RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5386
         (287 letters)



>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 89.4 bits (221), Expect = 4e-23
 Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 3/116 (2%)

Query: 20  LRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSLFIDHPSR 79
           +++  H +++L   ++L   + L DV +        RAHK VL ACS  F S+F D   R
Sbjct: 3   IQFTRHASDVLLNLNRLRSRDILTDVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKR 61

Query: 80  H--PIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQD 133
           +   I +  ++       L++FMY   +N+    +  ++ TA  L+++ + +  + 
Sbjct: 62  NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 117


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
           protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 87.4 bits (216), Expect = 3e-22
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 13  MGSEHYCLRWNNHQNNLLGVFSQLLHDESLVDVTLACSEGHSIRAHKVVLSACSSYFQSL 72
           MG      +  +H   LL   +Q+    +L DV +   +     AH+ VL+  S  F+  
Sbjct: 1   MGMIQL--QNPSHPTGLLCKANQMRLAGTLCDVVIMV-DSQEFHAHRTVLACTSKMFEI- 56

Query: 73  FIDHPSRHPIVILKDVCFSELRTLIEFMYRGEVNVEYCQLSTLLKTAESLKVKGLAEMTQ 132
                       L  +     + ++E+ Y   +  +   L  LL  AE L+++ L E   
Sbjct: 57  --LFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCL 114

Query: 133 D 133
            
Sbjct: 115 K 115


>d2a9da1 b.1.18.6 (A:344-466) Sulfite oxidase, C-terminal domain
           {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 123

 Score = 26.8 bits (59), Expect = 1.6
 Identities = 5/19 (26%), Positives = 9/19 (47%)

Query: 234 DMTLNSRIPSPLSGEPVPG 252
           ++ + S +  P  G  VP 
Sbjct: 1   ELPVQSAVTQPRPGAAVPP 19


>d1ogpa1 b.1.18.6 (A:263-389) Sulfite oxidase, C-terminal domain
           {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 127

 Score = 26.5 bits (58), Expect = 2.2
 Identities = 5/19 (26%), Positives = 7/19 (36%)

Query: 234 DMTLNSRIPSPLSGEPVPG 252
           D  + S I S    + V  
Sbjct: 1   DFPVQSAICSVEDVQMVKP 19


>d1vjla_ d.257.1.1 (A:) Hypothetical protein TM0160 {Thermotoga
          maritima [TaxId: 2336]}
          Length = 151

 Score = 25.7 bits (56), Expect = 4.3
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 68 YFQSLFIDHPSRHPIVILKDV 88
          + ++L +D  S  P+VIL   
Sbjct: 6  WVKTLALDRVSNTPVVILGIE 26


>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 196

 Score = 24.9 bits (54), Expect = 9.8
 Identities = 13/87 (14%), Positives = 20/87 (22%), Gaps = 12/87 (13%)

Query: 144 SQENESSSAEPPAHSTALQQRLEASPPVIELTTIKRRLSSEDERNTPSPRPQTPSPPPDC 203
           SQ+  S S      S   + R EA                E             +  P  
Sbjct: 18  SQKGYSWSQ----FSDVEENRTEAPEETE--------AERETPSAINGNPSWHLADSPAV 65

Query: 204 PEPSNLSLKEDRSPSPPDVDDVSSMQS 230
              +  S   D     P      +++ 
Sbjct: 66  NGATGHSSSLDAREVIPMAAVKQALRE 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0574    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,018,961
Number of extensions: 44841
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 8
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.2 bits)