RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5386
(287 letters)
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 97.3 bits (243), Expect = 1e-25
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 12 DMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQS 71
+GS Y H N+L + + L DVTL E RAH+ VL+ACS YF
Sbjct: 2 PLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTL-IVERKEFRAHRAVLAACSEYFWQ 60
Query: 72 LFIDHPSRHP-IVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ + + ++V L++F Y ++ + + +++ AE L++ L +
Sbjct: 61 ALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 95.7 bits (239), Expect = 5e-25
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 14 GSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLF 73
GS +++ H +++L ++L + L DV + RAHK VL ACS F S+F
Sbjct: 1 GSADSQIQFTRHASDVLLNLNRLRSRDILTDVVI-VVSREQFRAHKTVLMACSGLFYSIF 59
Query: 74 IDHP--SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
D + I + ++ L++FMY +N+ + ++ TA L+++ + +
Sbjct: 60 TDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 94.2 bits (235), Expect = 2e-24
Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 23 NNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPI 82
++H +LL ++ L D T+ +AH+ VL++ S YF +++ +
Sbjct: 3 SHHCEHLLERLNKQREAGFLCDCTI-VIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF 61
Query: 83 VILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ V + L+EF+Y G +N++ + + + A+ LKV+ +
Sbjct: 62 LDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 92.7 bits (231), Expect = 8e-24
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 21 RWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP-SR 79
+ H N+L + + L DVT+ EG RAH+ VL+ACSSYF S +
Sbjct: 8 ESSVHSTNVLLSLNDQRKKDVLCDVTI-FVEGQRFRAHRSVLAACSSYFHSRIVGQADGE 66
Query: 80 HPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAE 129
I + ++V LI+F Y ++ + + + K E L V + E
Sbjct: 67 LNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEE 116
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 91.9 bits (229), Expect = 2e-23
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFI 74
S + + H N+L + + L DVT+ EG RAH+ VL+ACSSYF S +
Sbjct: 9 SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTV-LVEGQRFRAHRSVLAACSSYFHSRIV 67
Query: 75 DHP-SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAE 129
+ + + ++V LI+F Y ++ + + + + E L V + E
Sbjct: 68 GQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEE 123
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 91.5 bits (228), Expect = 2e-23
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 3/114 (2%)
Query: 19 CLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP- 77
+ + +H +++L ++ L DV + EG H+ VL+ACS YF+ LF
Sbjct: 2 GIPFPDHSSDILSGLNEQRTQGLLCDVVI-LVEGREFPTHRSVLAACSQYFKKLFTSGAV 60
Query: 78 -SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ + + V L L++F Y + V + +L A L++ ++ +
Sbjct: 61 VDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 90.7 bits (226), Expect = 4e-23
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)
Query: 13 MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSL 72
MG +H LL +Q+ +L DV + + AH+ VL+ S F+ L
Sbjct: 1 MGMIQLQN--PSHPTGLLCKANQMRLAGTLCDVVI-MVDSQEFHAHRTVLACTSKMFEIL 57
Query: 73 FIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAE 129
F L + + ++E+ Y + + L LL AE L+++ L E
Sbjct: 58 F---HRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEE 111
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 90.0 bits (224), Expect = 7e-23
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 24 NHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIV 83
H ++L +Q L D T +G +AHK VL+ACS YF+ LF+D V
Sbjct: 9 QHSQHVLEQLNQQRQLGLLCDCTF-VVDGVHFKAHKAVLAACSEYFKMLFVDQKDV---V 64
Query: 84 ILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
L + L ++EFMY ++++ + +L A L+++ +
Sbjct: 65 HLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 88.5 bits (220), Expect = 4e-22
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 3/107 (2%)
Query: 23 NNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPI 82
+ H +L ++ D TL G +AH VL+ CS +FQ ++ D
Sbjct: 6 SGHSVRVLQELNKQREKGQYCDATL-DVGGLVFKAHWSVLACCSHFFQRIYGD--GTGGS 62
Query: 83 VILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAE 129
V+L L++F Y G + + +L A+ L+V E
Sbjct: 63 VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVE 109
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 87.7 bits (218), Expect = 6e-22
Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 22 WNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHP 81
+ H +L ++ D TL G +AH VL+ CS +FQSL+ D
Sbjct: 4 FVQHSVRVLQELNKQREKGQYCDATL-DVGGLVFKAHWSVLACCSHFFQSLYGD--GSGG 60
Query: 82 IVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
V+L L++F Y G + + +L A L+V E+
Sbjct: 61 SVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 86.6 bits (215), Expect = 1e-21
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 5/109 (4%)
Query: 23 NNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPI 82
+ +LL ++ DVT+ E RAHK +LSA S+YF LF +
Sbjct: 12 IQYSGSLLNSLNEQRGHGLFCDVTV-IVEDRKFRAHKNILSASSTYFHQLFS---VAGQV 67
Query: 83 VILKDVCFSELRTLIEFMYRGE-VNVEYCQLSTLLKTAESLKVKGLAEM 130
V L + ++ ++Y + V V L L+K+ + L VK +A +
Sbjct: 68 VELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 87.4 bits (217), Expect = 1e-21
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 10 DTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYF 69
++ + + H LL S + D L +G I K +L+A S Y
Sbjct: 15 TENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHL-VLDGEEIPVQKNILAAASPYI 73
Query: 70 QSLFIDHP----SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTA 119
++ +P + L+ + +R ++++++ G++ + + +++ A
Sbjct: 74 RTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAA 127
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 86.6 bits (215), Expect = 2e-21
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFI 74
++ + N N++L ++ DV++ +GH+ +AH+ VL+A SSYF+ LF
Sbjct: 6 AQTLQMEIPNFGNSILECLNEQRLQGLYCDVSV-VVKGHAFKAHRAVLAASSSYFRDLFN 64
Query: 75 DHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ S + + V + ++ F Y G +++ L+ TA L+++ + E
Sbjct: 65 NSRSAV-VELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 88.4 bits (220), Expect = 7e-21
Identities = 21/120 (17%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 15 SEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFI 74
+E + H LL S + D L +G I K +L+A S Y ++
Sbjct: 4 AEGSAVSDPQHAARLLRALSSFREESRFCDAHL-VLDGEEIPVQKNILAAASPYIRTKLN 62
Query: 75 DHP----SRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+P + L+ + +R ++++++ G++ + + +++ A+ L + L +
Sbjct: 63 YNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 82.3 bits (204), Expect = 1e-18
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 13 MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACS--EGHSIRAHKVVLSACSSYFQ 70
M +E + ++H + L ++ D+TL G RAH+ VL+A + YF
Sbjct: 5 MEAEDFE--CSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFT 62
Query: 71 SLF-IDHP-SRHPIVILKD------VCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESL 122
L SR V ++ + +IE+MY G + V + +L+ A+
Sbjct: 63 PLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRF 122
Query: 123 KVKGLAEM 130
+ L E
Sbjct: 123 LLIRLKEF 130
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 76.5 bits (189), Expect = 7e-18
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 36 LLHDESLVDVTL---ACSEGHSIRAHKVVLSACSSYFQSLFIDHP---SRHPIVILKDVC 89
+ ++E + DV ++ AHK VL+ SS F ++F + I I DV
Sbjct: 2 MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMF-YGDLAEVKSEIHI-PDVE 59
Query: 90 FSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ L+++MY E+++E + L A+ V LA+
Sbjct: 60 PAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 75.4 bits (186), Expect = 2e-17
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 9/107 (8%)
Query: 23 NNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPI 82
+ + ++ L + L L D + AH +VL+ S
Sbjct: 12 SPYGSDRLVQLAARLRPA-LCDTLI-TVGSQEFPAHSLVLAGVSQQLGRRG-------QW 62
Query: 83 VILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAE 129
+ + + S L+ F+Y V ++ +L L + A +L V+ L E
Sbjct: 63 ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEE 109
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 75.3 bits (186), Expect = 4e-17
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Query: 28 NLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP---SRHPIVI 84
L L + D L C G +AHK +L+A S F ++F +H S+ V
Sbjct: 11 RLADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSAMF-EHEMEESKKNRVE 68
Query: 85 LKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ DV + ++ F+Y G+ LL A+ ++ L M
Sbjct: 69 INDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 114
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 75.8 bits (187), Expect = 5e-17
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)
Query: 28 NLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP---SRHPIVI 84
L L + D L G +AHK +L+A S F ++F +H S+ V
Sbjct: 20 RLADELGGLWENSRFTDCCLCV-AGQEFQAHKAILAARSPVFSAMF-EHEMEESKKNRVE 77
Query: 85 LKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEM 130
+ DV + ++ F+Y G+ LL A+ ++ L M
Sbjct: 78 INDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 123
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 71.8 bits (176), Expect = 1e-14
Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 5/112 (4%)
Query: 25 HQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHP---SRHP 81
+ L L + D L C G +AHK +L+A S F ++F +H S+
Sbjct: 157 PECRLADELGGLWENSRFTDCCL-CVAGQEFQAHKAILAARSPVFSAMF-EHEMEESKKN 214
Query: 82 IVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQD 133
V + DV + ++ F+Y G+ LL A+ ++ L M +D
Sbjct: 215 RVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCED 266
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 2e-06
Identities = 59/362 (16%), Positives = 101/362 (27%), Gaps = 125/362 (34%)
Query: 6 YLG------RDTDMGSEHYCLRWNNHQNNLLGVF-SQLLHDE---SLVDVTLACSEGHSI 55
+LG + +G L L F + L +L L ++
Sbjct: 64 FLGYVSSLVEPSKVGQFDQVLN------LCLTEFENCYLEGNDIHALA-AKLLQENDTTL 116
Query: 56 RAHKVVLSACSSYFQSL-FIDHP--SRHPIVILK-------------------DVCFSEL 93
K ++ Y + P + + + D F EL
Sbjct: 117 VKTKELIKN---YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL 173
Query: 94 RTLIEFMYRGEVN--VEYC--QLSTLLKT---AESLKVKGLAEMTQDLST--RSRTAPPS 144
R L + Y V +++ LS L++T AE + +GL ++ + + P
Sbjct: 174 RDLYQ-TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NILEWLENPSNTPD 227
Query: 145 QENESSSAEP---P-------AHSTALQQRLEASPPVIE-----LTTIKRRL-------- 181
++ S P P AH + L +P + T + L
Sbjct: 228 KDYLLSI--PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 182 -SSEDE--RNTPSP---------RPQTPSPPPDCPEPSNLSLKEDR---SPSPPDVDDVS 226
S + + R P P PS L + PSP
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSP------- 337
Query: 227 SMQS--GPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVPLTIAKVIGLQNTGCHHFI--S 282
M S + + + + + LP +QV I L N G + +
Sbjct: 338 -MLSISNLTQEQVQDYV-NKTNSH-------LPAGKQV------EISLVN-GAKNLVVSG 381
Query: 283 HP 284
P
Sbjct: 382 PP 383
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 4e-04
Identities = 23/177 (12%), Positives = 48/177 (27%), Gaps = 44/177 (24%)
Query: 24 NHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSRHPIV 83
LL S K+ + + + + L P + ++
Sbjct: 200 EMLQKLLYQIDPNW-----------TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 84 ILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKT-----AESLKVKGLAEMTQDLSTRS 138
+L +V + F N+ C+ LL T + L ++ D + +
Sbjct: 249 VLLNVQ--NAKAWNAF------NLS-CK--ILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 139 RTAPPSQE------NESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNT 189
T + + P + L +P + + I + D T
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPR-------EVLTTNPRRLSI--IAESIR--DGLAT 343
Score = 33.3 bits (75), Expect = 0.10
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 38/186 (20%)
Query: 3 QHTYLGRDTDMGSEHYCLRWNNHQNNLLGVFSQ-LLHDESLVDVTLACSEGHSIRAHKVV 61
H + D + G Y + ++L VF + + C + V
Sbjct: 1 HHHHHHMDFETGEHQYQYK------DILSVFEDAFVDN-------FDCKD---------V 38
Query: 62 LSACSSYFQSLFIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAES 121
S IDH I++ KD S L + + + + +L+
Sbjct: 39 QDMPKSILSKEEIDH-----IIMSKDA-VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 122 LKVKGLAEMTQDLSTRSRTAPPSQENESSSAE--PPAHSTALQQRLEASPPVIELTTIKR 179
+ + + S +R ++ + + + + RL+ P ++L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----RLQ---PYLKLRQALL 145
Query: 180 RLSSED 185
L
Sbjct: 146 ELRPAK 151
Score = 31.7 bits (71), Expect = 0.28
Identities = 22/152 (14%), Positives = 47/152 (30%), Gaps = 35/152 (23%)
Query: 10 DTDMGSEHYCLRWNNHQNNLLGVFSQLLHDESLVD--------------VTLACSEGHSI 55
+ + L W + + + V LH SLV+ + L +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 56 RAHKVVLSA-------CSSYFQSLFID-----HPSRHPIVILKDVCFSELRTLIEFMYRG 103
H+ ++ S ++D H H LK++ E TL ++
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH----LKNIEHPERMTLFRMVF-- 497
Query: 104 EVNVEYCQLSTLLKTAESLKVKG-LAEMTQDL 134
++ + + + + + G + Q L
Sbjct: 498 -LDFRFLE-QKIRHDSTAWNASGSILNTLQQL 527
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 35.1 bits (80), Expect = 0.023
Identities = 18/115 (15%), Positives = 28/115 (24%), Gaps = 9/115 (7%)
Query: 149 SSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSN 208
SS S + + P +T+ + P P P PP
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP- 61
Query: 209 LSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPVQQVP 263
+ + + GP+ S P+ G PGP
Sbjct: 62 -------PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYG-RQPGPEAPASAPPAA 108
Score = 29.0 bits (64), Expect = 2.0
Identities = 10/78 (12%), Positives = 16/78 (20%), Gaps = 1/78 (1%)
Query: 189 TPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGE 248
PR P + P D P+ + +
Sbjct: 13 GLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQ 72
Query: 249 PV-PGPSGLPPVQQVPLT 265
+ GP+G P
Sbjct: 73 RILRGPTGPGTTSLAPAV 90
>2wvr_C DNA replication factor CDT1; DNA replication license, DNA
replication inhibitor, phosphoprotein, UBL conjugation,
DNA-binding, polymorphism; HET: DNA; 3.30A {Homo
sapiens} PDB: 2klo_A*
Length = 546
Score = 31.6 bits (70), Expect = 0.28
Identities = 21/129 (16%), Positives = 36/129 (27%)
Query: 135 STRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRP 194
+ +R A + + +S + A A R +A PP + S P
Sbjct: 30 PSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPSTPEAPDIP 89
Query: 195 QTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPS 254
PSP + + + + S D D +S + S L
Sbjct: 90 ACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRARELGARVRALKASAQDAGE 149
Query: 255 GLPPVQQVP 263
P +
Sbjct: 150 SCTPEAEGR 158
Score = 31.2 bits (69), Expect = 0.41
Identities = 15/129 (11%), Positives = 30/129 (23%), Gaps = 1/129 (0%)
Query: 133 DLSTRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSP 192
D R R PP + P+ + + ++ + ++ P
Sbjct: 8 DFFARRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPA-APGRDQARPPA 66
Query: 193 RPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPG 252
R + + PS + + P S + L S E
Sbjct: 67 RRRLRLSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASC 126
Query: 253 PSGLPPVQQ 261
+
Sbjct: 127 LQRARELGA 135
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 29.8 bits (66), Expect = 0.89
Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 1/124 (0%)
Query: 135 STRSRTAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRP 194
S + P + + + P + LQ+ ++E+ K L +
Sbjct: 199 SRDIQYLPILKMSTITGPVPREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDS 258
Query: 195 QTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPS 254
+ P + +P SS P + G P PG +
Sbjct: 259 VSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPG-RPEPGSAGTWNPGRPEPGSA 317
Query: 255 GLPP 258
G
Sbjct: 318 GTWN 321
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 29.7 bits (66), Expect = 1.0
Identities = 18/124 (14%), Positives = 32/124 (25%)
Query: 140 TAPPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSP 199
P + S + PA Q PV+E + + P P
Sbjct: 27 ELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKP 86
Query: 200 PPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPPV 259
P + + R P + S ++ +S + S SG +
Sbjct: 87 KPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRAL 146
Query: 260 QQVP 263
+
Sbjct: 147 SRNQ 150
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 28.6 bits (63), Expect = 1.8
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 167 ASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVS 226
E R + S++ N P P P T L+ SP P +
Sbjct: 89 VDRETDEFFKKCRVIPSQEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPA----LV 144
Query: 227 SMQSGPSDMTLNSRIPSPLSGEPVPGPSGLP-PVQQVPLTIA 267
S + LNS+ P P + P+ +++A
Sbjct: 145 RSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLA 186
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane
protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP:
c.30.1.5 d.142.1.3 PDB: 1px2_A*
Length = 422
Score = 28.7 bits (63), Expect = 2.4
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 22/121 (18%)
Query: 177 IKRRLSSED----------------ERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPP 220
++RRLS + + P P +P P S + P
Sbjct: 5 LRRRLSDSNFMANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASP 64
Query: 221 DVDDVSSMQSGPSDMTLNSRIPSPLS------GEPVPGPSGLPPVQQVPLTIAKVIGLQN 274
S G +L++ + + E V G SG + VI +
Sbjct: 65 AAPSPGSSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVIDEPH 124
Query: 275 T 275
T
Sbjct: 125 T 125
>2bii_A Nitrate reductase [NADPH]; FAD, flavoprotein, heme, molybdenum,
nitrate assimilation, oxidoreductase; HET: MTV; 1.70A
{Pichia angusta}
Length = 424
Score = 28.2 bits (63), Expect = 3.1
Identities = 7/57 (12%), Positives = 15/57 (26%), Gaps = 11/57 (19%)
Query: 199 PPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSG 255
P PE + + + D+ L + I P + + +
Sbjct: 216 PTMVTPEMAKSDDRWWKDERYA-----------IYDLNLQTIICKPENQQVIKISED 261
>2bih_A Nitrate reductase [NADPH]; flavoprotein, nitrate assimilation,
oxidoreductase; HET: MTV; 2.60A {Pichia angusta}
Length = 474
Score = 28.3 bits (63), Expect = 3.4
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 217 PSPPDVDDVSSMQSGPS--DMTLNSRIPSPLSGEPVPGPSG 255
P DD + D+ L + I P + + +
Sbjct: 271 PEMAKSDDRWWKDERYAIYDLNLQTIICKPENQQVIKISED 311
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase,
membrane traffic, coiled coil, exocytosis,
phosphoprotein; HET: GNP; 2.60A {Saccharomyces
cerevisiae}
Length = 320
Score = 28.0 bits (61), Expect = 3.9
Identities = 12/82 (14%), Positives = 19/82 (23%)
Query: 173 ELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGP 232
+R N P SP + + S+ +P + S +S
Sbjct: 235 LFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVN 294
Query: 233 SDMTLNSRIPSPLSGEPVPGPS 254
T S P
Sbjct: 295 PVSTPASVEYHAGMKSLNKAPY 316
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 27.6 bits (61), Expect = 5.1
Identities = 9/32 (28%), Positives = 10/32 (31%)
Query: 226 SSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLP 257
SS P L +PG GLP
Sbjct: 6 SSGSETPDLTVATRTGSKDLPIRNIPGNYGLP 37
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 27.4 bits (61), Expect = 5.8
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 181 LSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPS 233
LS+ ++ P P P P+PPP P P+ P PP ++SG
Sbjct: 2 LSNSQGQSPPVPFP-APAPPPQPPTPALPHPPAQPPPPPPQQFPQFHVKSGLQ 53
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 26.8 bits (58), Expect = 7.6
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 19/109 (17%)
Query: 141 APPSQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPP 200
+ S E++ +P A A Q+ E+ I E++ +P
Sbjct: 10 SSESGAPEAAEEDPAAAFLAQQES--------EIAGI------ENDEGFGAPAGSQGGLA 55
Query: 201 PDCPEPSNLSLKEDRSPSPPDVDDVSSMQSGPSDMTLNSRIPSPLSGEP 249
P DV +GP+D L+ EP
Sbjct: 56 QPGPASGASE-----DMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1,
2-alpha-mannosidase; substrate analogue, glycosyl
hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP:
a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Length = 538
Score = 26.9 bits (59), Expect = 8.8
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 139 RTAPPSQENESSSAEPPAHSTA--LQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQT 196
R PPSQ+ + + E + R E P ++ + E PS R +
Sbjct: 8 RLDPPSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEV 67
Query: 197 PSPPPDCPEPSN 208
P+ PP P +
Sbjct: 68 PTKPPLPPARTQ 79
>3tx7_B Nuclear receptor subfamily 5 group A member 2; LRH-1, beta-catenin,
armadillo repeat, nuclear receptor LIGA binding domain,
protein binding; HET: P6L; 2.76A {Homo sapiens}
Length = 352
Score = 26.9 bits (59), Expect = 9.0
Identities = 12/95 (12%), Positives = 22/95 (23%), Gaps = 5/95 (5%)
Query: 164 RLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDCPEPSNLSLKEDRSPSPPDVD 223
+LEA VI+ +SS + + + + + + +
Sbjct: 3 KLEAMSQVIQAMPSDLTISSAIQNIHSASKGLPLNHAA-----LPPTDYDRSPFVTSPIS 57
Query: 224 DVSSMQSGPSDMTLNSRIPSPLSGEPVPGPSGLPP 258
PS P P P
Sbjct: 58 MTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSP 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.385
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,193,009
Number of extensions: 233827
Number of successful extensions: 545
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 72
Length of query: 287
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 194
Effective length of database: 4,105,140
Effective search space: 796397160
Effective search space used: 796397160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.5 bits)