Query psy539
Match_columns 70
No_of_seqs 113 out of 1149
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 01:20:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0179 MhpD 2-keto-4-pentenoa 100.0 1.7E-28 3.6E-33 168.9 7.2 70 1-70 84-153 (266)
2 TIGR02303 HpaG-C-term 4-hydrox 99.9 7.4E-28 1.6E-32 163.7 7.4 69 2-70 66-134 (245)
3 PRK10691 hypothetical protein; 99.9 3.3E-25 7.2E-30 148.5 7.6 69 2-70 40-108 (219)
4 PRK15203 4-hydroxyphenylacetat 99.9 4.2E-25 9.2E-30 159.6 7.8 68 2-70 34-101 (429)
5 KOG1535|consensus 99.9 6.4E-25 1.4E-29 146.3 5.9 68 3-70 37-104 (217)
6 PLN02856 fumarylacetoacetase 99.9 1.2E-24 2.5E-29 157.4 7.2 68 3-70 162-247 (424)
7 TIGR01266 fum_ac_acetase fumar 99.9 1.3E-24 2.8E-29 156.8 7.2 68 3-70 155-239 (415)
8 PRK15203 4-hydroxyphenylacetat 99.9 1E-23 2.3E-28 152.4 8.0 69 2-70 246-314 (429)
9 PRK12764 hypothetical protein; 99.9 4.1E-22 8.8E-27 146.3 7.6 69 2-70 44-112 (500)
10 TIGR02305 HpaG-N-term 4-hydrox 99.8 9.3E-21 2E-25 125.5 7.5 69 2-70 32-100 (205)
11 PF01557 FAA_hydrolase: Fumary 99.8 7.5E-20 1.6E-24 121.2 5.7 69 2-70 31-100 (218)
12 KOG2843|consensus 99.5 4.7E-14 1E-18 99.3 4.2 68 3-70 156-241 (420)
13 TIGR03220 catechol_dmpE 2-oxop 98.6 9.9E-08 2.1E-12 65.2 6.0 60 10-70 80-144 (255)
14 COG3970 Fumarylacetoacetate (F 98.4 4.1E-07 9E-12 64.7 4.0 57 3-69 169-226 (379)
15 TIGR02312 HpaH 2-oxo-hepta-3-e 97.7 0.00018 3.9E-09 49.6 7.0 60 10-70 85-146 (267)
16 PRK11342 mhpD 2-keto-4-penteno 97.5 0.00042 9.1E-09 47.5 5.9 58 11-69 85-144 (262)
17 COG3802 GguC Uncharacterized p 96.0 0.0089 1.9E-07 42.2 3.6 56 3-66 141-199 (333)
18 COG3971 2-keto-4-pentenoate hy 95.3 0.016 3.5E-07 40.5 2.5 50 13-63 88-139 (264)
19 TIGR03218 catechol_dmpH 4-oxal 94.3 0.3 6.5E-06 33.6 6.8 52 13-65 91-144 (263)
20 cd01666 TGS_DRG_C TGS_DRG_C: 50.7 12 0.00026 21.2 1.6 25 4-28 3-27 (75)
21 PF12596 Tnp_P_element_C: 87kD 50.0 3.5 7.6E-05 25.3 -0.8 15 46-60 73-87 (106)
22 cd02134 NusA_KH NusA_K homolog 37.0 12 0.00026 20.1 0.1 17 32-48 33-49 (61)
23 COG3925 N-terminal domain of t 36.4 30 0.00065 21.0 1.8 15 31-45 39-53 (103)
24 PF12164 SporV_AA: Stage V spo 33.4 29 0.00062 20.4 1.3 24 1-24 1-25 (93)
25 KOG0544|consensus 30.8 68 0.0015 19.6 2.7 24 12-36 82-105 (108)
26 PF00588 SpoU_methylase: SpoU 30.7 34 0.00073 20.7 1.4 26 28-53 90-115 (142)
27 COG4899 Uncharacterized protei 29.0 48 0.001 21.6 1.9 37 1-37 39-75 (166)
28 PRK01064 hypothetical protein; 26.3 37 0.00081 19.4 1.0 16 33-48 39-54 (78)
29 PRK07084 fructose-bisphosphate 22.8 98 0.0021 22.3 2.7 29 28-56 139-174 (321)
30 PRK12737 gatY tagatose-bisphos 22.8 98 0.0021 21.7 2.7 30 27-56 127-165 (284)
31 PRK07709 fructose-bisphosphate 21.8 97 0.0021 21.8 2.5 30 27-56 130-166 (285)
32 PF14326 DUF4384: Domain of un 21.7 98 0.0021 17.2 2.1 20 12-31 44-63 (83)
33 COG3270 Uncharacterized conser 21.6 1.2E+02 0.0026 19.2 2.7 32 26-57 48-83 (127)
34 PF08383 Maf_N: Maf N-terminal 21.4 59 0.0013 16.1 1.0 17 40-56 17-33 (35)
35 COG0123 AcuC Deacetylases, inc 20.7 54 0.0012 23.6 1.1 28 34-65 115-142 (340)
36 PF00254 FKBP_C: FKBP-type pep 20.1 70 0.0015 17.7 1.3 15 21-36 80-94 (94)
No 1
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.95 E-value=1.7e-28 Score=168.89 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=68.4
Q ss_pred CCceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 1 MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 1 ~~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
+.|.+|+||++++++++++|.+|+.++++|||+||||||||+++++++++|++||+|||++||+|+||+|
T Consensus 84 ~~P~~F~K~~~a~~~~~~~i~~P~~s~~~dyE~ELavvIGk~~~~v~~e~A~d~I~GYti~nD~T~Rd~Q 153 (266)
T COG0179 84 EEPVFFLKPPTAVIGPNDPIPLPPGSKGLDYEGELAVVIGKRGKDVSVEDALDYIAGYTIGNDVTARDLQ 153 (266)
T ss_pred CCCeeeccCcccccCCCCceECCCCCCCcceeEEEEEEECCcCCCCCHHHHHhhheEEeeeeecchhcch
Confidence 4688999999999999999999999999999999999999999999999999999999999999999998
No 2
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related N-terminal domain (TIGR02305). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.95 E-value=7.4e-28 Score=163.65 Aligned_cols=69 Identities=23% Similarity=0.339 Sum_probs=67.2
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|+.+..+|||+||++||||.++++++++|++||+|||++||+|+||+|
T Consensus 66 ~P~~F~Kp~~s~~g~~~~i~~P~~~~~ld~E~EL~vvigk~~~~v~~~~A~~~I~Gytv~nD~T~Rd~q 134 (245)
T TIGR02303 66 EPLVFLKGNNTLTGHKGVTYRPKDVRFMHYECELAVVVGKTAKNVKREDAMDYVLGYTIANDYAIRDYL 134 (245)
T ss_pred CCEEEEcCcceeeCCCCcEECCCCCCceeEEEEEEEEECCCCCCCCHHHHhhheeEEEEEeecchHHHH
Confidence 488999999999999999999999999999999999999999999999999999999999999999987
No 3
>PRK10691 hypothetical protein; Provisional
Probab=99.92 E-value=3.3e-25 Score=148.49 Aligned_cols=69 Identities=28% Similarity=0.330 Sum_probs=66.9
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|+.+.++|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 40 ~P~~F~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvigk~~~~v~~~~a~~~V~gyt~~nDvt~r~~q 108 (219)
T PRK10691 40 EPVLFIKPETALCDLRQPLAIPKDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDLTLRDLQ 108 (219)
T ss_pred CCEEEECCcceeeCCCCcEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHhhhheEEEEEEEeEhhhhh
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 4
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.92 E-value=4.2e-25 Score=159.60 Aligned_cols=68 Identities=24% Similarity=0.296 Sum_probs=65.2
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|+. .++|||+||++||||+++++++++|++||+|||++||+|+||+|
T Consensus 34 ~P~~F~Kp~~al~g~~~~i~~P~~-~~~~~E~EL~vvIGk~~~~v~~~~A~~~V~Gyti~nD~t~rd~q 101 (429)
T PRK15203 34 TAVWFIKPRNTVIRCGEPIPFPQG-EKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES 101 (429)
T ss_pred CCEEEecCcceeeCCCCcEECCCC-CCceEEEEEEEEECCccCCCCHHHHhhheeEEEEEEEeechhhc
Confidence 378999999999999999999997 47999999999999999999999999999999999999999987
No 5
>KOG1535|consensus
Probab=99.91 E-value=6.4e-25 Score=146.34 Aligned_cols=68 Identities=24% Similarity=0.393 Sum_probs=67.0
Q ss_pred ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
|.+|+||.+++++++++|.+|...+.+|||+||++||||.++++++.+|++||+||+++.|+||||+|
T Consensus 37 P~~FlKptss~v~~g~~i~~p~~~~~lh~EvEL~vVigK~~~~v~~~~amd~v~Gy~valDmtARd~q 104 (217)
T KOG1535|consen 37 PFFFLKPTSSIVGPGGPIVIPPGSKGLHHEVELAVVIGKKGSSVKKKDAMDYVGGYAVALDMTARDWQ 104 (217)
T ss_pred CeEEeecchhhcCCCCceEcCCCcCccceeEEEEEEeccccccCChhhcccccccEEEEeeccchhhh
Confidence 78999999999999999999999999999999999999999999999999999999999999999998
No 6
>PLN02856 fumarylacetoacetase
Probab=99.91 E-value=1.2e-24 Score=157.39 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=65.0
Q ss_pred ceEEEcCCCCeecCCCcEecCCC---------------CCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEec
Q psy539 3 QSTYIDNVNSMTLARDHHPGIAD---------------GSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDL 64 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~---------------~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~ 64 (70)
|.+|.|++++++++|.+|.+|.+ ++.+|||+||++||||. ++++++++|++||+||+++|||
T Consensus 162 Pv~y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~ 241 (424)
T PLN02856 162 PIGYHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDW 241 (424)
T ss_pred CCEEcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeec
Confidence 77899999999999999999984 67899999999999997 8999999999999999999999
Q ss_pred cccccC
Q psy539 65 TEVRHL 70 (70)
Q Consensus 65 s~Rd~Q 70 (70)
|+||+|
T Consensus 242 SARDiQ 247 (424)
T PLN02856 242 SARDIQ 247 (424)
T ss_pred hhhhhh
Confidence 999998
No 7
>TIGR01266 fum_ac_acetase fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate.
Probab=99.91 E-value=1.3e-24 Score=156.80 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=65.3
Q ss_pred ceEEEcCCCCeecCCCcEecCCC--------------CCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEecc
Q psy539 3 QSTYIDNVNSMTLARDHHPGIAD--------------GSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDLT 65 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~s 65 (70)
|.+|+|++++++++|.+|.+|.+ ++.+|||+||++||||. ++++++++|++||+||+++||||
T Consensus 155 Pv~y~g~~sSvv~sg~~I~rP~gq~~~~~~~~p~f~ps~~lD~E~ELavvIGk~~~~g~~vs~e~A~~~IfGy~l~ND~S 234 (415)
T TIGR01266 155 PVGYHGRASSIVVSGTPLRRPMGQTLPDNAKPPVFGPCKLLDMELEMAFFVGPGNRLGEPIPISKAEEHIFGVVLMNDWS 234 (415)
T ss_pred CcEeccCCceEEcCCCceeCCCccccCCcccCCcccccCceEEEEEEEEEECcCcccCCcCCHHHHHhhheEEEEeeEcc
Confidence 78999999999999999999985 78899999999999998 89999999999999999999999
Q ss_pred ccccC
Q psy539 66 EVRHL 70 (70)
Q Consensus 66 ~Rd~Q 70 (70)
+||+|
T Consensus 235 ARDiQ 239 (415)
T TIGR01266 235 ARDIQ 239 (415)
T ss_pred hhhhh
Confidence 99998
No 8
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional
Probab=99.90 E-value=1e-23 Score=152.38 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=67.0
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|+.++.+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 246 ~P~~F~K~~~s~~g~~~~i~~P~~~~~ld~E~ELavVigk~~~~v~~~ea~~~V~Gy~~~nD~t~rd~q 314 (429)
T PRK15203 246 EPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARKVSEADAMDYVAGYTVCNDYAIRDYL 314 (429)
T ss_pred CCEEEEcCcceeeCCCCCEECCCCCCceEEEEEEEEEECCCCCCCCHHHHhhheeEEEEEEeccchhhh
Confidence 378999999999999999999999999999999999999999999999999999999999999999987
No 9
>PRK12764 hypothetical protein; Provisional
Probab=99.87 E-value=4.1e-22 Score=146.32 Aligned_cols=69 Identities=20% Similarity=0.214 Sum_probs=66.8
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|.....++||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 44 ~P~~f~K~~~sl~~~g~~I~~p~~~~~l~~E~ELavVIgr~~~~v~~eea~~~I~Gyt~~nDvt~rD~~ 112 (500)
T PRK12764 44 QPSYFLKPSSSLALSGGTVERPAGTELLAFEGEIALVIGRPARRVSPEDAWSHVAAVTAANDLGVYDLR 112 (500)
T ss_pred CCEEEEeccceEeCCCCeEECCCCCCceeEEEEEEEEECCcCCCCCHHHHHhhheEEEEecceeeehhh
Confidence 478999999999999999999998889999999999999999999999999999999999999999986
No 10
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit. This model represents one of two subunits/domains of the bifunctional isomerase/decarboxylase involved in 4-hydroxyphenylacetate degradation. In E. coli and some other species this enzyme is encoded by a single polypeptide containing both this domain and the closely related C-terminal domain (TIGR02303). In other species such as Pasteurella multocida these domains are found as two separate proteins (usually as tandem genes). Together, these domains carry out the decarboxylation of 5-oxopent-3-ene-1,2,5-tricarboxylic acid (OPET) to 2-hydroxy-2,4-diene-1,7-dioate (HHDD) and the subsequent isomerization to 2-oxohept-3-ene-1,7-dioate (OHED).
Probab=99.84 E-value=9.3e-21 Score=125.53 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=65.5
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+|+++++++++++|++|+....++||+|||+||||.++++++++|.+||+||+++||+|+|+.|
T Consensus 32 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELa~vigr~~~~~~~~~a~~~v~g~~~~~dit~~~~~ 100 (205)
T TIGR02305 32 TPVLYIKPRNTHNGCGQPIPLPAGVEKLRSGATLALVVGRTACRVREEEALDYVAGYALVNDVSLPEDS 100 (205)
T ss_pred CCEEEEcCcceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHHHhhheeEEeeeeehhhhh
Confidence 478999999999999999999998889999999999999999999999999999999999999998753
No 11
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I.; InterPro: IPR002529 Fumarylacetoacetase (3.7.1.2 from EC; also known as fumarylacetoacetate hydrolase or FAH) catalyses the hydrolytic cleavage of a carbon-carbon bond in fumarylacetoacetate to yield fumarate and acetoacetate as the final step in phenylalanine and tyrosine degradation []. This is an essential metabolic function in humans, the lack of FAH causing type I tyrosinaemia, which is associated with liver and kidney abnormalities and neurological disorders [, ]. The enzyme mechanism involves a catalytic metal ion, a Glu/His catalytic dyad, and a charged oxyanion hole []. FAH folds into two domains: an N-terminal domain SH3-like beta-barrel, and a C-terminal with an unusual fold consisting of three layers of beta-sheet structures []. This entry represents the C-terminal domain of fumarylacetoacetase, as well as other domains that share a homologous sequence, including: 5-carboxymethyl-2-hydroxymuconate delta-isomerase (CHM isomerase; 5.3.3.10 from EC), which catalyses the conversion of 5-carboxymethyl-2-hydroxymuconate to 5-carboxy-2-oxohept-3-enedioate []. 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase (OPET decarboxylase; 4.1.1.68 from EC), which catalyses the conversion of 5-oxopent-3-ene-1,2,5-tricarboxylate to 2-oxohept-3-enedioate and carbon dioxide. Bifunctional enzyme HpcE (OPET decarboxylase 4.1.1.68 from EC/HHDD isomerase 5.3.3.10 from EC), which is a duplication consisting of a tandem repeat of two FAH C-terminal-like domains. This enzyme is responsible for the degradation of 4-hydroxyphenylacetate, a product of tyrosine and phenylalanine metabolism also released by lignin catabolism []. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1SAW_B 3LZK_B 3S52_B 2WQT_Q 1SV6_C 2DFU_B 1WZO_D 3QDF_A 1GTT_B 1I7O_C ....
Probab=99.80 E-value=7.5e-20 Score=121.20 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=63.8
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCC-CHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKV-NRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v-~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|.|+++++.++|++|.+|..+..+++|+||+++||+.++++ ++++|++||+||+++||+|+|++|
T Consensus 31 ~p~~~~~~~~~~~~~g~~i~~p~~~~~~~~E~Ela~vig~~~~~~~~~~ea~~~i~g~~~~~d~~~r~~~ 100 (218)
T PF01557_consen 31 EPVFFMKPPSSLVGSGAPIPLPRGSRRLDYEAELAFVIGRPLRNVYTPEEALDAIAGYTPANDVTARDLQ 100 (218)
T ss_dssp SGEEEEEEGGGEEETTSEEEECTTSSSEEEEEEEEEEESS-BSSTH-HHHHGGGEEEEEEEEEEEEHHHH
T ss_pred CCeEEecCCceeecCCCceecCccccccCcceEEEEEEecCCCCCCCHHHHHHHhhEEeeecccchhhhh
Confidence 356999999999999999999999999999999999999999999 999999999999999999999865
No 12
>KOG2843|consensus
Probab=99.47 E-value=4.7e-14 Score=99.28 Aligned_cols=68 Identities=15% Similarity=0.131 Sum_probs=58.5
Q ss_pred ceEEEcCCCCeecCCCcEecCCC--------------CCceeeceEEEEEECCC----CCCCCHHhHhhhcceEEEEEec
Q psy539 3 QSTYIDNVNSMTLARDHHPGIAD--------------GSEVHHEVEMGIIISQR----CKKVNRYDALNCIAGYCLALDL 64 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~----~~~v~~~~A~~~I~Gy~~~nD~ 64 (70)
|.-|....++++-+|.||..|-+ ++-+|||.|+|+.+|-. +..++.++|+++|+|++++|||
T Consensus 156 PVGYHGRASSvVVSGTpirRP~GQtkpddae~PvfGacKLlDfELEMAFFvGgpgN~LGepipi~kA~~~iFG~vLMNDW 235 (420)
T KOG2843|consen 156 PVGYHGRASSVVVSGTPIRRPLGQTKPDDAEKPVFGACKLLDFELEMAFFVGGPGNQLGEPIPIDKAWKNIFGFVLMNDW 235 (420)
T ss_pred cccccCceeeEEEcCCcccCcccCCCCCCCCCCcccchhhccceeeeeeEecCCccccCCccchhhhhhheeeEEEeccc
Confidence 44566778889989999988743 56789999999999955 4678999999999999999999
Q ss_pred cccccC
Q psy539 65 TEVRHL 70 (70)
Q Consensus 65 s~Rd~Q 70 (70)
|+||+|
T Consensus 236 SARDIQ 241 (420)
T KOG2843|consen 236 SARDIQ 241 (420)
T ss_pred chhhcc
Confidence 999998
No 13
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase. Members of this protein family are 2-oxopent-4-enoate hydratase, which is also called 2-hydroxypent-2,4-dienoate hydratase. It is closely related to another gene found in the same operon, 4-oxalocrotonate decarboxylase, with which it interacts closely.
Probab=98.63 E-value=9.9e-08 Score=65.18 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=48.0
Q ss_pred CCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHh---hhcceEEEEEeccccccC
Q psy539 10 VNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDAL---NCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 10 ~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~---~~I~Gy~~~nD~s~Rd~Q 70 (70)
.+.+..++.++..+... ..++|+||+++|||.+ ++++++++. ++|+++.-.+|.+.||+|
T Consensus 80 ~~~~~~~g~~i~~~~~~-~~~vE~Elafvlg~~l~~~~~t~~ev~~ai~~v~~~~El~D~r~~~~~ 144 (255)
T TIGR03220 80 DGMVYNEGEPIPTDTLI-QPKAEGEIAFVLKKDLMGPGVTAADVLAATECVMPCFEIVDSRIRDWK 144 (255)
T ss_pred ccccccCCCeeccccCc-cceeeeEEEEEECCCCCCCCCCHHHHHHHHhheeeeEEEcccccccCC
Confidence 34455678889888764 7999999999999996 589999765 566666777899999986
No 14
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only]
Probab=98.38 E-value=4.1e-07 Score=64.71 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=51.2
Q ss_pred ceEEEc-CCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEecccccc
Q psy539 3 QSTYID-NVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRH 69 (70)
Q Consensus 3 ~~~f~K-~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~ 69 (70)
+-+|+| ++.+-+|+|+.|-+.+.+....-|.|+++++...++ |.|||++||+++||+
T Consensus 169 aEIFtKaqpmssVG~Ga~Igv~~~S~WnnPEPEvvl~~dS~G~----------I~GaTlgnDVnlRD~ 226 (379)
T COG3970 169 AEIFTKAQPMSSVGHGAQIGVRPDSEWNNPEPEVVLAVDSSGK----------IVGATLGNDVNLRDF 226 (379)
T ss_pred hhheecCCccccccccceeeeccccccCCCCCeEEEEEcCCCc----------EEeeeecCccccccc
Confidence 347899 567889999999998888889999999999998876 999999999999996
No 15
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. This model represents the enzyme which hydrates the double bond of 2-oxo-hepta-3-ene-1,7-dioic acid to form 4-hydroxy-2-oxo-heptane-1,7-dioic acid in the catabolism of 4-hydroxyphenylacetic acid. The gene for this enzyme is generally found adjacent to other genes of this pathway in an apparent operon.
Probab=97.73 E-value=0.00018 Score=49.62 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=47.9
Q ss_pred CCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEeccccccC
Q psy539 10 VNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 10 ~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.+.+..++..++.+. -.+.-+|+||++++|+.. .+++.+++.++|.++..+.++..+.++
T Consensus 85 ~~~~~~~g~~~~~~~-~~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEi~dsr~~ 146 (267)
T TIGR02312 85 DDMFFEDGSTIPADR-FIQPRVEVELAFVLKKDLEGPNVTIFDVLNATDYVVPALEIIDARIE 146 (267)
T ss_pred CccccCCCCeecccc-ccccccceEEEEEECCCCCCCCCCHHHHHHHhheEEeeEEEeecccc
Confidence 345556677776643 235789999999999987 478999999999999999999887653
No 16
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional
Probab=97.46 E-value=0.00042 Score=47.54 Aligned_cols=58 Identities=14% Similarity=0.087 Sum_probs=46.0
Q ss_pred CCeecCCCcEecCCCCCceeeceEEEEEECCCCC--CCCHHhHhhhcceEEEEEecccccc
Q psy539 11 NSMTLARDHHPGIADGSEVHHEVEMGIIISQRCK--KVNRYDALNCIAGYCLALDLTEVRH 69 (70)
Q Consensus 11 ~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~--~v~~~~A~~~I~Gy~~~nD~s~Rd~ 69 (70)
+.+..++..+.++.. .....|+||++++|+... +++++++.++|.++..+.++-.+.+
T Consensus 85 ~~~~~~g~~~~~~~~-~~~~iE~Eiaf~l~~dl~~~~~t~~ev~~ai~~v~paiEivdsr~ 144 (262)
T PRK11342 85 DMCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRI 144 (262)
T ss_pred hhhcCCCCeeccccc-CCcceeeEEEEEECCCCCCCCCCHHHHHHhhceEeeeEEecCCcc
Confidence 455566777766554 357889999999999875 6899999999999999988876544
No 17
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.03 E-value=0.0089 Score=42.20 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred ceEEEcCC-CCeecCCCcEecCCCCCceeeceEEE--EEECCCCCCCCHHhHhhhcceEEEEEeccc
Q psy539 3 QSTYIDNV-NSMTLARDHHPGIADGSEVHHEVEMG--IIISQRCKKVNRYDALNCIAGYCLALDLTE 66 (70)
Q Consensus 3 ~~~f~K~~-~~~~~~~~~i~~P~~~~~ld~E~ELa--vvig~~~~~v~~~~A~~~I~Gy~~~nD~s~ 66 (70)
|-.|.|-. +.++.||.+++.|+.++.=--|.||+ -+||..+.. |=.||+++|.+|.
T Consensus 141 PEWFyKG~G~~~vapGa~l~sPaFAedggEEpEiaGiYlig~dg~p--------~RlGfal~NEfSD 199 (333)
T COG3802 141 PEWFYKGDGTVAVAPGAPLPSPAFAEDGGEEPEIAGIYLIGDDGTP--------YRLGFALANEFSD 199 (333)
T ss_pred cceEEeCCCcEEecCCCCCCChhhhhccCCCceeeEEEEECCCCce--------eEEeeeecchhhh
Confidence 56788854 56779999999999987777788886 568887654 6689999999985
No 18
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.26 E-value=0.016 Score=40.49 Aligned_cols=50 Identities=18% Similarity=0.055 Sum_probs=39.6
Q ss_pred eecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEe
Q psy539 13 MTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALD 63 (70)
Q Consensus 13 ~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD 63 (70)
....|.+|+.+.... ..+|+||+++++|+. .++|..|+++||.-+..+..
T Consensus 88 ~f~eg~~ip~~r~~~-prvE~EiafvL~kdlpa~~~T~~d~l~a~~~v~palE 139 (264)
T COG3971 88 AFNEGADIPFSRFIQ-PRVEVEIAFVLKKDLPAPDCTVADVLNATDYVLPALE 139 (264)
T ss_pred HhhcCCCCCcccccc-eeeeeeEEEEecCCCCCCCCCHHHHHHHHHhhhhhhh
Confidence 345677788777664 499999999999996 48999999999886665544
No 19
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase. Members of this protein family are 4-oxalocrotonate decarboxylase. Note that this protein, as characterized (indirectly) in Pseudomonas sp. strain CF600, was inactive except when coexpressed with DmpE, 2-oxopent-4-enoate hydratase, a homologous protein from the same operon. Both of these enzymes are active in the degradation of catechol, a common intermediate in the degradation of aromatic compounds such as benzoate, toluene, phenol, dimethylphenol (dmp), salicylate, etc.
Probab=94.25 E-value=0.3 Score=33.62 Aligned_cols=52 Identities=10% Similarity=-0.047 Sum_probs=39.4
Q ss_pred eecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhhhcceEEEEEecc
Q psy539 13 MTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALNCIAGYCLALDLT 65 (70)
Q Consensus 13 ~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~~I~Gy~~~nD~s 65 (70)
+..++.++..... ...-.|+|+++++|+.. .+.+.+++.++|..+..+..+-
T Consensus 91 ~~~~g~~~~~~~~-~~p~vE~Eiaf~l~~~l~~~~~t~~ev~~ai~~v~paiEiv 144 (263)
T TIGR03218 91 SVPDGGEIKTSEL-IHPKVEAEIAFVTKAPLKGPGCHIGDVLAATDFVMPAVEVI 144 (263)
T ss_pred cccCCCeeccccc-CcceeeeEEEEEECCCCCCCCCCHHHHHHhhcEEEeeEEec
Confidence 3345555555443 34689999999999986 5689999999999998887664
No 20
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=50.74 E-value=12 Score=21.21 Aligned_cols=25 Identities=4% Similarity=-0.174 Sum_probs=20.5
Q ss_pred eEEEcCCCCeecCCCcEecCCCCCc
Q psy539 4 STYIDNVNSMTLARDHHPGIADGSE 28 (70)
Q Consensus 4 ~~f~K~~~~~~~~~~~i~~P~~~~~ 28 (70)
.+|+|+...-..-.+++.+|.++.-
T Consensus 3 rvytk~~g~~~d~~~~liL~~GaTV 27 (75)
T cd01666 3 RVYTKPKGQEPDFDEPVILRRGSTV 27 (75)
T ss_pred EEEeCCCCCCCCCCCCEEECCCCCH
Confidence 4799999988777889999987654
No 21
>PF12596 Tnp_P_element_C: 87kDa Transposase; InterPro: IPR022242 This domain family is found in eukaryotes, and is typically between 78 and 110 amino acids in length. The family is found in association with PF05485 from PFAM. There are two completely conserved residues (D and G) that may be functionally important. This family is an 87kDa transposase protein which catalyses both the precise and imprecise excision of a nonautonomous P transposable element.
Probab=49.99 E-value=3.5 Score=25.27 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=12.3
Q ss_pred CCHHhHhhhcceEEE
Q psy539 46 VNRYDALNCIAGYCL 60 (70)
Q Consensus 46 v~~~~A~~~I~Gy~~ 60 (70)
.-.++|++||+||++
T Consensus 73 e~e~d~l~YiaGyVa 87 (106)
T PF12596_consen 73 EIEEDGLEYIAGYVA 87 (106)
T ss_pred hhHHHHHHHHHHHHH
Confidence 356799999999963
No 22
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH). NusA is an essential multifunctional transcription elongation factor that is universally conserved among prokaryotes and archaea. NusA anti-termination function plays an important role in the expression of ribosomal rrn operons. During transcription of many other genes, NusA-induced RNAP pausing provides a mechanism for synchronizing transcription and translation . The N-terminal RNAP-binding domain (NTD) is connected through a flexible hinge helix to three globular domains, S1, KH1 and KH2. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices.
Probab=37.01 E-value=12 Score=20.06 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=13.9
Q ss_pred ceEEEEEECCCCCCCCH
Q psy539 32 EVEMGIIISQRCKKVNR 48 (70)
Q Consensus 32 E~ELavvig~~~~~v~~ 48 (70)
+.+++.+|||.++++..
T Consensus 33 ~~~~~~aIGk~G~nI~~ 49 (61)
T cd02134 33 DDQLGLAIGKGGQNVRL 49 (61)
T ss_pred cccceeeECCCCHHHHH
Confidence 46899999999988643
No 23
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.44 E-value=30 Score=21.03 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=12.0
Q ss_pred eceEEEEEECCCCCC
Q psy539 31 HEVEMGIIISQRCKK 45 (70)
Q Consensus 31 ~E~ELavvig~~~~~ 45 (70)
-|+||++|+|....+
T Consensus 39 ~dAeLviV~G~sipn 53 (103)
T COG3925 39 NDAELVIVFGSSIPN 53 (103)
T ss_pred CcccEEEEeccccCC
Confidence 468999999988544
No 24
>PF12164 SporV_AA: Stage V sporulation protein AA; InterPro: IPR021997 This domain family is found in bacteria - primarily Firmicutes, and is approximately 90 amino acids in length. There is a single completely conserved residue G that may be functionally important. Most annotation associated with this domain suggests that it is involved in the fifth stage of sporulation, however there is little publication to back this up. ; PDB: 3G74_B.
Probab=33.37 E-value=29 Score=20.42 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=17.9
Q ss_pred CCceEEEcCCCCeecC-CCcEecCC
Q psy539 1 MSQSTYIDNVNSMTLA-RDHHPGIA 24 (70)
Q Consensus 1 ~~~~~f~K~~~~~~~~-~~~i~~P~ 24 (70)
|+.++|+|....+--+ +..+.+-+
T Consensus 1 M~~tvYlkl~~~v~v~~~~~V~LgD 25 (93)
T PF12164_consen 1 MSDTVYLKLRQRVEVRPKQDVTLGD 25 (93)
T ss_dssp TSEEEEEEE-SEEEES-SSEEEHHH
T ss_pred CCceEEEEeccEEEEecCCcEEecc
Confidence 8999999988877765 77776644
No 25
>KOG0544|consensus
Probab=30.75 E-value=68 Score=19.61 Aligned_cols=24 Identities=8% Similarity=-0.056 Sum_probs=16.2
Q ss_pred CeecCCCcEecCCCCCceeeceEEE
Q psy539 12 SMTLARDHHPGIADGSEVHHEVEMG 36 (70)
Q Consensus 12 ~~~~~~~~i~~P~~~~~ld~E~ELa 36 (70)
+.-..|-|=.+|+++ .|.||+||.
T Consensus 82 aYG~~G~p~~IppNa-tL~FdVEll 105 (108)
T KOG0544|consen 82 AYGPRGHPGGIPPNA-TLVFDVELL 105 (108)
T ss_pred ccCCCCCCCccCCCc-EEEEEEEEE
Confidence 333445555677766 599999995
No 26
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=30.74 E-value=34 Score=20.73 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=21.2
Q ss_pred ceeeceEEEEEECCCCCCCCHHhHhh
Q psy539 28 EVHHEVEMGIIISQRCKKVNRYDALN 53 (70)
Q Consensus 28 ~ld~E~ELavvig~~~~~v~~~~A~~ 53 (70)
+++|+.-.++|+|...++++.+....
T Consensus 90 ~~~~~~~~~lv~G~E~~Gls~~~~~~ 115 (142)
T PF00588_consen 90 ELDFPKKVALVFGNESRGLSEEVLEL 115 (142)
T ss_dssp GSHTTSSEEEEEEBTTTBS-HHHHHT
T ss_pred ccccccceEEEEcCcCCCCCcccccc
Confidence 56888999999999999999886554
No 27
>COG4899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.04 E-value=48 Score=21.65 Aligned_cols=37 Identities=8% Similarity=-0.119 Sum_probs=29.5
Q ss_pred CCceEEEcCCCCeecCCCcEecCCCCCceeeceEEEE
Q psy539 1 MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGI 37 (70)
Q Consensus 1 ~~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELav 37 (70)
|-|..+-||...++...-||++-.+.+.++|.+..-|
T Consensus 39 ~Cqi~~p~~~r~FIr~~lpIPi~G~~~~l~yG~WveV 75 (166)
T COG4899 39 MCQILNPKPKRHFIRSNLPIPIDGGKKKLDYGGWVEV 75 (166)
T ss_pred ceeecCCCccceeeeecccceecCccceeccceEEEE
Confidence 3456677888899988888888888888999887654
No 28
>PRK01064 hypothetical protein; Provisional
Probab=26.33 E-value=37 Score=19.44 Aligned_cols=16 Identities=19% Similarity=0.466 Sum_probs=12.8
Q ss_pred eEEEEEECCCCCCCCH
Q psy539 33 VEMGIIISQRCKKVNR 48 (70)
Q Consensus 33 ~ELavvig~~~~~v~~ 48 (70)
..++.+|||.++++..
T Consensus 39 ~D~g~vIGk~G~~i~a 54 (78)
T PRK01064 39 PDIGKIIGKEGRTIKA 54 (78)
T ss_pred ccceEEECCCCccHHH
Confidence 4679999999998643
No 29
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=22.83 E-value=98 Score=22.32 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=22.0
Q ss_pred ceeeceEEEEEECCCCC-------CCCHHhHhhhcc
Q psy539 28 EVHHEVEMGIIISQRCK-------KVNRYDALNCIA 56 (70)
Q Consensus 28 ~ld~E~ELavvig~~~~-------~v~~~~A~~~I~ 56 (70)
.+..|+||+-+-|.... ..+|++|.+.+.
T Consensus 139 GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~ 174 (321)
T PRK07084 139 DVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK 174 (321)
T ss_pred CCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH
Confidence 57899999998655432 357899998876
No 30
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.77 E-value=98 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=22.2
Q ss_pred CceeeceEEEEEECCCCC---------CCCHHhHhhhcc
Q psy539 27 SEVHHEVEMGIIISQRCK---------KVNRYDALNCIA 56 (70)
Q Consensus 27 ~~ld~E~ELavvig~~~~---------~v~~~~A~~~I~ 56 (70)
..+..|+||+-|=|.... -.+|++|.+.+.
T Consensus 127 ~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~ 165 (284)
T PRK12737 127 YDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVE 165 (284)
T ss_pred cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHH
Confidence 357899999999665432 347889888775
No 31
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=21.83 E-value=97 Score=21.81 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=22.0
Q ss_pred CceeeceEEEEEECCCCC-------CCCHHhHhhhcc
Q psy539 27 SEVHHEVEMGIIISQRCK-------KVNRYDALNCIA 56 (70)
Q Consensus 27 ~~ld~E~ELavvig~~~~-------~v~~~~A~~~I~ 56 (70)
..+..|+||+-|=|.... -.+|++|.+.+.
T Consensus 130 ~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~ 166 (285)
T PRK07709 130 RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE 166 (285)
T ss_pred cCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH
Confidence 367899999999665432 358888888764
No 32
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.72 E-value=98 Score=17.22 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=13.6
Q ss_pred CeecCCCcEecCCCCCceee
Q psy539 12 SMTLARDHHPGIADGSEVHH 31 (70)
Q Consensus 12 ~~~~~~~~i~~P~~~~~ld~ 31 (70)
..+.+|.++.+|+.....++
T Consensus 44 ~~v~ag~~~~iP~~~~~~~~ 63 (83)
T PF14326_consen 44 NFVKAGQTYTIPDPGDRFSF 63 (83)
T ss_pred ceEcCCceEEcCCCCCceEE
Confidence 56777888888855544444
No 33
>COG3270 Uncharacterized conserved protein [Function unknown]
Probab=21.60 E-value=1.2e+02 Score=19.16 Aligned_cols=32 Identities=13% Similarity=0.187 Sum_probs=24.7
Q ss_pred CCceeeceEEEEEECCCCC----CCCHHhHhhhcce
Q psy539 26 GSEVHHEVEMGIIISQRCK----KVNRYDALNCIAG 57 (70)
Q Consensus 26 ~~~ld~E~ELavvig~~~~----~v~~~~A~~~I~G 57 (70)
.+.+.+.-|+++.++.... .++.++|.++..|
T Consensus 48 kkg~r~s~e~~~al~p~~~~nsiELd~e~a~~w~rG 83 (127)
T COG3270 48 KKGYRWSHEGGFALAPPAVRNSIELDEEEAREWMRG 83 (127)
T ss_pred ccCeeEEeeEEEEeCChhhcceEEeCHHHHHhhhcC
Confidence 3467788899999998864 3688899988655
No 34
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.37 E-value=59 Score=16.10 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=11.9
Q ss_pred CCCCCCCCHHhHhhhcc
Q psy539 40 SQRCKKVNRYDALNCIA 56 (70)
Q Consensus 40 g~~~~~v~~~~A~~~I~ 56 (70)
+..+-++++++|.+..-
T Consensus 17 ~pe~l~LtpEDAvEaLi 33 (35)
T PF08383_consen 17 NPEALGLTPEDAVEALI 33 (35)
T ss_pred ChhhcCCCHHHHHHHHh
Confidence 44566789999887643
No 35
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.74 E-value=54 Score=23.63 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=17.6
Q ss_pred EEEEEECCCCCCCCHHhHhhhcceEEEEEecc
Q psy539 34 EMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65 (70)
Q Consensus 34 ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s 65 (70)
..++.+.-++.+.-++.|. |||++||+.
T Consensus 115 ~~~~~~rppgHHA~~~~a~----GFC~fNn~A 142 (340)
T COG0123 115 NAFALVRPPGHHAGRDRAS----GFCLFNNVA 142 (340)
T ss_pred ceEEECCCCcccccCCCCc----eeeeecHHH
Confidence 4444444445666655444 999999974
No 36
>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5.2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....
Probab=20.09 E-value=70 Score=17.69 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=10.7
Q ss_pred ecCCCCCceeeceEEE
Q psy539 21 PGIADGSEVHHEVEMG 36 (70)
Q Consensus 21 ~~P~~~~~ld~E~ELa 36 (70)
.+|+. ..+.||.||.
T Consensus 80 ~ip~~-~~l~f~Iell 94 (94)
T PF00254_consen 80 KIPPN-STLVFEIELL 94 (94)
T ss_dssp TBTTT-SEEEEEEEEE
T ss_pred CcCCC-CeEEEEEEEC
Confidence 36665 4699999983
Done!