RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy539
(70 letters)
>1saw_A Hypothetical protein FLJ36880; structural genomics,
fumarylacetoacetatehydrolase family, unknown function;
2.20A {Homo sapiens} SCOP: d.177.1.1
Length = 225
Score = 63.8 bits (156), Expect = 2e-14
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
+HHE+E+G+++ +RC+ V A++ + GY L LD+T
Sbjct: 67 RNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTA 106
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid,
structural genomics, center for structural genomics O
infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A
Length = 221
Score = 61.8 bits (151), Expect = 8e-14
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
VHHE+E+ ++I K+ + IAGY +ALDLT
Sbjct: 68 GSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTL 107
>3l53_A Putative fumarylacetoacetate isomerase/hydrolase; structural
genomics, PSI-2, protein structure initiative; HET: TAR;
2.10A {Oleispira antarctica} PDB: 3v77_A*
Length = 224
Score = 61.4 bits (150), Expect = 1e-13
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLT 65
VHHE+E+ I+I + + + IAG L LDLT
Sbjct: 64 GSVHHELEIAILIGKALSRASTEQVAESIAGIGLGLDLT 102
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region;
dimer, PSI, protein structure initiative; 2.20A
{Saccharomyces cerevisiae} SCOP: d.177.1.1
Length = 259
Score = 60.1 bits (146), Expect = 5e-13
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 23 IADGSEVHHEVEMGIIISQRCKKVNRY---DALNCIAGYCLALDLTE 66
I G +VHHE+E+ +I+S+ V + + + I+G LALDLT
Sbjct: 78 IPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALDLTA 124
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional
isomerase/decarboxylase; lyase, bifunctional enzyme,
multifunctional enzyme decarboxylase; 1.7A {Escherichia
coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A
Length = 429
Score = 60.7 bits (148), Expect = 5e-13
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 25 DGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
G +V + +I+ + KV DA IAGY LA D++
Sbjct: 56 QGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALANDVSL 97
Score = 58.4 bits (142), Expect = 3e-12
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
+H+E E+ ++I ++ + V+ DA++ +AGY + D
Sbjct: 271 EYMHYEAELVVVIGKQARNVSEADAMDYVAGYTVCNDYAI 310
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom
initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus
thermophilus}
Length = 246
Score = 59.5 bits (145), Expect = 7e-13
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
VH+EVE+ +++ + K+V DAL+ + GY +A DL
Sbjct: 92 RFVHYEVELAVVVGRPMKRVRAKDALDYVLGYTIANDLVA 131
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM;
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase,
structural GE NPPSFA; 2.20A {Thermus thermophilus}
Length = 264
Score = 57.2 bits (139), Expect = 6e-12
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 19 HHPGIADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
+P + E+H+E E+ +++ R + V AL+ + GY +A+D+T
Sbjct: 103 PYPFFTE--ELHYEGELAVVVGDRMRHVPPEKALDHVLGYTVAVDITA 148
>3rr6_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A
Length = 265
Score = 56.8 bits (138), Expect = 8e-12
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
+EVHHE E+ I+I + CK V A I GY + D++
Sbjct: 113 TEVHHEGELAIVIGRPCKDVPAARAAENILGYTIGNDVSA 152
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc
genomics, seattle structural genomics center for
infectious isomerase; 1.95A {Mycobacterium abscessus}
Length = 329
Score = 52.4 bits (126), Expect = 5e-10
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 27 SEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
+ +E+E+ ++I + ++ R A+ +AGY LA D+T
Sbjct: 153 HALDYEIEIAVVIGKPGYRIERSQAIKHVAGYMLANDITA 192
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics,
PSI-2, protein structure initiative; 1.90A
{Sinorhizobium meliloti}
Length = 359
Score = 43.3 bits (102), Expect = 7e-07
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 23 IADGSE-VHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTEVRHL 70
+AD + + E E +I+ +A I L D++ R L
Sbjct: 150 MADDAWGIDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSL-RGL 197
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase;
2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X
2q1c_X 2q1d_X 3bqb_A
Length = 293
Score = 38.1 bits (89), Expect = 5e-05
Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 10/43 (23%)
Query: 24 ADGSEVHHEVEMGIIISQRCKKVNRYDALNCIAGYCLALDLTE 66
+D E E+ +++ K I GY + D++
Sbjct: 135 SDSEWTLPEPELAVVLDSNGK----------ILGYTIMDDVSA 167
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A
{Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A
2hzy_A* 1qco_A 1qqj_A
Length = 421
Score = 34.7 bits (79), Expect = 8e-04
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 18 DHHPGIADGSEVHHEVEMGIIISQ---RCKKVNRYDALNCIAGYCLALDLT 65
P + E+EM + + + A I G L D +
Sbjct: 187 SKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS 237
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.13
Identities = 5/24 (20%), Positives = 10/24 (41%), Gaps = 5/24 (20%)
Query: 49 YDALNCIAGYCL----ALDLTEVR 68
Y AL +A + +++ R
Sbjct: 1767 YAALASLADV-MSIESLVEVVFYR 1789
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda
repressor, protein oligomerization, DNA-looping; 2.91A
{Enterobacteria phage lambda} SCOP: b.87.1.1
Length = 109
Score = 24.6 bits (54), Expect = 2.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 11 NSMTLARDHHPGIADGSEV 29
NSMT P DG +
Sbjct: 21 NSMTAPTGSKPSFPDGMLI 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,135,519
Number of extensions: 53142
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 15
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)