RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5383
         (143 letters)



>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
           sapiens), beta isoform [TaxId: 9606]}
          Length = 294

 Score =  126 bits (318), Expect = 3e-37
 Identities = 59/78 (75%), Positives = 70/78 (89%)

Query: 39  RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
           RGVS+TFGA++V +FL K ++DL+CRAHQVVE+GYEFFA ++LVTLFSAPNYCGEFDNAG
Sbjct: 216 RGVSFTFGAEVVAKFLHKHDLDLICRAHQVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAG 275

Query: 99  AMMIVDENLTCSFHIMKP 116
           AMM VDE L CSF I+KP
Sbjct: 276 AMMSVDETLMCSFQILKP 293


>d3c5wc1 d.159.1.3 (C:6-293) Protein phosphatase 2A catalytic
           subunit alpha isoform, PP2A-alpha {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 288

 Score =  122 bits (307), Expect = 1e-35
 Identities = 36/78 (46%), Positives = 46/78 (58%)

Query: 39  RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKKLVTLFSAPNYCGEFDNAG 98
           RG  YTFG D+   F     + LV RAHQ+V EGY +  D+ +VT+FSAPNYC    N  
Sbjct: 209 RGAGYTFGQDISETFNHANGLTLVSRAHQLVMEGYNWCHDRNVVTIFSAPNYCYRCGNQA 268

Query: 99  AMMIVDENLTCSFHIMKP 116
           A+M +D+ L  SF    P
Sbjct: 269 AIMELDDTLKYSFLQFDP 286


>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 324

 Score =  120 bits (301), Expect = 2e-34
 Identities = 36/105 (34%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 13  QPNDNFFRDRVLFRCKSTQKVHWRTHRGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEG 72
           QP D+     +L+     Q     + RGVS  FG D+   FL++ N+D + R+H+V  EG
Sbjct: 199 QPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTKAFLEENNLDYIIRSHEVKAEG 258

Query: 73  YEFFADKKLVTLFSAPNYCGEFDNAGAMMIVD-ENLTCSFHIMKP 116
           YE     + VT+FSAPNYC +  N  + + +   +L   FH    
Sbjct: 259 YEVAHGGRCVTVFSAPNYCDQMGNKASYIHLQGSDLRPQFHQFTA 303


>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score =  104 bits (260), Expect = 9e-28
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)

Query: 39  RGVSYTFGADMVHEFLKKFNIDLVCRAHQVVEEGYEFFADKK------LVTLFSAPNYCG 92
           RG SY +    V EFL+  N+  + RAH+  + GY  +   +      L+T+FSAPNY  
Sbjct: 241 RGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLD 300

Query: 93  EFDNAGAMMIVDENLTC 109
            ++N  A++  + N+  
Sbjct: 301 VYNNKAAVLKYENNVMN 317


>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 115

 Score = 26.8 bits (59), Expect = 0.58
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 1   MLSMKYLNGNGAQPNDNFFRDRVLFRC------KSTQKVHWRTHRGVSYTFGADMVHEFL 54
           +L  ++ NG G     N+ R  +L+R       K+   +        S            
Sbjct: 34  LLDQRFFNGIG-----NYLRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIR-T 87

Query: 55  KKFNIDLVCRAHQVVEEGYE 74
           K  N DL+   H V +E  +
Sbjct: 88  KLQNPDLLELCHSVPKEVVQ 107


>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 33

 Score = 24.9 bits (55), Expect = 0.69
 Identities = 6/16 (37%), Positives = 6/16 (37%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F   S    H R H G
Sbjct: 17 FSRSSILVQHQRVHTG 32


>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 29

 Score = 24.6 bits (54), Expect = 1.00
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F        H +TH+ 
Sbjct: 12 FMRSDHLSKHIKTHQN 27


>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 28

 Score = 24.1 bits (53), Expect = 1.1
 Identities = 6/16 (37%), Positives = 6/16 (37%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F        H RTH G
Sbjct: 13 FSRSDHLTTHIRTHTG 28


>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
          protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 38

 Score = 24.4 bits (53), Expect = 1.2
 Identities = 7/16 (43%), Positives = 7/16 (43%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F   S    H RTH G
Sbjct: 22 FSHSSDLSKHRRTHTG 37


>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 31

 Score = 24.2 bits (53), Expect = 1.4
 Identities = 6/16 (37%), Positives = 7/16 (43%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F      + H RTH G
Sbjct: 14 FTRSDELQRHKRTHTG 29


>d1dk0a_ d.35.1.1 (A:) Heme-binding protein A (HasA) {Serratia
           marcescens [TaxId: 615]}
          Length = 173

 Score = 25.9 bits (57), Expect = 1.7
 Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 92  GEFDNAGAMMIVDENLTCSF-----HIMKPKKKILEFLSSVMSGEGSSSSIKKNK 141
               N     +   NLT +      H +  +   L F   +  G+ S  SI+   
Sbjct: 57  SSTANQVTAFVAGGNLTYTLFNEPAHTLYGQLDSLSFGDGLSGGDTSPYSIQVPD 111


>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
          Saccharomyces cerevisiae sequence}
          Length = 29

 Score = 23.7 bits (52), Expect = 1.8
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F  +   K H+R+H  
Sbjct: 12 FARQEHLKRHYRSHTN 27


>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 30

 Score = 23.8 bits (52), Expect = 1.9
 Identities = 5/16 (31%), Positives = 7/16 (43%)

Query: 25 FRCKSTQKVHWRTHRG 40
          +      K H R+H G
Sbjct: 14 YSRLENLKTHLRSHTG 29


>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 23.5 bits (51), Expect = 2.5
 Identities = 4/19 (21%), Positives = 10/19 (52%)

Query: 25 FRCKSTQKVHWRTHRGVSY 43
          FR K    +H++ +   ++
Sbjct: 18 FRQKQLLDMHFKRYHDPNF 36


>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 36

 Score = 23.5 bits (51), Expect = 2.5
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F  K   K H + H  
Sbjct: 13 FNFKKHLKEHMKLHSD 28


>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 29

 Score = 23.0 bits (50), Expect = 2.9
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F   +    H R H G
Sbjct: 14 FSRSADLTRHIRIHTG 29


>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 37

 Score = 22.8 bits (49), Expect = 4.3
 Identities = 4/17 (23%), Positives = 6/17 (35%)

Query: 25 FRCKSTQKVHWRTHRGV 41
          F       +H + H  V
Sbjct: 21 FSRSDHLALHRKRHMLV 37


>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
          domain) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 30

 Score = 22.7 bits (49), Expect = 4.8
 Identities = 5/16 (31%), Positives = 6/16 (37%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F      + H R H G
Sbjct: 14 FSLDFNLRTHVRIHTG 29


>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 47

 Score = 23.0 bits (49), Expect = 5.4
 Identities = 4/16 (25%), Positives = 8/16 (50%)

Query: 25 FRCKSTQKVHWRTHRG 40
          F+ +   + H +TH  
Sbjct: 30 FKRRYNIRSHIQTHLE 45


>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 936

 Score = 24.7 bits (53), Expect = 6.0
 Identities = 9/22 (40%), Positives = 11/22 (50%)

Query: 45  FGADMVHEFLKKFNIDLVCRAH 66
              + V E LK   +DLV  AH
Sbjct: 122 KSPEEVFEALKNQTVDLVFTAH 143


>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia
           coli [TaxId: 562]}
          Length = 880

 Score = 24.3 bits (52), Expect = 7.0
 Identities = 5/22 (22%), Positives = 12/22 (54%)

Query: 45  FGADMVHEFLKKFNIDLVCRAH 66
              D + + ++  +++LV  AH
Sbjct: 114 LSEDTIKKAVESLSLELVLTAH 135


>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 72

 Score = 23.1 bits (49), Expect = 8.0
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 90  YCGEFDNAGAMMIVDENLTCSFHI 113
            CG  D+ G  M+  +      H 
Sbjct: 20  KCGTKDDDGERMLACDGCGVWHHT 43


>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
          protein 10, ZMYND10 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 47

 Score = 22.3 bits (47), Expect = 10.0
 Identities = 6/21 (28%), Positives = 8/21 (38%), Gaps = 7/21 (33%)

Query: 26 RCKST-------QKVHWRTHR 39
          RC++        Q  HW  H 
Sbjct: 24 RCQNEWYCCRECQVKHWEKHG 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 546,021
Number of extensions: 23754
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 29
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.7 bits)