BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy539
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SAW|A Chain A, X-Ray Structure Of Homo Sapiens Protein Flj36880
pdb|1SAW|B Chain B, X-Ray Structure Of Homo Sapiens Protein Flj36880
Length = 225
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 27/37 (72%)
Query: 29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
+HHE+E+G+++ +RC+ V A++ + GY L LD+T
Sbjct: 69 LHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMT 105
>pdb|1NR9|A Chain A, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|B Chain B, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|C Chain C, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
pdb|1NR9|D Chain D, Crystal Structure Of Escherichia Coli 1262 (Apc5008),
Putative Isomerase
Length = 223
Score = 38.1 bits (87), Expect = 0.001, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 24 ADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
+D VHHEVE+ ++I ++ IAGY +ALDLT
Sbjct: 64 SDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLT 105
>pdb|1NKQ|A Chain A, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|B Chain B, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|C Chain C, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|D Chain D, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|E Chain E, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
pdb|1NKQ|F Chain F, Crystal Structure Of Yeast Ynq8, A Fumarylacetoacetate
Hydrolase Family Protein
Length = 259
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 20 HPG---IADGSEVHHEVEMGIIISQRCKKVNRY---DALNCIAGYCLALDLT 65
+PG I G +VHHE+E+ +I+S+ V + + + I+G LALDLT
Sbjct: 72 NPGPIFIPRGVKVHHEIELALIVSKHLSNVTKXKPEEVYDSISGVALALDLT 123
>pdb|3S52|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
pdb|3S52|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
Hydrolase Family Protein From Yersinia Pestis Co92
Length = 221
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 25 DGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
D VHHE+E+ ++I K+ + IAGY +ALDLT
Sbjct: 66 DFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLT 106
>pdb|1WZO|A Chain A, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|B Chain B, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|C Chain C, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
pdb|1WZO|D Chain D, Crystal Structure Of The Hpce From Thermus Thermophilus
Hb8
Length = 246
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDL 64
VH+EVE+ +++ + K+V DAL+ + GY +A DL
Sbjct: 94 VHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDL 129
>pdb|3RR6|A Chain A, Structure Of A Putative Uncharacterized Protein From
Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 265
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 26 GSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRH 69
+EVHHE E+ I+I + CK V A I GY + D++ H
Sbjct: 112 ATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDH 155
>pdb|3QDF|A Chain A, Crystal Structure Of 2-Hydroxyhepta-2,4-Diene-1,7-Dioate
Isomerase From Mycobacterium Marinum
Length = 268
Score = 35.0 bits (79), Expect = 0.009, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 24 ADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
A+ S VH E E+ I+I + CK V+ A++ I GY + D++
Sbjct: 113 ANASPVHFEGELAIVIGRPCKDVSAAQAVDNILGYTIGNDVS 154
>pdb|3V77|A Chain A, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|B Chain B, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|C Chain C, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|D Chain D, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|E Chain E, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
pdb|3V77|F Chain F, Crystal Structure Of A Putative Fumarylacetoacetate
IsomeraseHYDROLASE FROM OLEISPIRA ANTARCTICA
Length = 224
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 25 DGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
D VHHE+E+ I+I + + + IAG L LDLT
Sbjct: 62 DQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLT 102
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 28 EVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
E+H+E E+ +++ R + V AL+ + GY +A+D+T
Sbjct: 110 ELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDIT 147
>pdb|1I7O|A Chain A, Crystal Structure Of Hpce
pdb|1I7O|B Chain B, Crystal Structure Of Hpce
pdb|1I7O|C Chain C, Crystal Structure Of Hpce
pdb|1I7O|D Chain D, Crystal Structure Of Hpce
pdb|1GTT|A Chain A, Crystal Structure Of Hpce
pdb|1GTT|B Chain B, Crystal Structure Of Hpce
pdb|1GTT|C Chain C, Crystal Structure Of Hpce
pdb|1GTT|D Chain D, Crystal Structure Of Hpce
Length = 429
Score = 31.6 bits (70), Expect = 0.10, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 29 VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALD 63
+H+E E+ ++I ++ + V+ DA++ +AGY + D
Sbjct: 273 MHYEAELVVVIGKQARNVSEADAMDYVAGYTVCND 307
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 26 GSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
G +V + +I+ + KV DA IAGY LA D++
Sbjct: 57 GEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVS 96
>pdb|3R6O|A Chain A, Crystal Structure Of A Probable
2-Hydroxyhepta-2,4-Diene-1, 7- Dioateisomerase From
Mycobacterium Abscessus
Length = 329
Score = 30.8 bits (68), Expect = 0.19, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 23/35 (65%)
Query: 31 HEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
+E+E+ ++I + ++ R A+ +AGY LA D+T
Sbjct: 157 YEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDIT 191
>pdb|1X3L|A Chain A, Crystal Structure Of The Ph0495 Protein From Pyrococccus
Horikoshii Ot3
Length = 440
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 18 DHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAG 57
D GI DG+ E GI + + K+ N Y+AL + G
Sbjct: 375 DAAGGIVDGTTYKKLREKGIDVEKVLKEHNSYEALKKVGG 414
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,143,614
Number of Sequences: 62578
Number of extensions: 61146
Number of successful extensions: 108
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95
Number of HSP's gapped (non-prelim): 13
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)