHHHHhhHHHHHHCcCCCCCCCCceecCCeeeeCC------CCCCChhHHhCC
Confidence 4456677788888876 4555899888755554422 256899996543
No 32
>KOG0376|consensus
Probab=26.54 E-value=9.2 Score=34.21 Aligned_cols=74 Identities=4% Similarity=-0.127 Sum_probs=55.5
Q ss_pred eeeeeecCCCCCCCCCcc-ccCCceeEeChHHHHHHHHhcCCceEEeccceec------------CceEEee---CCeEE
Q psy5383 19 FRDRVLFRCKSTQKVHWR-THRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVE------------EGYEFFA---DKKLV 82 (143)
Q Consensus 19 l~~DLLWsDP~~~~~~~~-~~RG~g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~------------~G~~~~~---~~~li 82 (143)
+-.|..|++|......|- ..++.+...++.....||.+.++.-++|.|.-+. .+|-.-+ .+.+.
T Consensus 210 ~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~ylfngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~ 289 (476)
T KOG0376|consen 210 VPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMN 289 (476)
T ss_pred cCCCceEEecCCccccccchhhhHhhcCCCCCcccccccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHH
Confidence 557899999986544555 7888889999999999999999999999886532 2222111 23589
Q ss_pred EEecCCCCCC
Q psy5383 83 TLFSAPNYCG 92 (143)
Q Consensus 83 TVFSa~nY~~ 92 (143)
++|+++.++.
T Consensus 290 ~iy~f~~e~~ 299 (476)
T KOG0376|consen 290 KIYGFEGEVK 299 (476)
T ss_pred HHhCCCcchh
Confidence 9999998873
No 33
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=26.40 E-value=1.1e+02 Score=22.21 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=26.5
Q ss_pred EeChHHHHHHHHhcCCceEEeccceecCceE
Q psy5383 44 TFGADMVHEFLKKFNIDLVCRAHQVVEEGYE 74 (143)
Q Consensus 44 ~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~ 74 (143)
..|.+++.+++++.+.++++=||--...+..
T Consensus 147 ~~g~~~l~~li~~~~~~~~l~GH~H~~~~~~ 177 (188)
T cd07392 147 HVGSKAIRKFIEERQPLLCICGHIHESRGVD 177 (188)
T ss_pred ccCCHHHHHHHHHhCCcEEEEecccccccee
Confidence 4689999999999999999999888766553
No 34
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.59 E-value=1.7e+02 Score=23.87 Aligned_cols=57 Identities=14% Similarity=0.153 Sum_probs=41.9
Q ss_pred EeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCCCeEEEEEEcCCCc
Q psy5383 44 TFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLT 108 (143)
Q Consensus 44 ~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~N~gAvl~i~~~~~ 108 (143)
...+.++.+-+++++++.+|-||-..+.......-.+|. +|.....+++++++.+..
T Consensus 173 d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~~i~~~~yi~--------lGdW~~~~s~~~v~~~~~ 229 (237)
T COG2908 173 DVNPAAVADEARRHGVDGVIHGHTHRPAIHNIPGITYIN--------LGDWVSEGSILEVDDGGL 229 (237)
T ss_pred HhhHHHHHHHHHHcCCCEEEecCcccHhhccCCCceEEe--------cCcchhcceEEEEecCcE
Confidence 456788888999999999999999887776654322221 244456799999988754
No 35
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=25.23 E-value=1.9e+02 Score=24.45 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=41.3
Q ss_pred eeEeChHHHHHHHHhcCCceEEeccceecCceEEeeCCeEEEEecCCCCCCCCCC-eEEEEEEcC
Q psy5383 42 SYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDN-AGAMMIVDE 105 (143)
Q Consensus 42 g~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~~~~~liTVFSa~nY~~~~~N-~gAvl~i~~ 105 (143)
|..+.-+++.+++++.|+.+|+=+=+...-......-+-=+.+||++.|.+.... .|+++.+++
T Consensus 145 g~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l~~g~Di~v~S~tK~l~G~~~~~~G~v~~~~ 209 (378)
T TIGR01329 145 QKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPLELGADIVYHSATKFLAGHSDVMAGVLAVKG 209 (378)
T ss_pred CeeecHHHHHHHHHHcCCEEEEECCCcccccCChhhcCCcEEEEecceeccCCccceeEEEEeCc
Confidence 4556778999999999999998864432222221111234899999998754222 377777754
No 36
>COG3332 Uncharacterized conserved protein [Function unknown]
Probab=24.55 E-value=1.3e+02 Score=24.84 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=39.4
Q ss_pred ecCceEEeeCCeEEEEecCCCCCCCCCCeEEEEEEcCCCceEEE--EEccCcchhhcccc
Q psy5383 69 VEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFH--IMKPKKKILEFLSS 126 (143)
Q Consensus 69 ~~~G~~~~~~~~liTVFSa~nY~~~~~N~gAvl~i~~~~~~~~~--~~~~~~~~~~~~~~ 126 (143)
...|........+-|||-...|.|. -...||+|..+....|+ .|.|+-...+.++.
T Consensus 203 Pdtgv~~ewerlls~ifI~g~~YGT--RastVl~v~~dgt~~fiEr~~~~sg~~~e~l~v 260 (270)
T COG3332 203 PDTGVGVEWERLLSTIFIPGPYYGT--RASTVLRVSKDGTVTFIERVFGPSGEDVEKLGV 260 (270)
T ss_pred CcccccccHhhhheeeeecCCCccc--ceeEEEEEecCCeeEEEEeecCcccchHhhcCc
Confidence 3445555556678999999888763 45678999999887774 57777766554443
No 37
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=22.37 E-value=1.5e+02 Score=23.04 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.2
Q ss_pred EeChHHHHHHHHhcCCceEEeccceecCc
Q psy5383 44 TFGADMVHEFLKKFNIDLVCRAHQVVEEG 72 (143)
Q Consensus 44 ~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G 72 (143)
.+|...+.+++++.++.++|=||=....+
T Consensus 195 ~~~s~~l~~li~~~~v~~~i~GH~H~~~~ 223 (239)
T TIGR03729 195 FLGSQHFGQLLVKYEIKDVIFGHLHRRFG 223 (239)
T ss_pred ccChHHHHHHHHHhCCCEEEECCccCCCC
Confidence 56889999999999999999999877654
No 38
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=22.03 E-value=79 Score=25.61 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.9
Q ss_pred Ee-ChHHHHHHHHhcCCceEEec
Q psy5383 44 TF-GADMVHEFLKKFNIDLVCRA 65 (143)
Q Consensus 44 ~F-G~~~v~~fl~~~~l~~IIR~ 65 (143)
-| |.+.+.+||+++++++||=+
T Consensus 51 ~lg~~~~l~~~l~~~~i~~vIDA 73 (249)
T PF02571_consen 51 RLGDEEGLAEFLRENGIDAVIDA 73 (249)
T ss_pred CCCCHHHHHHHHHhCCCcEEEEC
Confidence 46 89999999999999999973
No 39
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=21.13 E-value=1.5e+02 Score=20.73 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=28.3
Q ss_pred EeChHHHHHHHHhcCCceEEeccceecCceE
Q psy5383 44 TFGADMVHEFLKKFNIDLVCRAHQVVEEGYE 74 (143)
Q Consensus 44 ~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~ 74 (143)
..|.+.+.+++++.+.+++|=||-..+.|++
T Consensus 90 ~~g~~~~~~~~~~~~~~~~i~GH~H~~~~~~ 120 (135)
T cd07379 90 RVGCEELLNRVQRVRPKLHVFGHIHEGYGAE 120 (135)
T ss_pred ccCCHHHHHHHHHHCCcEEEEcCcCCcCcee
Confidence 5788899999999999999999999998886
No 40
>PF03494 Beta-APP: Beta-amyloid peptide (beta-APP); InterPro: IPR013803 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. This entry represents the amyloid-beta peptide (A-beta), which originates as a breakdown product from the cleavage of amyloid-beta precursor protein (APP, or A4), an integral, glycosylated membrane brain protein. More information about these protein can be found at Protein of the Month: Amyloid-beta Precursor Protein [].; GO: 0005488 binding, 0016021 integral to membrane; PDB: 2LMQ_F 3JTI_B 2LMO_B 3MOQ_D 2LNQ_E 2LMP_G 2BEG_B 1AMC_A 3OW9_B 3U0T_F ....
Probab=20.45 E-value=61 Score=19.01 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=17.9
Q ss_pred cCceEEeeCCeEEEEecCCCCCCCCCCeEEEEEE
Q psy5383 70 EEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMIV 103 (143)
Q Consensus 70 ~~G~~~~~~~~liTVFSa~nY~~~~~N~gAvl~i 103 (143)
..||+..+...+ |-|-+ ..+|+|||+=+
T Consensus 4 ~a~yeV~~~klv---f~aED---vgSNKGAIIGL 31 (39)
T PF03494_consen 4 NAGYEVYHKKLV---FLAED---VGSNKGAIIGL 31 (39)
T ss_dssp CCCCCCCCCCCC---CCCCC---CSSSSSEEEEE
T ss_pred ccCcEEEeeEEE---EEhhH---cCCCCceEEEE
Confidence 457877665543 55554 33899998754
No 41
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=20.35 E-value=1.1e+02 Score=21.39 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=47.7
Q ss_pred eEeChHHHHHHHHhcCCceEEeccceecCceEEe------eCCeEEEEecC---CCCCCCCCCeEEEEEEcCCC
Q psy5383 43 YTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFF------ADKKLVTLFSA---PNYCGEFDNAGAMMIVDENL 107 (143)
Q Consensus 43 ~~FG~~~v~~fl~~~~l~~IIR~Hq~~~~G~~~~------~~~~liTVFSa---~nY~~~~~N~gAvl~i~~~~ 107 (143)
..+|.+.+.+.+++....++|-+-++-+++-+-+ ++-.+++.|+. ..-+|. .+.+++...|+.+
T Consensus 18 lv~G~~~v~~aik~gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk-~~~~~iai~d~g~ 90 (104)
T PRK05583 18 LLEGYNKCEEAIKKKKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGR-DEIKILGVKDKNM 90 (104)
T ss_pred eeecHHHHHHHHHcCCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCC-CCeEEEEEeChHH
Confidence 6899999999999999999999999988886532 24457777765 234455 4567776666653
Done!