RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5385
(180 letters)
>gnl|CDD|192050 pfam08508, DUF1746, Fungal domain of unknown function (DUF1746).
This is a fungal domain of unknown function.
Length = 115
Score = 30.0 bits (68), Expect = 0.25
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 27 YLHAPSVVLLTIRIARRYTILSPQSSNLMNLCRTQTECLIVLVPN 71
Y S LL IR +++ L+P+ S + + + +L+ N
Sbjct: 14 YYMDCSFFLLLIRAIVQFSFLTPKPSGELKPPANKPFLVAILLSN 58
>gnl|CDD|232812 TIGR00075, hypD, hydrogenase expression/formation protein HypD.
HypD is involved in the hyp operon which is needed for
the activity of the three hydrogenase isoenzymes in
Escherichia coli. HypD is one of the genes needed for
formation of these enzymes. This protein has been found
in gram-negative and gram-positive bacteria and Archaea
[Protein fate, Protein modification and repair].
Length = 369
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 115 FTRSPQPTCRCGDILTTVKHILTCPL 140
T +P C CG+IL + L CPL
Sbjct: 313 KTPTPNKGCICGEILKGIAKPLDCPL 338
>gnl|CDD|223461 COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General
function prediction only].
Length = 291
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 60 TQTECLIVLVPNGNKLKSIKPNIEKWPSSNRKNRLEEVVLTRMRIGHTRLTHSYLF 115
T L+V + + L +++P+ + V R G H+ +F
Sbjct: 159 TGLPDLLVPLESLEALDALRPDFSALTELSAGGGG-VYVFAREGAGAEADFHARMF 213
>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family
protein. Members of this model form a distinct subset
of the larger family of oxidoreductases that includes
zinc-binding alcohol dehydrogenases and NADPH:quinone
reductases (pfam00107). While some current members of
this family carry designations as putative alginate
lyase, it seems no sequence with a direct
characterization as such is detected by this model
[Energy metabolism, Fermentation].
Length = 336
Score = 28.2 bits (63), Expect = 2.2
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)
Query: 119 PQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPS----LTDETTGVDAK-------FKP 167
P+P D+L VK I P+D ++R+ + L + GV FKP
Sbjct: 23 PKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLFKP 82
Query: 168 NEE 170
+E
Sbjct: 83 GDE 85
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 27.4 bits (61), Expect = 4.4
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 111 HSYLFTRSPQPTCRCGDILTTVKHILTCP 139
H +L SP TVK L C
Sbjct: 96 HEFLVRNSPHSDVGAESGDETVKSSLDCS 124
>gnl|CDD|223486 COG0409, HypD, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 364
Score = 26.9 bits (60), Expect = 7.0
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 121 PTCRCGDILTTVKHILTCPL 140
C CG+IL + CPL
Sbjct: 313 KACICGEILRGLAKPTDCPL 332
>gnl|CDD|237892 PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD;
Provisional.
Length = 364
Score = 26.6 bits (60), Expect = 7.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 120 QPTCRCGDILTTVKHILTCPL 140
P CRCG++L CPL
Sbjct: 310 PPACRCGEVLRGKAKPTDCPL 330
>gnl|CDD|223007 PHA03187, PHA03187, UL14 tegument protein; Provisional.
Length = 322
Score = 26.5 bits (58), Expect = 8.4
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 118 SPQPTCRCGDILTTVKHILTCPLDIQLRSSLPNPPSLTDETTGV 161
+P R GD ++H T P+ + PN + V
Sbjct: 218 TPDEGLRPGDQTRDLEHHSTAPMGTFRLVTHPNVLASERRRLDV 261
>gnl|CDD|237990 cd00023, BBI, Bowman-Birk type proteinase inhibitor (BBI); family
of plant serine protease inhibitors that block trypsin
or chymotrypsin.They are either single-headed (one
reactive site, one inactive site, present mainly in
monocotyledonous seeds) or double-headed (two reactive
sites, present mainly in dicotyledonous seeds).
Length = 55
Score = 24.6 bits (54), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 114 LFTRSPQPTCRCGDIL 129
+ TRS P CRC D++
Sbjct: 6 VCTRSIPPQCRCVDVV 21
>gnl|CDD|216789 pfam01924, HypD, Hydrogenase formation hypA family. HypD is
involved in hydrogenase formation. It contains many
possible metal binding residues, which may bind to
nickel. Transposon Tn5 insertions into hypD resulted in
R. leguminosarum mutants that lacked any hydrogenase
activity in symbiosis with peas.
Length = 355
Score = 26.3 bits (59), Expect = 9.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 121 PTCRCGDILTTVKHILTCPL 140
C CG+IL CPL
Sbjct: 305 KGCICGEILRGKAKPTDCPL 324
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.131 0.395
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,570,321
Number of extensions: 740302
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 11
Length of query: 180
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 89
Effective length of database: 6,901,388
Effective search space: 614223532
Effective search space used: 614223532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)