Query psy5387
Match_columns 200
No_of_seqs 107 out of 221
Neff 2.9
Searched_HMMs 29240
Date Sat Aug 17 01:17:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5387.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5387hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fim_A Tubby related protein 1 100.0 7.1E-39 2.4E-43 278.6 8.8 81 119-199 190-273 (276)
2 3c5n_A Tubby-related protein 1 100.0 2E-38 6.8E-43 271.4 8.9 78 119-196 166-246 (246)
3 2okr_C MAP kinase-activated pr 42.5 12 0.0004 22.5 1.6 13 42-54 10-22 (26)
4 1zxu_A AT5G01750 protein; PFAM 39.2 57 0.0019 25.9 5.6 41 151-193 154-204 (217)
5 1lql_A OSMC, osmotical inducib 37.1 27 0.00092 27.0 3.3 15 182-196 64-78 (166)
6 2ql8_A Putative redox protein; 36.9 34 0.0012 25.5 3.8 15 182-196 46-60 (143)
7 2bjo_A Organic hydroperoxide r 29.2 51 0.0018 24.1 3.6 15 182-196 42-56 (136)
8 3cgm_A SLYD, peptidyl-prolyl C 28.4 79 0.0027 24.6 4.7 21 164-184 103-123 (158)
9 3eer_A Organic hydroperoxide r 27.1 64 0.0022 24.3 3.9 15 182-196 51-65 (148)
10 1ml8_A Hypothetical protein (C 22.7 83 0.0028 22.8 3.7 15 182-196 34-48 (134)
11 1zb9_A OHR, organic hydroperox 22.4 83 0.0028 23.4 3.7 15 182-196 48-62 (143)
12 2kr7_A FKBP-type peptidyl-prol 21.1 1.5E+02 0.0052 22.5 5.0 21 163-183 111-131 (151)
13 1usp_A Organic hydroperoxide r 21.0 91 0.0031 22.8 3.6 15 182-196 44-58 (139)
No 1
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=7.1e-39 Score=278.56 Aligned_cols=81 Identities=47% Similarity=0.835 Sum_probs=75.1
Q ss_pred CceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHhh
Q psy5387 119 KKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANI 195 (200)
Q Consensus 119 ~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSsf 195 (200)
.+.++|+||+|+|||++++|||||+||||+|||||||||+++ .+|||||||+++.|+|||+|||||+||||||||||
T Consensus 190 ~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv~~~d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSf 269 (276)
T 2fim_A 190 ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSF 269 (276)
T ss_dssp TTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEECTTCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTC
T ss_pred cceEeeeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999864 58999999999999999999999999999999999
Q ss_pred hccc
Q psy5387 196 TQRL 199 (200)
Q Consensus 196 dsKL 199 (200)
|+||
T Consensus 270 d~Kl 273 (276)
T 2fim_A 270 DGKL 273 (276)
T ss_dssp C---
T ss_pred cccc
Confidence 9998
No 2
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=2e-38 Score=271.44 Aligned_cols=78 Identities=47% Similarity=0.842 Sum_probs=74.9
Q ss_pred CceeEEeeCCCccccCCCeeeecCCCceecccccceeEeeCC---ceEEEEeeecCCeeEEEecCCCCHHHHHHHHHHhh
Q psy5387 119 KKEFIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQVEFRG---KQVMQFGRIDYNAYTLDFQYPFSAVQAFAVALANI 195 (200)
Q Consensus 119 ~~~lvL~nK~P~Wne~~~~Y~LNF~GRVt~ASVKNFQLv~~~---~iVLQFGKv~kd~F~LDfryPLSplQAFAIALSsf 195 (200)
.+.++|+||+|+|||+++||||||+||||+||||||||++++ .+|||||||++|.|+|||+|||||+||||||||||
T Consensus 166 ~~~~~l~nK~P~w~e~~~~y~LnF~GRvt~aSvKNFqLv~~~~~~~ivlqFGKv~~d~FtmD~~yPlS~~QAFaI~LsSf 245 (246)
T 3c5n_A 166 ESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSF 245 (246)
T ss_dssp TTEEEEEECCCEEETTTTEEECCCTTSCCBCCTTCEEEEBTTBTTSCSEEEEEEETTEEEEEEETTCCHHHHHHHHHHTC
T ss_pred cceEEEeccCCcccccCCEEEEecCCeeeccccceEEEEecCCCCEEEEEEEEecCCeEEEEecCCCCHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999999865 58999999999999999999999999999999999
Q ss_pred h
Q psy5387 196 T 196 (200)
Q Consensus 196 d 196 (200)
|
T Consensus 246 D 246 (246)
T 3c5n_A 246 D 246 (246)
T ss_dssp C
T ss_pred C
Confidence 7
No 3
>2okr_C MAP kinase-activated protein kinase 2; NLS, NES, heterodimer, docking groove, transferase; 2.00A {Homo sapiens}
Probab=42.54 E-value=12 Score=22.52 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=10.7
Q ss_pred cchhHHHHhhhcC
Q psy5387 42 NSPMLQRRRKNTN 54 (200)
Q Consensus 42 ~sp~l~r~~~~~~ 54 (200)
|-|||++|+++..
T Consensus 10 nNpLL~kRrkk~~ 22 (26)
T 2okr_C 10 SNPLLLKRRKKAR 22 (26)
T ss_dssp CCHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHH
Confidence 6799999998854
No 4
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=39.23 E-value=57 Score=25.91 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=28.6
Q ss_pred ccceeEeeC--CceEEEEeee--------cCCeeEEEecCCCCHHHHHHHHHH
Q psy5387 151 AKNFQVEFR--GKQVMQFGRI--------DYNAYTLDFQYPFSAVQAFAVALA 193 (200)
Q Consensus 151 VKNFQLv~~--~~iVLQFGKv--------~kd~F~LDfryPLSplQAFAIALS 193 (200)
-.+|.++.. +.+|.+.-|- +.+.|.|++.--+- .||+|||+
T Consensus 154 ~~~f~I~~~~~~~~Va~I~kk~~~~~~~~~~D~y~l~V~p~~D--~aliialv 204 (217)
T 1zxu_A 154 ERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVD--YAFIASLV 204 (217)
T ss_dssp TTCCEEEETTTCCEEEEEEEC--------CBCSEEEEECTTSB--HHHHHHHH
T ss_pred CCEEEEEECCCCEEEEEEEeeeeccccccCCcEEEEEECCCCC--HHHHHHHH
Confidence 478888877 5778887774 55999999943344 36666653
No 5
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.85A {Mycoplasma pneumoniae} SCOP: d.227.1.1
Probab=37.08 E-value=27 Score=27.02 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||++|-
T Consensus 64 ~nP~ELllaalaaC~ 78 (166)
T 1lql_A 64 FGPLAALLSGLAACE 78 (166)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 799999999998874
No 6
>2ql8_A Putative redox protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 1.50A {Lactobacillus casei}
Probab=36.90 E-value=34 Score=25.52 Aligned_cols=15 Identities=13% Similarity=0.162 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||+++-
T Consensus 46 ~nP~eLllaala~C~ 60 (143)
T 2ql8_A 46 TNPEQLLGLSLSTCL 60 (143)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 789999999998874
No 7
>2bjo_A Organic hydroperoxide resistance protein OHRB; heat shock protein, oxidor; 2.10A {Bacillus subtilis}
Probab=29.20 E-value=51 Score=24.11 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||+++-
T Consensus 42 ~nP~eLllaala~C~ 56 (136)
T 2bjo_A 42 TNPEQLFAAGYAACF 56 (136)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998874
No 8
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=28.39 E-value=79 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=17.5
Q ss_pred EEEeeecCCeeEEEecCCCCH
Q psy5387 164 MQFGRIDYNAYTLDFQYPFSA 184 (200)
Q Consensus 164 LQFGKv~kd~F~LDfryPLSp 184 (200)
...-+++++..++||.+||..
T Consensus 103 ~~V~~v~~~~v~vD~NHPLAG 123 (158)
T 3cgm_A 103 LTVVAVEGEEVTVDFNHPLAG 123 (158)
T ss_dssp EEEEEEETTEEEEECSCTTTT
T ss_pred EEEEEECCCEEEEeCCccccC
Confidence 346678999999999999963
No 9
>3eer_A Organic hydroperoxide resistance protein, putativ; csgid, ORHC, struc genomics; 1.45A {Vibrio cholerae o1 biovar el tor} SCOP: d.227.1.0 PDB: 3i07_A* 3lus_A*
Probab=27.15 E-value=64 Score=24.34 Aligned_cols=15 Identities=33% Similarity=0.239 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||++|-
T Consensus 51 ~nP~eLllaalaaC~ 65 (148)
T 3eer_A 51 TNPEQLFAVGYAACF 65 (148)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999998863
No 10
>1ml8_A Hypothetical protein (CRP region); structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 2.60A {Escherichia coli} SCOP: d.227.1.2
Probab=22.72 E-value=83 Score=22.83 Aligned_cols=15 Identities=13% Similarity=0.098 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||+++-
T Consensus 34 ~nP~eLllaala~C~ 48 (134)
T 1ml8_A 34 PSPMEMVLMAAGGCS 48 (134)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccH
Confidence 899999999998874
No 11
>1zb9_A OHR, organic hydroperoxide resistance protein; oxidoreductase; HET: PE4; 1.80A {Xylella fastidiosa} PDB: 1zb8_A*
Probab=22.44 E-value=83 Score=23.37 Aligned_cols=15 Identities=20% Similarity=0.138 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||++|-
T Consensus 48 ~nP~eLllaalaaC~ 62 (143)
T 1zb9_A 48 TNPEQLFAAGYSACF 62 (143)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998864
No 12
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=21.08 E-value=1.5e+02 Score=22.52 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=17.3
Q ss_pred EEEEeeecCCeeEEEecCCCC
Q psy5387 163 VMQFGRIDYNAYTLDFQYPFS 183 (200)
Q Consensus 163 VLQFGKv~kd~F~LDfryPLS 183 (200)
....-.++++.-++||.|||.
T Consensus 111 ~~~V~~v~~~~v~vD~NHPLA 131 (151)
T 2kr7_A 111 QAIIKDFSATHVMVDYNHPLA 131 (151)
T ss_dssp EEEEEEECSSEEEEEECCTTS
T ss_pred EEEEEEECCCEEEEECCCcCC
Confidence 344667899999999999996
No 13
>1usp_A Organic hydroperoxide resistance protein; oxidoreductase, 2-Cys peroxidase; 1.9A {Deinococcus radiodurans} SCOP: d.227.1.1 PDB: 1usp_B
Probab=21.03 E-value=91 Score=22.82 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=13.2
Q ss_pred CCHHHHHHHHHHhhh
Q psy5387 182 FSAVQAFAVALANIT 196 (200)
Q Consensus 182 LSplQAFAIALSsfd 196 (200)
.+|.|.|+.||+++-
T Consensus 44 ~nP~eLllaala~C~ 58 (139)
T 1usp_A 44 TNPEQLFAAGYAACF 58 (139)
T ss_dssp BCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 699999999998864
Done!