Query psy5386
Match_columns 287
No_of_seqs 218 out of 1512
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 01:15:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02713 hypothetical protein; 99.9 2E-23 4.4E-28 209.3 10.4 138 21-161 4-168 (557)
2 KOG4441|consensus 99.9 1.9E-23 4.1E-28 209.9 9.4 146 13-159 7-177 (571)
3 PHA02790 Kelch-like protein; P 99.8 5.7E-21 1.2E-25 188.5 9.9 109 31-142 11-123 (480)
4 PF00651 BTB: BTB/POZ domain; 99.8 3.8E-20 8.3E-25 145.9 10.3 105 33-138 1-110 (111)
5 PHA03098 kelch-like protein; P 99.8 2.7E-19 5.9E-24 177.8 9.4 100 39-140 6-106 (534)
6 smart00225 BTB Broad-Complex, 99.7 6.4E-17 1.4E-21 120.6 8.0 88 44-132 1-90 (90)
7 KOG4350|consensus 99.7 4E-17 8.6E-22 154.0 7.8 123 23-146 25-152 (620)
8 KOG2075|consensus 99.5 9.7E-15 2.1E-19 140.4 7.7 127 19-145 91-223 (521)
9 KOG4591|consensus 99.4 7.5E-13 1.6E-17 115.2 6.1 116 22-139 46-166 (280)
10 KOG4682|consensus 99.1 2.3E-10 4.9E-15 108.5 9.1 112 33-146 60-177 (488)
11 KOG0783|consensus 98.8 1.5E-09 3.3E-14 110.3 3.6 98 41-138 709-814 (1267)
12 KOG0783|consensus 98.5 3.5E-07 7.6E-12 93.5 8.0 102 29-131 541-681 (1267)
13 KOG2838|consensus 98.1 4.2E-06 9.1E-11 76.5 5.6 109 26-135 114-229 (401)
14 KOG2716|consensus 98.0 3.1E-05 6.8E-10 69.6 8.7 92 45-138 7-104 (230)
15 KOG3473|consensus 97.9 8.2E-05 1.8E-09 58.0 7.9 79 45-124 19-112 (112)
16 KOG2838|consensus 97.9 1.6E-05 3.4E-10 72.9 4.6 110 29-138 222-387 (401)
17 smart00512 Skp1 Found in Skp1 97.7 9.8E-05 2.1E-09 58.3 6.7 80 44-124 3-104 (104)
18 PF02214 BTB_2: BTB/POZ domain 97.6 7.2E-05 1.6E-09 57.6 4.5 85 45-131 1-94 (94)
19 KOG1724|consensus 97.6 0.00025 5.4E-09 60.7 7.4 91 45-136 7-124 (162)
20 PF03931 Skp1_POZ: Skp1 family 97.5 0.00047 1E-08 49.5 6.9 57 45-102 3-59 (62)
21 KOG0511|consensus 97.3 8.5E-05 1.8E-09 70.7 1.6 125 53-178 301-460 (516)
22 COG5201 SKP1 SCF ubiquitin lig 97.1 0.0017 3.8E-08 53.3 6.8 92 44-136 3-119 (158)
23 KOG0511|consensus 96.9 0.00035 7.5E-09 66.7 1.2 90 42-131 149-238 (516)
24 PF11822 DUF3342: Domain of un 96.7 0.0013 2.8E-08 61.8 3.1 86 53-138 14-103 (317)
25 KOG1987|consensus 96.1 0.003 6.6E-08 58.3 2.2 88 52-139 109-201 (297)
26 KOG1665|consensus 95.5 0.054 1.2E-06 48.8 7.3 88 45-133 11-105 (302)
27 KOG2714|consensus 95.2 0.064 1.4E-06 52.3 7.4 84 45-129 13-102 (465)
28 KOG2715|consensus 93.6 0.32 6.8E-06 42.0 7.3 93 45-138 23-121 (210)
29 KOG3840|consensus 88.7 1 2.2E-05 42.4 5.8 81 44-125 97-185 (438)
30 PF01466 Skp1: Skp1 family, di 87.4 0.75 1.6E-05 34.3 3.5 33 106-138 10-42 (78)
31 KOG2723|consensus 60.1 42 0.0009 30.3 7.3 94 41-136 6-107 (221)
32 PHA02790 Kelch-like protein; P 58.5 16 0.00035 36.3 4.9 41 95-138 111-151 (480)
33 PHA03098 kelch-like protein; P 51.8 40 0.00088 33.5 6.6 33 106-138 104-136 (534)
34 PF09593 Pathogen_betaC1: Beta 45.8 46 0.00099 27.1 4.7 80 43-125 14-96 (117)
35 KOG1778|consensus 36.5 25 0.00055 33.4 2.2 91 44-135 27-154 (319)
36 KOG4350|consensus 34.8 20 0.00044 35.3 1.3 73 66-140 93-178 (620)
37 PF07707 BACK: BTB And C-termi 30.8 59 0.0013 24.2 3.2 26 113-138 2-27 (103)
38 KOG3863|consensus 24.2 12 0.00027 38.3 -2.2 40 31-76 3-42 (604)
39 KOG3806|consensus 23.1 2.3E+02 0.005 24.7 5.6 68 26-105 68-136 (177)
40 smart00875 BACK BTB And C-term 20.7 94 0.002 22.7 2.6 25 114-138 3-27 (101)
No 1
>PHA02713 hypothetical protein; Provisional
Probab=99.89 E-value=2e-23 Score=209.31 Aligned_cols=138 Identities=22% Similarity=0.313 Sum_probs=119.5
Q ss_pred eccccHHHHHHHHHHHHhCCCcccEEEEccC-CeEEEEecccccccCHHHHHhhcCC--CC-CCCEEEeCCCCHHHHHHH
Q psy5386 21 RWNNHQNNLLGVFSQLLHDESLVDVTLACSE-GHSIRAHKVVLSACSSYFQSLFIDH--PS-RHPIVILKDVCFSELRTL 96 (287)
Q Consensus 21 ~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~-g~~f~aHk~VLaa~S~yFr~mf~~~--e~-~~~~I~L~dv~~~~f~~l 96 (287)
....|...+++.|++||.++.+|||+|+ ++ |+.|+|||+||||+|+||++||.++ +. .+..|.|.++++++|+.|
T Consensus 4 ~~~~h~~~~l~~l~~lr~~~~l~DV~L~-v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~l 82 (557)
T PHA02713 4 DDIKHNRRVVSNISNLLDDDILCDVIIT-IGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNI 82 (557)
T ss_pred chhhhhHHHHHHHHHHHhCCCCCCEEEE-eCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHH
Confidence 4568999999999999999999999998 55 8999999999999999999999986 33 367899999999999999
Q ss_pred HHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCC-----------------------CccccccCCC
Q psy5386 97 IEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPP-----------------------SQENESSSAE 153 (287)
Q Consensus 97 L~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~-----------------------~~~~~~~v~~ 153 (287)
|+|+|||+ ++.+++++||.+|++||++.|++.|++||.......+ ++++|.++.+
T Consensus 83 l~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~ 160 (557)
T PHA02713 83 VQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT 160 (557)
T ss_pred HHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC
Confidence 99999997 6889999999999999999999999999987654332 2256777777
Q ss_pred CcccchHH
Q psy5386 154 PPAHSTAL 161 (287)
Q Consensus 154 ~~~~~~~~ 161 (287)
.++|..+.
T Consensus 161 ~~ef~~L~ 168 (557)
T PHA02713 161 TDAFKKTV 168 (557)
T ss_pred ChhhhhCC
Confidence 77765433
No 2
>KOG4441|consensus
Probab=99.89 E-value=1.9e-23 Score=209.88 Aligned_cols=146 Identities=21% Similarity=0.317 Sum_probs=129.5
Q ss_pred CCCcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCH
Q psy5386 13 MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCF 90 (287)
Q Consensus 13 ~~~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~ 90 (287)
+......+..+.|+..+++.|+.+|..+.+|||++. +++++|+|||+||||+|+||++||.++ ++.+.+|.|.++++
T Consensus 7 ~~~~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~-v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v~~ 85 (571)
T KOG4441|consen 7 IFNSTSEFTDPSHSKFLLQGLNELREEGLLCDVTLL-VGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGVDP 85 (571)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhCCCceEEEE-ECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecCCH
Confidence 333445678899999999999999999999999998 788999999999999999999999975 78889999999999
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCC-----------------------Cccc
Q psy5386 91 SELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPP-----------------------SQEN 147 (287)
Q Consensus 91 ~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~-----------------------~~~~ 147 (287)
++++.+|+|+|||++.|+.+++++|+.+|++|||..+.+.|.+||.+.+...+ +.+|
T Consensus 86 ~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~ 165 (571)
T KOG4441|consen 86 ETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSNCLGIRRFAELHSCTELLEVADEYILQH 165 (571)
T ss_pred HHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987654332 2356
Q ss_pred cccCCCCcccch
Q psy5386 148 ESSSAEPPAHST 159 (287)
Q Consensus 148 ~~~v~~~~~~~~ 159 (287)
|.++...++|..
T Consensus 166 F~~v~~~eefl~ 177 (571)
T KOG4441|consen 166 FAEVSKTEEFLL 177 (571)
T ss_pred HHHHhccHHhhC
Confidence 777777777654
No 3
>PHA02790 Kelch-like protein; Provisional
Probab=99.84 E-value=5.7e-21 Score=188.46 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=96.9
Q ss_pred HHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEe--CCCCHHHHHHHHHHhhcCccc
Q psy5386 31 GVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVIL--KDVCFSELRTLIEFMYRGEVN 106 (287)
Q Consensus 31 ~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L--~dv~~~~f~~lL~fiYTg~l~ 106 (287)
+.+-+++..+.+|||+++ .|++|+|||+|||++|+|||+||.++ |+. ..|.+ .++++++|+.||+|+|||++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~--~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v~~~~l~~lldy~YTg~l~ 87 (480)
T PHA02790 11 KNILALSMTKKFKTIIEA--IGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDLDIHSLTSIVIYSYTGKVY 87 (480)
T ss_pred hhHHHHHhhhhhceEEEE--cCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCcCHHHHHHHHHhheeeeEE
Confidence 456688999999999996 46799999999999999999999986 443 34554 489999999999999999999
Q ss_pred cchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCC
Q psy5386 107 VEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAP 142 (287)
Q Consensus 107 i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~ 142 (287)
++.+|+++||.||++|||+.+++.|.+||...+...
T Consensus 88 it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~ 123 (480)
T PHA02790 88 IDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKE 123 (480)
T ss_pred EecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcc
Confidence 999999999999999999999999999998876543
No 4
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.83 E-value=3.8e-20 Score=145.93 Aligned_cols=105 Identities=28% Similarity=0.505 Sum_probs=93.3
Q ss_pred HHHHHhCCCcccEEEEccC-CeEEEEecccccccCHHHHHhhcCC-CCCC--CEEEeCCCCHHHHHHHHHHhhcCccccc
Q psy5386 33 FSQLLHDESLVDVTLACSE-GHSIRAHKVVLSACSSYFQSLFIDH-PSRH--PIVILKDVCFSELRTLIEFMYRGEVNVE 108 (287)
Q Consensus 33 L~~l~~~~~~~DV~l~~v~-g~~f~aHk~VLaa~S~yFr~mf~~~-e~~~--~~I~L~dv~~~~f~~lL~fiYTg~l~i~ 108 (287)
|+++++++.++|++|. ++ ++.|+|||.||+++|+||+.||.+. .... .+|.++++++++|..+|+|+|+|++.++
T Consensus 1 ~~~~~~~~~~~D~~i~-v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIR-VGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHHTTS--EEEE-ETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE
T ss_pred ChHHHcCCCCCCEEEE-ECCCEEEeechhhhhccchhhhhcccccccccccccccccccccccccccccccccCCcccCC
Confidence 6789999999999999 56 8999999999999999999999987 3333 3688899999999999999999999998
Q ss_pred -hhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 109 -YCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 109 -~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.+++.+++.+|++|+++.|++.|.++|..+
T Consensus 80 ~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 999999999999999999999999999753
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.78 E-value=2.7e-19 Score=177.80 Aligned_cols=100 Identities=20% Similarity=0.390 Sum_probs=93.6
Q ss_pred CCCcccEEEEc-cCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhcCccccchhhHHHHHH
Q psy5386 39 DESLVDVTLAC-SEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLK 117 (287)
Q Consensus 39 ~~~~~DV~l~~-v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~ 117 (287)
++.+|||+|.+ ++|+.|+|||+||+++|+||++||.++.. +..|.|.+ ++++|+.||+|+|||++.++.+++.+|+.
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~ 83 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILS 83 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHH
Confidence 88999999984 38999999999999999999999998766 68899999 99999999999999999999999999999
Q ss_pred HHhhcCchhHHHHHHHHHhccCC
Q psy5386 118 TAESLKVKGLAEMTQDLSTRSRT 140 (287)
Q Consensus 118 aA~~l~i~~L~~~c~~~l~~~~~ 140 (287)
+|++|+++.|++.|++||.....
T Consensus 84 ~A~~l~~~~l~~~C~~~l~~~l~ 106 (534)
T PHA03098 84 IANYLIIDFLINLCINYIIKIID 106 (534)
T ss_pred HHHHhCcHHHHHHHHHHHHHhCC
Confidence 99999999999999999987643
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.69 E-value=6.4e-17 Score=120.62 Aligned_cols=88 Identities=38% Similarity=0.688 Sum_probs=81.8
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCCCC--CCCEEEeCCCCHHHHHHHHHHhhcCccccchhhHHHHHHHHhh
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPS--RHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAES 121 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~--~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~ 121 (287)
|+++. ++|+.|++||.+|+++|+||+.||.+... ....|.++++++++|+.+|+|+|++++.+...++..++.+|++
T Consensus 1 dv~i~-v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~ 79 (90)
T smart00225 1 DVTLV-VGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADY 79 (90)
T ss_pred CeEEE-ECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHH
Confidence 78887 79999999999999999999999998643 5688999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHH
Q psy5386 122 LKVKGLAEMTQ 132 (287)
Q Consensus 122 l~i~~L~~~c~ 132 (287)
|+++.|++.|+
T Consensus 80 ~~~~~l~~~c~ 90 (90)
T smart00225 80 LQIPGLVELCE 90 (90)
T ss_pred HCcHHHHhhhC
Confidence 99999999884
No 7
>KOG4350|consensus
Probab=99.69 E-value=4e-17 Score=154.05 Aligned_cols=123 Identities=24% Similarity=0.359 Sum_probs=107.8
Q ss_pred cccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHHHHHHHHHh
Q psy5386 23 NNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSELRTLIEFM 100 (287)
Q Consensus 23 ~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~f~~lL~fi 100 (287)
-..+..+.+.+.+++....++||+|+ ++++.|+|||+|||+||.|||+|+.++ ++.+..|.|.+...++|+.+|+||
T Consensus 25 ~~i~~~fS~~~~~l~~~e~y~DVtfv-ve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYi 103 (620)
T KOG4350|consen 25 AAISNNFSQSFDELFTSEDYSDVTFV-VEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYI 103 (620)
T ss_pred hhhccchhHHHHHHhhcCcccceEEE-EeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHH
Confidence 34455667888999999999999998 799999999999999999999999986 677889999999999999999999
Q ss_pred hcCcccc---chhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCCCcc
Q psy5386 101 YRGEVNV---EYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQE 146 (287)
Q Consensus 101 YTg~l~i---~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~~~~ 146 (287)
|||++.+ ..+-..+.|.+|..|++..|.....+|+...+..++.|-
T Consensus 104 Ytg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCm 152 (620)
T KOG4350|consen 104 YTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCM 152 (620)
T ss_pred hhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceee
Confidence 9999976 456778899999999999999999999987766666663
No 8
>KOG2075|consensus
Probab=99.54 E-value=9.7e-15 Score=140.35 Aligned_cols=127 Identities=23% Similarity=0.318 Sum_probs=112.5
Q ss_pred eeeccccHHHHHHHHHHHHhCCCcccEEEEccC----CeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHH
Q psy5386 19 CLRWNNHQNNLLGVFSQLLHDESLVDVTLACSE----GHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSE 92 (287)
Q Consensus 19 ~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~----g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~ 92 (287)
-+.|..-..++.+..-.++++...+|+.+++.+ -+.|+|||.|||..|..|.+||.++ +....+|+++||.+.+
T Consensus 91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdvepaa 170 (521)
T KOG2075|consen 91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDVEPAA 170 (521)
T ss_pred CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCcChhH
Confidence 346777788899999999999999999998432 2689999999999999999999987 3446899999999999
Q ss_pred HHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCCCc
Q psy5386 93 LRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQ 145 (287)
Q Consensus 93 f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~~~ 145 (287)
|..+|+|||++.+.+..+++..+|.+|++|-++.|.+.|.+|++........+
T Consensus 171 Fl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf 223 (521)
T KOG2075|consen 171 FLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAF 223 (521)
T ss_pred hHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999999999999999999999998776544433
No 9
>KOG4591|consensus
Probab=99.37 E-value=7.5e-13 Score=115.24 Aligned_cols=116 Identities=23% Similarity=0.324 Sum_probs=99.4
Q ss_pred ccccHHHHHHHHHHHHhCCCcccEEEEccC--CeEEEEecccccccCHHHHHhhcCC-CCCCCEEEeCCCCHHHHHHHHH
Q psy5386 22 WNNHQNNLLGVFSQLLHDESLVDVTLACSE--GHSIRAHKVVLSACSSYFQSLFIDH-PSRHPIVILKDVCFSELRTLIE 98 (287)
Q Consensus 22 ~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~--g~~f~aHk~VLaa~S~yFr~mf~~~-e~~~~~I~L~dv~~~~f~~lL~ 98 (287)
-.++.+.|+.-...++.+.+|+|++|.+.+ ++.++|||.||||||.+++ |.++ .....+..+.|+++++|...++
T Consensus 46 ~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDad~Ea~~t~iR 123 (280)
T KOG4591|consen 46 PDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDADFEAFHTAIR 123 (280)
T ss_pred chhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhcccccCHHHHHHhhe
Confidence 457889999999999999999999999532 5789999999999999988 5543 2234567788999999999999
Q ss_pred HhhcCccccc--hhhHHHHHHHHhhcCchhHHHHHHHHHhccC
Q psy5386 99 FMYRGEVNVE--YCQLSTLLKTAESLKVKGLAEMTQDLSTRSR 139 (287)
Q Consensus 99 fiYTg~l~i~--~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~ 139 (287)
||||+++.+. .+.+.++..+|..|+++.|++.|++-+....
T Consensus 124 WIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l 166 (280)
T KOG4591|consen 124 WIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALL 166 (280)
T ss_pred eeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999885 4578899999999999999999999887554
No 10
>KOG4682|consensus
Probab=99.12 E-value=2.3e-10 Score=108.51 Aligned_cols=112 Identities=24% Similarity=0.355 Sum_probs=99.0
Q ss_pred HHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEe----CCCCHHHHHHHHHHhhcCccc
Q psy5386 33 FSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVIL----KDVCFSELRTLIEFMYRGEVN 106 (287)
Q Consensus 33 L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L----~dv~~~~f~~lL~fiYTg~l~ 106 (287)
...++.+|..+||++. .=|.+++.||.-| ..|+||++||.+- +++..+|.| ++|+..+|..++.-+|.+++.
T Consensus 60 yq~lf~q~enSDv~l~-alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve 137 (488)
T KOG4682|consen 60 YQNLFLQGENSDVILE-ALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE 137 (488)
T ss_pred HHHHHhcCCCcceehh-hccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee
Confidence 4568889999999997 5789999999999 5779999999985 566666666 459999999999999999999
Q ss_pred cchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCCCcc
Q psy5386 107 VEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQE 146 (287)
Q Consensus 107 i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~~~~ 146 (287)
|..+.+..+|++|.++++++|.+.|.+.|...+....+++
T Consensus 138 I~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta~~ 177 (488)
T KOG4682|consen 138 IKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTACG 177 (488)
T ss_pred ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhhhH
Confidence 9999999999999999999999999999998877666554
No 11
>KOG0783|consensus
Probab=98.85 E-value=1.5e-09 Score=110.30 Aligned_cols=98 Identities=20% Similarity=0.342 Sum_probs=75.4
Q ss_pred CcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCC--CCHHHHHHHHHHhh-cCcccc-----chhhH
Q psy5386 41 SLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKD--VCFSELRTLIEFMY-RGEVNV-----EYCQL 112 (287)
Q Consensus 41 ~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~d--v~~~~f~~lL~fiY-Tg~l~i-----~~~~v 112 (287)
..-|+.|.+-||+.|+|||++|+||..||..||..-+.....|.+.. +..+.|+.+|+|+| +++..+ ..+.+
T Consensus 709 e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~ 788 (1267)
T KOG0783|consen 709 ETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFM 788 (1267)
T ss_pred cceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhh
Confidence 44477777679999999999999999999999988643333455544 66999999999999 455543 23466
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 113 STLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 113 ~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
-+++.+||.|-|..|++.|++.|...
T Consensus 789 ~~il~iaDqlli~~Lk~Ice~~ll~k 814 (1267)
T KOG0783|consen 789 FEILSIADQLLILELKSICEQSLLRK 814 (1267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 77888888888888888888877544
No 12
>KOG0783|consensus
Probab=98.48 E-value=3.5e-07 Score=93.49 Aligned_cols=102 Identities=24% Similarity=0.372 Sum_probs=72.9
Q ss_pred HHHHHHHHHh----CCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCC--------------CCCCEEEeCCCCH
Q psy5386 29 LLGVFSQLLH----DESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP--------------SRHPIVILKDVCF 90 (287)
Q Consensus 29 ll~~L~~l~~----~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e--------------~~~~~I~L~dv~~ 90 (287)
+-+.+..++. .+.+.||+|. +|++.|+|||.||+++|++||.+|.... .....|.+.++.+
T Consensus 541 fe~sf~kLl~e~~~~ds~hDVtf~-vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~p 619 (1267)
T KOG0783|consen 541 FEGSFPKLLSEENYKDSFHDVTFY-VGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIPP 619 (1267)
T ss_pred chhhhHHHhhccccccccceEEEE-ecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCCH
Confidence 3444555543 4567899999 7999999999999999999999997631 1234456788999
Q ss_pred HHHHHHHHHhhcCccc--------------cchhhH-------HHHHHHHhhcCchhHHHHH
Q psy5386 91 SELRTLIEFMYRGEVN--------------VEYCQL-------STLLKTAESLKVKGLAEMT 131 (287)
Q Consensus 91 ~~f~~lL~fiYTg~l~--------------i~~~~v-------~~Ll~aA~~l~i~~L~~~c 131 (287)
..|+.+|.||||+..- +-.+|. +-++..+.++++-.|....
T Consensus 620 ~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~~ 681 (1267)
T KOG0783|consen 620 LMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPFS 681 (1267)
T ss_pred HHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhhh
Confidence 9999999999998431 112232 2366777777766665443
No 13
>KOG2838|consensus
Probab=98.11 E-value=4.2e-06 Score=76.55 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCE----EEeCCCCHHHHHHHHHHhh
Q psy5386 26 QNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPI----VILKDVCFSELRTLIEFMY 101 (287)
Q Consensus 26 ~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~----I~L~dv~~~~f~~lL~fiY 101 (287)
..++++.+...+......|+-|+ .....|+|||++|++||++|+.+...++..... |.+-+++.++|+.+|.|+|
T Consensus 114 a~sf~kD~ad~ye~k~c~dldii-FkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~dm~~feafLh~l~ 192 (401)
T KOG2838|consen 114 ANSFLKDFADGYERKVCGDLDII-FKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGFDMDAFEAFLHSLI 192 (401)
T ss_pred hhHHHHHHhhhhheeeeccceee-eeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhccChHHHHHHHHHHH
Confidence 35667777777777777888887 467899999999999999999999887544333 4445789999999999999
Q ss_pred cCcccc---chhhHHHHHHHHhhcCchhHHHHHHHHH
Q psy5386 102 RGEVNV---EYCQLSTLLKTAESLKVKGLAEMTQDLS 135 (287)
Q Consensus 102 Tg~l~i---~~~~v~~Ll~aA~~l~i~~L~~~c~~~l 135 (287)
||+.-. ...|+.-|.+++.-|+...-.+.-.+.|
T Consensus 193 tgEfgmEd~~fqn~diL~QL~edFG~~kkLd~Dmkgl 229 (401)
T KOG2838|consen 193 TGEFGMEDLGFQNSDILEQLCEDFGCFKKLDEDMKGL 229 (401)
T ss_pred hcccchhhcCCchHHHHHHHHHhhCCchhhhHHHHHH
Confidence 998754 3456777888888888765555444444
No 14
>KOG2716|consensus
Probab=97.99 E-value=3.1e-05 Score=69.65 Aligned_cols=92 Identities=24% Similarity=0.382 Sum_probs=76.0
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCC---CC-CCEEEeCCCCHHHHHHHHHHhhcCccccc--hhhHHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP---SR-HPIVILKDVCFSELRTLIEFMYRGEVNVE--YCQLSTLLKT 118 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e---~~-~~~I~L~dv~~~~f~~lL~fiYTg~l~i~--~~~v~~Ll~a 118 (287)
|.+- |||..|...+.-|.-...||++|+.++. .. ...|- =|=+|.-|+.||+||-.|.+.+. ...+.+|++=
T Consensus 7 vkLn-vGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IF-IDRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~E 84 (230)
T KOG2716|consen 7 VKLN-VGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIF-IDRSPKHFDTILNFMRDGDVDLPESEKELKELLRE 84 (230)
T ss_pred EEEe-cCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEE-ecCChhHHHHHHHhhhcccccCccchHHHHHHHHH
Confidence 4455 7999999999999999999999999862 11 12233 36789999999999998888875 4578899999
Q ss_pred HhhcCchhHHHHHHHHHhcc
Q psy5386 119 AESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 119 A~~l~i~~L~~~c~~~l~~~ 138 (287)
|.+|.+++|+++|...+...
T Consensus 85 A~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 85 AEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred HHHhhHHHHHHHHHHHhhhc
Confidence 99999999999999987643
No 15
>KOG3473|consensus
Probab=97.87 E-value=8.2e-05 Score=58.01 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=67.5
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCC----CCCCCEEEeCCCCHHHHHHHHHHh-----hcCc------cccch
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDH----PSRHPIVILKDVCFSELRTLIEFM-----YRGE------VNVEY 109 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~----e~~~~~I~L~dv~~~~f~~lL~fi-----YTg~------l~i~~ 109 (287)
|+++..||.+|-.-|-+ |.-|+-.|+||.+. +...++|.++++....++.+.+|+ |++. ..|.+
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ipp 97 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPP 97 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCH
Confidence 67777789999988887 77889999999974 456789999999999999999998 6654 46788
Q ss_pred hhHHHHHHHHhhcCc
Q psy5386 110 CQLSTLLKTAESLKV 124 (287)
Q Consensus 110 ~~v~~Ll~aA~~l~i 124 (287)
+.+.+||.+|++|.+
T Consensus 98 emaleLL~aAn~Lec 112 (112)
T KOG3473|consen 98 EMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHHhhhhcC
Confidence 999999999999864
No 16
>KOG2838|consensus
Probab=97.87 E-value=1.6e-05 Score=72.87 Aligned_cols=110 Identities=19% Similarity=0.374 Sum_probs=77.1
Q ss_pred HHHHHHHHHhCCCccc-EEEEccCCe--------------EEEEecccccccCHHHHHhhcCC-----C------CCCCE
Q psy5386 29 LLGVFSQLLHDESLVD-VTLACSEGH--------------SIRAHKVVLSACSSYFQSLFIDH-----P------SRHPI 82 (287)
Q Consensus 29 ll~~L~~l~~~~~~~D-V~l~~v~g~--------------~f~aHk~VLaa~S~yFr~mf~~~-----e------~~~~~ 82 (287)
|-..+..+++....-| +.+.++||+ +++|||+|.++||++||.++... + .....
T Consensus 222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkR 301 (401)
T KOG2838|consen 222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKR 301 (401)
T ss_pred hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCce
Confidence 3344455565554444 444444543 68999999999999999988652 2 23456
Q ss_pred EEeCC-CCHHHHH-HHHHHhhcCccccc----------------------------hhhHHHHHHHHhhcCchhHHHHHH
Q psy5386 83 VILKD-VCFSELR-TLIEFMYRGEVNVE----------------------------YCQLSTLLKTAESLKVKGLAEMTQ 132 (287)
Q Consensus 83 I~L~d-v~~~~f~-~lL~fiYTg~l~i~----------------------------~~~v~~Ll~aA~~l~i~~L~~~c~ 132 (287)
|.+.+ +=|..|. .+|.|+||+.++++ ...+.+|+.+|-+|.++.|...|+
T Consensus 302 IifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQa~e 381 (401)
T KOG2838|consen 302 IIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQACE 381 (401)
T ss_pred eechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 5555554 67899999887431 223467999999999999999999
Q ss_pred HHHhcc
Q psy5386 133 DLSTRS 138 (287)
Q Consensus 133 ~~l~~~ 138 (287)
..+...
T Consensus 382 ~Vir~a 387 (401)
T KOG2838|consen 382 DVIRKA 387 (401)
T ss_pred HHHHhh
Confidence 988743
No 17
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.73 E-value=9.8e-05 Score=58.30 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=63.9
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCCC---CCCCEEEeCCCCHHHHHHHHHHhhcCc-----------c----
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP---SRHPIVILKDVCFSELRTLIEFMYRGE-----------V---- 105 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e---~~~~~I~L~dv~~~~f~~lL~fiYTg~-----------l---- 105 (287)
-++|++.||..|.+.+.+. ..|..++.|+.... .....|.+++|+..+|+.+++||+--. +
T Consensus 3 ~v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD 81 (104)
T smart00512 3 YIKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWD 81 (104)
T ss_pred eEEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHH
Confidence 3678888999999999985 68899999997632 122589999999999999999996321 1
Q ss_pred ----ccchhhHHHHHHHHhhcCc
Q psy5386 106 ----NVEYCQLSTLLKTAESLKV 124 (287)
Q Consensus 106 ----~i~~~~v~~Ll~aA~~l~i 124 (287)
.++.+.+.+|+.||++|+|
T Consensus 82 ~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 82 AEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCC
Confidence 1566688999999999976
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.63 E-value=7.2e-05 Score=57.64 Aligned_cols=85 Identities=19% Similarity=0.224 Sum_probs=64.6
Q ss_pred EEEEccCCeEEEEeccccc-ccCHHHHHhhcCC-----CCCCCEEEeCCCCHHHHHHHHHHhhc-Cccccc-hhhHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLS-ACSSYFQSLFIDH-----PSRHPIVILKDVCFSELRTLIEFMYR-GEVNVE-YCQLSTLL 116 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLa-a~S~yFr~mf~~~-----e~~~~~I~L~dv~~~~f~~lL~fiYT-g~l~i~-~~~v~~Ll 116 (287)
|.|. |+|+.|.+-+..|. ....+|..|+... ......+.+ |-++..|+.||+|+-+ +.+... ...+..++
T Consensus 1 V~lN-VGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~ 78 (94)
T PF02214_consen 1 VRLN-VGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELL 78 (94)
T ss_dssp EEEE-ETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHH
T ss_pred CEEE-ECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHH
Confidence 5677 79999999999998 5567899999863 234456655 6799999999999999 677664 56889999
Q ss_pred HHHhhcCchhH-HHHH
Q psy5386 117 KTAESLKVKGL-AEMT 131 (287)
Q Consensus 117 ~aA~~l~i~~L-~~~c 131 (287)
.-|.+|++..| ++.|
T Consensus 79 ~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 79 EEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHT-HHHHBHHC
T ss_pred HHHHHcCCCccccCCC
Confidence 99999999998 7665
No 19
>KOG1724|consensus
Probab=97.58 E-value=0.00025 Score=60.73 Aligned_cols=91 Identities=22% Similarity=0.313 Sum_probs=73.7
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCCCCC--CEEEeCCCCHHHHHHHHHHhhcCc------------------
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRH--PIVILKDVCFSELRTLIEFMYRGE------------------ 104 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~--~~I~L~dv~~~~f~~lL~fiYTg~------------------ 104 (287)
+.|...||+.|.+-..+ +..|..++.++....-.. ..|.|++|....|..+|+|||--+
T Consensus 7 ikL~SsDG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i 85 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDI 85 (162)
T ss_pred EEEEccCCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCc
Confidence 56666799999999988 567788888887542222 479999999999999999998622
Q ss_pred -------cccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 105 -------VNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 105 -------l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
+.++..++.+|+.||.+|+|++|.++|++...
T Consensus 86 ~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va 124 (162)
T KOG1724|consen 86 PEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVA 124 (162)
T ss_pred cHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHH
Confidence 12455688999999999999999999999875
No 20
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=97.50 E-value=0.00047 Score=49.48 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=47.6
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhc
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYR 102 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYT 102 (287)
|+|+..||+.|.+.+.++ ..|..++.|+.+.......|.|++|+...|+.+++||+-
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~ 59 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH 59 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence 678878999999999995 688999999987543333899999999999999999973
No 21
>KOG0511|consensus
Probab=97.32 E-value=8.5e-05 Score=70.74 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=83.3
Q ss_pred eEEEEecccccccCHHHHHhhcCC--CCC----CCEEEeCCCCHHHHHHHHHHhhcCccccchhhHHHHHHHHhhcCch-
Q psy5386 53 HSIRAHKVVLSACSSYFQSLFIDH--PSR----HPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVK- 125 (287)
Q Consensus 53 ~~f~aHk~VLaa~S~yFr~mf~~~--e~~----~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~- 125 (287)
..++||++++ .|..||+.||.++ ++. .....++++...+.+.+++|+|+.+..+..+-+.+++..|+++-+.
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 4699999998 5668999999986 322 2345667888999999999999999999888888888888887554
Q ss_pred -h-HHHHHHHHHhcc--------------CC--------CCCC----ccccccCCCCcccchHHHHhhcCCCCcccchhh
Q psy5386 126 -G-LAEMTQDLSTRS--------------RT--------APPS----QENESSSAEPPAHSTALQQRLEASPPVIELTTI 177 (287)
Q Consensus 126 -~-L~~~c~~~l~~~--------------~~--------~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~e~i 177 (287)
. |+.++...+.+. .+ ++++ ..+........++.........|++..++++++
T Consensus 380 dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~ri~~rqeTDti 459 (516)
T KOG0511|consen 380 DRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPRIPARQETDTI 459 (516)
T ss_pred hhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccchhhhhcccchh
Confidence 1 222222222111 00 1111 123333444556666666666788888888886
Q ss_pred h
Q psy5386 178 K 178 (287)
Q Consensus 178 ~ 178 (287)
+
T Consensus 460 e 460 (516)
T KOG0511|consen 460 E 460 (516)
T ss_pred H
Confidence 5
No 22
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0017 Score=53.27 Aligned_cols=92 Identities=17% Similarity=0.209 Sum_probs=75.0
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhcCc-------------------
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGE------------------- 104 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYTg~------------------- 104 (287)
-|.|+..+|..|.+.+.+ |.+|-..+.|+.......-.|.+++|...+|..+++|+--.+
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D 81 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSD 81 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCcc
Confidence 467777899999999988 899999999987754444557788999999999999994221
Q ss_pred ------cccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 105 ------VNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 105 ------l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
+.++.+.+.++..+|+||.++.|.++|++...
T Consensus 82 ~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiva 119 (158)
T COG5201 82 FWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVA 119 (158)
T ss_pred HHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 12455677889999999999999999998875
No 23
>KOG0511|consensus
Probab=96.90 E-value=0.00035 Score=66.70 Aligned_cols=90 Identities=19% Similarity=0.148 Sum_probs=69.6
Q ss_pred cccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhcCccccchhhHHHHHHHHhh
Q psy5386 42 LVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAES 121 (287)
Q Consensus 42 ~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~ 121 (287)
..|+++...+|+.|-|||..|+++|.||...+..-.....+|+-..+-+.+|..||+|+|-..-.+-.+...+|+.+..+
T Consensus 149 ~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~heI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~k 228 (516)
T KOG0511|consen 149 CHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQGHEIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVK 228 (516)
T ss_pred ccchHHHhhccccccHHHHHHHhhhcccCchhhhhccccCchhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhh
Confidence 45888876678999999999999999998766554445566766778899999999999976444455566788888888
Q ss_pred cCchhHHHHH
Q psy5386 122 LKVKGLAEMT 131 (287)
Q Consensus 122 l~i~~L~~~c 131 (287)
|+++.|....
T Consensus 229 F~~e~l~~~~ 238 (516)
T KOG0511|consen 229 FSKEKLSLEI 238 (516)
T ss_pred ccHHHhHHHH
Confidence 8887765443
No 24
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.67 E-value=0.0013 Score=61.82 Aligned_cols=86 Identities=12% Similarity=0.176 Sum_probs=75.1
Q ss_pred eEEEEecccccccCHHHHHhhcC---CCCCCCEEEeC-CCCHHHHHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHH
Q psy5386 53 HSIRAHKVVLSACSSYFQSLFID---HPSRHPIVILK-DVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLA 128 (287)
Q Consensus 53 ~~f~aHk~VLaa~S~yFr~mf~~---~e~~~~~I~L~-dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~ 128 (287)
+.|.|.+-+|...=.||+..+.. +......|.|. ..+-.+|+=+++|++.....++.+|+..||.-|++|+|+.|.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lv 93 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLV 93 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHH
Confidence 67999999999999999999965 34444556664 478899999999999988899999999999999999999999
Q ss_pred HHHHHHHhcc
Q psy5386 129 EMTQDLSTRS 138 (287)
Q Consensus 129 ~~c~~~l~~~ 138 (287)
+.|.+|+.+.
T Consensus 94 e~cl~y~~~~ 103 (317)
T PF11822_consen 94 EECLQYCHDH 103 (317)
T ss_pred HHHHHHHHHh
Confidence 9999998654
No 25
>KOG1987|consensus
Probab=96.13 E-value=0.003 Score=58.32 Aligned_cols=88 Identities=18% Similarity=0.055 Sum_probs=73.0
Q ss_pred CeEEEEecccccccCHHHHHhhcCCC--CCCCEEEeCCCCHHHHHHHHHHhhcCccccchhhHH---HHHHHHhhcCchh
Q psy5386 52 GHSIRAHKVVLSACSSYFQSLFIDHP--SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLS---TLLKTAESLKVKG 126 (287)
Q Consensus 52 g~~f~aHk~VLaa~S~yFr~mf~~~e--~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~---~Ll~aA~~l~i~~ 126 (287)
++.+.+|+++++++++.|+.|+..+. .....+.+.+.+++.++.+..|.|+..-....+.+. .++.+|..++...
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~ 188 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH 188 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHH
Confidence 56799999999999999999998762 334455788999999999999999866555555554 8888999999999
Q ss_pred HHHHHHHHHhccC
Q psy5386 127 LAEMTQDLSTRSR 139 (287)
Q Consensus 127 L~~~c~~~l~~~~ 139 (287)
|+..|...+.+..
T Consensus 189 lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 189 LKLACMPVLLSLI 201 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987554
No 26
>KOG1665|consensus
Probab=95.49 E-value=0.054 Score=48.78 Aligned_cols=88 Identities=15% Similarity=0.198 Sum_probs=69.0
Q ss_pred EEEEccCCeEEEEecccccccC--HHHHHhhcCC----CCCCCEEEeCCCCHHHHHHHHHHhhcCccccc-hhhHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACS--SYFQSLFIDH----PSRHPIVILKDVCFSELRTLIEFMYRGEVNVE-YCQLSTLLK 117 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S--~yFr~mf~~~----e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~-~~~v~~Ll~ 117 (287)
|.+. ++|++|..-.--|..+- ..+.+||.+. +....-..+-|-++.-|+.||+|+-.|.+... .-++..+|.
T Consensus 11 vrln-igGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLe 89 (302)
T KOG1665|consen 11 VRLN-IGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLE 89 (302)
T ss_pred heee-cCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHH
Confidence 5566 68999988777776663 4678899874 12223345557789999999999999998764 458999999
Q ss_pred HHhhcCchhHHHHHHH
Q psy5386 118 TAESLKVKGLAEMTQD 133 (287)
Q Consensus 118 aA~~l~i~~L~~~c~~ 133 (287)
.|++|+|-.|++..++
T Consensus 90 eArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 90 EARFFQILSLKDHLED 105 (302)
T ss_pred HhhHHhhHhHHhHHhh
Confidence 9999999999999887
No 27
>KOG2714|consensus
Probab=95.21 E-value=0.064 Score=52.26 Aligned_cols=84 Identities=17% Similarity=0.189 Sum_probs=64.4
Q ss_pred EEEEccCCeEEEEecccccccC--HHHHHhhcCCC---CCCCEEEeCCCCHHHHHHHHHHhhcCccccchhhHHHHHH-H
Q psy5386 45 VTLACSEGHSIRAHKVVLSACS--SYFQSLFIDHP---SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLK-T 118 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S--~yFr~mf~~~e---~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~-a 118 (287)
|.|- |+|+.|..-+.-|+... .+|-+++.+.. ....-..+=|=+|+.|..||+|+-||++.+..-....++. =
T Consensus 13 V~lN-VGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFIDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdE 91 (465)
T KOG2714|consen 13 VKLN-VGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFIDRDPDLFAVILNLLRTGDLDASGVFPERLLHDE 91 (465)
T ss_pred EEEe-cCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEecCCchHHHHHHHHHhcCCCCCccCchhhhhhhh
Confidence 4555 79999999999997765 68888887542 1112223446789999999999999999997665555555 9
Q ss_pred HhhcCchhHHH
Q psy5386 119 AESLKVKGLAE 129 (287)
Q Consensus 119 A~~l~i~~L~~ 129 (287)
|.||++..|..
T Consensus 92 A~fYGl~~llr 102 (465)
T KOG2714|consen 92 AMFYGLTPLLR 102 (465)
T ss_pred hhhcCcHHHHH
Confidence 99999998876
No 28
>KOG2715|consensus
Probab=93.62 E-value=0.32 Score=42.02 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=74.0
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCC------CCCCEEEeCCCCHHHHHHHHHHhhcCccccchhhHHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP------SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKT 118 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e------~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~a 118 (287)
|.+- |+|..|-.-|.-|.--+.-|-..|-..+ ....--.|-|-+|.-|..+|+|+-.|++.++.-.-+.+|.-
T Consensus 23 VRlN-VGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~E 101 (210)
T KOG2715|consen 23 VRLN-VGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEE 101 (210)
T ss_pred EEEe-cCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEeccCcchHHHHHHHHhcchhhhhhhhhhccchh
Confidence 4555 6899999999999998877766665432 11223455577899999999999999999988666779999
Q ss_pred HhhcCchhHHHHHHHHHhcc
Q psy5386 119 AESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 119 A~~l~i~~L~~~c~~~l~~~ 138 (287)
|++|+++.|+.+..+-+...
T Consensus 102 Aefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 102 AEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred hhccCChHHHHHHHHHHHHH
Confidence 99999999999999888744
No 29
>KOG3840|consensus
Probab=88.66 E-value=1 Score=42.43 Aligned_cols=81 Identities=15% Similarity=0.237 Sum_probs=59.9
Q ss_pred cEEEEccCCeEEEEecccccccC-HHHHHhhcCC-----CCCCCEEEeC-CCCHHHHHHHHHHhhcCccccch-hhHHHH
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACS-SYFQSLFIDH-----PSRHPIVILK-DVCFSELRTLIEFMYRGEVNVEY-CQLSTL 115 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S-~yFr~mf~~~-----e~~~~~I~L~-dv~~~~f~~lL~fiYTg~l~i~~-~~v~~L 115 (287)
-++.. +++..|-+-+.+|.+.- .-.-.||.++ .....+.++. +++..+|+.||+|.-+|.+.-.. -.+.+|
T Consensus 97 ~~t~l-vd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpEL 175 (438)
T KOG3840|consen 97 KVCLL-VDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSEL 175 (438)
T ss_pred ceEEE-eeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHH
Confidence 45555 78889999999987663 2344566553 2344567774 59999999999999999887654 378888
Q ss_pred HHHHhhcCch
Q psy5386 116 LKTAESLKVK 125 (287)
Q Consensus 116 l~aA~~l~i~ 125 (287)
-.++|||.|+
T Consensus 176 rEACDYLlip 185 (438)
T KOG3840|consen 176 REACDYLLVP 185 (438)
T ss_pred HhhcceEEee
Confidence 8888888664
No 30
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.44 E-value=0.75 Score=34.33 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=26.8
Q ss_pred ccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 106 NVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 106 ~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.++.+.+.+|+.||++|+|+.|.+.|.+++...
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~ 42 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANM 42 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 346678999999999999999999999998643
No 31
>KOG2723|consensus
Probab=60.06 E-value=42 Score=30.31 Aligned_cols=94 Identities=13% Similarity=0.142 Sum_probs=60.1
Q ss_pred CcccEEEEccCCeEEEEeccc-c-cccCHHHHHhhcCCC----CCCCEEEeCCCCHHHHHHHHHHhhcCccccch--hhH
Q psy5386 41 SLVDVTLACSEGHSIRAHKVV-L-SACSSYFQSLFIDHP----SRHPIVILKDVCFSELRTLIEFMYRGEVNVEY--CQL 112 (287)
Q Consensus 41 ~~~DV~l~~v~g~~f~aHk~V-L-aa~S~yFr~mf~~~e----~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~--~~v 112 (287)
.+.|++-+=++| .++.++.- | .-.-.....||.+.. .......| |=+-..|+.||+|+=|-.+.+.. .++
T Consensus 6 ~~~~~v~lnvGG-~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI-DRDG~lFRyvL~~LRt~~l~lpe~f~e~ 83 (221)
T KOG2723|consen 6 EYPDVVELNVGG-AIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI-DRDGFLFRYVLDYLRTKALLLPEDFAEV 83 (221)
T ss_pred ccCCceeeccCC-eEEEeeccceeechHHHHHhhcCCCCCccccccccEEE-cCCcchHHHHHHHhcccccccchhhhhH
Confidence 466777763555 44444433 4 333445567776521 11112222 33456899999999996666665 578
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 113 STLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 113 ~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
..|..-|++|++..+.....+-..
T Consensus 84 ~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 84 ERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred HHHHHHHHHHccccHHHHHhcccc
Confidence 999999999999988777665544
No 32
>PHA02790 Kelch-like protein; Provisional
Probab=58.50 E-value=16 Score=36.30 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=33.3
Q ss_pred HHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 95 TLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 95 ~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.-.+|+-. .++.+|...++.+|+.|+++.|.+.+.+|+..+
T Consensus 111 ~C~~fL~~---~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~n 151 (480)
T PHA02790 111 TCINFILR---DFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKH 151 (480)
T ss_pred HHHHHHHh---hCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 33345542 678899999999999999999999999998644
No 33
>PHA03098 kelch-like protein; Provisional
Probab=51.82 E-value=40 Score=33.55 Aligned_cols=33 Identities=6% Similarity=-0.037 Sum_probs=29.7
Q ss_pred ccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 106 NVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 106 ~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.++.+|...++.+|+.|++..|++.|.+|+..+
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~n 136 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNN 136 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 467889999999999999999999999998643
No 34
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=45.77 E-value=46 Score=27.07 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=48.3
Q ss_pred ccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeC-CC--CHHHHHHHHHHhhcCccccchhhHHHHHHHH
Q psy5386 43 VDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILK-DV--CFSELRTLIEFMYRGEVNVEYCQLSTLLKTA 119 (287)
Q Consensus 43 ~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~-dv--~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA 119 (287)
-||.|. ++..+.+|--+++.+|+.....=-.=+-....+..| |+ -.+.....|+++|.|. .+..=..++++.+-
T Consensus 14 IdVrl~--~~~~i~V~i~l~ST~sP~l~k~~f~IpY~~~~ii~PFDFNglEe~I~~~l~~mY~~s-~~~efk~EDmve~I 90 (117)
T PF09593_consen 14 IDVRLM--EDMSIFVHIQLFSTRSPALIKKKFIIPYTHEGIIPPFDFNGLEEGIKNTLKIMYKDS-KIEEFKQEDMVEAI 90 (117)
T ss_pred EEEEec--CCCEEEEEEEEEECCChHHheEEEEEeccCCCeECCcccCcHHHHHHHHHHHHhCCC-CcccccHHHHHhhh
Confidence 366664 567999999999999997752111101111122222 22 3578899999999764 23333445666666
Q ss_pred hhcCch
Q psy5386 120 ESLKVK 125 (287)
Q Consensus 120 ~~l~i~ 125 (287)
|.+-++
T Consensus 91 DIlmme 96 (117)
T PF09593_consen 91 DILMME 96 (117)
T ss_pred heeeec
Confidence 666554
No 35
>KOG1778|consensus
Probab=36.51 E-value=25 Score=33.43 Aligned_cols=91 Identities=20% Similarity=0.244 Sum_probs=58.0
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHHHHHHHHHhhcCccc---------------
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSELRTLIEFMYRGEVN--------------- 106 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~--------------- 106 (287)
|+.++-.+...+.+|+.+|+..|+.|..+.... ......+.+..+....+..+.+++|.. ++
T Consensus 27 ~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 27 DVEIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKILGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred chhhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhcceeecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 333433445679999999999999998877654 222334555566667777777777764 21
Q ss_pred --------------------cchhhHHHHHHHHhhcCchhHHHHHHHHH
Q psy5386 107 --------------------VEYCQLSTLLKTAESLKVKGLAEMTQDLS 135 (287)
Q Consensus 107 --------------------i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l 135 (287)
++..++..++..+..|+...|...+-..+
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~~r~~flvl~~~~~~~~~~lr~a~hss~ 154 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFDKRNVFLVLQLAEHCDFSDLRRAKHSSI 154 (319)
T ss_pred hhhhccCccccCCccccchhhhhHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 12234566666777777776666655544
No 36
>KOG4350|consensus
Probab=34.79 E-value=20 Score=35.30 Aligned_cols=73 Identities=15% Similarity=0.127 Sum_probs=45.9
Q ss_pred CHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhc-Ccc------------ccchhhHHHHHHHHhhcCchhHHHHHH
Q psy5386 66 SSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYR-GEV------------NVEYCQLSTLLKTAESLKVKGLAEMTQ 132 (287)
Q Consensus 66 S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYT-g~l------------~i~~~~v~~Ll~aA~~l~i~~L~~~c~ 132 (287)
+.-|+.++.-- ....+.|.++..+.+-.+|..... |-+ .+..+|+-.++.+|.+|++.+|.+.|.
T Consensus 93 ~eAF~~lLrYi--Ytg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~ 170 (620)
T KOG4350|consen 93 SEAFRALLRYI--YTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCM 170 (620)
T ss_pred HHHHHHHHHHH--hhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHH
Confidence 45566555321 113567777766655444433311 211 234567777889999999999999999
Q ss_pred HHHhccCC
Q psy5386 133 DLSTRSRT 140 (287)
Q Consensus 133 ~~l~~~~~ 140 (287)
.|+-+...
T Consensus 171 mfmDrnA~ 178 (620)
T KOG4350|consen 171 MFMDRNAD 178 (620)
T ss_pred HHHhcCHH
Confidence 99976543
No 37
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=30.76 E-value=59 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 113 STLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 113 ~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
..++..|..|++..|.+.|.+|+..+
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~n 27 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAKN 27 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHHH
Confidence 46789999999999999999999744
No 38
>KOG3863|consensus
Probab=24.22 E-value=12 Score=38.33 Aligned_cols=40 Identities=33% Similarity=0.522 Sum_probs=33.6
Q ss_pred HHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC
Q psy5386 31 GVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH 76 (287)
Q Consensus 31 ~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~ 76 (287)
..++.+|.....||+++. +.++.|.+|+ ++.||-.-..+.
T Consensus 3 ~~~~~qr~~~~~~~~~~~-~~~~~f~~~~-----~~e~~~~~~~G~ 42 (604)
T KOG3863|consen 3 LSLNDQRKKDVLCDVTAF-VERQGFRAHR-----CSEYFTSRIVGQ 42 (604)
T ss_pred ccccccccccccchhHHH-Hhccccccee-----ccchhhhhhccc
Confidence 346778899999999997 7999999999 889998766653
No 39
>KOG3806|consensus
Probab=23.12 E-value=2.3e+02 Score=24.72 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEcc-CCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhcCc
Q psy5386 26 QNNLLGVFSQLLHDESLVDVTLACS-EGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGE 104 (287)
Q Consensus 26 ~~~ll~~L~~l~~~~~~~DV~l~~v-~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYTg~ 104 (287)
+..|.+.|-+++.+....|++-=.. +|-+|..-..=..|| ++ +... .=+++..+-+..-|+|-|...
T Consensus 68 ~iqLwqFLleLl~d~~~~~~I~Wtg~~g~EFkl~dp~eVAr------lW-G~rK-----~kp~MNYdKLSRaLRyyY~kn 135 (177)
T KOG3806|consen 68 QIQLWQFLLELLQDESNAHIIAWTGKDGLEFKLVDPDEVAR------LW-GARK-----NKPNMNYDKLSRALRYYYDKN 135 (177)
T ss_pred hhhHHHHHHHHHhCcccCCeeEEeCCCCceEEecCHHHHHH------HH-hhhh-----CCCCCCHHHHHHHHHHHHhcC
Confidence 7788999999999999999877644 344887644433333 22 2111 226899999999999999866
Q ss_pred c
Q psy5386 105 V 105 (287)
Q Consensus 105 l 105 (287)
+
T Consensus 136 i 136 (177)
T KOG3806|consen 136 I 136 (177)
T ss_pred c
Confidence 4
No 40
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=20.68 E-value=94 Score=22.69 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=21.5
Q ss_pred HHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 114 TLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 114 ~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.++.+|+.|+...|.+.|.+|+..+
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n 27 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN 27 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH
Confidence 4677899999999999999998743
Done!