Query psy539
Match_columns 70
No_of_seqs 113 out of 1149
Neff 6.7
Searched_HMMs 29240
Date Sat Aug 17 01:20:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lzk_A Fumarylacetoacetate hyd 99.9 1.6E-27 5.6E-32 168.3 7.5 69 2-70 130-198 (359)
2 4dbf_A 2-hydroxyhepta-2,4-dien 99.9 1.4E-27 4.8E-32 164.7 6.0 69 2-70 106-174 (288)
3 3rr6_A Putative uncharacterize 99.9 4E-27 1.4E-31 160.8 5.9 69 2-70 88-156 (265)
4 3l53_A Putative fumarylacetoac 99.9 1.2E-26 4.1E-31 154.9 5.7 69 2-70 39-107 (224)
5 3r6o_A 2-hydroxyhepta-2,4-dien 99.9 2.1E-26 7.1E-31 161.2 5.9 69 2-70 128-196 (329)
6 3s52_A Putative fumarylacetoac 99.9 3.4E-26 1.1E-30 152.3 5.5 69 2-70 43-111 (221)
7 1wzo_A HPCE; structural genomi 99.9 2.4E-24 8.1E-29 144.8 7.9 69 2-70 67-135 (246)
8 2dfu_A Probable 2-hydroxyhepta 99.9 3.1E-24 1.1E-28 146.1 6.1 69 2-70 75-152 (264)
9 1saw_A Hypothetical protein FL 99.9 3.6E-24 1.2E-28 142.5 5.1 69 2-70 42-110 (225)
10 1hyo_A Fumarylacetoacetate hyd 99.9 5.5E-24 1.9E-28 152.7 6.4 68 3-70 158-242 (421)
11 1gtt_A 4-hydroxyphenylacetate 99.9 6.5E-23 2.2E-27 146.6 7.6 68 2-70 34-101 (429)
12 1gtt_A 4-hydroxyphenylacetate 99.9 1.9E-22 6.6E-27 144.2 6.4 69 2-70 246-315 (429)
13 1nkq_A Hypothetical 28.8 kDa p 99.9 2.6E-22 9E-27 136.4 5.4 68 2-70 33-128 (259)
14 2q18_X 2-keto-3-deoxy-D-arabin 99.8 7E-20 2.4E-24 125.7 5.1 58 3-70 113-171 (293)
15 2eb4_A 2-OXO-HEPT-3-ENE-1,7-di 99.7 1.3E-16 4.5E-21 108.1 6.6 67 3-70 78-146 (267)
16 2wqt_A 2-keto-4-pentenoate hyd 99.5 3.7E-14 1.3E-18 96.2 6.2 64 3-70 81-149 (270)
17 3kt9_A Aprataxin; FHA domain, 60.8 10 0.00034 22.0 3.3 31 1-43 1-31 (102)
18 1jvw_A Macrophage infectivity 32.6 53 0.0018 20.0 3.5 33 21-55 125-157 (167)
19 3kty_A Probable methyltransfer 26.8 42 0.0014 20.3 2.3 24 29-52 115-138 (173)
20 2do3_A Transcription elongatio 24.3 24 0.00082 19.2 0.7 28 30-69 30-57 (69)
21 2eki_A DRG 1, developmentally- 24.2 38 0.0013 19.3 1.6 41 4-44 13-64 (93)
22 3n4j_A RNA methyltransferase; 23.1 53 0.0018 19.9 2.2 26 28-53 96-121 (165)
23 3g74_A Protein of unknown func 22.6 48 0.0016 18.9 1.9 25 1-25 4-28 (100)
24 2ha8_A TAR (HIV-1) RNA loop bi 22.5 52 0.0018 20.2 2.2 25 28-52 117-141 (184)
25 1v2x_A TRNA (GM18) methyltrans 20.3 60 0.002 20.1 2.1 25 28-52 110-134 (194)
No 1
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti}
Probab=99.94 E-value=1.6e-27 Score=168.27 Aligned_cols=69 Identities=17% Similarity=0.069 Sum_probs=67.3
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+|+++++++++++|.+|..++.+|||+||||||||.++++++++|++||+|||++||||+||+|
T Consensus 130 ~P~~F~k~~ssv~g~~~~I~~P~~s~~lD~E~ELavVIGk~~~~v~~e~A~~~I~Gytl~ND~SaRD~Q 198 (359)
T 3lzk_A 130 DPLIYQGGSDSFLGPRDPILMADDAWGIDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLI 198 (359)
T ss_dssp SCCEEEECCSSCBCTTSCEEESCTTSCEECCEEEEEEECCBCTTCCHHHHHHTEEEEEEEECCEETTTH
T ss_pred ccEEEECCCceEECCCCCEECCCCCCCeeEEEEEEEEECCCCCCCCHHHHHhhhcEEEEEEeccHHHhh
Confidence 378999999999999999999999999999999999999999999999999999999999999999997
No 2
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A
Probab=99.94 E-value=1.4e-27 Score=164.69 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=67.2
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|+.++++|||+||||||||.++++++++|++||+||+++||+|+||+|
T Consensus 106 ~P~~F~K~~~sv~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~~~A~~~I~Gytv~nDvsaRd~Q 174 (288)
T 4dbf_A 106 PPTLFLKPPTAVTGPESPIRIPSFATKVEFEGELAVVIGKPCKNVKADDWKSVVLGFTIINDVSSRDLQ 174 (288)
T ss_dssp CCEEEEECGGGEECTTCCEEECTTCCSEECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCEEHHHH
T ss_pred CCEEEEeCcceeeCCCCceECCCCCCceeEEEEEEEEECCCcCCCCHHHHhhheeEEEEEEEeEhHHhh
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 3
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Probab=99.94 E-value=4e-27 Score=160.79 Aligned_cols=69 Identities=29% Similarity=0.364 Sum_probs=67.1
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|..+.++|||+||||||||.++++++++|++||+||+++||+|+||+|
T Consensus 88 ~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~~~A~~~V~Gyt~~nDvsaRd~q 156 (265)
T 3rr6_A 88 SPVIFIKPNTSIIGPGLPIQLPPSATEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSARDHQ 156 (265)
T ss_dssp CCCEEEECGGGEECTTSCEECCTTCSCEEECEEEEEEECSCBSSCCGGGTGGGEEEEEEEECCEEHHHH
T ss_pred CCEEEEeCcceEeCCCCceECCCCCCceeEEEEEEEEECCcCCCCCHHHHHhheeEEEEEEEeEhHHhh
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 4
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural genomics, PSI-2, protein structure initiative; HET: TAR; 2.10A {Oleispira antarctica} PDB: 3v77_A*
Probab=99.93 E-value=1.2e-26 Score=154.92 Aligned_cols=69 Identities=28% Similarity=0.291 Sum_probs=67.0
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|..+.++|||+|||+||||.++++++++|++||+||+++||+|+||+|
T Consensus 39 ~P~~F~K~~~s~~~~g~~I~~P~~~~~~d~E~ELavvIgk~~~~i~~~~A~~~I~Gy~~~nDvs~Rd~q 107 (224)
T 3l53_A 39 SPILFIKPASSAVPFGPVFSIPKDQGSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLTLRDVQ 107 (224)
T ss_dssp SCEEEEEEGGGEEESCSEECCCSSSSCEEECEEEEEEECSCBSSCCHHHHHHHEEEEEEEECCEEHHHH
T ss_pred CCEEEecCCceEECCCCeEecCCCCCCcceEEEEEEEECCCCCCCCHHHHHhhccEEEEEEEeEhHHhh
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 5
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus}
Probab=99.93 E-value=2.1e-26 Score=161.21 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=66.8
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+|+++++++++++|.+|..+..+|||+||||||||.++++++++|++||+||+++||+|+||+|
T Consensus 128 ~P~~F~K~~~s~~g~~~~I~~P~~~~~~d~E~ELavVIGk~~~~v~~e~A~~~I~Gytv~NDvSaRd~q 196 (329)
T 3r6o_A 128 DPVVFMKSPTSISGPRDAVIAPRTSHALDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITARDVA 196 (329)
T ss_dssp CCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCEEHHHH
T ss_pred CCEEEEcccceEECCCCceECCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEEEEEEEeEHHHHh
Confidence 478999999999999999999999999999999999999999999999999999999999999999975
No 6
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A
Probab=99.92 E-value=3.4e-26 Score=152.33 Aligned_cols=69 Identities=28% Similarity=0.335 Sum_probs=67.0
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+||++++++++++|.+|..++++|||+|||+||||.++++++++|++||+||+++||+|+||+|
T Consensus 43 ~P~~F~K~~~~~~~~g~~i~~p~~~~~~d~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nDvs~Rd~q 111 (221)
T 3s52_A 43 EPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQ 111 (221)
T ss_dssp SCEEEEEEGGGEEETTSCBCCCSSSSCEEECEEEEEEECSCBSSCCHHHHHHHEEEEEEEECCEEHHHH
T ss_pred ceEEEEcCCceEeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEEEEEEEeEHHHHh
Confidence 478999999999999999999999999999999999999999999999999999999999999999987
No 7
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus}
Probab=99.91 E-value=2.4e-24 Score=144.82 Aligned_cols=69 Identities=23% Similarity=0.300 Sum_probs=66.9
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+|+++++++++++|.+|..+..+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 67 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a~~~i~g~~~~nD~s~rd~q 135 (246)
T 1wzo_A 67 EPALFWKPNTSLLPHKGVVLYPKGARFVHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDLVARDYV 135 (246)
T ss_dssp SCEEEEECGGGEECTTCCEEECTTCSCEECCEEEEEEECSCBSSCCHHHHGGGEEEEEEEECCEEGGGC
T ss_pred CCEEEEECcccEeCCCCeEECCCCCCceeEEEEEEEEECCCCCCCCHHHHHhheeEEEEEEECchHHhc
Confidence 478999999999999999999998889999999999999999999999999999999999999999998
No 8
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus}
Probab=99.90 E-value=3.1e-24 Score=146.07 Aligned_cols=69 Identities=22% Similarity=0.345 Sum_probs=66.6
Q ss_pred CceEEEcCCCCeecCC---------CcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLAR---------DHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~---------~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+|+++++++++ ++|.+|..++++|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 75 ~P~~f~k~~~s~~~~~~~~rp~g~~~~i~~p~~~~~~d~E~ELavvig~~~~~v~~~~a~~~I~gy~~~nDvt~Rd~q 152 (264)
T 2dfu_A 75 EPGLFLKGPNALARPGNPRDPWGTAEPVPYPFFTEELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITARDVQ 152 (264)
T ss_dssp SCCEEEECGGGEECCCBTTBHHHHSCCEEECSSCSCEECCEEEEEEECSCBSSCCHHHHGGGEEEEEEEECCEEHHHH
T ss_pred CCEEEEeccceEEccCCcccccCCCcceecCCCCCceeEEEEEEEEECCCCCCCCHHHHHHHhhEeEEEEEeEhhhhh
Confidence 3789999999999999 99999999889999999999999999999999999999999999999999987
No 9
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1
Probab=99.89 E-value=3.6e-24 Score=142.54 Aligned_cols=69 Identities=23% Similarity=0.439 Sum_probs=66.6
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|.|+++++++++++|.+|..++.+|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 42 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~ELavvig~~~~~v~~~~a~~~i~g~~~~nDvt~r~~q 110 (225)
T 1saw_A 42 EPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQ 110 (225)
T ss_dssp CCCEEEEEGGGEEETTSCEECCTTCSCEEECEEEEEEESSCBCSCCTTTGGGSEEEEEEEECCEEHHHH
T ss_pred CCEEEECCcceeeCCCCeEECCCCCCCccEEEEEEEEECCCCCCCCHHHHHHhheEEEecccccHHHHh
Confidence 378999999999999999999999889999999999999999999999999999999999999999987
No 10
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A
Probab=99.89 E-value=5.5e-24 Score=152.66 Aligned_cols=68 Identities=15% Similarity=0.109 Sum_probs=65.4
Q ss_pred ceEEEcCCCCeecCCCcEecCCC--------------CCceeeceEEEEEECCC---CCCCCHHhHhhhcceEEEEEecc
Q psy539 3 QSTYIDNVNSMTLARDHHPGIAD--------------GSEVHHEVEMGIIISQR---CKKVNRYDALNCIAGYCLALDLT 65 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~--------------~~~ld~E~ELavvig~~---~~~v~~~~A~~~I~Gy~~~nD~s 65 (70)
|.+|+|++++++++|++|.+|.. ++.+|||+||||||||. ++++++++|++||+||+++||||
T Consensus 158 Pv~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~S 237 (421)
T 1hyo_A 158 PVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS 237 (421)
T ss_dssp CCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCE
T ss_pred CEEEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEecc
Confidence 78999999999999999999986 78999999999999999 78999999999999999999999
Q ss_pred ccccC
Q psy539 66 EVRHL 70 (70)
Q Consensus 66 ~Rd~Q 70 (70)
+||+|
T Consensus 238 aRdiQ 242 (421)
T 1hyo_A 238 ARDIQ 242 (421)
T ss_dssp EHHHH
T ss_pred HHhhh
Confidence 99987
No 11
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.88 E-value=6.5e-23 Score=146.65 Aligned_cols=68 Identities=24% Similarity=0.275 Sum_probs=65.5
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
.|.+|+|++++++++|++|.+|..++ +|||+||++||||.++++++++|++||+||+++||+|+||+|
T Consensus 34 ~P~~f~k~~~~~~~~g~~i~~p~~~~-~~~E~Elavvig~~~~~v~~~~a~~~i~gy~~~nD~s~Rd~~ 101 (429)
T 1gtt_A 34 TAVWFIKPRNTVIGCGEPIPFPQGEK-VLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSLPEES 101 (429)
T ss_dssp SCEEEEECGGGEECTTCCEEECTTCC-EECCEEEEEEECSCBSSCCGGGGGGGEEEEEEEECCBSCCCC
T ss_pred CCEEEEcCcceEEcCCCeeecCCCCC-ccEEEEEEEEECCCCCCCCHHHHHhHhhEEEEEEEeeehhhh
Confidence 37899999999999999999999888 999999999999999999999999999999999999999976
No 12
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Probab=99.86 E-value=1.9e-22 Score=144.21 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=66.4
Q ss_pred CceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccc-cC
Q psy539 2 SQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVR-HL 70 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd-~Q 70 (70)
.|.+|+|+++++++++++|.+|..+.++|||+||++||||.++++++++|++||+||+++||+|+|| +|
T Consensus 246 ~P~~f~k~~~~~~~~g~~i~~p~~~~~~~~E~Elavvig~~~~~v~~~~a~~~i~g~~~~nD~t~Rd~lq 315 (429)
T 1gtt_A 246 EPLVFLKAPNTLTGDNQTSVRPNNIEYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLE 315 (429)
T ss_dssp SCCEEEECGGGEECTTEEEEECTTCSCEECCEEEEEEECSCBSSCCTTTGGGGEEEEEEEECCEEGGGCC
T ss_pred CCEEEEcCcceEeCCCCeEEcCCCCCCccEEEEEEEEECCCCCCCCHHHHHhhheEEEEEEEcccchhhh
Confidence 4789999999999999999999988999999999999999999999999999999999999999999 46
No 13
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1
Probab=99.86 E-value=2.6e-22 Score=136.40 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=63.9
Q ss_pred CceEEEcCCCCeecC------------------------C-CcEecCCCCCceeeceEEEEEECCCCCCCCH---HhHhh
Q psy539 2 SQSTYIDNVNSMTLA------------------------R-DHHPGIADGSEVHHEVEMGIIISQRCKKVNR---YDALN 53 (70)
Q Consensus 2 ~~~~f~K~~~~~~~~------------------------~-~~i~~P~~~~~ld~E~ELavvig~~~~~v~~---~~A~~ 53 (70)
.|.+|+||+++++++ + ++|.+|..+ ++|||+||++||||.++++++ ++|++
T Consensus 33 ~P~~F~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~p~~~-~~d~E~ELavvIg~~~~~v~~~t~~ea~~ 111 (259)
T 1nkq_A 33 QPFFFLKPTSSIVTPLSSSLVKTTRPANSTFNGLNEDGTNPGPIFIPRGV-KVHHEIELALIVSKHLSNVTKMKPEEVYD 111 (259)
T ss_dssp CCCEEEECGGGEEBCTTCC------CCSCSCCCCCTTSCCBCCEEECTTC-CEEECEEEEEEECSCBCSCCCCCGGGTGG
T ss_pred CCEEEeeChhhEecccccccccccccccccccccccccCCCCcEEcCCCC-cccEEEEEEEEECCCCCCCCcCCHHHHHh
Confidence 378999999999998 4 999999987 699999999999999999987 99999
Q ss_pred hcceEEEEEeccccccC
Q psy539 54 CIAGYCLALDLTEVRHL 70 (70)
Q Consensus 54 ~I~Gy~~~nD~s~Rd~Q 70 (70)
||+||+++||+|+||+|
T Consensus 112 ~I~g~~~~nDvt~Rd~q 128 (259)
T 1nkq_A 112 SISGVALALDLTARNVQ 128 (259)
T ss_dssp GEEEEEEEECCEEHHHH
T ss_pred hhhEEEEEEeeeHHHhh
Confidence 99999999999999987
No 14
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A
Probab=99.79 E-value=7e-20 Score=125.75 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=54.4
Q ss_pred ceEEEcC-CCCeecCCCcEecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 3 QSTYIDN-VNSMTLARDHHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 3 ~~~f~K~-~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
|.+|+|+ ++++++++++|.+|..+..+|||+||||||||.++ |+||+++||+|+||+|
T Consensus 113 P~~F~k~~~~~~~g~~~~i~~p~~~~~~d~E~ELavvIg~~~~----------i~Gyt~~nDvs~Rd~q 171 (293)
T 2q18_X 113 PEIFFKATPNRCVGHGEAIAVRSDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSARDLE 171 (293)
T ss_dssp CEEEEEECGGGEECTTSCEEECTTCSCEECCEEEEEEECTTCC----------EEEEEEEEECEEHHHH
T ss_pred CEEEECCCCCeEecCCCEEEcCCCCCCcceEEEEEEEECCCCc----------CceEEEEEEeEeehhh
Confidence 6799997 68999999999999999999999999999999874 9999999999999987
No 15
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A
Probab=99.66 E-value=1.3e-16 Score=108.10 Aligned_cols=67 Identities=15% Similarity=0.041 Sum_probs=60.7
Q ss_pred ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCC--CCCCCHHhHhhhcceEEEEEeccccccC
Q psy539 3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQR--CKKVNRYDALNCIAGYCLALDLTEVRHL 70 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~--~~~v~~~~A~~~I~Gy~~~nD~s~Rd~Q 70 (70)
|.++.++++++++++++|++|... +++||+||++||||. ++++++++|++||+||+++||++.|++|
T Consensus 78 P~~~~l~~~~~~~~g~~i~~p~~~-~~~~E~ELa~vig~~l~~~~vt~~~a~~~v~g~~~~~ei~d~r~~ 146 (267)
T 2eb4_A 78 PDYGALLDDMFFHDGSDIPTDRFI-VPRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCH 146 (267)
T ss_dssp CEEEEEEGGGEECTTEEECGGGCS-SCEEEEEEEEEESSCBCCSSCCHHHHHHHEEEEEEEEEEECCSBC
T ss_pred CcEEEEechheecCCCeecCCccC-cccEeeEEEEEECCCCCCCCCCHHHHHHhhceEEEEEEeeccccc
Confidence 677888899999999999999865 699999999999999 5899999999999999999999876653
No 16
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A
Probab=99.49 E-value=3.7e-14 Score=96.22 Aligned_cols=64 Identities=8% Similarity=-0.003 Sum_probs=56.6
Q ss_pred ceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCC--CCCCHHhHhh---hcceEEEEEeccccccC
Q psy539 3 QSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC--KKVNRYDALN---CIAGYCLALDLTEVRHL 70 (70)
Q Consensus 3 ~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~--~~v~~~~A~~---~I~Gy~~~nD~s~Rd~Q 70 (70)
|.+|.| +++++|++|.+|.. .+++||+||++||||.+ +++++++|++ +|++|+..||.+.||+|
T Consensus 81 ~~lf~~---~~~~~g~~i~~p~~-~~~~~E~ELa~vig~~~~g~~vt~~~a~~ai~~v~~~~ei~D~~~~~~~ 149 (270)
T 2wqt_A 81 GTLFAD---MCYGDNEIIPFSRV-LQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWS 149 (270)
T ss_dssp EEEEGG---GEEETTEEECGGGS-SSCEEEEEEEEEESSCBCCTTCCHHHHHTTEEEEEEEEEEECCSBGGGC
T ss_pred EEEech---heeCCCCeeecCcc-CccceeeEEEEEECCCCCCCCCCHHHHHHhhCeEEEEEEEEcCcccccC
Confidence 445655 79999999999987 47999999999999994 8999999997 88899999999999987
No 17
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=60.78 E-value=10 Score=21.95 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=22.5
Q ss_pred CCceEEEcCCCCeecCCCcEecCCCCCceeeceEEEEEECCCC
Q psy539 1 MSQSTYIDNVNSMTLARDHHPGIADGSEVHHEVEMGIIISQRC 43 (70)
Q Consensus 1 ~~~~~f~K~~~~~~~~~~~i~~P~~~~~ld~E~ELavvig~~~ 43 (70)
|....|++|.+ +...+|.+|++. .|+|||..
T Consensus 1 ~~~~c~L~~~~---~~~~~I~L~~g~---------~v~iGR~p 31 (102)
T 3kt9_A 1 MMRVCWLVRQD---SRHQRIRLPHLE---------AVVIGRGP 31 (102)
T ss_dssp CCCEEEEEETT---STTCEEECCBTC---------EEEECSST
T ss_pred CcceEEEEecC---CCCCcEEcCCCC---------cEEeccCC
Confidence 77888998877 344678888753 26788874
No 18
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1
Probab=32.62 E-value=53 Score=20.05 Aligned_cols=33 Identities=12% Similarity=-0.029 Sum_probs=22.6
Q ss_pred ecCCCCCceeeceEEEEEECCCCCCCCHHhHhhhc
Q psy539 21 PGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCI 55 (70)
Q Consensus 21 ~~P~~~~~ld~E~ELavvig~~~~~v~~~~A~~~I 55 (70)
.+|+++ .+.|+.||.=| .+.....+.+|-.+++
T Consensus 125 ~Ipp~s-~LiF~VeL~~i-~~~~~~~~~~e~~~~l 157 (167)
T 1jvw_A 125 MIPPYS-PLEFDVELISI-KDGGKGRTAEEVDEIL 157 (167)
T ss_dssp SSCTTC-CEEEEEEEEEE-GGGCCSCBHHHHHHHH
T ss_pred CcCCCC-eEEEEEEEEEE-EcCCCCCCHHHHHHHH
Confidence 356654 69999999554 4555667777776664
No 19
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis}
Probab=26.81 E-value=42 Score=20.33 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=19.1
Q ss_pred eeeceEEEEEECCCCCCCCHHhHh
Q psy539 29 VHHEVEMGIIISQRCKKVNRYDAL 52 (70)
Q Consensus 29 ld~E~ELavvig~~~~~v~~~~A~ 52 (70)
.++..-.++|+|...++++++...
T Consensus 115 ~~~~~~~alvfG~E~~GLs~~~l~ 138 (173)
T 3kty_A 115 DTEAGVVAIVLGTERAGLTNAQIE 138 (173)
T ss_dssp HSSSCCEEEEECCCC-CCCHHHHH
T ss_pred cccCCCEEEEECCCCCCCCHHHHH
Confidence 447788999999999999988654
No 20
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=24.30 E-value=24 Score=19.16 Aligned_cols=28 Identities=25% Similarity=0.166 Sum_probs=20.1
Q ss_pred eeceEEEEEECCCCCCCCHHhHhhhcceEEEEEecccccc
Q psy539 30 HHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRH 69 (70)
Q Consensus 30 d~E~ELavvig~~~~~v~~~~A~~~I~Gy~~~nD~s~Rd~ 69 (70)
.||+|-++|+.-... -.+++.|.|.+++
T Consensus 30 ~~~getGlVV~v~~d------------~v~v~SD~t~~Ei 57 (69)
T 2do3_A 30 RFEGDTGLIVRVEEN------------FVILFSDLTMHEL 57 (69)
T ss_dssp TTTTCEEEEEEECSS------------CEEEEESSSCSEE
T ss_pred EEcCceEEEEEEeCC------------EEEEEeCCCCCEE
Confidence 688999988865532 2588888887654
No 21
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=24.23 E-value=38 Score=19.33 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=28.0
Q ss_pred eEEEcCCCCeecCCCcEec-CCCCCceeec----------eEEEEEECCCCC
Q psy539 4 STYIDNVNSMTLARDHHPG-IADGSEVHHE----------VEMGIIISQRCK 44 (70)
Q Consensus 4 ~~f~K~~~~~~~~~~~i~~-P~~~~~ld~E----------~ELavvig~~~~ 44 (70)
.+|.||....-.-.+|+.+ |.++.-.||- .--|+|-|+.+|
T Consensus 13 rVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK 64 (93)
T 2eki_A 13 RIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVK 64 (93)
T ss_dssp EEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSS
T ss_pred EEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEeccccc
Confidence 4789998876656788888 8776544432 234778787765
No 22
>3n4j_A RNA methyltransferase; center for structural genomics of INF diseases, csgid; 1.47A {Yersinia pestis} SCOP: c.116.1.1 PDB: 3n4k_A* 1mxi_A* 1j85_A*
Probab=23.06 E-value=53 Score=19.86 Aligned_cols=26 Identities=8% Similarity=0.051 Sum_probs=21.1
Q ss_pred ceeeceEEEEEECCCCCCCCHHhHhh
Q psy539 28 EVHHEVEMGIIISQRCKKVNRYDALN 53 (70)
Q Consensus 28 ~ld~E~ELavvig~~~~~v~~~~A~~ 53 (70)
+++|..-.++|+|...++++++....
T Consensus 96 ~~~~~~~~alv~G~E~~Gls~~~l~~ 121 (165)
T 3n4j_A 96 AVSYQANDYLLFGPETRGLPAYILDA 121 (165)
T ss_dssp TSCCCTTEEEEECCTTTCSCHHHHTT
T ss_pred hccCCCCeEEEECCCCCCCCHHHHhh
Confidence 46777889999999999999875443
No 23
>3g74_A Protein of unknown function; APC21008.1, structural GE PSI-2, protein structure initiative, midwest center for STR genomics; 2.43A {Eubacterium ventriosum atcc 27560}
Probab=22.58 E-value=48 Score=18.87 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=17.3
Q ss_pred CCceEEEcCCCCeecCCCcEecCCC
Q psy539 1 MSQSTYIDNVNSMTLARDHHPGIAD 25 (70)
Q Consensus 1 ~~~~~f~K~~~~~~~~~~~i~~P~~ 25 (70)
|+.++|+|....+--+...+.+-+-
T Consensus 4 m~~tvYlkl~~~v~v~~~~V~LgDi 28 (100)
T 3g74_A 4 MSDTLYIKMDQAVEITKKQVTVGDV 28 (100)
T ss_dssp CCEEEEEEECSEEEECSSEEEGGGT
T ss_pred CcceEEEEecceEEEcCCCEEEcce
Confidence 8899999988776544446665443
No 24
>2ha8_A TAR (HIV-1) RNA loop binding protein; methyltransferase, structural genomics, structural genomics consortium, SGC, RNA binding protein; HET: SAH; 1.60A {Homo sapiens}
Probab=22.53 E-value=52 Score=20.21 Aligned_cols=25 Identities=0% Similarity=-0.080 Sum_probs=20.6
Q ss_pred ceeeceEEEEEECCCCCCCCHHhHh
Q psy539 28 EVHHEVEMGIIISQRCKKVNRYDAL 52 (70)
Q Consensus 28 ~ld~E~ELavvig~~~~~v~~~~A~ 52 (70)
+++|..-.++|+|...++++.+...
T Consensus 117 ~~~~~~~~alV~G~E~~Gls~~~l~ 141 (184)
T 2ha8_A 117 QYCFPEKSLLLLGNEREGIPANLIQ 141 (184)
T ss_dssp GCCCCSSEEEEECBTTTBSCHHHHT
T ss_pred hccCCCCEEEEECCcccCCCHHHHH
Confidence 4567778999999999999987654
No 25
>1v2x_A TRNA (GM18) methyltransferase; DEEP trefoil knot, riken structural genomics/proteomics INIT RSGI, structural genomics; HET: SAM; 1.50A {Thermus thermophilus} SCOP: c.116.1.1
Probab=20.26 E-value=60 Score=20.11 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=20.5
Q ss_pred ceeeceEEEEEECCCCCCCCHHhHh
Q psy539 28 EVHHEVEMGIIISQRCKKVNRYDAL 52 (70)
Q Consensus 28 ~ld~E~ELavvig~~~~~v~~~~A~ 52 (70)
+++|..-.++|+|...++++.+...
T Consensus 110 ~~~~~~~~alv~G~E~~Gls~~~l~ 134 (194)
T 1v2x_A 110 EVDYTKPTAVLFGAEKWGVSEEALA 134 (194)
T ss_dssp GSCTTSSEEEEECBTTTBSCHHHHH
T ss_pred HcccCCCeEEEECCCCCCCCHHHHH
Confidence 3567778999999999999987554
Done!