BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5387
(200 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
+QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+ G VMQFGR+ + +T+D+
Sbjct: 184 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 242
Query: 180 YPFSAVQAFAVALANITQRL 199
YP A+QAFA+AL++ +L
Sbjct: 243 YPLCALQAFAIALSSFDSKL 262
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
+QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+ G VMQFGR+ + +T+D+
Sbjct: 192 LQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 250
Query: 180 YPFSAVQAFAVALANITQRL 199
YP A+QAFA+AL++ +L
Sbjct: 251 YPLCALQAFAIALSSFDSKL 270
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 5/80 (6%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ----VMQFGRIDYNAYTLDFQ 179
+QNK P+WN+ ++ Y L+F GRVTQ S KNFQ+ G VMQFGR+ + +T+D+
Sbjct: 184 LQNKTPVWNDDTESYVLNFHGRVTQASVKNFQI-IHGNDPDYIVMQFGRVAEDVFTMDYN 242
Query: 180 YPFSAVQAFAVALANITQRL 199
YP A+QAFA+AL++ +L
Sbjct: 243 YPLCALQAFAIALSSFDSKL 262
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQY 180
+ NK P+WN+ S Y L+F GRVTQ S KNFQ+ V+QFGR+ +A+TLD++Y
Sbjct: 195 LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY 254
Query: 181 PFSAVQAFAVALANITQRL 199
P A+QAFA+AL++ +L
Sbjct: 255 PLCALQAFAIALSSFDGKL 273
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 124 MQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQ---VMQFGRIDYNAYTLDFQY 180
+ NK P+WN+ S Y L+F GRVTQ S KNFQ+ V+QFGR+ +A+TLD++Y
Sbjct: 171 LHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRY 230
Query: 181 PFSAVQAFAVALAN 194
P A+QAFA+AL++
Sbjct: 231 PLCALQAFAIALSS 244
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 96 KCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQ 155
K Q ++K + R F N ++ K F+ ++KAP + L+ RVTQES N +
Sbjct: 1657 KVQARQKKAY----RFFHNGLINNKLFVAKDKAPYEDRIQSKVFLNPQSRVTQES--NGE 1710
Query: 156 VEFRGKQVMQFG 167
++F + V G
Sbjct: 1711 LKFPAEPVTPTG 1722
>pdb|3B6Y|A Chain A, Crystal Structure Of The Second Hin-200 Domain Of
Interferon-Inducible Protein 16
pdb|3B6Y|B Chain B, Crystal Structure Of The Second Hin-200 Domain Of
Interferon-Inducible Protein 16
Length = 200
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 68 SSTLDSFTSDYKDLETFQSLSYFLFRPQKCQMKKKMSVSTERREFR 113
S +DS SD K++ + F++ P++ + +V+TE FR
Sbjct: 1 GSHMDSAQSDLKEVMVLNATESFVYEPKEQKKMFHATVATENEVFR 46
>pdb|1ONQ|A Chain A, Crystal Structure Of Cd1a In Complex With A Sulfatide
pdb|1ONQ|C Chain C, Crystal Structure Of Cd1a In Complex With A Sulfatide
Length = 283
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 144 GRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPF 182
G + E K + FR + + F I A+ L F+YPF
Sbjct: 56 GNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF 94
>pdb|1XZ0|A Chain A, Crystal Structure Of Cd1a In Complex With A Synthetic
Mycobactin Lipopeptide
pdb|1XZ0|C Chain C, Crystal Structure Of Cd1a In Complex With A Synthetic
Mycobactin Lipopeptide
Length = 279
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 144 GRVTQESAKNFQVEFRGKQVMQFGRIDYNAYTLDFQYPF 182
G + E K + FR + + F I A+ L F+YPF
Sbjct: 56 GNFSNEEWKELETLFRIRTIRSFEGIRRYAHELQFEYPF 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,177,593
Number of Sequences: 62578
Number of extensions: 187805
Number of successful extensions: 807
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 19
length of query: 200
length of database: 14,973,337
effective HSP length: 94
effective length of query: 106
effective length of database: 9,091,005
effective search space: 963646530
effective search space used: 963646530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)