RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5387
         (200 letters)



>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 98.9 bits (246), Expect = 4e-26
 Identities = 38/81 (46%), Positives = 54/81 (66%), Gaps = 3/81 (3%)

Query: 122 FIMQNKAPMWNETSQVYQLDFGGRVTQESAKNFQV---EFRGKQVMQFGRIDYNAYTLDF 178
             +QNK P+WN+ +Q Y L+F GRVTQ S KNFQ+         VMQFGR+  + +T+D+
Sbjct: 182 IELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQIIHGNDPDYIVMQFGRVAEDVFTMDY 241

Query: 179 QYPFSAVQAFAVALANITQRL 199
            YP  A+QAFA+AL++   +L
Sbjct: 242 NYPLCALQAFAIALSSFDSKL 262


>d1sr9a3 d.270.1.1 (A:492-643) 2-isopropylmalate synthase LeuA,
           allosteric (dimerisation) domain {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 152

 Score = 25.5 bits (55), Expect = 3.2
 Identities = 3/14 (21%), Positives = 10/14 (71%)

Query: 30  TNIVDASIKCLLNS 43
            +I  AS++ ++++
Sbjct: 134 PSITTASLRAVVSA 147


>d1r8ja1 a.186.1.1 (A:177-282) Circadian clock protein KaiA,
          C-terminal domain {Synechococcus elongatus PCC 7942
          [TaxId: 1140]}
          Length = 106

 Score = 25.0 bits (55), Expect = 3.9
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)

Query: 60 RNVFSEERSSTLDSFTSDYKDLETFQSLSYF 90
          RN+ + E      +  + Y+++     LSYF
Sbjct: 4  RNLPAYESQKLHQAMQTSYREI----VLSYF 30


>d1v2za_ a.186.1.1 (A:) Circadian clock protein KaiA, C-terminal
          domain {Thermosynechococcus elongatus bp-1 [TaxId:
          197221]}
          Length = 106

 Score = 24.7 bits (54), Expect = 4.0
 Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)

Query: 60 RNVFSEERSSTLDSFTSDYKDLETFQSLSYF 90
          R +   ++   LD   S Y+ +     L YF
Sbjct: 7  RRMSPADKRKLLDELRSIYRTI----VLEYF 33


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0691    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 679,051
Number of extensions: 28680
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 4
Length of query: 200
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 119
Effective length of database: 1,295,466
Effective search space: 154160454
Effective search space used: 154160454
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)