Query psy5385
Match_columns 180
No_of_seqs 133 out of 166
Neff 5.4
Searched_HMMs 13730
Date Sat Aug 17 01:15:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5385.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5385hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jl1a_ c.55.3.1 (A:) RNase H 98.4 3.2E-08 2.3E-12 73.3 2.8 28 21-48 110-138 (152)
2 d1mu2a1 c.55.3.1 (A:430-555) H 98.2 2.3E-07 1.7E-11 67.6 3.0 28 21-48 97-125 (126)
3 d1rila_ c.55.3.1 (A:) RNase H 98.2 1.3E-07 9.1E-12 70.4 1.3 28 21-48 112-140 (147)
4 d1x62a2 g.39.1.3 (A:8-42) PDZ 32.1 7.4 0.00054 21.7 0.9 12 118-129 6-18 (35)
5 d1x64a1 g.39.1.3 (A:8-52) PDZ 26.1 10 0.00075 22.3 0.9 12 118-129 16-28 (45)
6 d1neea2 g.59.1.1 (A:99-135) Zi 24.8 9.4 0.00069 21.5 0.5 13 122-135 24-37 (37)
7 d1e4va2 g.41.2.1 (A:122-156) M 19.6 25 0.0018 19.2 1.7 12 118-129 20-32 (35)
8 d1kbea_ g.49.1.1 (A:) Kinase s 19.4 21 0.0015 20.8 1.3 20 110-129 4-24 (49)
9 d1d4ua2 g.39.1.5 (A:1-36) DNA 18.6 24 0.0017 19.7 1.4 17 111-127 17-34 (36)
10 d1zina2 g.41.2.1 (A:126-160) M 17.9 27 0.002 19.1 1.5 12 118-129 20-32 (35)
No 1
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]}
Probab=98.45 E-value=3.2e-08 Score=73.32 Aligned_cols=28 Identities=7% Similarity=-0.050 Sum_probs=24.8
Q ss_pred cCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385 21 TQETLRYLHAPSVVLLTIR-IARRYTILS 48 (180)
Q Consensus 21 ~~~~V~l~WIP~H~gipGN-~ADr~A~~s 48 (180)
....|+|+|||||+|++|| .||++|+.+
T Consensus 110 ~~~~V~~~wV~gH~g~~gNe~AD~LAk~a 138 (152)
T d1jl1a_ 110 GQHQIKWEWVKGHAGHPENERADELARAA 138 (152)
T ss_dssp TTCEEEEEECCSSTTCHHHHHHHHHHHHH
T ss_pred hcceeEEEEecccCCCccHHHHHHHHHHH
Confidence 4568999999999999999 999999743
No 2
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=98.23 E-value=2.3e-07 Score=67.63 Aligned_cols=28 Identities=7% Similarity=-0.038 Sum_probs=24.9
Q ss_pred cCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385 21 TQETLRYLHAPSVVLLTIR-IARRYTILS 48 (180)
Q Consensus 21 ~~~~V~l~WIP~H~gipGN-~ADr~A~~s 48 (180)
....|.|.|||||+|++|| .||++|+.+
T Consensus 97 ~~~~v~~~wV~gH~g~~gNe~AD~LA~~a 125 (126)
T d1mu2a1 97 KKEAIYVAWVPAHKGIGGNQEVDHLVSQG 125 (126)
T ss_dssp HCSEEEEEECCSSSCCTTHHHHHHHHHTT
T ss_pred hcceeEEEEEeCCCCCcchHHHHHHHHhh
Confidence 4568999999999999999 999999753
No 3
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]}
Probab=98.22 E-value=1.3e-07 Score=70.37 Aligned_cols=28 Identities=7% Similarity=-0.056 Sum_probs=24.8
Q ss_pred cCCceEEEEeccccccchh-HHHHhhhcC
Q psy5385 21 TQETLRYLHAPSVVLLTIR-IARRYTILS 48 (180)
Q Consensus 21 ~~~~V~l~WIP~H~gipGN-~ADr~A~~s 48 (180)
....|+|.|||||+|++|| .||++|+.+
T Consensus 112 ~~~~v~~~wVkgHsg~~gNe~AD~LAk~a 140 (147)
T d1rila_ 112 APHRVRFHFVKGHTGHPENERVDREARRQ 140 (147)
T ss_dssp TTSEEECCCCCGGGSCTHHHHHHHHHHHH
T ss_pred hhcccceEEccCCCCCcchHHHHHHHHHH
Confidence 4567999999999999999 999999743
No 4
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.09 E-value=7.4 Score=21.69 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=9.3
Q ss_pred CCCCCcc-cCCcc
Q psy5385 118 SPQPTCR-CGDIL 129 (180)
Q Consensus 118 ~d~p~C~-Cg~~~ 129 (180)
.--|.|+ ||.++
T Consensus 6 qklp~CdkCg~GI 18 (35)
T d1x62a2 6 QKLPMCDKCGTGI 18 (35)
T ss_dssp CCCCCCSSSCCCC
T ss_pred ccCccccccCCCc
Confidence 3459999 99875
No 5
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=26.11 E-value=10 Score=22.29 Aligned_cols=12 Identities=33% Similarity=0.908 Sum_probs=9.3
Q ss_pred CCCCCcc-cCCcc
Q psy5385 118 SPQPTCR-CGDIL 129 (180)
Q Consensus 118 ~d~p~C~-Cg~~~ 129 (180)
.--|.|+ ||.++
T Consensus 16 QkLP~CdkCg~GI 28 (45)
T d1x64a1 16 QRMPLCDKCGSGI 28 (45)
T ss_dssp CSCCBCTTTCCBC
T ss_pred ccCccccccCCCc
Confidence 3459999 99875
No 6
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=24.79 E-value=9.4 Score=21.54 Aligned_cols=13 Identities=31% Similarity=0.920 Sum_probs=10.7
Q ss_pred Ccc-cCCcccchhhh
Q psy5385 122 TCR-CGDILTTVKHI 135 (180)
Q Consensus 122 ~C~-Cg~~~QTv~HI 135 (180)
.|+ ||+.- +|++|
T Consensus 24 ~C~aCGa~r-~V~~I 37 (37)
T d1neea2 24 KCEACGAKA-PLKNV 37 (37)
T ss_dssp ECSTTSCCC-CSCCC
T ss_pred EeccCCCCc-ccccC
Confidence 599 99988 88765
No 7
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=19.63 E-value=25 Score=19.19 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=9.3
Q ss_pred CCCCCcc-cCCcc
Q psy5385 118 SPQPTCR-CGDIL 129 (180)
Q Consensus 118 ~d~p~C~-Cg~~~ 129 (180)
.....|+ ||..|
T Consensus 20 k~~g~CD~cg~~L 32 (35)
T d1e4va2 20 KVEGKDDVTGEEL 32 (35)
T ss_dssp SSTTBCTTTCCBC
T ss_pred ccCCcccCCCCEe
Confidence 4456899 99887
No 8
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.40 E-value=21 Score=20.77 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=11.6
Q ss_pred ccccccCCCCCCCcc-cCCcc
Q psy5385 110 THSYLFTRSPQPTCR-CGDIL 129 (180)
Q Consensus 110 th~~l~~~~d~p~C~-Cg~~~ 129 (180)
+|.|.+..--+|+|+ |+..+
T Consensus 4 ~H~F~~~~~~~~tC~~C~~~l 24 (49)
T d1kbea_ 4 THRFSTKSWLSQVCNVCQKSM 24 (49)
T ss_dssp CCCEEEECCSSCCCSSSCCSS
T ss_pred ccEEeecCcCCCCchhhchhh
Confidence 344433222356799 99766
No 9
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.62 E-value=24 Score=19.68 Aligned_cols=17 Identities=47% Similarity=0.940 Sum_probs=14.7
Q ss_pred cccccCCCCCCCcc-cCC
Q psy5385 111 HSYLFTRSPQPTCR-CGD 127 (180)
Q Consensus 111 h~~l~~~~d~p~C~-Cg~ 127 (180)
.+||++--|-+.|+ |..
T Consensus 17 DSYL~~~Fd~~vCD~CRD 34 (36)
T d1d4ua2 17 DSYLMDHFDLPTCDDCRD 34 (36)
T ss_dssp CSSSTTTTSCCCCTTTCS
T ss_pred HHHHHHcCCchhcccccC
Confidence 47999999999999 974
No 10
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.91 E-value=27 Score=19.07 Aligned_cols=12 Identities=33% Similarity=0.816 Sum_probs=9.2
Q ss_pred CCCCCcc-cCCcc
Q psy5385 118 SPQPTCR-CGDIL 129 (180)
Q Consensus 118 ~d~p~C~-Cg~~~ 129 (180)
.....|+ ||..+
T Consensus 20 k~~g~CD~cG~~L 32 (35)
T d1zina2 20 AKPGVCDKCGGEL 32 (35)
T ss_dssp SSTTBCTTTCCBE
T ss_pred CCCCcCCCCCCCc
Confidence 4557899 99876
Done!