RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5386
(287 letters)
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain. The BTB (for BR-C, ttk and bab) or
POZ (for Pox virus and Zinc finger) domain is present
near the N-terminus of a fraction of zinc finger
(pfam00096) proteins and in proteins that contain the
pfam01344 motif such as Kelch and a family of pox virus
proteins. The BTB/POZ domain mediates homomeric
dimerisation and in some instances heteromeric
dimerisation. The structure of the dimerised PLZF
BTB/POZ domain has been solved and consists of a tightly
intertwined homodimer. The central scaffolding of the
protein is made up of a cluster of alpha-helices flanked
by short beta-sheets at both the top and bottom of the
molecule. POZ domains from several zinc finger proteins
have been shown to mediate transcriptional repression
and to interact with components of histone deacetylase
co-repressor complexes including N-CoR and SMRT. The POZ
or BTB domain is also known as BR-C/Ttk or ZiN.
Length = 101
Score = 101 bits (253), Expect = 4e-27
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 33 FSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDVCFSE 92
++L + L DVTL AHK VL+ACS YF++LF + + L+DV +
Sbjct: 1 LNELRENGELCDVTLVV-GDKEFHAHKAVLAACSPYFKALFTGNKEVE--ITLEDVSPED 57
Query: 93 LRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQD 133
L+EF+Y G++ + + LL A+ L++ L + ++
Sbjct: 58 FEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDKCEE 98
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac. Domain
in Broad-Complex, Tramtrack and Bric a brac. Also known
as POZ (poxvirus and zinc finger) domain. Known to be a
protein-protein interaction motif found at the N-termini
of several C2H2-type transcription factors as well as
Shaw-type potassium channels. Known structure reveals a
tightly intertwined dimer formed via interactions
between N-terminal strand and helix structures. However
in a subset of BTB/POZ domains, these two secondary
structures appear to be missing. Be aware SMART predicts
BTB/POZ domains without the beta1- and alpha1-secondary
structures.
Length = 97
Score = 88.1 bits (219), Expect = 3e-22
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 44 DVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP--SRHPIVILKDVCFSELRTLIEFMY 101
DVTL G AHK VL+A S YF++LF S + L DV + R L+ F+Y
Sbjct: 1 DVTLVV-GGKKFHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFRALLNFLY 59
Query: 102 RGEVNVEYCQLSTLLKTAESLKVKGLAEMTQD 133
G++++ + LL+ A+ L++ GL E+ ++
Sbjct: 60 TGKLDLPEENVEELLELADYLQIPGLVELCEE 91
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional.
Length = 534
Score = 51.3 bits (123), Expect = 2e-07
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 39 DESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIVILKDV-CFSELRTLI 97
DES++ V G I+ HK++LS+ S YF+ +F ++ + I + D F+E +I
Sbjct: 11 DESIIIVN----GGGIIKVHKIILSSSSEYFKKMFKNNFKENEINLNIDYDSFNE---VI 63
Query: 98 EFMYRGEVNVEYCQLSTLLKTAESLKVK 125
+++Y G++N+ + +L A L +
Sbjct: 64 KYIYTGKINITSNNVKDILSIANYLIID 91
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional.
Length = 557
Score = 46.2 bits (109), Expect = 1e-05
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 25 HQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLF 73
H ++ S LL D+ L DV + +G I+AHK +L+A S YF++LF
Sbjct: 8 HNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLF 56
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 35.7 bits (82), Expect = 0.028
Identities = 28/137 (20%), Positives = 40/137 (29%), Gaps = 13/137 (9%)
Query: 133 DLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSP 192
PP+ + A P A + +RL ++S E P
Sbjct: 2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA-----------VASLSESRESLP 2799
Query: 193 RPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPG 252
P P+ PP +L SP+ P S+ + P PL G PG
Sbjct: 2800 SPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG 2859
Query: 253 P--SGLPPVQQVPLTIA 267
PP + A
Sbjct: 2860 GDVRRRPPSRSPAAKPA 2876
Score = 35.3 bits (81), Expect = 0.041
Identities = 25/124 (20%), Positives = 35/124 (28%), Gaps = 6/124 (4%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSP 199
P +S PA + P + ++ P P P
Sbjct: 2721 LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG-P 2779
Query: 200 PPDCPEPSNLSLKEDRS--PSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEP---VPGPS 254
P P+ SL E R PSP D D + P+ + P+ P P
Sbjct: 2780 PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP 2839
Query: 255 GLPP 258
PP
Sbjct: 2840 PPPP 2843
Score = 34.5 bits (79), Expect = 0.077
Identities = 27/146 (18%), Positives = 36/146 (24%), Gaps = 31/146 (21%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSP 199
PP P A + P L + + P P P +P
Sbjct: 2930 QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAP 2989
Query: 200 PPDCPEP------------SNLSLKEDRSPSP-------------PDVDDVSSMQSGPSD 234
P S+L+L E+ P P D D S S
Sbjct: 2990 ASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSER 3049
Query: 235 MTLNSRIP------SPLSGEPVPGPS 254
L + P P + EP P
Sbjct: 3050 SDLEALDPLPPEPHDPFAHEPDPATP 3075
Score = 34.1 bits (78), Expect = 0.090
Identities = 22/122 (18%), Positives = 31/122 (25%), Gaps = 9/122 (7%)
Query: 137 RSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQT 196
R P + S A PP +R + + P P P+
Sbjct: 2884 RRLARPAVSRSTESFALPPDQ----PERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939
Query: 197 PSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGL 256
P +P+ P P V + P R+P P P S
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVP-----RFRVPQPAPSREAPASSTP 2994
Query: 257 PP 258
P
Sbjct: 2995 PL 2996
Score = 32.6 bits (74), Expect = 0.30
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 3/121 (2%)
Query: 141 APPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPP 200
+P NE PP + R + +P + RRL + ++P RP+ +
Sbjct: 2630 SPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR 2689
Query: 201 PDCPEPSNLSLKED--RSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPP 258
P ++L+ +P P VS+ P P L P P P
Sbjct: 2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP-ALPAAPAPPAVPAGP 2748
Query: 259 V 259
Sbjct: 2749 A 2749
Score = 32.6 bits (74), Expect = 0.30
Identities = 28/130 (21%), Positives = 39/130 (30%), Gaps = 23/130 (17%)
Query: 140 TAPPSQENESSSAEPPAHSTA----LQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQ 195
TAPP + P S A +++R + P + R R S +
Sbjct: 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896
Query: 196 TPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSG 255
+ + PPD PE P P P + P P +P P P
Sbjct: 2897 SFALPPDQPER----------PPQPQA---------PPPPQPQPQPPPPPQPQPPPPPPP 2937
Query: 256 LPPVQQVPLT 265
P P T
Sbjct: 2938 RPQPPLAPTT 2947
Score = 32.2 bits (73), Expect = 0.36
Identities = 32/137 (23%), Positives = 47/137 (34%), Gaps = 17/137 (12%)
Query: 129 EMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERN 188
E +D R + P + A + +R A P V LT++
Sbjct: 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLAD--------- 2700
Query: 189 TPSPRPQTPSPPPD-----CPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPS 243
P P P TP P P P P + SP+ P ++ +GP+ +R
Sbjct: 2701 -PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759
Query: 244 P--LSGEPVPGPSGLPP 258
P +G P P P P
Sbjct: 2760 PPTTAGPPAPAPPAAPA 2776
Score = 30.7 bits (69), Expect = 1.1
Identities = 31/139 (22%), Positives = 44/139 (31%), Gaps = 10/139 (7%)
Query: 119 AESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIK 178
SL + G D+ R + P+ + ++ A PP A ++
Sbjct: 2847 PPSLPLGGSVAPGGDVRRRPPSRSPAAK-PAAPARPPVRRLARPAVSRSTESFALPPDQP 2905
Query: 179 RRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLN 238
R P P+PQ P PP P P R P + PS
Sbjct: 2906 ERPPQPQAPPPPQPQPQPPPPPQPQPPPP----PPPRPQPPLAPTTDPAGAGEPS----- 2956
Query: 239 SRIPSPLSGEPVPGPSGLP 257
+P P G VPG +P
Sbjct: 2957 GAVPQPWLGALVPGRVAVP 2975
Score = 29.5 bits (66), Expect = 2.8
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 8/94 (8%)
Query: 138 SRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTP 197
+R + ++ P + T + AS P T + D+ P P Q P
Sbjct: 396 ARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPP 455
Query: 198 SPPPDCPEPSNL--------SLKEDRSPSPPDVD 223
+P + +L+E R P PP D
Sbjct: 456 APATEPAPDDPDDATRKALDALRERRPPEPPGAD 489
Score = 29.1 bits (65), Expect = 3.2
Identities = 23/122 (18%), Positives = 31/122 (25%), Gaps = 13/122 (10%)
Query: 137 RSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQT 196
R PPS + S+ +L R S T R D+ P
Sbjct: 356 RPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSAR--HAATPFARGPGGDD--QTRPAAPV 411
Query: 197 PSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGL 256
P+ P + +PP SD + P P P P
Sbjct: 412 PASVPTPAPTPVP------ASAPPPPATPLPSAEPGSD---DGPAPPPERQPPAPATEPA 462
Query: 257 PP 258
P
Sbjct: 463 PD 464
Score = 28.0 bits (62), Expect = 8.9
Identities = 18/70 (25%), Positives = 19/70 (27%)
Query: 189 TPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGE 248
T +P P PSP P EP P P D S P R S
Sbjct: 2621 THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPP 2680
Query: 249 PVPGPSGLPP 258
P P
Sbjct: 2681 QRPRRRAARP 2690
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 34.4 bits (79), Expect = 0.080
Identities = 23/137 (16%), Positives = 32/137 (23%), Gaps = 15/137 (10%)
Query: 132 QDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASP---PVIELTTIKRRLSSEDERN 188
RS + SS+ + + P P+ T I +
Sbjct: 221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSS 280
Query: 189 TPSPRPQTPSPPPDCPEP-----------SNLSLKEDRSPSPPDVDDVSSMQSGPSDMTL 237
P P + SP P P S+ S S S+ S S
Sbjct: 281 RPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSS-STSSSSESSRGA 339
Query: 238 NSRIPSPLSGEPVPGPS 254
S P P
Sbjct: 340 AVSPGPSPSRSPSPSRP 356
Score = 33.6 bits (77), Expect = 0.15
Identities = 28/138 (20%), Positives = 39/138 (28%), Gaps = 19/138 (13%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIK------RRLSSEDERNTPSPR 193
A E + PP T S P L+T+ + ++P P
Sbjct: 58 GAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP 117
Query: 194 PQT-------PSPPPDCPEPSNLSLKEDRSPSPPDVD------DVSSMQSGPSDMTLNSR 240
P T PSP PD E P+ V+S + L
Sbjct: 118 PPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLS 177
Query: 241 IPSPLSGEPVPGPSGLPP 258
P + P P+ PP
Sbjct: 178 SPEETARAPSSPPAEPPP 195
Score = 33.2 bits (76), Expect = 0.16
Identities = 25/128 (19%), Positives = 35/128 (27%), Gaps = 6/128 (4%)
Query: 135 STRSRTAPPSQENESSS---AEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPS 191
+SR+ P +ESS A + E+S + R + R P
Sbjct: 818 KRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPP 877
Query: 192 PRPQTP---SPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGE 248
P +PP R P V GP R+P
Sbjct: 878 EPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMPPGGPDPRGGFRRVPPGDLHT 937
Query: 249 PVPGPSGL 256
P P + L
Sbjct: 938 PAPSAAAL 945
Score = 30.9 bits (70), Expect = 0.87
Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 9/143 (6%)
Query: 137 RSRTAPPSQENESSSAEPPAHSTALQQ-----RLEASPPVIELTTIKRRLSSEDERNTP- 190
+ P + + S+ P A ++ R + T KR+ S
Sbjct: 772 LALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSE 831
Query: 191 SPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVS---SMQSGPSDMTLNSRIPSPLSG 247
S P P P P+ S P+ + P + +P
Sbjct: 832 SSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKA 891
Query: 248 EPVPGPSGLPPVQQVPLTIAKVI 270
P+G P + P K+
Sbjct: 892 AAAAPPAGAPAPRPRPAPRVKLG 914
Score = 30.9 bits (70), Expect = 1.0
Identities = 22/131 (16%), Positives = 32/131 (24%), Gaps = 7/131 (5%)
Query: 133 DLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSP 192
+ R P ++ S + L A V R P P
Sbjct: 19 EFFPRPPATPGDAADDLLSGSQGQLVSD-SAELAAVTVVAGAAACDRFEPPTGP--PPGP 75
Query: 193 RPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPG 252
+ P+ +LS SP+ S P P S P P
Sbjct: 76 GTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP----PPTPPPASPPPSPA 131
Query: 253 PSGLPPVQQVP 263
P ++ V
Sbjct: 132 PDLSEMLRPVG 142
Score = 29.4 bits (66), Expect = 2.7
Identities = 20/116 (17%), Positives = 29/116 (25%), Gaps = 9/116 (7%)
Query: 135 STRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRP 194
S + S E S + P+ S P SS E ++ S
Sbjct: 280 SRPGPASSSSSPRERSPSPSPSSP--------GSGPAPSSPRASSSSSSSRESSSSSTSS 331
Query: 195 QTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSM-QSGPSDMTLNSRIPSPLSGEP 249
+ S P + PP D SS + +S S
Sbjct: 332 SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTR 387
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 33.5 bits (77), Expect = 0.089
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 23/124 (18%)
Query: 143 PSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPD 202
+ +S ++PP+ S + P + + S P PS
Sbjct: 176 DADPASASPSDPPSSSPG-VPSFPSPPE-------------DPSSPSDSSLPPAPSSFQS 221
Query: 203 CPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQV 262
P + + +PSPP +P + +P P + P
Sbjct: 222 DTPPPSP--ESPTNPSPPPGPAAPPPPPVQQ-------VPPLSTAKPTPPSASATPAPIG 272
Query: 263 PLTI 266
+T+
Sbjct: 273 GITL 276
Score = 29.3 bits (66), Expect = 2.6
Identities = 21/111 (18%), Positives = 28/111 (25%), Gaps = 4/111 (3%)
Query: 153 EPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLK 212
E P L + E + + D + P + SP
Sbjct: 146 EDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 213 EDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVP 263
S P + P + P P P PPVQQVP
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP----PGPAAPPPPPVQQVP 252
Score = 27.3 bits (61), Expect = 9.8
Identities = 16/105 (15%), Positives = 25/105 (23%)
Query: 132 QDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPS 191
S P S S PP ++ P + +P
Sbjct: 178 DPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237
Query: 192 PRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMT 236
P P P PPP P + K + + + +
Sbjct: 238 PGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDAIA 282
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 32.8 bits (75), Expect = 0.20
Identities = 12/96 (12%), Positives = 28/96 (29%)
Query: 141 APPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPP 200
+ + +A P A ++A A+PP ++ + P
Sbjct: 394 VAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPA 453
Query: 201 PDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMT 236
PE + ++ P+ + + +T
Sbjct: 454 QAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLT 489
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 32.5 bits (74), Expect = 0.24
Identities = 30/161 (18%), Positives = 48/161 (29%), Gaps = 36/161 (22%)
Query: 139 RTAPPSQENESSSAEPPAHSTALQQRLEASPPVIEL------TTIKRRL----------- 181
A P+ +AEP +T L Q S PVI I + +
Sbjct: 183 NRADPNIITRIKNAEPKTIATELVQESNESEPVITNEQDFDRLNIDQLVDYINKNNDGQF 242
Query: 182 ------SSEDERNTPS-------PRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSM 228
S +D RN QTP P P+ + +P ++ +
Sbjct: 243 NFDAHDSVDDVRNFAKTVWRQKNTPAQTPMPERSWQTPAQTPARRISTPMTEEIKSWQTP 302
Query: 229 QSGPSDMTLNSRIPSPLSGE------PVPGPSGLPPVQQVP 263
P+ + + + P P PS L + +P
Sbjct: 303 LQTPAMYSSDYQAPKPEPIYTWEELLRERFPSDLFAISSLP 343
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human Gammaherpesvirus
that infects and establishes latency in B lymphocytes in
vivo. The latent membrane protein 2 (LMP2) gene is
expressed in latently infected B cells and encodes two
protein isoforms, LMP2A and LMP2B, that are identical
except for an additional N-terminal 119 aa cytoplasmic
domain which is present in the LMP2A isoform. LMP2A is
thought to play a key role in either the establishment
or the maintenance of latency and/or the reactivation of
productive infection from the latent state. The
significance of LMP2B and its role in pathogenesis
remain unclear.
Length = 489
Score = 32.5 bits (74), Expect = 0.26
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 11/103 (10%)
Query: 185 DERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSP 244
+ + P P + D P P + S PP + + G L + PS
Sbjct: 24 EGDSNPYY-PSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDRHGGY-QPLGQQDPSL 81
Query: 245 LSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFISHPGQA 287
+G G GLPP P ++ G H P A
Sbjct: 82 YAGLGQNGGGGLPPPPYSP---------RDQGSEHVYEEPRDA 115
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 31.9 bits (72), Expect = 0.28
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 111 QLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPP 170
+++T+ KT+ +L + +T + T P S + E+ + PP+ ++EA
Sbjct: 2 KITTIAKTSLALGLLTTGVITTTTQAANATTPSSTKVEAPQSTPPS------TKVEAPQS 55
Query: 171 VIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDV 222
TT PS + + P P+ PS+ ++ +SP+ V
Sbjct: 56 KPNATT------------PPSTKVEAPQQTPNATTPSSTKVETPQSPTTKQV 95
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 32.1 bits (73), Expect = 0.40
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 159 TALQQRLEASPPVIELT---TIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDR 215
AL R E + ++L + R ++ P P P P P P PE +
Sbjct: 238 AALHGRTEVTEEDLKLAVELVLLPR-ATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTD 296
Query: 216 SPSPPDVDDV 225
+ D +
Sbjct: 297 PDDGEETDQI 306
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 32.0 bits (72), Expect = 0.40
Identities = 42/153 (27%), Positives = 57/153 (37%), Gaps = 23/153 (15%)
Query: 129 EMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERN 188
++ QD + S + P Q+NES S S+A QQ L+ P L+
Sbjct: 142 DIDQDNRSSSPSIPSPQDNESDS-----DSSAQQQLLQPQGPPSIQVPPGAALAPSAPPP 196
Query: 189 TPSPR-------PQTPSPPPDCPEPSNLSLKEDR--------SPSPPDVDDVSSMQSGPS 233
TPS + P P P +PS LSL SP PP +S QS
Sbjct: 197 TPSAQAVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQP 256
Query: 234 DMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTI 266
+ S G PGP +QQ P+ +
Sbjct: 257 PAPSSRHPQSSHHG---PGPPMPHALQQGPVFL 286
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 30.3 bits (69), Expect = 1.1
Identities = 14/86 (16%), Positives = 23/86 (26%)
Query: 129 EMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERN 188
E ++ + PP + P P T + S+ +
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQI 570
Query: 189 TPSPRPQTPSPPPDCPEPSNLSLKED 214
P P P P P+ S E+
Sbjct: 571 PADSSPPPPIPEEPTPSPTKDSSPEE 596
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 30.0 bits (68), Expect = 1.2
Identities = 26/126 (20%), Positives = 35/126 (27%), Gaps = 15/126 (11%)
Query: 101 YRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTA 160
Y + +E LK + L V LS A S E P + +
Sbjct: 260 YSSGI-LEVV--GAPLKQSSLLDV--------SLSVVLLNADSSVEANG---VEPEPTGS 305
Query: 161 LQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPP 220
+ R + S+ TP P + SPP P LS K R
Sbjct: 306 VSDRPR-HLSSDSSPSPPDTSDSDPSTETPPPASLSHSPPAAFERPLALSPKRKREGDKK 364
Query: 221 DVDDVS 226
S
Sbjct: 365 QKKKKS 370
Score = 28.9 bits (65), Expect = 2.9
Identities = 24/94 (25%), Positives = 29/94 (30%), Gaps = 11/94 (11%)
Query: 167 ASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVS 226
+S + L+ + S E N T S S D SPSPPD D
Sbjct: 275 SSLLDVSLSVVLLNADSSVEAN-GVEPEPTGSVSDRPRHLS-----SDSSPSPPDTSD-- 326
Query: 227 SMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQ 260
S PS T S P L P +
Sbjct: 327 ---SDPSTETPPPASLSHSPPAAFERPLALSPKR 357
>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional.
Length = 612
Score = 30.5 bits (69), Expect = 1.3
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 153 EPPAHSTALQQRLEASPPVIELTTIKRRLSSED-ERNTPS---PRPQTPSPPPDCPEPSN 208
E P H+ L L + P + LTT + E RN P PR PD
Sbjct: 126 ELPGHAERLDTALRDAEPTVVLTTTAAAEAVEGFLRNLPRLRRPRVIAIDAIPD------ 179
Query: 209 LSLKEDRSPSPPDVDDVSSMQ 229
S E P D DDVS +Q
Sbjct: 180 -SAGESFVPVELDTDDVSHLQ 199
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 30.1 bits (67), Expect = 1.4
Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 8/139 (5%)
Query: 105 VNVEYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQR 164
V E Q ST + +LK + LA + S T + + + + +++
Sbjct: 28 VKAEKIQ-STKVDKVPTLKAERLAMINITAGANSATTQAANTRQERTPKLEKAPNTNEEK 86
Query: 165 LEAS-------PPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSP 217
AS P E ++ + ++ ++ +P P + + +
Sbjct: 87 TSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKVTTPPSTNTPQPMQS 146
Query: 218 SPPDVDDVSSMQSGPSDMT 236
+ D +++ +DMT
Sbjct: 147 TKSDTPQSPTIKQAQTDMT 165
Score = 27.8 bits (61), Expect = 7.8
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 9/99 (9%)
Query: 135 STRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRP 194
S + + P QE + S A Q++ + + E TT K ++++ NTP
Sbjct: 90 SKIEKISQPKQEEQKS-LNISATPAPKQEQSQTTT---ESTTPKTKVTTPPSTNTP---- 141
Query: 195 QTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPS 233
P P + ++K+ ++ P +D+ + + PS
Sbjct: 142 -QPMQSTKSDTPQSPTIKQAQTDMTPKYEDLRAYYTKPS 179
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 30.0 bits (68), Expect = 1.5
Identities = 17/76 (22%), Positives = 24/76 (31%)
Query: 190 PSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEP 249
P+P P+ D P + S P DD + P D + P+ P
Sbjct: 703 PAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP 762
Query: 250 VPGPSGLPPVQQVPLT 265
P P+ P P
Sbjct: 763 APAPAAAPAAAPPPSP 778
Score = 30.0 bits (68), Expect = 1.9
Identities = 23/125 (18%), Positives = 36/125 (28%), Gaps = 22/125 (17%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSP 199
AP + ++A PA + A+ + P+P P
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAP------AAAAA----------PAPAAAPQPAPAPAPAPA 440
Query: 200 PPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPL-SGEPVPGPSGLPP 258
PP + +PSPP S Q P+ +P + P P+ P
Sbjct: 441 PPSPAGNAPAG----GAPSPPPAAA-PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPA 495
Query: 259 VQQVP 263
P
Sbjct: 496 APAAP 500
Score = 28.8 bits (65), Expect = 4.5
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 2/96 (2%)
Query: 141 APPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTP--S 198
A + ++ A A A +PP S PS +P +
Sbjct: 413 AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAA 472
Query: 199 PPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSD 234
P P+ + P + +G D
Sbjct: 473 APEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
Score = 28.0 bits (63), Expect = 6.8
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 9/99 (9%)
Query: 135 STRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRL--------SSEDE 186
+ PP+ + + +A+PP + A+ + L
Sbjct: 702 APAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPP 761
Query: 187 RNTPSPRPQTPSPPPDCPEPSNLSLKED-RSPSPPDVDD 224
+PPP P ++D S D D
Sbjct: 762 PAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRD 800
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 30.1 bits (68), Expect = 1.6
Identities = 22/139 (15%), Positives = 32/139 (23%), Gaps = 14/139 (10%)
Query: 138 SRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDE-------RNTP 190
R P +SS P + + +A ++ ++ R T
Sbjct: 5 PRGQPGRWNYDSSDESP---EGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETG 61
Query: 191 SPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPV 250
S S P P + P P SP G
Sbjct: 62 SGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADS 121
Query: 251 PGPSGL----PPVQQVPLT 265
P L PV P+
Sbjct: 122 TSPRFLYQVNFPVILAPIG 140
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 30.2 bits (68), Expect = 1.6
Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 145 QENESSSAEPPA-HSTALQQRLEASPPVIELTTIKRRLSS-EDERNTPSP---RPQTPSP 199
Q + AEP TA +L+ LT R+ E TP P PQ P P
Sbjct: 973 QAGVTGIAEPKGVELTAEGLKLDP------LTAAVVRVGGIEAPEKTPPPPEHEPQAPKP 1026
Query: 200 PPDCPEPS-NLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPS-PLSGEPVP 251
P P+ S + + P S ++G + + P G +P
Sbjct: 1027 PTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENGETPKGNEEKKEEQPDKGANLP 1080
>gnl|CDD|218082 pfam04425, Bul1_N, Bul1 N terminus. This family contains the N
terminus of Saccharomyces cerevisiae Bul1. Bul1 binds
the ubiquitin ligase Rsp5, via an N terminal PPSY motif.
The complex containing Bul1 and Rsp5 is involved in
intracellular trafficking of the general amino acid
permease Gap1, degradation of Rog1 in cooperation with
Bul2 and GSK-3, and mitochondrial inheritance. Bul1 may
contain HEAT repeats.
Length = 432
Score = 29.6 bits (67), Expect = 1.9
Identities = 15/80 (18%), Positives = 25/80 (31%)
Query: 135 STRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRP 194
+T + PP EN PP++ + P T LS E T +
Sbjct: 32 NTIHKHIPPGNENPDLHDFPPSYEEVPSSSPSPTSPSSSNTVSASSLSLESPNTTEASNS 91
Query: 195 QTPSPPPDCPEPSNLSLKED 214
+ N +++D
Sbjct: 92 PEETHLNIENNEHNTPIEDD 111
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 29.8 bits (67), Expect = 2.0
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 14/88 (15%)
Query: 132 QDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPS 191
+ + S +S A P A E +P + + +
Sbjct: 464 DERDAQPPADSGSASAPASDAPPDA-------AFEPAPRAAAPSAATPAAVPDARAPAAA 516
Query: 192 PRPQTPSPPPDCPEPSNLSLKEDRSPSP 219
R P+ P P E R P+P
Sbjct: 517 SREDAPAAAAP-PAP------EARPPTP 537
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 29.5 bits (66), Expect = 2.1
Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 21/76 (27%)
Query: 189 TPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRI-PSPLSG 247
SP + +P PD P+P DR P P + P PSP S
Sbjct: 385 AGSPDVKKKAPEPDLPQP-------DRHPGP----------AKPEAPGARPAELPSPASA 427
Query: 248 EPVPGPSGLPPVQQVP 263
P P PPV +
Sbjct: 428 ---PTPEQQPPVARSA 440
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 29.7 bits (67), Expect = 2.2
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 4/87 (4%)
Query: 169 PPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSM 228
P ++ + RL + + P +P P P +P P
Sbjct: 362 APGAPVSELLDRLEALERGAPAPPSAAWGAPTPAAPAAP----PPAAAPPVPPAAPARPA 417
Query: 229 QSGPSDMTLNSRIPSPLSGEPVPGPSG 255
+ P+ +P + P +
Sbjct: 418 AARPAPAPAPPAAAAPPARSADPAAAA 444
>gnl|CDD|140276 PTZ00249, PTZ00249, variable surface protein Vir28; Provisional.
Length = 516
Score = 29.2 bits (65), Expect = 2.4
Identities = 33/129 (25%), Positives = 40/129 (31%), Gaps = 12/129 (9%)
Query: 143 PSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPD 202
+ S A PP H + PPV +SS P PP
Sbjct: 228 HAHRRISGEARPPKHISFSSPHAHGRPPVETRPPNPVSVSSPQAHGRH---PGETHTPPL 284
Query: 203 CPEPSNLSLKEDR----SPSPPDVDDVSSMQSG---PSDMTLNSRIPSPLSGEPVPGPSG 255
PS S DR +P+P V SS G + P P+P P
Sbjct: 285 VTVPS--SKAHDRNPVQTPTPTSVSGYSSQAKGLEKQAGGESERTSSVPSEQFPLPLPVL 342
Query: 256 LPPVQQVPL 264
LP Q PL
Sbjct: 343 LPLGQSGPL 351
>gnl|CDD|165432 PHA03161, PHA03161, hypothetical protein; Provisional.
Length = 150
Score = 28.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 116 LKTAESLKVKGLAEMTQDLSTRSRT---APPSQENESSSAEPPAHSTALQQRLEASPPVI 172
L AE L+ K + E+ +D+ PS + E +S+E T +Q R+EA P V
Sbjct: 88 LSAAEDLQDK-ILELKEDIHFEIEALNHGQPSSQEEENSSENSIPDTIMQWRIEALPRVP 146
Query: 173 ELT 175
T
Sbjct: 147 SAT 149
>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1,
2, 3, 4 family. These eukaryotic proteins recognize the
poly-A of mRNA and consists of four tandem RNA
recognition domains at the N-terminus (rrm: pfam00076)
followed by a PABP-specific domain (pfam00658) at the
C-terminus. The protein is involved in the transport of
mRNA's from the nucleus to the cytoplasm. There are four
paralogs in Homo sapiens which are expressed in testis
(GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ),
broadly expressed (SP:P11940_PABP1) and of unknown
tissue range (SP:Q15097_PABP2).
Length = 562
Score = 29.0 bits (65), Expect = 3.0
Identities = 24/139 (17%), Positives = 36/139 (25%), Gaps = 8/139 (5%)
Query: 127 LAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDE 186
L + L R R P + +PP + QQ+ P +
Sbjct: 371 LQDQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRM--SMMPTPM-- 426
Query: 187 RNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLS 246
RP +P PS + + P V + QS P L +
Sbjct: 427 GPGGPLRPNGLAPMNAVRAPSRNAQNAAQKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQ 486
Query: 247 GEPVPGPS----GLPPVQQ 261
G + P Q
Sbjct: 487 GGQNKKLAQVLASATPQMQ 505
>gnl|CDD|226435 COG3921, COG3921, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 300
Score = 28.6 bits (64), Expect = 3.3
Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 21/110 (19%)
Query: 141 APPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKR-----------RLSSEDERNT 189
P+Q ++ +A P A P + KR R SS D+ T
Sbjct: 7 PRPTQAAKADAATVPEQDVMPG----AEPVSGQANEQKRIAEEAHPQPVARPSSTDDPVT 62
Query: 190 PSP-RPQTP-SPPPDCPEPSNLSLKEDRSPS----PPDVDDVSSMQSGPS 233
P+ +P P P L + P D + S P+
Sbjct: 63 PTEGKPVRPKGLPILALAGPVGELGQPMDLPAPANPGDPLALPEPPSPPT 112
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the
mating type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi
have evolved a unique mating system, termed tetrapolar
or bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is
thus unique to the mushroom fungi. This domain is
C-terminal to the homeodomain transcription factor
region.
Length = 418
Score = 29.0 bits (65), Expect = 3.4
Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 4/95 (4%)
Query: 131 TQDLSTRSRTAPPSQENESSSAEPPA----HSTALQQRLEASPPVIELTTIKRRLSSEDE 186
T R S ++ AE P+ + A PP L + E
Sbjct: 99 LASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSISSSSSPAKPPEACLPSPAASTQDELS 158
Query: 187 RNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPD 221
+ +P P PP P + S K R S
Sbjct: 159 EASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDGF 193
>gnl|CDD|234977 PRK01741, PRK01741, cell division protein ZipA; Provisional.
Length = 332
Score = 28.9 bits (65), Expect = 3.4
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDER---NTPSPRPQT 196
T PP + + + +QQ +E S + IK L +++ P
Sbjct: 69 TTPPPFQQPQTEESESENEVQIQQEVEQS-----VDEIKITLPNQEPAYYMQNHRSEPIQ 123
Query: 197 PSPPPDCPEPSN----LSLKEDRSPSPPD 221
P+ P ++++E +SP+ P
Sbjct: 124 PTQPQYQSPTQTNVASMTIEETQSPNVPI 152
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 29.0 bits (65), Expect = 3.5
Identities = 15/117 (12%), Positives = 36/117 (30%), Gaps = 17/117 (14%)
Query: 163 QRLEASPPVIELTTIK-RRLSSEDERNTPSPRPQ-----------TPSPPPDCPEPSNLS 210
+RL ++ELT I+ +L+ + + + P+ P S
Sbjct: 348 KRL-----LVELTLIQLAQLTQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSP 402
Query: 211 LKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIA 267
+ + P + P ++++ P++ + P + I
Sbjct: 403 SQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459
>gnl|CDD|188659 cd07440, RGS, Regulator of G protein signaling (RGS) domain
superfamily. The RGS domain is an essential part of
the Regulator of G-protein Signaling (RGS) protein
family, a diverse group of multifunctional proteins
that regulate cellular signaling events downstream of
G-protein coupled receptors (GPCRs). RGS proteins play
critical regulatory roles as GTPase activating proteins
(GAPs) of the heterotrimeric G-protein
G-alpha-subunits. While inactive, G-alpha-subunits bind
GDP, which is released and replaced by GTP upon agonist
activation. GTP binding leads to dissociation of the
alpha-subunit and the beta-gamma-dimer, allowing them
to interact with effectors molecules and propagate
signaling cascades associated with cellular growth,
survival, migration, and invasion. Deactivation of the
G-protein signaling controlled by the RGS domain
accelerates GTPase activity of the alpha subunit by
hydrolysis of GTP to GDP, which results in the
reassociation of the alpha-subunit with the
beta-gamma-dimer and thereby inhibition of downstream
activity. As a major G-protein regulator, RGS domain
containing proteins are involved in many crucial
cellular processes such as regulation of intracellular
trafficking, glial differentiation, embryonic axis
formation, skeletal and muscle development, and cell
migration during early embryogenesis. RGS proteins are
also involved in apoptosis and cell proliferation, as
well as modulation of cardiac development. Several RGS
proteins can fine-tune immune responses, while others
play important roles in neuronal signals modulation.
Some RGS proteins are principal elements needed for
proper vision.
Length = 113
Score = 27.4 bits (61), Expect = 3.7
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 25 HQNNLLGVFSQLL---HDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHP 81
L F Q L H E ++ LA + + L + + +I +
Sbjct: 2 RDPYGLEYFRQFLKSEHCEENLEFWLAVEKFKKTTSSDEELKSKAKEIYDKYISKDAPKE 61
Query: 82 IVI 84
I I
Sbjct: 62 INI 64
>gnl|CDD|216399 pfam01265, Cyto_heme_lyase, Cytochrome c/c1 heme lyase.
Length = 239
Score = 28.5 bits (64), Expect = 3.9
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 188 NTPSPRPQTPSPPPDCP-EPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLS 246
T + SPPP CP + S ++P+PP SS P D + +PL+
Sbjct: 8 PTEPAEASSASPPPKCPVDHKTRSAWLKQAPAPPSSAPPSSC---PVDHKSDLSDLNPLN 64
Query: 247 GEPVPGPSGLPPVQQVPL 264
P P P Q V L
Sbjct: 65 NMPPPPNQSPAPDQPVDL 82
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 28.7 bits (64), Expect = 3.9
Identities = 12/97 (12%), Positives = 24/97 (24%), Gaps = 4/97 (4%)
Query: 167 ASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVS 226
A+ PV + ++ P+ P P+ P + SP +
Sbjct: 378 AAAPVAQPAPAAAAPAAAAPA--PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
Query: 227 SMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVP 263
+ Q+ + P + P
Sbjct: 436 ARQASARGPGGAPAPAP--APAAAPAAAARPAAAGPR 470
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 28.4 bits (64), Expect = 4.2
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 188 NTPSPRPQTPSPPPDCPEPSNLSLKEDR----SPS--PPDVDDVSS--MQSGP 232
P P TP P C + + +ED+ S P D D+ M +GP
Sbjct: 104 EGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGP 156
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 28.7 bits (64), Expect = 4.4
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 8/98 (8%)
Query: 166 EASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPP----- 220
+ E+ +K RL++ + + P+ + P + K+ +
Sbjct: 1255 KEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVISDSD 1314
Query: 221 DVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPP 258
D DD +++ ++ P + PP
Sbjct: 1315 DDDDDFAVEVSLAERLKKKGGRKPAAANKKAAK---PP 1349
>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL;
Provisional.
Length = 510
Score = 28.6 bits (63), Expect = 4.5
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 190 PSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDM--TLNSRI---PSP 244
PS P P D + L +K D P+ D V++ +S D+ TLN I +P
Sbjct: 348 PSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDLIGALDTP 407
Query: 245 LSGEP 249
+SG+P
Sbjct: 408 ISGDP 412
>gnl|CDD|221518 pfam12301, CD99L2, CD99 antigen like protein 2. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 165 and 237 amino acids in length.
CD99L2 and CD99 are involved in trans-endothelial
migration of neutrophils in vitro and in the recruitment
of neutrophils into inflamed peritoneum.
Length = 154
Score = 27.8 bits (62), Expect = 4.6
Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 5/49 (10%)
Query: 184 EDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGP 232
+D P+ +P TP P + +L D + + P
Sbjct: 9 DDPAMKPTKKPATPKKPSKGDDDFDLE-----DALDGGNDGGAGPKPKP 52
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase
(carboxylating).
Length = 308
Score = 28.1 bits (63), Expect = 4.9
Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 185 DERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMT 236
P P D L+L ED D DV+ + + P DM
Sbjct: 1 MAAEMAMAIPPPSHPTYDIEAVIKLALAED----AGDRGDVTCLATIPGDME 48
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins
(FAP). Family members are rich in alanine and proline,
are approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 28.3 bits (63), Expect = 4.9
Identities = 16/68 (23%), Positives = 23/68 (33%)
Query: 190 PSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEP 249
P+P P PS P P+ + P D + P N+ P P+
Sbjct: 41 PAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNA 100
Query: 250 VPGPSGLP 257
P P+ P
Sbjct: 101 PPPPAPEP 108
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has
been accumulated to support the idea that neural
proteoglycans are involved in various cellular events
including mitogenesis, differentiation, axonal outgrowth
and synaptogenesis. This domain contains several
potential sites of chondroitin sulphate attachment, as
well as potential sites of N-linked glycosylation.
Length = 253
Score = 28.0 bits (62), Expect = 5.0
Identities = 34/171 (19%), Positives = 52/171 (30%), Gaps = 30/171 (17%)
Query: 119 AESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTAL-------QQRLEASPPV 171
AE A + TR P+ ++ +S E A ++ LEAS V
Sbjct: 12 AEGAVSSVPAWEDRANDTREGAGGPAAGDDETSPEEVGSEEAPVGPGVGPEEGLEASAAV 71
Query: 172 IE----------LTTIKRRLSSEDERNTPSPRPQ------TPSPPPDCPEPSNLSLKEDR 215
L + S D + P+ P +P PE + S
Sbjct: 72 TPTAWLEASSPGLGGVTAEAGSGDSQGLPATLPTPDEALGNSNPSLALPEATEAS----N 127
Query: 216 SPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTI 266
PSP D S + P + + + S P P+ P T+
Sbjct: 128 PPSPGPGDKPSLLPELPKESPVEVWLNLGGS---TPDPAAPEPTSPAQGTL 175
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 28.2 bits (63), Expect = 5.2
Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 9/107 (8%)
Query: 134 LSTRSRTAPPSQEN------ESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDER 187
L + RT Q E+ PA A + A PV R +
Sbjct: 337 LDFQLRTTSYGQLPLELAVIEALLVPVPAPQPA-KPTAAAPSPVRPTPAPSTRPKAAAAA 395
Query: 188 NTPS--PRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGP 232
N P P +T +PPP P P + +P + P
Sbjct: 396 NIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKP 442
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 28.4 bits (63), Expect = 5.3
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 189 TPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGE 248
TP P P+T + P P PS + + P + + P+P GE
Sbjct: 207 TPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGE 266
Query: 249 PVPGPSG-LPPVQQVPLTIAKVI 270
P + P + LT+ ++I
Sbjct: 267 APPANATPAPEASRYELTVTQII 289
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 28.3 bits (63), Expect = 5.4
Identities = 25/127 (19%), Positives = 34/127 (26%), Gaps = 14/127 (11%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSP 199
T PS E + P A T+ + E R ++D + Q P+
Sbjct: 87 TVDPSAG-EPAPPPPHARRTSEPELPRPGRRPYEGYGGPR---ADDRPPGLPRQDQLPTA 142
Query: 200 PPDCPEPSNLSLKEDRSPSP---PDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGL 256
P P + P P P D Q + SP S P
Sbjct: 143 RPAYPA-------YQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDRE 195
Query: 257 PPVQQVP 263
P P
Sbjct: 196 PYDAGRP 202
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 28.1 bits (63), Expect = 5.7
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 191 SPR----PQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTL 237
+PR P P PP + P P ++D P + + + ++ L
Sbjct: 252 APRATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVL 302
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 28.3 bits (63), Expect = 5.7
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 138 SRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTP 197
+ T+P ++ S+E S++ ++ + SP + T + + R S RP +
Sbjct: 229 TTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPET-RESSKRTETRPRTSLRPPSA 287
Query: 198 SPPPDCPEP 206
P P P
Sbjct: 288 RPASARPAP 296
>gnl|CDD|235559 PRK05684, flgJ, flagellar rod assembly protein/muramidase FlgJ;
Validated.
Length = 312
Score = 27.9 bits (63), Expect = 5.9
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 16/74 (21%)
Query: 216 SPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSG--------LPPVQQVPLTIA 267
P D++ V S Q+ + IP P P PP Q+ A
Sbjct: 112 VPMKFDLETVQSYQNQALAQLVRKAIPQPPLASDKPLFGSSDDFVARLSPPAQKA----A 167
Query: 268 KVIGLQNTGCHHFI 281
+ G+ HH +
Sbjct: 168 QQSGVP----HHLL 177
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 28.3 bits (63), Expect = 6.0
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 139 RTAPPSQENESS--SAEPPAHSTALQQRLEASPPVIELTTIKRRLSSE-DERNTPSPRPQ 195
RT PP ++S S P S+ ++ + P E +++ SS R T P+
Sbjct: 208 RTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSP 267
Query: 196 TPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSG 255
+PP D E + SP + ++ S+ + PS ++ PSP + P P S
Sbjct: 268 EKAPPIDTTE----EELKSPEASPKESEEASARKRSPSLLS-----PSPKAESPKPLASP 318
Query: 256 LPPVQQVPLTIAK 268
+ K
Sbjct: 319 GKSPRDPLSPRPK 331
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog;
Provisional.
Length = 606
Score = 28.2 bits (63), Expect = 6.6
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 118 TAESLKVKGLAEMTQDLSTRSRTAPPSQENES 149
TA+SL V+ L E+ + S R TA PS E S
Sbjct: 558 TADSLTVESLLELLDEESLRKDTALPSPEWSS 589
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 27.7 bits (62), Expect = 7.2
Identities = 13/78 (16%), Positives = 23/78 (29%)
Query: 188 NTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSG 247
T P P P+N + P VD + PS +++ +
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAA 227
Query: 248 EPVPGPSGLPPVQQVPLT 265
P + P Q ++
Sbjct: 228 PATPDGAAPLPTDQAGVS 245
>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein.
Length = 753
Score = 27.8 bits (62), Expect = 7.7
Identities = 19/145 (13%), Positives = 29/145 (20%), Gaps = 21/145 (14%)
Query: 113 STLLKTAESLKVKGLAEMTQDLS-TRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPV 171
+ + V A D + P + R + P
Sbjct: 627 VGEMIISGFPPVFKTALPRPDYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPT 686
Query: 172 IELTTIKRRLSSEDERNTPSPR-PQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQS 230
+ + R PQ P P L D + SS+ +
Sbjct: 687 ---------------AHHAALRAPQAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIA 731
Query: 231 GPSDMTLNSRIPSPLSGEPVPGPSG 255
P P E G
Sbjct: 732 -SPTAPP---EPEPPGAEQADGAEN 752
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 27.6 bits (61), Expect = 7.9
Identities = 9/56 (16%), Positives = 15/56 (26%)
Query: 166 EASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPD 221
EA P + + T +P + +P P + R P
Sbjct: 13 EAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPK 68
>gnl|CDD|223064 PHA03375, PHA03375, hypothetical protein; Provisional.
Length = 844
Score = 27.9 bits (62), Expect = 8.7
Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 3/84 (3%)
Query: 126 GLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTA---LQQRLEASPPVIELTTIKRRLS 182
G T LS +A P SS + S++ +S P I RLS
Sbjct: 374 GGRPRTARLSAPPPSAAPPVPRSGSSPSSLSSSSSSAPPPATDPSSDPTRRYVRIISRLS 433
Query: 183 SEDERNTPSPRPQTPSPPPDCPEP 206
R R P+ P
Sbjct: 434 FVRYRERLRRRAADPAFDFTPQRP 457
>gnl|CDD|218908 pfam06136, DUF966, Domain of unknown function (DUF966). Family of
plant proteins with unknown function.
Length = 308
Score = 27.4 bits (61), Expect = 9.0
Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 17/122 (13%)
Query: 125 KGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASP---PVIELTTIKRRL 181
KG + S S++ + S PP + A Q + V +
Sbjct: 84 KGSEILDSSSSKGDPEEASSRKLQEESDTPPVNRRANQSWSSSDLAEYKVYKAEEPADAS 143
Query: 182 SSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRI 241
+ D+R + E + LS +E SPP S S S TL S I
Sbjct: 144 TQTDDRRSRDSSEA---------ESTELSREE---ISPPSSSSSPS--SSSSPETLESLI 189
Query: 242 PS 243
+
Sbjct: 190 KA 191
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 27.6 bits (61), Expect = 9.3
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 187 RNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLS 246
R T S Q+P+P +PS+ LK + +PP + + P + ++++ SPL
Sbjct: 13 RETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAKLKSPLP 72
Query: 247 GEPVPGPS 254
P P S
Sbjct: 73 --PRPPSS 78
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 27.5 bits (61), Expect = 9.5
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 11/96 (11%)
Query: 108 EYCQLSTLLKTAESLKVKGLAEMTQDLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEA 167
EYC L +A+++ V L E P S + A +
Sbjct: 365 EYCCRRELTVSADTIVVSILEEALASKFVFFEVIKPLPTETGSDSWVEASFPVGHKYSGT 424
Query: 168 SPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDC 203
P S + P P P +C
Sbjct: 425 EQP-----------SCSAPKEPEEELPAEPRPIDEC 449
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.130 0.385
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,134,244
Number of extensions: 1303265
Number of successful extensions: 1767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 221
Length of query: 287
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 191
Effective length of database: 6,679,618
Effective search space: 1275807038
Effective search space used: 1275807038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.1 bits)