Query psy5387
Match_columns 200
No_of_seqs 107 out of 221
Neff 2.9
Searched_HMMs 46136
Date Sat Aug 17 01:17:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5387.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5387hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502|consensus 100.0 1.3E-39 2.9E-44 294.4 8.0 82 118-199 268-352 (355)
2 KOG2503|consensus 100.0 2.4E-36 5.2E-41 283.6 7.2 176 14-200 381-565 (565)
3 PF01167 Tub: Tub family; Int 100.0 8.2E-36 1.8E-40 255.3 8.7 79 118-196 165-246 (246)
4 PF12043 DUF3527: Domain of un 97.5 0.00015 3.4E-09 66.8 5.0 54 145-198 288-345 (346)
5 TIGR03562 osmo_induc_OsmC pero 36.6 37 0.00081 27.0 2.9 27 170-196 21-56 (135)
6 PF04525 Tub_2: Tubby C 2; In 30.4 1.2E+02 0.0027 24.6 5.0 41 151-193 136-185 (187)
7 TIGR03561 organ_hyd_perox pero 27.2 1.1E+02 0.0023 23.7 4.0 15 182-196 40-54 (134)
8 TIGR03563 perox_SACOL1771 pero 25.1 78 0.0017 24.5 2.9 15 182-196 41-55 (138)
9 PRK15095 FKBP-type peptidyl-pr 19.6 1.4E+02 0.003 24.3 3.4 23 162-184 109-131 (156)
10 PF12056 DUF3537: Protein of u 18.7 65 0.0014 31.1 1.5 19 74-92 353-371 (398)
No 1
>KOG2502|consensus
Probab=100.00 E-value=1.3e-39 Score=294.41 Aligned_cols=82 Identities=44% Similarity=0.805 Sum_probs=79.0
Q ss_pred cCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeC---CceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHh
Q psy5387 118 FKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFR---GKQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALAN 194 (200)
Q Consensus 118 ~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~---~~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSs 194 (200)
..++++|+||+|+||+++|||||||+||||+|||||||||+. ++||||||||++|.|+|||+||||+||||||||||
T Consensus 268 ~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~~p~~iiLQFGrV~kD~FTmDYrYPlSa~QAFaIcLSS 347 (355)
T KOG2502|consen 268 KEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHALDPEYIILQFGRVGKDVFTMDYRYPLSAFQAFAICLSS 347 (355)
T ss_pred cccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccCCCCEEEEEeeeeccceeeecccCccHHHHHHHHHHHh
Confidence 468899999999999999999999999999999999999984 57999999999999999999999999999999999
Q ss_pred hhccc
Q psy5387 195 ITQRL 199 (200)
Q Consensus 195 fdsKL 199 (200)
||+||
T Consensus 348 FdtKl 352 (355)
T KOG2502|consen 348 FDTKL 352 (355)
T ss_pred ccccc
Confidence 99998
No 2
>KOG2503|consensus
Probab=100.00 E-value=2.4e-36 Score=283.56 Aligned_cols=176 Identities=49% Similarity=0.601 Sum_probs=155.6
Q ss_pred cCcCCcchhhhhhhccccccchhHHhhhcchhHHHHhhhcCCCCCCCCCCccc-c--------cCccCCcCcCccchhhh
Q psy5387 14 DASINPTMKKKAHKKCTNIVDASIKCLLNSPMLQRRRKNTNGSGNSRNVFSEE-R--------SSTLDSFTSDYKDLETF 84 (200)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sp~l~r~~~~~~~~~~~~~~~~~e-~--------~~~~~~~~~~~~dle~~ 84 (200)
-||++|.-|-|.|- ..-++|.++|+||.++|+.+|..... +.+++| . .+....+.+-|.|||+|
T Consensus 381 ~asp~~~~k~K~~a----~tla~i~~~lssphggr~~kk~ks~i---~~s~se~~t~tn~~~e~s~s~~ngk~~~dle~m 453 (565)
T KOG2503|consen 381 TASPNPPPKQKLTA----FTLAHIGNVLSSPHGGRLTKKRKSFI---VPSLSEIVTYTNWKMEGSSSKKNGKLPIDLEEM 453 (565)
T ss_pred cCCCCCchhhhhhh----hcccchhhhhcccccCchhhhhhhhc---cchHHHHhhhhhhhccccccccCCCccccHHHH
Confidence 36777777777772 37899999999999999988877543 235555 1 22223378899999999
Q ss_pred hhccccccccchhcccccccCchhhhhhhcccccCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCCceEE
Q psy5387 85 QSLSYFLFRPQKCQMKKKMSVSTERREFRNNMLFKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRGKQVM 164 (200)
Q Consensus 85 q~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~~iVL 164 (200)
+++|. +.|...|+.-..+...+-|++...+.+..+|.||+|.|||.++.|+|||+||||+.|.||||+..++++||
T Consensus 454 n~~q~----~~k~~~gkr~Prs~a~c~~as~~~d~R~~vmtnK~p~wne~tqVyqlDfgGrVtqesakNfQIel~gkQvm 529 (565)
T KOG2503|consen 454 NALQE----LDKHVIGKRIPRSQAMCSYASSVVDARCEVMTNKPPAWNEHTQVYQLDFGGRVTQESAKNFQIELFGKQVM 529 (565)
T ss_pred HHHHH----hhhhhhcccCCCccchhccccccccceEEEeecCCccccccceEEEeccCCccchhhhccceEeecchhhh
Confidence 99999 99999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecCCeeEEEecCCCCHHHHHHHHHHhhhcccC
Q psy5387 165 QFGRIDYNAYTLDFQYPFSAVQAFAVALANITQRLK 200 (200)
Q Consensus 165 QFGKv~kd~F~LDfryPLSplQAFAIALSsfdsKL~ 200 (200)
|||+|+.+.|+|||+||||+.||||+||++...|||
T Consensus 530 qFgRidg~aytldfqypfSa~QaFavalanvtqRLK 565 (565)
T KOG2503|consen 530 QFGRIDGPAYTLDFQYPFSAGQAFAVALANVTQRLK 565 (565)
T ss_pred eeccccCCcccCCCCCchHHHHHHHHHHhhhhhhcC
Confidence 999999999999999999999999999999999986
No 3
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=8.2e-36 Score=255.30 Aligned_cols=79 Identities=44% Similarity=0.818 Sum_probs=70.6
Q ss_pred cCceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHh
Q psy5387 118 FKKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALAN 194 (200)
Q Consensus 118 ~~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSs 194 (200)
..+.++|+||+|.||+++++|+|||+|||++||||||||++++ ++||||||++++.|+|||+|||||+||||||||+
T Consensus 165 ~~~~~~l~~k~P~w~~~~~~~~l~F~gRv~~~SvKNFql~~~~~~~~~~lqfGk~~~~~f~~d~~~Pls~~qAF~i~lss 244 (246)
T PF01167_consen 165 KDELIVLKNKPPRWNEELQSYVLNFNGRVTVASVKNFQLVHPSDPDRIVLQFGKVGKDVFTMDFRYPLSPLQAFAIALSS 244 (246)
T ss_dssp TTSEEEEEE---EEETTTTEEEEEETTSECC-BTTEEEEEBTTBTTSESEEEEEEETTEEEEEEETT-BHHHHHHHHHHH
T ss_pred CcceEEEecCCCcEeccCCeEEeccCCeEeccccceeEEEccCCCCeEEEEEEEecCCEEEEEecCCCCHHHHHHHHHhc
Confidence 4578999999999999999999999999999999999999864 6899999999999999999999999999999999
Q ss_pred hh
Q psy5387 195 IT 196 (200)
Q Consensus 195 fd 196 (200)
||
T Consensus 245 fd 246 (246)
T PF01167_consen 245 FD 246 (246)
T ss_dssp HH
T ss_pred CC
Confidence 98
No 4
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=97.47 E-value=0.00015 Score=66.84 Aligned_cols=54 Identities=20% Similarity=0.463 Sum_probs=44.6
Q ss_pred ceecccccceeEeeCC----ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHhhhcc
Q psy5387 145 RVTQESAKNFQVEFRG----KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANITQR 198 (200)
Q Consensus 145 RVt~ASVKNFQLv~~~----~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSsfdsK 198 (200)
+...+.-+=|.|..++ ..+|-|.-+.++.|.+||+.+||+||||+||+|-++.+
T Consensus 288 ~~~~~~~~~feLf~QG~~~~~P~~sm~~v~~G~Y~V~F~s~lS~LQAFSiciA~lh~~ 345 (346)
T PF12043_consen 288 SSSKESSHPFELFVQGSKEEDPAFSMVNVKEGLYSVEFHSSLSPLQAFSICIAVLHSQ 345 (346)
T ss_pred ccccccCCceeeeecccccCCCceEEEEccCCeEEEEecCcchHHHHHHHhheeeecc
Confidence 3444566678887654 37899999999999999999999999999999977653
No 5
>TIGR03562 osmo_induc_OsmC peroxiredoxin, OsmC subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress.
Probab=36.61 E-value=37 Score=27.04 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=19.4
Q ss_pred cCCee-EEEecCC--------CCHHHHHHHHHHhhh
Q psy5387 170 DYNAY-TLDFQYP--------FSAVQAFAVALANIT 196 (200)
Q Consensus 170 ~kd~F-~LDfryP--------LSplQAFAIALSsfd 196 (200)
.++.| .++...| .+|.|.|+.||+++-
T Consensus 21 ~~g~~~~~~~s~p~~~~~~~G~nPeeLLlaAlaaC~ 56 (135)
T TIGR03562 21 QSGALSETPYSFKTRFEDGPGTNPEELIAAAHAGCF 56 (135)
T ss_pred CCCceeccccccCcccCCCCCCCHHHHHHHHHHHHH
Confidence 33445 5555555 799999999998873
No 6
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=30.40 E-value=1.2e+02 Score=24.58 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=22.4
Q ss_pred ccceeEe-eCCceEEEEe--------eecCCeeEEEecCCCCHHHHHHHHHH
Q psy5387 151 AKNFQVE-FRGKQVMQFG--------RIDYNAYTLDFQYPFSAVQAFAVALA 193 (200)
Q Consensus 151 VKNFQLv-~~~~iVLQFG--------Kv~kd~F~LDfryPLSplQAFAIALS 193 (200)
-++|.++ ..+++|.+.. -.++++|+|+..-.. =+||++||.
T Consensus 136 ~~~~~I~~~~g~~VA~i~rk~~~k~~~~~~dty~l~V~pg~--D~~lv~alv 185 (187)
T PF04525_consen 136 DRSFTIYDSGGRVVAEISRKYSSKKWFSGRDTYTLTVAPGV--DQALVVALV 185 (187)
T ss_dssp TT--EEEECC--EEEEEEE----------B-SEEEEE-TTS--BHHHHHHHH
T ss_pred CcEEEEEEcCCCEEEEEecccceeeEEecCcEEEEEEcCCC--CHHHheeEE
Confidence 4578888 5567777776 236789999996554 556666653
No 7
>TIGR03561 organ_hyd_perox peroxiredoxin, Ohr subfamily. Pfam model pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein.
Probab=27.16 E-value=1.1e+02 Score=23.72 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||+++-
T Consensus 40 ~nP~ell~aAlasC~ 54 (134)
T TIGR03561 40 TNPEQLFAAGYAACF 54 (134)
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999998863
No 8
>TIGR03563 perox_SACOL1771 peroxiredoxin, SACOL1771 subfamily. This protein family belongs to the OsmC/Ohr family (pfam02566, OsmC-like protein) of peroxiredoxins.
Probab=25.14 E-value=78 Score=24.46 Aligned_cols=15 Identities=13% Similarity=-0.093 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||+++-
T Consensus 41 ~nP~elllaAla~C~ 55 (138)
T TIGR03563 41 TNPDEMLLGAAATCY 55 (138)
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998863
No 9
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=19.62 E-value=1.4e+02 Score=24.35 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEEEeeecCCeeEEEecCCCCH
Q psy5387 162 QVMQFGRIDYNAYTLDFQYPFSA 184 (200)
Q Consensus 162 iVLQFGKv~kd~F~LDfryPLSp 184 (200)
+....-+++++..++||.|||..
T Consensus 109 ~~~~V~~i~~~~v~vD~NHPLAG 131 (156)
T PRK15095 109 MPGVIREINGDSITVDFNHPLAG 131 (156)
T ss_pred EEEEEEEEcCCEEEEECCCcCCC
Confidence 34556788999999999999964
No 10
>PF12056 DUF3537: Protein of unknown function (DUF3537); InterPro: IPR021924 This family of transmembrane proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 427 to 453 amino acids in length.
Probab=18.71 E-value=65 Score=31.15 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.1
Q ss_pred cCcCccchhhhhhcccccc
Q psy5387 74 FTSDYKDLETFQSLSYFLF 92 (200)
Q Consensus 74 ~~~~~~dle~~q~~~~~~~ 92 (200)
-...|.|..+|||-|-+|=
T Consensus 353 ~~~~~~~~~SfqKRQALVt 371 (398)
T PF12056_consen 353 QLPSYADMISFQKRQALVT 371 (398)
T ss_pred cccccchhHHHHHHHHHHH
Confidence 4567999999999887653
Done!