RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5383
(143 letters)
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 166 bits (423), Expect = 4e-52
Identities = 36/78 (46%), Positives = 46/78 (58%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
RG YTFG D+ F + LV RAHQ+V EGY + D+ +VT+FSAPNYC N
Sbjct: 214 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQA 273
Query: 99 AMMIVDENLTCSFHIMKP 116
A+M +D+ L SF P
Sbjct: 274 AIMELDDTLKYSFLQFDP 291
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 162 bits (412), Expect = 9e-51
Identities = 59/78 (75%), Positives = 70/78 (89%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
RGVS+TFGA++V +FL K ++DL+CRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAG
Sbjct: 220 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 279
Query: 99 AMMIVDENLTCSFHIMKP 116
AMM VDE L CSF I+KP
Sbjct: 280 AMMSVDETLMCSFQILKP 297
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 162 bits (412), Expect = 2e-50
Identities = 59/78 (75%), Positives = 70/78 (89%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
RGVS+TFGA++V +FL K ++DL+CRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAG
Sbjct: 221 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 280
Query: 99 AMMIVDENLTCSFHIMKP 116
AMM VDE L CSF I+KP
Sbjct: 281 AMMSVDETLMCSFQILKP 298
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 140 bits (356), Expect = 3e-42
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
RGVS FG D+ FL++ N+D + R+H+V EGYE + VT+FSAPNYC + N
Sbjct: 225 RGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKA 284
Query: 99 AMMIVD-ENLTCSFHIMKP 116
+ + + +L FH
Sbjct: 285 SYIHLQGSDLRPQFHQFTA 303
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 140 bits (354), Expect = 1e-41
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
RG+ + FG D+ FL+ + + R+H++ G +F KL+T+FSAPNYC N G
Sbjct: 229 RGLGHAFGPDITDRFLRNNKLRKIFRSHELRMGGVQFEQKGKLMTVFSAPNYCDSQGNLG 288
Query: 99 AMMIVDENLTCSFHIMKP--KKKILEF 123
++ V I F
Sbjct: 289 GVIHVVPGHGILQAGRNDDQNLIIETF 315
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 138 bits (350), Expect = 5e-40
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
RGVS FG D+ FL++ N+D + R+H+V EGYE + VT+FSAPNYC + N
Sbjct: 378 RGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHGGRCVTVFSAPNYCDQMGNKA 437
Query: 99 AMMIVD-ENLTCSFHIMKP 116
+ + + +L FH
Sbjct: 438 SYIHLQGSDLRPQFHQFTA 456
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 138 bits (349), Expect = 1e-39
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKK------LVTLFSAPNYCG 92
RG SY + V EFL+ N+ + RAH+ + GY + + L+T+FSAPNY
Sbjct: 254 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 313
Query: 93 EFDNAGAMMIVDENLTCSFHI 113
++N A++ + N+
Sbjct: 314 VYNNKAAVLKYENNVMNIRQF 334
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 134 bits (340), Expect = 2e-39
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 39 RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKK------LVTLFSAPNYCG 92
RG SY + V EFL+ N+ + RAH+ + GY + + L+T+FSAPNY
Sbjct: 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 300
Query: 93 EFDNAGAMMIVDENLTC 109
++N A++ + N+
Sbjct: 301 VYNNKAAVLKYENNVMN 317
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.017
Identities = 13/101 (12%), Positives = 35/101 (34%), Gaps = 25/101 (24%)
Query: 43 YTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAGAMMI 102
Y + D++ F F + C+ V + + +++ + + + +G + +
Sbjct: 16 YQYK-DILSVFEDAFVDNFDCK--DVQDMPKSILSKEEIDHIIMSKD-----AVSGTLRL 67
Query: 103 VDENLTCSFHIMKPKKKILEFLSSVMSGEGSSSSIKKNKNY 143
S K ++ + +F+ V+ NY
Sbjct: 68 FW--TLLS----KQEEMVQKFVEEVL-----------RINY 91
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 31.2 bits (70), Expect = 0.11
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 52 EFLKKFNIDLVC----RAHQVVEEGYEFFADKKLV-----TLFSAPNYCGEFDNAG-AMM 101
E L++FN+ R + + Y F ++LV + A ++
Sbjct: 218 EMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLL 277
Query: 102 IVDE 105
+VDE
Sbjct: 278 VVDE 281
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
c.1.8.3
Length = 291
Score = 29.1 bits (65), Expect = 0.51
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 77 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHI 113
D + + P++ D A I +N+ + H
Sbjct: 157 IDPDNLIIVGTPSWSQNVDEASRDPINAKNIAYTLHF 193
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 26.3 bits (59), Expect = 0.74
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 25 FRCKSTQKVHWRTHRG 40
FR KS +H RTH G
Sbjct: 22 FRSKSYLIIHTRTHTG 37
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 26.0 bits (58), Expect = 1.1
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 25 FRCKSTQKVHWRTHRG 40
FR +S+ +H TH G
Sbjct: 22 FRARSSLAIHQATHSG 37
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A
{Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A*
Length = 364
Score = 27.7 bits (61), Expect = 1.7
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 77 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFH 112
+ L PN+ D + I EN+ S H
Sbjct: 187 EKGDNMILVGNPNWSQRPDLSADNPIDAENIMYSVH 222
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 52
Score = 24.8 bits (54), Expect = 3.5
Identities = 4/21 (19%), Positives = 7/21 (33%), Gaps = 7/21 (33%)
Query: 26 RCKST-------QKVHWRTHR 39
C Q+ W+ H+
Sbjct: 25 GCHKVNYCSTFCQRKDWKDHQ 45
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 24.4 bits (54), Expect = 3.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS VH RTH G
Sbjct: 22 FNTKSNLMVHQRTHTG 37
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose
binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A
3pzv_A
Length = 327
Score = 26.4 bits (58), Expect = 4.1
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 77 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFH 112
D + + + + ++A + D N+ + H
Sbjct: 189 NDPDNIIIVGTGTWSQDVNDAADDQLKDANVMYALH 224
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 24.4 bits (54), Expect = 4.3
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS VH R+H G
Sbjct: 22 FSLKSQLIVHQRSHTG 37
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal
binding protein; NMR {Homo sapiens}
Length = 60
Score = 24.5 bits (53), Expect = 4.5
Identities = 4/21 (19%), Positives = 5/21 (23%), Gaps = 7/21 (33%)
Query: 26 RCKST-------QKVHWRTHR 39
C + Q W H
Sbjct: 29 GCNTARYCGSFCQHKDWEKHH 49
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 25.0 bits (54), Expect = 4.5
Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 7/21 (33%)
Query: 26 RCKST-------QKVHWRTHR 39
RC++ Q HW H
Sbjct: 31 RCQNEWYCCRECQVKHWEKHG 51
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 24.0 bits (53), Expect = 5.1
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 25 FRCKSTQKVHWRTHRG 40
F HW TH
Sbjct: 22 FSGSYRLTQHWITHTR 37
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 24.0 bits (53), Expect = 5.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS VH RTH G
Sbjct: 22 FIWKSLLIVHERTHAG 37
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 24.5 bits (53), Expect = 5.7
Identities = 4/21 (19%), Positives = 5/21 (23%), Gaps = 7/21 (33%)
Query: 26 RCKST-------QKVHWRTHR 39
C + Q W H
Sbjct: 33 GCNTARYCGSFCQHKDWEKHH 53
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035,
plasmid, DNA binding protein; HET: AGS EPE; 1.83A
{Streptococcus pyogenes}
Length = 298
Score = 25.7 bits (57), Expect = 5.8
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 65 AHQVVEEGYEFFADKKLV 82
+EE Y+ + LV
Sbjct: 229 IKSNLEELYKQHKEDNLV 246
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.85.1.1
Length = 60
Score = 24.1 bits (52), Expect = 6.5
Identities = 4/21 (19%), Positives = 5/21 (23%), Gaps = 7/21 (33%)
Query: 26 RCKST-------QKVHWRTHR 39
C + Q W H
Sbjct: 31 GCNTARYCGSFCQHKDWEKHH 51
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KST +H R HRG
Sbjct: 22 FIQKSTLSMHQRIHRG 37
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family
5, michaelis complex, SKEW-BOAT, distortion; 0.95A
{Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A*
1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A*
1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A*
1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A
Length = 303
Score = 25.6 bits (56), Expect = 6.7
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 77 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHI 113
D + + + + +A + D N+ +FH
Sbjct: 165 NDPNNIIIVGTGTWSQDVHHAADNQLADPNVMYAFHF 201
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 6.9
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS VH RTH G
Sbjct: 22 FNTKSNLIVHQRTHTG 37
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 25.6 bits (56), Expect = 7.0
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 5/89 (5%)
Query: 7 LNGNGAQPNDNFFRDRVLFRCKSTQKVHWRTHRGVSYTFG----ADMVHEFLKKFNIDLV 62
L+G GA P N D Q W H G G +++ E ++ +
Sbjct: 428 LSGRGAAPIYNLMEDAATAEISRAQVWQWIRHEGGKLNDGRNITLELMEELKEEELAKIE 487
Query: 63 CRAHQVVEEGYEFFADKKLVT-LFSAPNY 90
+ + F L T L +
Sbjct: 488 REIGKEAFKKGRFQEATTLFTNLVRNDEF 516
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 7.3
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 25 FRCKSTQKVHWRTHRG 40
F C+ H H G
Sbjct: 22 FICRRDLYTHHMVHTG 37
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 23.7 bits (52), Expect = 7.4
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 25 FRCKSTQKVHWRTHRG 40
F+ KS+ H R+H G
Sbjct: 22 FKTKSSLICHRRSHTG 37
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.7 bits (52), Expect = 7.9
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS +H RTH G
Sbjct: 22 FSSKSYLIIHMRTHSG 37
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.6 bits (52), Expect = 8.3
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS H RTH G
Sbjct: 22 FSQKSILSAHQRTHTG 37
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family
5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP:
c.1.8.3 PDB: 1tvp_A*
Length = 293
Score = 25.2 bits (55), Expect = 8.3
Identities = 7/37 (18%), Positives = 13/37 (35%)
Query: 77 ADKKLVTLFSAPNYCGEFDNAGAMMIVDENLTCSFHI 113
D + + P + + D A I N+ + H
Sbjct: 159 IDPDNLIVVGTPTWSQDVDVASQNPIDRANIAYTLHF 195
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 23.2 bits (51), Expect = 8.8
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 25 FRCKSTQKVHWRTHRG 40
FR T K H R H G
Sbjct: 21 FRHLQTLKSHLRIHTG 36
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 9.4
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS VH + H G
Sbjct: 22 FTKKSQLHVHQQIHTG 37
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 23.3 bits (51), Expect = 9.8
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 25 FRCKSTQKVHWRTHRG 40
F KS VH R H G
Sbjct: 22 FIKKSQLHVHQRIHTG 37
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.136 0.411
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,181,205
Number of extensions: 120717
Number of successful extensions: 442
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 52
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)