RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy539
         (70 letters)



>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH,
           C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 298

 Score = 35.9 bits (82), Expect = 1e-04
 Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 3/57 (5%)

Query: 12  SMTLARDHHPGIADGSEVHHEVEMGIIISQ---RCKKVNRYDALNCIAGYCLALDLT 65
            M       P       +  E+EM   +       + +    A   I G  L  D +
Sbjct: 61  QMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWS 117


>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 257

 Score = 29.8 bits (66), Expect = 0.018
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 23  IADGSEVHHEVEMGIIISQRCKKV---NRYDALNCIAGYCLALD 63
           I  G +VHHE+E+ +I+S+    V      +  + I+G  LALD
Sbjct: 77  IPRGVKVHHEIELALIVSKHLSNVTKMKPEEVYDSISGVALALD 120


>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain
          {Bacteriophage lambda [TaxId: 10710]}
          Length = 101

 Score = 22.9 bits (49), Expect = 3.4
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 2  SQSTYIDNV--NSMTLARDHHPGIADGSEV 29
          S S +   V  NSMT      P   DG  +
Sbjct: 2  SASAFWLEVEGNSMTAPTGSKPSFPDGMLI 31


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 261,475
Number of extensions: 8943
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 3
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.5 bits)