Query psy5386
Match_columns 287
No_of_seqs 218 out of 1512
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 01:15:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5386.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5386hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z8h_A Transcription regulator 100.0 5.5E-28 1.9E-32 198.8 13.0 126 15-141 9-135 (138)
2 1r29_A B-cell lymphoma 6 prote 99.9 1E-27 3.5E-32 194.0 13.1 124 14-138 1-126 (127)
3 3b84_A Zinc finger and BTB dom 99.9 2.9E-28 9.8E-33 195.7 9.0 117 19-138 1-117 (119)
4 2if5_A Zinc finger and BTB dom 99.9 1.4E-27 4.7E-32 191.3 12.7 116 19-135 2-119 (120)
5 1buo_A POZ domain, protein (pr 99.9 2.5E-27 8.4E-32 190.6 12.0 118 16-137 2-119 (121)
6 3ohu_A Transcription regulator 99.9 5.8E-28 2E-32 195.0 6.9 121 14-135 4-125 (125)
7 3ga1_A Nucleus accumbens-assoc 99.9 1.3E-27 4.3E-32 194.3 8.7 121 15-138 6-127 (129)
8 2ihc_A Transcription regulator 99.9 7E-28 2.4E-32 194.7 6.9 120 16-136 3-123 (124)
9 2vpk_A Myoneurin; transcriptio 99.9 5.6E-27 1.9E-31 186.8 11.1 112 22-136 2-115 (116)
10 2ppi_A Gigaxonin; BTB domain, 99.9 3.2E-27 1.1E-31 196.1 9.9 121 15-136 20-144 (144)
11 2yy9_A Zinc finger and BTB dom 99.9 3.2E-27 1.1E-31 193.9 9.1 116 21-139 4-119 (135)
12 2q81_A MIZ-1 protein; BTB/POZ 99.9 2.3E-27 7.8E-32 190.4 7.9 116 17-136 2-117 (119)
13 3fkc_A Transcriptional regulat 99.9 8.6E-26 2.9E-30 180.8 10.3 113 13-129 2-115 (116)
14 3m5b_A Zinc finger and BTB dom 99.9 6.9E-25 2.4E-29 176.7 8.5 113 15-137 5-117 (119)
15 3hve_A Gigaxonin; ubiquitin, c 99.9 1.5E-24 5.2E-29 194.9 11.0 126 18-144 7-136 (256)
16 2vkp_A BTB/POZ domain-containi 99.9 2.9E-24 9.9E-29 168.7 9.2 101 36-138 2-108 (109)
17 3i3n_A Kelch-like protein 11; 99.9 4E-24 1.4E-28 194.6 10.2 127 16-143 6-143 (279)
18 3htm_A Speckle-type POZ protei 99.9 5.9E-24 2E-28 179.2 10.5 123 20-143 12-136 (172)
19 4eoz_A Speckle-type POZ protei 99.9 3E-24 1E-28 176.2 6.2 118 24-142 7-126 (145)
20 3hqi_A Speckle-type POZ protei 99.9 3E-21 1E-25 177.9 12.8 116 26-142 158-275 (312)
21 2ast_A S-phase kinase-associat 99.6 1E-14 3.5E-19 122.9 9.5 93 45-138 3-125 (159)
22 4ajy_C Transcription elongatio 99.4 8.6E-13 3E-17 102.2 8.9 79 45-124 4-97 (97)
23 1fs1_B SKP1, cyclin A/CDK2-ass 99.4 1.5E-12 5.1E-17 107.6 9.7 91 45-138 4-120 (141)
24 2p1m_A SKP1-like protein 1A; F 99.2 2.6E-12 8.9E-17 108.3 1.9 93 45-139 6-125 (160)
25 3v7d_A Suppressor of kinetocho 98.9 1E-08 3.5E-13 87.0 10.3 92 44-136 8-130 (169)
26 2fnj_C Transcription elongatio 98.8 8.9E-09 3E-13 79.5 7.3 79 45-124 3-96 (96)
27 1hv2_A Elongin C, ELC1; protei 98.8 1.4E-08 4.8E-13 78.8 8.5 80 44-124 5-99 (99)
28 1vcb_B Protein (elongin C); tu 98.4 5.4E-07 1.8E-11 71.4 7.1 80 44-124 18-112 (112)
29 3drz_A BTB/POZ domain-containi 98.4 1.8E-06 6.3E-11 67.6 10.1 90 45-136 8-105 (107)
30 3drx_A BTB/POZ domain-containi 97.6 0.00028 9.5E-09 61.3 8.9 96 40-136 8-111 (202)
31 1s1g_A Potassium voltage-gated 95.8 0.0094 3.2E-07 47.7 4.6 83 45-132 15-105 (124)
32 3kvt_A Potassium channel prote 95.7 0.01 3.4E-07 46.9 4.2 81 45-127 7-92 (115)
33 1t1d_A Protein (potassium chan 95.2 0.016 5.4E-07 44.6 3.7 82 45-128 3-90 (100)
34 2nz0_B Potassium voltage-gated 94.5 0.048 1.6E-06 44.4 5.1 78 45-127 37-121 (140)
35 1nn7_A Potassium channel KV4.2 94.0 0.015 5E-07 45.1 1.0 83 45-132 2-92 (105)
36 2eqx_A Kelch repeat and BTB do 87.8 0.22 7.4E-06 38.0 1.9 47 103-158 4-50 (105)
37 2r9r_B Paddle chimera voltage 82.0 1.4 4.9E-05 42.8 5.1 87 41-128 49-141 (514)
38 3htm_A Speckle-type POZ protei 64.6 11 0.00037 30.0 5.5 33 106-138 131-163 (172)
39 3hqi_A Speckle-type POZ protei 49.6 13 0.00046 32.7 3.9 33 106-138 271-303 (312)
40 3i3n_A Kelch-like protein 11; 41.3 23 0.00079 30.7 4.1 33 106-138 138-170 (279)
41 3hve_A Gigaxonin; ubiquitin, c 34.8 39 0.0013 28.7 4.4 32 106-137 130-161 (256)
No 1
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=99.95 E-value=5.5e-28 Score=198.80 Aligned_cols=126 Identities=26% Similarity=0.389 Sum_probs=118.4
Q ss_pred CcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeC-CCCHHHH
Q psy5386 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILK-DVCFSEL 93 (287)
Q Consensus 15 ~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~-dv~~~~f 93 (287)
.+.+.+.++.|+..+++.|+++|+++.+|||+|+ ++|+.|+|||+||+++|+||++||.++......|.++ ++++++|
T Consensus 9 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~ 87 (138)
T 2z8h_A 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVL-VEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGF 87 (138)
T ss_dssp TCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHH
T ss_pred CCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEE-ECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHH
Confidence 4678899999999999999999999999999998 7999999999999999999999999876666789995 8999999
Q ss_pred HHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCC
Q psy5386 94 RTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTA 141 (287)
Q Consensus 94 ~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~ 141 (287)
+.+|+|||||++.++.+++.+|+.+|++|+|+.|++.|++||......
T Consensus 88 ~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 88 EPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp HHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred HHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999876554
No 2
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=99.95 E-value=1e-27 Score=194.00 Aligned_cols=124 Identities=25% Similarity=0.441 Sum_probs=113.8
Q ss_pred CCcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCC-CCCEEEe-CCCCHH
Q psy5386 14 GSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPS-RHPIVIL-KDVCFS 91 (287)
Q Consensus 14 ~~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~-~~~~I~L-~dv~~~ 91 (287)
|...+.+.+++|...+++.|+++|.++.+|||+|+ ++|+.|+|||.||+++|+||++||.++.. ....|.| ++++++
T Consensus 1 g~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~ 79 (127)
T 1r29_A 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVIV-VSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPE 79 (127)
T ss_dssp ----CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHH
T ss_pred CCCCccccchhHHHHHHHHHHHHHhcCCCCCEEEE-ECCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHH
Confidence 34567789999999999999999999999999998 79999999999999999999999998643 5789999 999999
Q ss_pred HHHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 92 ELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 92 ~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
+|+.+|+|||||++.++.+++.+|+.+|++|+++.|++.|+++|.++
T Consensus 80 ~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~ 126 (127)
T 1r29_A 80 GFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKAS 126 (127)
T ss_dssp HHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999753
No 3
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=99.95 E-value=2.9e-28 Score=195.65 Aligned_cols=117 Identities=25% Similarity=0.395 Sum_probs=108.7
Q ss_pred eeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHH
Q psy5386 19 CLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIE 98 (287)
Q Consensus 19 ~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~ 98 (287)
++.|++|+..+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++. ...|.|+++++++|+.+|+
T Consensus 1 s~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~~f~~~~--~~~i~l~~~~~~~f~~ll~ 77 (119)
T 3b84_A 1 SMSFVQHSVRVLQELNKQREKGQYCDATLD-VGGLVFKAHWSVLACCSHFFQSLYGDGS--GGSVVLPAGFAEIFGLLLD 77 (119)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHTTTT--CCCEEECGGGHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHHHHhcCCCcceEEE-ECCEEEEeeHHHHhhcCHHHHHHHCCCC--CCeEEeCCCCHHHHHHHHH
Confidence 357899999999999999999999999998 7999999999999999999999998865 5689999999999999999
Q ss_pred HhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 99 FMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 99 fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
|||||++.++.+++.+|+.+|++|+++.|++.|++||.++
T Consensus 78 ~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~ 117 (119)
T 3b84_A 78 FFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT 117 (119)
T ss_dssp HHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred HHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999998754
No 4
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=99.95 E-value=1.4e-27 Score=191.28 Aligned_cols=116 Identities=24% Similarity=0.466 Sum_probs=109.2
Q ss_pred eeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHHHHHH
Q psy5386 19 CLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSELRTL 96 (287)
Q Consensus 19 ~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~f~~l 96 (287)
.+.|++|++.+++.|+++|+++.+|||+|. ++|+.|+|||.||+++|+||++||.++ +.....|.++++++++|+.+
T Consensus 2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~l 80 (120)
T 2if5_A 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVIL-VEGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTAL 80 (120)
T ss_dssp CCCCTTHHHHHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHhcCCCCCeEEE-ECCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHH
Confidence 568999999999999999999999999998 799999999999999999999999986 45678999999999999999
Q ss_pred HHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHH
Q psy5386 97 IEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLS 135 (287)
Q Consensus 97 L~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l 135 (287)
|+|+|||++.++.+++.+++.+|++|+|+.|++.|+++|
T Consensus 81 l~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 81 MDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp HHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999997
No 5
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=99.95 E-value=2.5e-27 Score=190.58 Aligned_cols=118 Identities=23% Similarity=0.313 Sum_probs=112.0
Q ss_pred cceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHH
Q psy5386 16 EHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRT 95 (287)
Q Consensus 16 e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~ 95 (287)
+.+.+.+++|+..+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++ ...|.++++++++|+.
T Consensus 2 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~~f~~~---~~~i~l~~~~~~~f~~ 77 (121)
T 1buo_A 2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIM-VDSQEFHAHRTVLACTSKMFEILFHRN---SQHYTLDFLSPKTFQQ 77 (121)
T ss_dssp CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEE-ESSCEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHHHHH
T ss_pred CceeccCcchHHHHHHHHHHHHhcCCCCCEEEE-ECCEEEehhHHHHhhcCHHHHHHHcCC---CcEEEeCCCCHHHHHH
Confidence 357789999999999999999999999999998 799999999999999999999999874 5689999999999999
Q ss_pred HHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhc
Q psy5386 96 LIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTR 137 (287)
Q Consensus 96 lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~ 137 (287)
+|+|+|||++.++.+++.+++.+|++|+++.|++.|+++|.+
T Consensus 78 ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~ 119 (121)
T 1buo_A 78 ILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET 119 (121)
T ss_dssp HHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999974
No 6
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=99.94 E-value=5.8e-28 Score=194.97 Aligned_cols=121 Identities=26% Similarity=0.425 Sum_probs=114.2
Q ss_pred CCcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCC-CCHHH
Q psy5386 14 GSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKD-VCFSE 92 (287)
Q Consensus 14 ~~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~d-v~~~~ 92 (287)
+...+.+.+++|+..+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.+.......|.+++ +++++
T Consensus 4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~ 82 (125)
T 3ohu_A 4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLI-VERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARG 82 (125)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHH
T ss_pred CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEE-ECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHH
Confidence 45678899999999999999999999999999998 79999999999999999999999998776678999998 99999
Q ss_pred HHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHH
Q psy5386 93 LRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLS 135 (287)
Q Consensus 93 f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l 135 (287)
|+.+|+|||||++.++.+++.+|+.+|++|+|+.|++.|++||
T Consensus 83 f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L 125 (125)
T 3ohu_A 83 FGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125 (125)
T ss_dssp HHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred HHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998764
No 7
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.3e-27 Score=194.31 Aligned_cols=121 Identities=25% Similarity=0.426 Sum_probs=108.0
Q ss_pred CcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeC-CCCHHHH
Q psy5386 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILK-DVCFSEL 93 (287)
Q Consensus 15 ~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~-dv~~~~f 93 (287)
.+.++++|++|...+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++ ...+|.|+ ++++++|
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~vLaa~S~~F~~~f~~~--~~~~i~l~~~~~~~~f 82 (129)
T 3ga1_A 6 AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVV-VKGHAFKAHRAVLAASSSYFRDLFNNS--RSAVVELPAAVQPQSF 82 (129)
T ss_dssp -CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHHHHHBHHHHHHHHHC--CCSEEECCTTCCHHHH
T ss_pred CceEEeecCcHHHHHHHHHHHHHhcCCCcceEEE-ECCEEEEehHHHHHHcCHHHHHHHcCC--CCCEEEECCCCCHHHH
Confidence 4588999999999999999999999999999998 799999999999999999999999876 66789997 8999999
Q ss_pred HHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 94 RTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 94 ~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
+.+|+|||||++.++.+++.+|+.+|++|+|+.|++.|++||.+.
T Consensus 83 ~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~ 127 (129)
T 3ga1_A 83 QQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKV 127 (129)
T ss_dssp HHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC--------
T ss_pred HHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999753
No 8
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=99.94 E-value=7e-28 Score=194.71 Aligned_cols=120 Identities=27% Similarity=0.419 Sum_probs=111.2
Q ss_pred cceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeC-CCCHHHHH
Q psy5386 16 EHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILK-DVCFSELR 94 (287)
Q Consensus 16 e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~-dv~~~~f~ 94 (287)
+.+.++++.|+..+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++......|.++ ++++++|+
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~ 81 (124)
T 2ihc_A 3 SVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIF-VEGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFE 81 (124)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHH
T ss_pred ceeeecCcchHHHHHHHHHHHHhcCCCcCEEEE-ECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHH
Confidence 578899999999999999999999999999998 7999999999999999999999999876666789995 89999999
Q ss_pred HHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 95 TLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 95 ~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
.+|+|||||++.++.+++.+|+.+|++|+++.|++.|++||+
T Consensus 82 ~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~ 123 (124)
T 2ihc_A 82 PLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123 (124)
T ss_dssp HHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred HHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999875
No 9
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.6e-27 Score=186.80 Aligned_cols=112 Identities=23% Similarity=0.379 Sum_probs=106.1
Q ss_pred ccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeC--CCCHHHHHHHHHH
Q psy5386 22 WNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILK--DVCFSELRTLIEF 99 (287)
Q Consensus 22 ~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~--dv~~~~f~~lL~f 99 (287)
+++|+..+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++ ....|.|+ ++++++|+.+|+|
T Consensus 2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vLaa~S~yF~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~ 78 (116)
T 2vpk_A 2 MSHHCEHLLERLNKQREAGFLCDCTIV-IGEFQFKAHRNVLASFSEYFGAIYRST--SENNVFLDQSQVKADGFQKLLEF 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHTTC--CCSCEECCTTTCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCcEEEE-ECCEEEeccHHHHhhcCHHHHHHHcCC--CCCeEEeecCCCCHHHHHHHHHH
Confidence 468999999999999999999999998 799999999999999999999999886 35678887 9999999999999
Q ss_pred hhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 100 MYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 100 iYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
+|||++.++.+++.+++.+|++|+++.|++.|+++|.
T Consensus 79 ~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 79 IYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp HHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999985
No 10
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=99.94 E-value=3.2e-27 Score=196.07 Aligned_cols=121 Identities=17% Similarity=0.350 Sum_probs=110.6
Q ss_pred CcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCC----CCCCEEEeCCCCH
Q psy5386 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP----SRHPIVILKDVCF 90 (287)
Q Consensus 15 ~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e----~~~~~I~L~dv~~ 90 (287)
.+.+.+.+++|...+++.|+++|.++.+|||+|+ ++|+.|+|||+||+++|+||++||.++. .....|.|+++++
T Consensus 20 ~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~ 98 (144)
T 2ppi_A 20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLV-LDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISV 98 (144)
T ss_dssp CCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCH
T ss_pred eeeeeecCcchHHHHHHHHHHHHhcCCCcceEEE-ECCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCH
Confidence 4567889999999999999999999999999998 7999999999999999999999998752 4678999999999
Q ss_pred HHHHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 91 SELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 91 ~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
++|+.+|+|||||++.++.+++.+|+.+|++|+|+.|++.|++||+
T Consensus 99 ~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~ 144 (144)
T 2ppi_A 99 MVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144 (144)
T ss_dssp HHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999873
No 11
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=99.94 E-value=3.2e-27 Score=193.85 Aligned_cols=116 Identities=23% Similarity=0.363 Sum_probs=103.7
Q ss_pred eccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHh
Q psy5386 21 RWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFM 100 (287)
Q Consensus 21 ~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fi 100 (287)
.+++|...+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++. ...|.|+++++++|+.+|+||
T Consensus 4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~mf~~~~--~~~i~l~~~~~~~f~~lL~fi 80 (135)
T 2yy9_A 4 GSSGHSVRVLQELNKQREKGQYCDATLD-VGGLVFKAHWSVLACCSHFFQRIYGDGT--GGSVVLPAGFAEIFGLLLDFF 80 (135)
T ss_dssp ---CHHHHHHHHHHHHHHTTTTCCEEEE-ETTEEEEECHHHHHHHCHHHHHTCC------CCEEECGGGHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCcceEEE-ECCEEEehHHHHHHHhCHHHHHHHcCCC--CCeEEeCCCCHHHHHHHHHHH
Confidence 5679999999999999999999999998 7999999999999999999999998765 567999999999999999999
Q ss_pred hcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccC
Q psy5386 101 YRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSR 139 (287)
Q Consensus 101 YTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~ 139 (287)
|||++.++.+++.+|+.+|++|+|+.|++.|++||....
T Consensus 81 Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l 119 (135)
T 2yy9_A 81 YTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTS 119 (135)
T ss_dssp HHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC---
T ss_pred hCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999997554
No 12
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=99.94 E-value=2.3e-27 Score=190.40 Aligned_cols=116 Identities=27% Similarity=0.445 Sum_probs=107.7
Q ss_pred ceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHH
Q psy5386 17 HYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTL 96 (287)
Q Consensus 17 ~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~l 96 (287)
...+.+++|+..+++.|+++|+++.+|||+|+ ++|+.|+|||.||+++|+||++||.++ ..+|.++++++++|+.+
T Consensus 2 p~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~aHk~vLaa~S~yF~~~f~~~---~~~i~l~~~~~~~f~~l 77 (119)
T 2q81_A 2 PLGSDFPQHSQHVLEQLNQQRQLGLLCDCTFV-VDGVHFKAHKAVLAACSEYFKMLFVDQ---KDVVHLDISNAAGLGQV 77 (119)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHHHC---CSGGGGGGCCHHHHHHH
T ss_pred CcccccchHHHHHHHHHHHHHhcCCCcceEEE-ECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHHHHHH
Confidence 35667899999999999999999999999998 799999999999999999999999873 45788899999999999
Q ss_pred HHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 97 IEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 97 L~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
|+|+|||++.++.+++.+|+.+|++|+|+.|++.|++|+.
T Consensus 78 l~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 78 LEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp HHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999986
No 13
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=99.93 E-value=8.6e-26 Score=180.82 Aligned_cols=113 Identities=26% Similarity=0.325 Sum_probs=105.7
Q ss_pred CCCcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHH
Q psy5386 13 MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSE 92 (287)
Q Consensus 13 ~~~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~ 92 (287)
.+++.+.+.+++|+..+++.|+++|.++.+|||+|. ++|+.|+|||.||+++|+||++||.++ ...|.++++++++
T Consensus 2 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~~F~~~f~~~---~~~i~l~~~~~~~ 77 (116)
T 3fkc_A 2 ESRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVI-VEDRKFRAHKNILSASSTYFHQLFSVA---GQVVELSFIRAEI 77 (116)
T ss_dssp --CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEE-ETTEEEEECHHHHHHHCHHHHHHTTSC---CSEEEECSSCHHH
T ss_pred CcCceeeecCccHHHHHHHHHHHHHhcCCceeEEEE-ECCEEEehhHHHHHHcCHHHHHHHcCC---CCEEEeCCCCHHH
Confidence 356788899999999999999999999999999998 799999999999999999999999875 5689999999999
Q ss_pred HHHHHHHhhcCcc-ccchhhHHHHHHHHhhcCchhHHH
Q psy5386 93 LRTLIEFMYRGEV-NVEYCQLSTLLKTAESLKVKGLAE 129 (287)
Q Consensus 93 f~~lL~fiYTg~l-~i~~~~v~~Ll~aA~~l~i~~L~~ 129 (287)
|+.+|+|+|||++ .++.+++.+++.+|++|+|+.|++
T Consensus 78 f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 78 FAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp HHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence 9999999999999 799999999999999999999975
No 14
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=99.91 E-value=6.9e-25 Score=176.72 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=101.4
Q ss_pred CcceeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHH
Q psy5386 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELR 94 (287)
Q Consensus 15 ~e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~ 94 (287)
........+.|+..+++.|+ |.++.+|||+|+ ++|+.|+|||+|||++|+||++ ....|.++++++++|+
T Consensus 5 ~~p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~-v~~~~f~aHk~vLaa~S~yF~~-------~~~~i~l~~v~~~~f~ 74 (119)
T 3m5b_A 5 LPPIRLPSPYGSDRLVQLAA--RLRPALCDTLIT-VGSQEFPAHSLVLAGVSQQLGR-------RGQWALGEGISPSTFA 74 (119)
T ss_dssp --CEEECCTTTTCHHHHHHH--HHTTTTCCEEEE-ETTEEEEECHHHHHTTCGGGCC-------CEEEECCSSCCHHHHH
T ss_pred CCCCCCCCCcchHHHHHHHH--HhcCCCcceEEE-ECCEEEeeEHHHHHHcCHHHhc-------CCCEEEeCCCCHHHHH
Confidence 34566777889999999996 778999999998 7999999999999999999984 3468999999999999
Q ss_pred HHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhc
Q psy5386 95 TLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTR 137 (287)
Q Consensus 95 ~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~ 137 (287)
.+|+|||||++.++.+++.+|+.+|++|+|+.|++.|++++..
T Consensus 75 ~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 75 QLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp HHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999864
No 15
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=99.91 E-value=1.5e-24 Score=194.87 Aligned_cols=126 Identities=16% Similarity=0.309 Sum_probs=107.9
Q ss_pred eeeeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC----CCCCCEEEeCCCCHHHH
Q psy5386 18 YCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH----PSRHPIVILKDVCFSEL 93 (287)
Q Consensus 18 ~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~----e~~~~~I~L~dv~~~~f 93 (287)
..+.++.|+..+++.|+++|.++.+|||+|+ ++|+.|+|||+||+++|+||++||.++ +.....|.++++++++|
T Consensus 7 ~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f 85 (256)
T 3hve_A 7 SAVSDPQHAARLLRALSSFREESRFCDAHLV-LDGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVM 85 (256)
T ss_dssp ---CCTTTHHHHHHHHHTCCC--CCCCEEEE-ETTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHH
T ss_pred CccCChHHHHHHHHHHHHHHhcCCCcceEEE-ECCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHH
Confidence 6788999999999999999999999999998 799999999999999999999999875 34668999999999999
Q ss_pred HHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCCC
Q psy5386 94 RTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPS 144 (287)
Q Consensus 94 ~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~~ 144 (287)
+.+|+|+|||++.++.+++.+++.+|++|+++.|++.|.++|.......+.
T Consensus 86 ~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n~ 136 (256)
T 3hve_A 86 REILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENC 136 (256)
T ss_dssp HHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSSTT
T ss_pred HHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhhH
Confidence 999999999999999999999999999999999999999999877665443
No 16
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=99.90 E-value=2.9e-24 Score=168.70 Aligned_cols=101 Identities=25% Similarity=0.373 Sum_probs=91.8
Q ss_pred HHhCCCcccEEEEccCC----eEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHHHHHHHHHhhcCccccch
Q psy5386 36 LLHDESLVDVTLACSEG----HSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSELRTLIEFMYRGEVNVEY 109 (287)
Q Consensus 36 l~~~~~~~DV~l~~v~g----~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~ 109 (287)
+++++.+|||+|+ +++ +.|+|||.||+++|+||++||.++ ++. ..|.++++++++|+.+|+|+|||++.++.
T Consensus 2 l~~~~~~~Dv~l~-v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~ 79 (109)
T 2vkp_A 2 MFNNELMADVHFV-VGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEA 79 (109)
T ss_dssp CTTCCTTCCEEEE-ESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCT
T ss_pred cccCCCcccEEEE-ECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCH
Confidence 6789999999998 566 899999999999999999999986 344 89999999999999999999999999999
Q ss_pred hhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 110 CQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 110 ~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
+++.+++.+|++|+++.|++.|+++|.+.
T Consensus 80 ~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 80 DTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 99999999999999999999999999753
No 17
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=99.90 E-value=4e-24 Score=194.61 Aligned_cols=127 Identities=23% Similarity=0.331 Sum_probs=112.7
Q ss_pred cceeeeccccHHHHHHHHHHHHhCCCcccEEEEccC---CeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeC----
Q psy5386 16 EHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSE---GHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILK---- 86 (287)
Q Consensus 16 e~~~l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~---g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~---- 86 (287)
+.+.+.+++|+..+++.|+++|+++.+|||+|+ ++ |+.|+|||+||+++|+||++||.++ ++....|.|+
T Consensus 6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~-v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~ 84 (279)
T 3i3n_A 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLC-FGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSS 84 (279)
T ss_dssp CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEE-CC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSS
T ss_pred cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEE-EcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccc
Confidence 357788999999999999999999999999998 66 8999999999999999999999986 5667899998
Q ss_pred --CCCHHHHHHHHHHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCC
Q psy5386 87 --DVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPP 143 (287)
Q Consensus 87 --dv~~~~f~~lL~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~ 143 (287)
++++++|+.+|+|+|||++.++.+++.+|+.+|++|+++.|++.|.++|.......+
T Consensus 85 ~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n 143 (279)
T 3i3n_A 85 EPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSN 143 (279)
T ss_dssp TTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTT
T ss_pred cCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcch
Confidence 899999999999999999999999999999999999999999999999987665543
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=99.90 E-value=5.9e-24 Score=179.21 Aligned_cols=123 Identities=21% Similarity=0.280 Sum_probs=112.4
Q ss_pred eeccccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHHHHHHH
Q psy5386 20 LRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSELRTLI 97 (287)
Q Consensus 20 l~~~~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~f~~lL 97 (287)
-.++.+.+.+++.|+++++++.+|||+|+ ++|+.|+|||.||+++|+||++||.++ +.....|.++++++++|+.+|
T Consensus 12 ~~~~~p~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l 90 (172)
T 3htm_A 12 NMVKVPECRLADELGGLWENSRFTDCCLC-VAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMM 90 (172)
T ss_dssp CCSCCCCCCHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHhCCCCcceEEE-ECCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHH
Confidence 34556778899999999999999999998 799999999999999999999999985 455689999999999999999
Q ss_pred HHhhcCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCC
Q psy5386 98 EFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPP 143 (287)
Q Consensus 98 ~fiYTg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~ 143 (287)
+|+|||++.++.+++.+|+.+|++|+++.|++.|++++.......+
T Consensus 91 ~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n 136 (172)
T 3htm_A 91 CFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN 136 (172)
T ss_dssp HHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTT
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999997655543
No 19
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=99.89 E-value=3e-24 Score=176.17 Aligned_cols=118 Identities=22% Similarity=0.307 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCCC--CCCCEEEeCCCCHHHHHHHHHHhh
Q psy5386 24 NHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP--SRHPIVILKDVCFSELRTLIEFMY 101 (287)
Q Consensus 24 ~h~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e--~~~~~I~L~dv~~~~f~~lL~fiY 101 (287)
-..+.+++.|+++++++.+|||+|+ ++|+.|+|||.||+++|+||++||.++. .....|.++++++++|+.+|+|+|
T Consensus 7 ~p~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y 85 (145)
T 4eoz_A 7 VPECRLADELGGLWENSRFTDCCLC-VAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY 85 (145)
T ss_dssp CCCCCHHHHHHHHHHHTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCCcceEEE-ECCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhc
Confidence 3456789999999999999999998 7999999999999999999999999863 445799999999999999999999
Q ss_pred cCccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCC
Q psy5386 102 RGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAP 142 (287)
Q Consensus 102 Tg~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~ 142 (287)
||++.++.+++.+++.+|++|+++.|++.|++++.......
T Consensus 86 ~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~ 126 (145)
T 4eoz_A 86 TGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 126 (145)
T ss_dssp HSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC--------
T ss_pred cCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999999999999999998665443
No 20
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=99.85 E-value=3e-21 Score=177.89 Aligned_cols=116 Identities=22% Similarity=0.328 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHhCCCcccEEEEccCCeEEEEecccccccCHHHHHhhcCC--CCCCCEEEeCCCCHHHHHHHHHHhhcC
Q psy5386 26 QNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH--PSRHPIVILKDVCFSELRTLIEFMYRG 103 (287)
Q Consensus 26 ~~~ll~~L~~l~~~~~~~DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~--e~~~~~I~L~dv~~~~f~~lL~fiYTg 103 (287)
.+.|.+.|++++.++.+|||+|+ ++|+.|+|||.|||++|+||++||.++ +....+|.|+++++++|+.+|+|+|||
T Consensus 158 ~~~l~~~l~~l~~~~~~~Dv~l~-v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~ 236 (312)
T 3hqi_A 158 ECRLADELGGLWENSRFTDCCLC-VAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTG 236 (312)
T ss_dssp CCCHHHHHHHHHHTTCSCCEEEE-ETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHS
T ss_pred CchHHHHHHHHHhCCCCCceEEE-ECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCC
Confidence 45788999999999999999998 799999999999999999999999885 566789999999999999999999999
Q ss_pred ccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCC
Q psy5386 104 EVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAP 142 (287)
Q Consensus 104 ~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~ 142 (287)
++.+..+++.+|+.+|++|+++.|++.|+++|.......
T Consensus 237 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~ 275 (312)
T 3hqi_A 237 KAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVE 275 (312)
T ss_dssp CCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred CCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHH
Confidence 999999999999999999999999999999998665443
No 21
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.56 E-value=1e-14 Score=122.88 Aligned_cols=93 Identities=20% Similarity=0.278 Sum_probs=82.0
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcC-C---CCCCCEEEeCCCCHHHHHHHHHHhhcCc----------------
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFID-H---PSRHPIVILKDVCFSELRTLIEFMYRGE---------------- 104 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~-~---e~~~~~I~L~dv~~~~f~~lL~fiYTg~---------------- 104 (287)
|+|++.||+.|.+||.| |+.|.||+.||.+ + +.....|.|++|+..+|+.|++|+|++.
T Consensus 3 v~L~ssDg~~f~v~~~v-A~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~ 81 (159)
T 2ast_A 3 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 81 (159)
T ss_dssp EEEECTTSCEEEEEHHH-HHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC-----------C
T ss_pred EEEEcCCCCEEEeCHHH-HHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCCCcccccccccch
Confidence 78887799999999999 8999999999987 3 4445689999999999999999999988
Q ss_pred ----------cccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 105 ----------VNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 105 ----------l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
+.++.+++.+|+.||++|+|+.|.++|++++...
T Consensus 82 ~~i~~wD~~F~~id~~~l~eLl~AAnyL~I~~Lld~~c~~va~~ 125 (159)
T 2ast_A 82 DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 125 (159)
T ss_dssp CCCCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999643
No 22
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.40 E-value=8.6e-13 Score=102.23 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=68.7
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCC----CCCCCEEEeCCCCHHHHHHHHHHhh-----c---Cccc---cch
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDH----PSRHPIVILKDVCFSELRTLIEFMY-----R---GEVN---VEY 109 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~----e~~~~~I~L~dv~~~~f~~lL~fiY-----T---g~l~---i~~ 109 (287)
|+|++.||+.|.+||.| |+.|+||++||.+. +.....|.|++|++.+++.+++|+| + +++. ++.
T Consensus 4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~ 82 (97)
T 4ajy_C 4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 82 (97)
T ss_dssp EEEECTTCCEEEEEHHH-HTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCG
T ss_pred EEEEecCCcEEEecHHH-HHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCH
Confidence 67887899999999999 99999999999862 3456789999999999999999999 5 6777 899
Q ss_pred hhHHHHHHHHhhcCc
Q psy5386 110 CQLSTLLKTAESLKV 124 (287)
Q Consensus 110 ~~v~~Ll~aA~~l~i 124 (287)
+++.+|+.||++|++
T Consensus 83 ~~l~eLl~AAnyL~~ 97 (97)
T 4ajy_C 83 EIALELLMAANFLDC 97 (97)
T ss_dssp GGHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999974
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.38 E-value=1.5e-12 Score=107.63 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=82.1
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhcCc--------------------
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGE-------------------- 104 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYTg~-------------------- 104 (287)
|+|++.||+.|.+|+.+ |..|.||+.||.... ...|.|++|+..+++.+++|+|...
T Consensus 4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~ 80 (141)
T 1fs1_B 4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIP 80 (141)
T ss_dssp EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------
T ss_pred EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhh
Confidence 78887799999999998 899999999998632 4579999999999999999999765
Q ss_pred ------cccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 105 ------VNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 105 ------l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
+.++.+++.+|+.||++|+|+.|.++|++++...
T Consensus 81 ~wD~~F~~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~ 120 (141)
T 1fs1_B 81 VWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANM 120 (141)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999743
No 24
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.21 E-value=2.6e-12 Score=108.34 Aligned_cols=93 Identities=23% Similarity=0.255 Sum_probs=51.6
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCCCCCCEEEeCCCCHHHHHHHHHHhhcCc--------------------
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGE-------------------- 104 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e~~~~~I~L~dv~~~~f~~lL~fiYTg~-------------------- 104 (287)
|+|++.||+.|.+|+.+ |..|.||+.||.... ....|.|++|+..+|+.+++|||...
T Consensus 6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~~-~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i 83 (160)
T 2p1m_A 6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDDC-VDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDL 83 (160)
T ss_dssp --CCC---------CHH-HHTCTTTC-------------CCTTSCHHHHHHHHHC-------------------------
T ss_pred EEEEcCCCCEEEECHHH-HHHhHHHHHHHHccC-CCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchh
Confidence 67776799999999999 899999999998643 33579999999999999999999875
Q ss_pred -------cccchhhHHHHHHHHhhcCchhHHHHHHHHHhccC
Q psy5386 105 -------VNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSR 139 (287)
Q Consensus 105 -------l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~ 139 (287)
+.++.+++.+|+.||++|+|+.|.++|++++....
T Consensus 84 ~~wD~~Fl~vd~~~l~eLi~AAnyL~I~~Lldl~c~~vA~~i 125 (160)
T 2p1m_A 84 KAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMI 125 (160)
T ss_dssp -----------------CHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999997554
No 25
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=98.87 E-value=1e-08 Score=87.04 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=78.0
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCCC------CCCCEEEeCCCCHHHHHHHHHHhhcCc-------------
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP------SRHPIVILKDVCFSELRTLIEFMYRGE------------- 104 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e------~~~~~I~L~dv~~~~f~~lL~fiYTg~------------- 104 (287)
-|+|++.||+.|.+++.+ |..|.+++.|+.... .....|.|++|+..+|+.|++|||.-.
T Consensus 8 ~i~L~SsDG~~F~V~~~v-A~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~ 86 (169)
T 3v7d_A 8 NVVLVSGEGERFTVDKKI-AERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSR 86 (169)
T ss_dssp EEEEECTTCCEEEEEHHH-HTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC-------
T ss_pred eEEEEeCCCCEEEecHHH-HHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCccccccccc
Confidence 588888899999999998 788999999998632 223689999999999999999997532
Q ss_pred ------------cccchhhHHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 105 ------------VNVEYCQLSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 105 ------------l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
+.++.+.+.+|+.||+||+|+.|.++|++.+.
T Consensus 87 ~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~vA 130 (169)
T 3v7d_A 87 KSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVA 130 (169)
T ss_dssp -CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 34677889999999999999999999999985
No 26
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=98.81 E-value=8.9e-09 Score=79.49 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=66.4
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCC----CCCCCEEEeCCCCHHHHHHHHHHhhcCc-----------cccch
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDH----PSRHPIVILKDVCFSELRTLIEFMYRGE-----------VNVEY 109 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~----e~~~~~I~L~dv~~~~f~~lL~fiYTg~-----------l~i~~ 109 (287)
|+|++.||+.|.+++.+ |..|.+++.|+... +.....|.|++|+..+++.+++|||.-. ..++.
T Consensus 3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~ 81 (96)
T 2fnj_C 3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAP 81 (96)
T ss_dssp EEEECTTSCEEEEEHHH-HTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCT
T ss_pred EEEEecCCCEEEeCHHH-HHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCH
Confidence 67887799999999997 89999999999862 3334689999999999999999998533 35788
Q ss_pred hhHHHHHHHHhhcCc
Q psy5386 110 CQLSTLLKTAESLKV 124 (287)
Q Consensus 110 ~~v~~Ll~aA~~l~i 124 (287)
+.+.+|+.||++|+|
T Consensus 82 ~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 82 EIALELLMAANFLDC 96 (96)
T ss_dssp TTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCc
Confidence 899999999999976
No 27
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=98.81 E-value=1.4e-08 Score=78.84 Aligned_cols=80 Identities=15% Similarity=0.137 Sum_probs=68.6
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCC-CCCCCEEEeCCCCHHHHHHHHHHhhcCc--------------cccc
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH-PSRHPIVILKDVCFSELRTLIEFMYRGE--------------VNVE 108 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~-e~~~~~I~L~dv~~~~f~~lL~fiYTg~--------------l~i~ 108 (287)
-|+|+..||+.|.+++.+ |..|.+++.|+..+ +.....|.|++|+..+++.+++|||.-. ..++
T Consensus 5 ~v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd 83 (99)
T 1hv2_A 5 FVTLVSKDDKEYEISRSA-AMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIP 83 (99)
T ss_dssp EEEEEETTTEEEEEEHHH-HTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCC
T ss_pred EEEEEecCCCEEEECHHH-HHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCC
Confidence 378887799999999997 89999999999864 3344689999999999999999998533 2577
Q ss_pred hhhHHHHHHHHhhcCc
Q psy5386 109 YCQLSTLLKTAESLKV 124 (287)
Q Consensus 109 ~~~v~~Ll~aA~~l~i 124 (287)
.+.+.+|+.||++|+|
T Consensus 84 ~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 84 TEMSLELLLAADYLSI 99 (99)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999986
No 28
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=98.41 E-value=5.4e-07 Score=71.45 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=66.5
Q ss_pred cEEEEccCCeEEEEecccccccCHHHHHhhcCC----CCCCCEEEeCCCCHHHHHHHHHHhhcCc-----------cccc
Q psy5386 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDH----PSRHPIVILKDVCFSELRTLIEFMYRGE-----------VNVE 108 (287)
Q Consensus 44 DV~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~----e~~~~~I~L~dv~~~~f~~lL~fiYTg~-----------l~i~ 108 (287)
-|+|+..||..|.+.+.+ |..|..++.|+... +.....|.|++|+..+++.+++|||.-. ..++
T Consensus 18 ~v~L~SsDG~~F~V~~~~-A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd 96 (112)
T 1vcb_B 18 YVKLISSDGHEFIVKREH-ALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIA 96 (112)
T ss_dssp EEEEECTTSCEEEEEHHH-HHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCC
T ss_pred EEEEEcCCCCEEEECHHH-HHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccC
Confidence 488888899999999996 78999999999852 2234689999999999999999997532 2578
Q ss_pred hhhHHHHHHHHhhcCc
Q psy5386 109 YCQLSTLLKTAESLKV 124 (287)
Q Consensus 109 ~~~v~~Ll~aA~~l~i 124 (287)
.+.+.+|+.||++|+|
T Consensus 97 ~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 97 PEIALELLMAANFLDC 112 (112)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8899999999999986
No 29
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=98.40 E-value=1.8e-06 Score=67.60 Aligned_cols=90 Identities=16% Similarity=0.236 Sum_probs=73.6
Q ss_pred EEEEccCCeEEEEecccccccC-HHHHHhhcCCC------CCCCEEEeCCCCHHHHHHHHHHhhcCccccchh-hHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACS-SYFQSLFIDHP------SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYC-QLSTLL 116 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S-~yFr~mf~~~e------~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~-~v~~Ll 116 (287)
|+|. |+|+.|...+..|+... .+|..||.+.. .....+.+ |-++..|+.||+|+.+|++.+..+ ....++
T Consensus 8 v~LN-VGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~d~~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~ 85 (107)
T 3drz_A 8 VRLN-VGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 85 (107)
T ss_dssp EEEE-ETTEEEEEEHHHHTSSTTSHHHHHHTTCGGGGGGBCTTSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHH
T ss_pred EEEE-ECCEEEEECHHHHhcCCCcchhHHHhcCCCCCcCCCCCceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHH
Confidence 4555 89999999999998875 57888987641 13345555 789999999999999999988654 457899
Q ss_pred HHHhhcCchhHHHHHHHHHh
Q psy5386 117 KTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 117 ~aA~~l~i~~L~~~c~~~l~ 136 (287)
.-|++|+|..|++.|++.+.
T Consensus 86 ~Ea~fy~l~~L~~~l~~~i~ 105 (107)
T 3drz_A 86 EEAEFYNITSLIKLVKDKIR 105 (107)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHh
Confidence 99999999999999998775
No 30
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=97.56 E-value=0.00028 Score=61.27 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCcccEEEEccCCeEEEEecccccccC-HHHHHhhcCCC------CCCCEEEeCCCCHHHHHHHHHHhhcCccccchh-h
Q psy5386 40 ESLVDVTLACSEGHSIRAHKVVLSACS-SYFQSLFIDHP------SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYC-Q 111 (287)
Q Consensus 40 ~~~~DV~l~~v~g~~f~aHk~VLaa~S-~yFr~mf~~~e------~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~-~ 111 (287)
|...+++.+-|+|+.|...+..|.... .+|..||.+.. .....+.+ |-++..|+.||+|+-+|++.+..+ .
T Consensus 8 g~~~~~V~LNVGG~~F~Tt~sTL~r~PdS~L~~lfs~~~~~~~~~De~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~ 86 (202)
T 3drx_A 8 GSVSKWVRLNVGGTYFLTTRQTLCRDPKSFLYRLCQADPDLDSDKDETGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLA 86 (202)
T ss_dssp SCCCCEEEEEETTEEEEEETTGGGSCTTSSTHHHHSCCCC----BCTTCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSC
T ss_pred CCCCCEEEEEECCEEEEEeHHHHhCCCcchHHHHhcCccccCcccCCCccEEe-cCChHHHHHHHHHhcCCccCCCCCCC
Confidence 444555444489999999999998764 47888887641 12334544 678999999999999999988654 4
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHh
Q psy5386 112 LSTLLKTAESLKVKGLAEMTQDLST 136 (287)
Q Consensus 112 v~~Ll~aA~~l~i~~L~~~c~~~l~ 136 (287)
...++.-|++|+|..|.+.|++.+.
T Consensus 87 ~~~l~eEA~FygL~~Lv~~l~~~i~ 111 (202)
T 3drx_A 87 EEGVLEEAEFYNITSLIKLVKDKIR 111 (202)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 31
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=95.78 E-value=0.0094 Score=47.65 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=60.4
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCC------CCCCCEEEeCCCCHHHHHHHHHHhhcCccccchh-hHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDH------PSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYC-QLSTLLK 117 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~------e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~-~v~~Ll~ 117 (287)
|+|- |+|+.|..-+..|..... .||... ......+.+ |-++..|+.||+|+-+|++.+..+ .+..++.
T Consensus 15 V~LN-VGG~~F~t~~~TL~~~p~---S~L~~~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~~ 89 (124)
T 1s1g_A 15 IVLN-VSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 89 (124)
T ss_dssp EEEE-ETTEEEEEEHHHHTTSTT---SSTTSSGGGGTBCSSSCSEEE-CSCHHHHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEE-eCCEEEEEeHHHHhcCCC---ceecccCCcccccCCCCcEEE-cCChHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 5555 899999999999875432 233221 112234444 569999999999999999987654 5789999
Q ss_pred HHhhcCchhHH-HHHH
Q psy5386 118 TAESLKVKGLA-EMTQ 132 (287)
Q Consensus 118 aA~~l~i~~L~-~~c~ 132 (287)
-|++|+|..+. +.|+
T Consensus 90 Ea~fy~i~~l~l~~cC 105 (124)
T 1s1g_A 90 ELAFYGILPEIIGDCC 105 (124)
T ss_dssp HHHHTTCCGGGBCHHH
T ss_pred HHHHcCCChHHHHHHH
Confidence 99999999873 5543
No 32
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2
Probab=95.66 E-value=0.01 Score=46.86 Aligned_cols=81 Identities=11% Similarity=0.021 Sum_probs=61.6
Q ss_pred EEEEccCCeEEEEecccccccCH-HHHHhhcCCC---CCCCEEEeCCCCHHHHHHHHHHhhcCccccchh-hHHHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSS-YFQSLFIDHP---SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYC-QLSTLLKTA 119 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~-yFr~mf~~~e---~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~-~v~~Ll~aA 119 (287)
|+|- |+|+.|...+..|..... .+..||.... .....+.+ |-++..|+.||+|+-+|++.+..+ .+..++.-|
T Consensus 7 V~LN-VGG~~f~T~~~TL~~~P~s~L~~l~~~~~~~~~~~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea 84 (115)
T 3kvt_A 7 VIIN-VGGIRHETYKATLKKIPATRLSRLTEGMLNYDPVLNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEEL 84 (115)
T ss_dssp EEEE-ETTEEEEEEHHHHTTSCSSTTTTCCTTSTTEETTTTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHH
T ss_pred EEEE-ECCEEEEecHHHHhcCCCccHHHHhcCCCCCCCCCCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHH
Confidence 5666 799999999999987643 3455555321 23345555 578999999999999999987654 578899999
Q ss_pred hhcCchhH
Q psy5386 120 ESLKVKGL 127 (287)
Q Consensus 120 ~~l~i~~L 127 (287)
++|+|...
T Consensus 85 ~fy~i~~~ 92 (115)
T 3kvt_A 85 EFWGLDSN 92 (115)
T ss_dssp HHHTCCGG
T ss_pred HHhCCChH
Confidence 99999875
No 33
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A
Probab=95.15 E-value=0.016 Score=44.57 Aligned_cols=82 Identities=10% Similarity=0.090 Sum_probs=59.2
Q ss_pred EEEEccCCeEEEEecccccccCH-HHHHhhcCC---CCCCCEEEeCCCCHHHHHHHHHHhhc-Cccccchh-hHHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSS-YFQSLFIDH---PSRHPIVILKDVCFSELRTLIEFMYR-GEVNVEYC-QLSTLLKT 118 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~-yFr~mf~~~---e~~~~~I~L~dv~~~~f~~lL~fiYT-g~l~i~~~-~v~~Ll~a 118 (287)
|+|- |+|+.|...+..|+..-. .+..|+... ......+-+ |-++..|+.||+|+-+ |++.+..+ .+..++.-
T Consensus 3 v~LN-VGG~~f~t~~~TL~~~p~s~L~~~~~~~~~~~~~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~E 80 (100)
T 1t1d_A 3 VVIN-VSGLRFETQLKTLNQFPDTLLGNPQKRNRYYDPLRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEE 80 (100)
T ss_dssp EEEE-ETTEEEEEEHHHHHTSTTSTTTCHHHHGGGEETTTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHH
T ss_pred EEEE-ECCEEEEeeHHHHhcCCCccccchhccccccCCCceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHH
Confidence 5666 799999999999965421 222333221 123345555 6789999999999999 89977544 57889999
Q ss_pred HhhcCchhHH
Q psy5386 119 AESLKVKGLA 128 (287)
Q Consensus 119 A~~l~i~~L~ 128 (287)
|++|+|..+.
T Consensus 81 a~fy~i~~~~ 90 (100)
T 1t1d_A 81 IKFYELGENA 90 (100)
T ss_dssp HHHTTCCHHH
T ss_pred HHHcCCCHHH
Confidence 9999998753
No 34
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=94.45 E-value=0.048 Score=44.42 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=58.4
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCC------CCCCCEEEeCCCCHHHHHHHHHHhhcCccccchh-hHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDH------PSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYC-QLSTLLK 117 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~------e~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~-~v~~Ll~ 117 (287)
|+|- |+|+.|...+..|..... .||... ......+.+ |-++..|+.||+|+-+|++.+..+ .+..++.
T Consensus 37 V~LN-VGG~~F~T~~~TL~~~P~---S~L~~~~~~~~~~~~~g~yFi-DRdp~~F~~ILnflR~G~l~~p~~~~~~~l~e 111 (140)
T 2nz0_B 37 IVLN-VSGRRFQTWRTTLERYPD---TLLGSTEKEFFFNEDTKEYFF-DRDPEVFRCVLNFYRTGKLHYPRYECISAYDD 111 (140)
T ss_dssp EEEE-ETTEEEEEEHHHHHTCTT---STTTSGGGGGSEETTTTEEEE-CSCHHHHHHHHHHHHHSSBCCCTTSCHHHHHH
T ss_pred EEEE-ECCEEEEeeHHHHhcCCC---eeecccCCcccccCCCCeEEE-eCCcHHHHHHHHHHhcCCcCCCCCcCHHHHHH
Confidence 5555 899999999999875432 233321 122345555 569999999999999999987654 5888999
Q ss_pred HHhhcCchhH
Q psy5386 118 TAESLKVKGL 127 (287)
Q Consensus 118 aA~~l~i~~L 127 (287)
-|++|+|..+
T Consensus 112 Ea~fy~i~~l 121 (140)
T 2nz0_B 112 ELAFYGILPE 121 (140)
T ss_dssp HHHHHTCCGG
T ss_pred HHHHcCCChH
Confidence 9999999987
No 35
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=93.95 E-value=0.015 Score=45.06 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=60.1
Q ss_pred EEEEccCCeEEEEecccccccCHHHHHhhcCCC------CCCCEEEeCCCCHHHHHHHHHHhhcCccccchh-hHHHHHH
Q psy5386 45 VTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP------SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYC-QLSTLLK 117 (287)
Q Consensus 45 V~l~~v~g~~f~aHk~VLaa~S~yFr~mf~~~e------~~~~~I~L~dv~~~~f~~lL~fiYTg~l~i~~~-~v~~Ll~ 117 (287)
|+|- |+|+.|...+..|..... .||.... .....+.+ |-++..|+.||+|+-+|++.+..+ .+..++.
T Consensus 2 V~LN-VGG~~f~t~~~TL~~~p~---s~L~~~~~~~~~~~~~~~~Fi-DRdp~~F~~ILnflR~g~l~~p~~~~~~~l~~ 76 (105)
T 1nn7_A 2 IVLN-VSGTRFQTWQDTLERYPD---TLLGSSERDFFYHPETQQYFF-DRDPDIFRHILNFYRTGKLHYPRHECISAYDE 76 (105)
T ss_dssp EEEE-ETTEEEEECHHHHHTSCS---SSTTSGGGGGGEEGGGTEEEE-CSCTTTHHHHHHHHHHSCBCCCTTSCHHHHHH
T ss_pred EEEE-ECCEEEEEeHHHHhcCCC---ccccccCCcccccCCCCcEEE-eCCcHHHHHHHHHHhcCCCCCCCCcCHHHHHH
Confidence 5677 799999999998865432 2232211 12234444 568999999999999999987654 5788999
Q ss_pred HHhhcCchhH-HHHHH
Q psy5386 118 TAESLKVKGL-AEMTQ 132 (287)
Q Consensus 118 aA~~l~i~~L-~~~c~ 132 (287)
-|++|+|..+ ++.|+
T Consensus 77 Ea~fy~i~~l~~~~cc 92 (105)
T 1nn7_A 77 ELAFFGLIPEIIGDCC 92 (105)
T ss_dssp HHHHHTCCSCCBCHHH
T ss_pred HHHHcCCCHHHHHHHH
Confidence 9999999986 34444
No 36
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.78 E-value=0.22 Score=37.96 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=37.6
Q ss_pred CccccchhhHHHHHHHHhhcCchhHHHHHHHHHhccCCCCCCccccccCCCCcccc
Q psy5386 103 GEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHS 158 (287)
Q Consensus 103 g~l~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~~~~~~~~~~~~~v~~~~~~~ 158 (287)
+.-.++.+|...++.+|+.|+++.|.+.|.+|+. ++|.++..+++|.
T Consensus 4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~---------~nF~~v~~~~eFl 50 (105)
T 2eqx_A 4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAK---------THLAQLQNTEEFL 50 (105)
T ss_dssp CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHH---------HTCHHHHTSHHHH
T ss_pred hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHHHHHHhcccHh
Confidence 3456788999999999999999999999999987 3455555565554
No 37
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=82.02 E-value=1.4 Score=42.84 Aligned_cols=87 Identities=7% Similarity=0.014 Sum_probs=58.8
Q ss_pred CcccEEEEccCCeEEEEecccccccCHHH-HHhhcCC---CCCCCEEEeCCCCHHHHHHHHHHhhc-Cccccchh-hHHH
Q psy5386 41 SLVDVTLACSEGHSIRAHKVVLSACSSYF-QSLFIDH---PSRHPIVILKDVCFSELRTLIEFMYR-GEVNVEYC-QLST 114 (287)
Q Consensus 41 ~~~DV~l~~v~g~~f~aHk~VLaa~S~yF-r~mf~~~---e~~~~~I~L~dv~~~~f~~lL~fiYT-g~l~i~~~-~v~~ 114 (287)
..+|.+.+=|+|+.|...+..|...-.-+ -.++... .....++.+ |=++..|+.||+|+.+ |++.+..+ ....
T Consensus 49 ~~~~~v~lNVgG~~f~t~~~tL~~~p~s~l~~~~~~~~~~~~~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~ 127 (514)
T 2r9r_B 49 ESSERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFDPLRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDI 127 (514)
T ss_dssp --CCEEEEEETTEEEEEEHHHHTTSTTSTTTCHHHHGGGEETTTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHH
T ss_pred CCCCEEEEEeCCEEEEecHHHHhcCCCCcccccccCCcccCCCCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHH
Confidence 34454443379999999999986542211 1111110 123345555 7799999999999999 99987654 5677
Q ss_pred HHHHHhhcCchhHH
Q psy5386 115 LLKTAESLKVKGLA 128 (287)
Q Consensus 115 Ll~aA~~l~i~~L~ 128 (287)
++.-|++|++..+.
T Consensus 128 ~~~E~~f~~i~~~~ 141 (514)
T 2r9r_B 128 FSEEIRFYELGEEA 141 (514)
T ss_dssp HHHHHHHTTCCHHH
T ss_pred HHHHHHhcCCCHHH
Confidence 89999999998754
No 38
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=64.63 E-value=11 Score=29.98 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=29.9
Q ss_pred ccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 106 NVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 106 ~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.++.+++..++.+|+.|+++.|++.|.+|+...
T Consensus 131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~ 163 (172)
T 3htm_A 131 NLSVENAAEILILADLHSADQLKTQAVDFINYH 163 (172)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999854
No 39
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=49.58 E-value=13 Score=32.75 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=29.8
Q ss_pred ccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 106 NVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 106 ~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.++.+++..++.+|+.|++..|++.|.+|+...
T Consensus 271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~ 303 (312)
T 3hqi_A 271 NLSVENAAEILILADLHSADQLKTQAVDFINYH 303 (312)
T ss_dssp TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 357789999999999999999999999999854
No 40
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=41.27 E-value=23 Score=30.73 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=29.5
Q ss_pred ccchhhHHHHHHHHhhcCchhHHHHHHHHHhcc
Q psy5386 106 NVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRS 138 (287)
Q Consensus 106 ~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~~ 138 (287)
.++.+|+..++..|+.|++..|.+.|.+|+...
T Consensus 138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~ 170 (279)
T 3i3n_A 138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRN 170 (279)
T ss_dssp HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 467789999999999999999999999999643
No 41
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=34.77 E-value=39 Score=28.75 Aligned_cols=32 Identities=3% Similarity=-0.092 Sum_probs=28.6
Q ss_pred ccchhhHHHHHHHHhhcCchhHHHHHHHHHhc
Q psy5386 106 NVEYCQLSTLLKTAESLKVKGLAEMTQDLSTR 137 (287)
Q Consensus 106 ~i~~~~v~~Ll~aA~~l~i~~L~~~c~~~l~~ 137 (287)
.++.+|+..++..|+.|++..|.+.|.+|+..
T Consensus 130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~ 161 (256)
T 3hve_A 130 CIAAENCIGIRDFALHYCLHHVHYLATEYLET 161 (256)
T ss_dssp TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 35677999999999999999999999999863
Done!