Query psy5391
Match_columns 157
No_of_seqs 120 out of 255
Neff 3.8
Searched_HMMs 29240
Date Sat Aug 17 01:24:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5391.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5391hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tve_T 50S ribosomal protein L 99.6 5.2E-16 1.8E-20 113.4 8.5 65 32-101 17-81 (92)
2 3r8s_T 50S ribosomal protein L 99.6 6.7E-16 2.3E-20 113.0 7.7 64 36-108 27-90 (93)
3 2zjr_Q 50S ribosomal protein L 99.6 7.1E-16 2.4E-20 113.3 6.4 63 34-101 20-82 (95)
4 1vq8_S 50S ribosomal protein L 99.4 3.4E-13 1.1E-17 97.3 7.4 52 36-109 22-73 (85)
5 3j21_T 50S ribosomal protein L 99.4 1.3E-12 4.4E-17 94.6 7.4 48 36-101 23-70 (86)
6 2zkr_s 60S ribosomal protein L 99.3 8.5E-12 2.9E-16 99.0 7.8 52 36-109 93-144 (156)
7 3u5e_X 60S ribosomal protein L 99.2 1.5E-11 5.3E-16 96.2 7.3 48 36-101 79-126 (142)
8 4a17_R RPL23A, 60S ribosomal p 99.2 2.3E-11 7.8E-16 96.1 7.4 48 36-101 87-134 (150)
9 3iz5_X 60S ribosomal protein L 99.2 4.7E-11 1.6E-15 94.4 6.8 48 36-101 89-136 (152)
10 3bbo_V Ribosomal protein L23; 99.2 9.2E-12 3.1E-16 101.9 2.6 53 35-109 130-182 (198)
11 4dbg_A Ranbp-type and C3HC4-ty 79.0 4 0.00014 29.7 5.4 53 22-75 22-74 (105)
12 3a9j_A Ubiquitin; protein comp 62.6 9.1 0.00031 23.7 3.7 38 37-75 11-48 (76)
13 2g1d_A 30S ribosomal protein S 60.8 7.9 0.00027 28.0 3.5 39 27-65 7-49 (98)
14 2l9w_A U4/U6 snRNA-associated- 60.3 19 0.00064 27.2 5.6 60 34-116 20-79 (117)
15 3phx_B Ubiquitin-like protein 58.7 16 0.00056 23.2 4.5 40 35-75 13-52 (79)
16 1ndd_A NEDD8, protein (ubiquit 57.7 12 0.00043 23.1 3.7 39 36-75 10-48 (76)
17 3n3k_B Ubiquitin; hydrolase, p 57.6 10 0.00035 24.3 3.3 39 36-75 13-51 (85)
18 3k9o_B Ubiquitin, UBB+1; E2-25 55.7 13 0.00045 24.6 3.7 39 36-75 11-49 (96)
19 2v94_A RPS24, 30S ribosomal pr 54.2 13 0.00046 27.2 3.8 43 23-65 9-57 (107)
20 4dwf_A HLA-B-associated transc 53.3 30 0.001 22.5 5.2 43 34-77 13-55 (90)
21 2daf_A FLJ35834 protein; hypot 53.1 34 0.0012 25.6 5.9 57 21-82 14-71 (118)
22 2lxi_A RNA-binding protein 10; 52.9 6 0.00021 26.2 1.6 27 43-70 9-35 (91)
23 1wjn_A Tubulin-folding protein 52.7 16 0.00056 24.7 3.9 39 34-72 20-58 (97)
24 2bwf_A Ubiquitin-like protein 52.2 16 0.00055 22.8 3.6 38 37-75 14-51 (77)
25 3mtn_B UBA80, ubcep1, ubiquiti 51.6 15 0.0005 23.4 3.3 39 36-75 13-51 (85)
26 1wh3_A 59 kDa 2'-5'-oligoadeny 50.9 29 0.00098 22.4 4.7 39 36-75 17-55 (87)
27 1xn9_A 30S ribosomal protein S 50.8 15 0.00051 26.6 3.6 38 28-65 8-48 (101)
28 4fbj_B NEDD8; effector-HOST ta 50.0 14 0.00049 24.5 3.2 41 35-76 9-49 (88)
29 4eew_A Large proline-rich prot 49.4 20 0.00069 23.3 3.8 41 35-76 26-66 (88)
30 1v5o_A 1700011N24RIK protein; 48.7 50 0.0017 22.5 5.9 40 34-74 19-58 (102)
31 2dzi_A Ubiquitin-like protein 46.7 17 0.00059 22.9 3.1 34 37-70 18-51 (81)
32 3dbh_I NEDD8; cell cycle, acti 46.6 16 0.00054 23.6 2.9 40 35-75 21-60 (88)
33 1ywx_A 30S ribosomal protein S 46.2 21 0.00072 26.0 3.7 40 25-64 5-47 (102)
34 4hcn_B Polyubiquitin, ubiquiti 46.1 17 0.0006 24.6 3.2 41 35-76 31-71 (98)
35 3v6c_B Ubiquitin; structural g 44.3 21 0.00073 23.6 3.3 40 35-75 26-65 (91)
36 2xzm_P RPS24E; ribosome, trans 43.6 18 0.00061 28.2 3.2 36 31-66 13-52 (149)
37 1sif_A Ubiquitin; hydrophobic 43.3 20 0.00068 23.8 3.1 40 35-75 18-57 (88)
38 2kvr_A Ubiquitin carboxyl-term 42.6 32 0.0011 25.4 4.4 36 37-72 56-91 (130)
39 2kd0_A LRR repeats and ubiquit 42.6 23 0.00077 23.5 3.2 40 35-75 20-59 (85)
40 3vdz_A Ubiquitin-40S ribosomal 42.5 28 0.00095 24.3 3.8 40 35-75 44-83 (111)
41 3m62_B UV excision repair prot 42.4 18 0.00061 25.1 2.8 42 34-76 9-50 (106)
42 2uyz_B Small ubiquitin-related 41.3 32 0.0011 21.8 3.8 40 35-75 12-51 (79)
43 2klc_A Ubiquilin-1; ubiquitin- 41.0 30 0.001 23.7 3.8 38 37-75 35-72 (101)
44 1wx8_A Riken cDNA 4931431F19; 40.7 19 0.00065 24.0 2.6 35 36-70 26-60 (96)
45 1yx5_B Ubiquitin; proteasome, 40.7 30 0.001 23.1 3.7 38 37-75 11-48 (98)
46 2e44_A Insulin-like growth fac 40.6 70 0.0024 20.4 7.6 30 37-68 17-46 (96)
47 2dgv_A HnRNP M, heterogeneous 40.5 40 0.0014 21.4 4.1 26 43-70 16-41 (92)
48 2l7r_A Ubiquitin-like protein 40.2 20 0.00068 24.2 2.7 38 37-75 28-65 (93)
49 2hj8_A Interferon-induced 17 k 39.4 26 0.0009 23.1 3.2 34 37-70 15-48 (88)
50 2kk8_A Uncharacterized protein 39.0 36 0.0012 22.6 3.8 41 34-75 18-58 (84)
51 1wy8_A NP95-like ring finger p 36.4 33 0.0011 22.2 3.3 34 37-70 19-53 (89)
52 1owx_A Lupus LA protein, SS-B, 36.3 31 0.0011 25.3 3.4 35 32-68 13-50 (121)
53 1j8c_A Ubiquitin-like protein 35.4 43 0.0015 24.1 4.0 40 36-76 41-80 (125)
54 1wx7_A Ubiquilin 3; ubiquitin- 34.9 38 0.0013 23.1 3.5 36 39-75 29-64 (106)
55 1wju_A NEDD8 ultimate buster-1 34.3 70 0.0024 22.7 4.9 54 25-79 18-71 (100)
56 2faz_A Ubiquitin-like containi 33.5 40 0.0014 21.2 3.2 36 39-75 16-52 (78)
57 1yqb_A Ubiquilin 3; structural 33.0 40 0.0014 23.1 3.4 36 39-75 34-69 (100)
58 2dhg_A TRNA selenocysteine ass 32.9 1E+02 0.0034 20.0 6.1 31 39-70 13-43 (104)
59 2kdi_A Ubiquitin, vacuolar pro 32.3 48 0.0016 23.3 3.7 83 34-122 17-103 (114)
60 2dh8_A DAZ-associated protein 32.1 48 0.0016 21.7 3.6 26 43-70 24-49 (105)
61 2kan_A Uncharacterized protein 32.0 38 0.0013 22.9 3.1 37 38-75 26-62 (94)
62 2ojr_A Ubiquitin; lanthide-bin 31.9 42 0.0014 23.2 3.3 39 36-75 45-83 (111)
63 3mdf_A Peptidyl-prolyl CIS-tra 31.5 41 0.0014 20.9 3.0 26 42-69 14-39 (85)
64 1we7_A SF3A1 protein; structur 31.5 38 0.0013 23.6 3.1 41 34-75 43-83 (115)
65 4f25_A Polyadenylate-binding p 31.5 57 0.0019 22.1 3.9 28 41-70 11-38 (115)
66 3b1l_X E3 ubiquitin-protein li 37.0 10 0.00036 23.9 0.0 34 37-70 11-44 (76)
67 2ywk_A Putative RNA-binding pr 30.8 70 0.0024 20.3 4.1 27 42-70 23-49 (95)
68 2cqc_A Arginine/serine-rich sp 30.6 44 0.0015 21.2 3.1 28 41-70 21-48 (95)
69 2wyq_A HHR23A, UV excision rep 30.2 1.1E+02 0.0036 19.4 5.1 39 36-75 15-56 (85)
70 2dgt_A RNA-binding protein 30; 29.8 37 0.0013 21.8 2.6 25 43-69 18-42 (92)
71 4a8x_A RNA-binding protein wit 29.6 70 0.0024 19.8 3.9 27 42-70 11-37 (88)
72 1v86_A DNA segment, CHR 7, way 28.9 54 0.0019 22.1 3.5 34 37-70 27-60 (95)
73 2do4_A Squamous cell carcinoma 28.0 69 0.0024 20.7 3.8 27 42-70 24-50 (100)
74 1x4g_A Nucleolysin TIAR; struc 28.0 70 0.0024 21.1 3.9 29 40-70 30-58 (109)
75 2hzc_A Splicing factor U2AF 65 27.9 77 0.0026 19.7 3.9 29 42-70 13-50 (87)
76 2cph_A RNA binding motif prote 27.9 53 0.0018 21.4 3.2 26 42-69 22-47 (107)
77 2dgs_A DAZ-associated protein 26.5 37 0.0013 22.0 2.2 26 42-69 17-42 (99)
78 3rt3_B Ubiquitin-like protein 26.5 1.1E+02 0.0039 21.7 5.0 43 35-77 11-54 (159)
79 1s79_A Lupus LA protein; RRM, 26.5 73 0.0025 21.5 3.8 28 41-70 17-44 (103)
80 4fxv_A ELAV-like protein 1; RN 25.6 60 0.002 21.6 3.2 30 39-70 23-52 (99)
81 3b08_A Polyubiquitin-C, ubiqui 25.3 73 0.0025 22.2 3.7 38 37-75 11-48 (152)
82 2dnm_A SRP46 splicing factor; 25.3 1.1E+02 0.0039 19.7 4.5 26 42-69 20-45 (103)
83 3u5c_Y RP50, 40S ribosomal pro 25.2 31 0.001 26.4 1.7 33 32-64 16-52 (135)
84 1x5u_A Splicing factor 3B subu 25.2 63 0.0022 21.0 3.2 26 42-69 22-47 (105)
85 1v6e_A Cytoskeleton-associated 24.7 1.5E+02 0.0053 19.6 5.2 35 37-71 19-53 (95)
86 3plu_A Ubiquitin-like modifier 24.7 1.5E+02 0.0053 20.9 5.3 54 22-79 20-73 (93)
87 1wi8_A EIF-4B, eukaryotic tran 24.4 95 0.0033 20.2 4.0 25 43-70 23-47 (104)
88 3rt3_B Ubiquitin-like protein 24.2 1.6E+02 0.0056 20.9 5.5 41 34-75 89-129 (159)
89 1wyw_B Ubiquitin-like protein 23.9 1.7E+02 0.0057 19.6 5.4 41 34-75 29-69 (97)
90 2kj6_A Tubulin folding cofacto 23.4 1.2E+02 0.0042 20.9 4.5 38 34-71 24-61 (97)
91 3b08_A Polyubiquitin-C, ubiqui 23.4 79 0.0027 22.0 3.6 39 36-75 86-124 (152)
92 3md3_A Nuclear and cytoplasmic 23.2 95 0.0033 21.0 3.9 27 42-70 7-33 (166)
93 1b7f_A Protein (SXL-lethal pro 22.9 70 0.0024 21.9 3.2 27 42-70 10-36 (168)
94 2cq3_A RNA-binding protein 9; 22.8 76 0.0026 20.6 3.2 27 42-70 22-48 (103)
95 2dng_A Eukaryotic translation 22.3 51 0.0017 21.5 2.2 25 43-70 23-47 (103)
96 1wxv_A BAG-family molecular ch 21.5 70 0.0024 21.0 2.8 38 37-75 17-59 (92)
97 3jtz_A Integrase; four strande 21.5 41 0.0014 23.1 1.7 27 124-150 24-62 (88)
98 1we6_A Splicing factor, putati 21.5 78 0.0027 21.7 3.2 38 37-75 41-79 (111)
99 3d2w_A TAR DNA-binding protein 21.3 85 0.0029 20.4 3.2 35 34-70 10-44 (89)
100 2g4b_A Splicing factor U2AF 65 21.2 1.1E+02 0.0036 21.1 3.9 28 43-70 12-48 (172)
101 3md1_A Nuclear and cytoplasmic 21.1 62 0.0021 19.9 2.4 26 42-69 8-33 (83)
102 3nmr_A Cugbp ELAV-like family 21.1 80 0.0027 21.7 3.2 27 43-71 11-37 (175)
103 3u30_A Ubiquitin, linear DI-ub 20.8 96 0.0033 22.7 3.7 42 34-76 28-69 (172)
104 3ju0_A Phage integrase; four s 20.7 47 0.0016 23.7 1.9 27 124-150 24-62 (108)
105 2kjr_A CG11242; UBL, ubiquitin 20.5 1.7E+02 0.0057 20.0 4.7 51 21-72 12-63 (95)
106 1whw_A Hypothetical protein ri 20.5 90 0.0031 20.0 3.2 25 43-69 16-40 (99)
107 1wgd_A Homocysteine-responsive 20.0 1.6E+02 0.0054 19.3 4.4 38 37-75 20-59 (93)
No 1
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=99.64 E-value=5.2e-16 Score=113.39 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=56.2
Q ss_pred CCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391 32 EPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF 101 (157)
Q Consensus 32 ~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~ 101 (157)
..++.|+++|.|+++|||.|||+++|++|||+|.+|||++.+||.||.+. .+-+.+++|+|+|++
T Consensus 17 ~~~e~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~kR~g~-----~~G~~~~~KKA~VtL 81 (92)
T 3tve_T 17 AGFAEGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKKKRLGR-----YLGKRPDRKKAIVQV 81 (92)
T ss_dssp TTTTTTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCEEESSS-----CEEECCCEEEEEEEE
T ss_pred HHhhCCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCceeeecc-----ccccCCCceEEEEEc
Confidence 34556999999999999999999999999999999999999999887642 244569999999944
No 2
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=99.63 E-value=6.7e-16 Score=113.00 Aligned_cols=64 Identities=17% Similarity=0.232 Sum_probs=55.9
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSG 108 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~ 108 (157)
.|+++|.|+++|||.|||+++|++|||+|.+|||++.+||.||.+. ..-+.+++|+|+| +|..|
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~kR~g~-----~~G~~~~~KKAiV----tL~~g 90 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKVKRHGQ-----RIGRRSDWKKAYV----TLKEG 90 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCBCCSSS-----SCCBCCCEEEEEE----ECCSC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCceeeeCC-----ccccCCCcEEEEE----EcCCc
Confidence 4999999999999999999999999999999999999999887632 2445699999999 55554
No 3
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=99.61 E-value=7.1e-16 Score=113.25 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF 101 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~ 101 (157)
++.|+++|.|+++|||.|||+++|++|||+|.+|||++.+||.||.+ + .+-+.+++|+|+|++
T Consensus 20 ~e~n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK~kR~g-~----~~G~~~~~KKAiVtL 82 (95)
T 2zjr_Q 20 MERGVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGKRKRVG-R----FIGQRNDRKKAIVRL 82 (95)
T ss_dssp HTTTCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCCCCSSS-S----CCCCCCCBEEEEEEC
T ss_pred HHCCEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCccceec-c----ccccCCCcEEEEEEe
Confidence 45677999999999999999999999999999999999999988752 2 245679999999944
No 4
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=99.42 E-value=3.4e-13 Score=97.35 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=46.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI 109 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~ 109 (157)
.|+++|.|++++||.|||+++|++|||+|.+|||++.+ +++|+|+| +|..|-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~------------------~~~KKA~V----tL~~g~ 73 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTM------------------DGEKKAVV----RLSEDD 73 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECT------------------TSSEEEEE----EECTTS
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecC------------------CCceEEEE----EECCCC
Confidence 58999999999999999999999999999999999976 25999999 555553
No 5
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.37 E-value=1.3e-12 Score=94.56 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=43.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF 101 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~ 101 (157)
.|+++|.|++++||.|||+++|++|||+|.+|||++.++ .+|+|+|++
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~------------------~~KKA~V~L 70 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR------------------GEKKAYVKL 70 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT------------------SCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC------------------CceEEEEEc
Confidence 699999999999999999999999999999999999862 478999933
No 6
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.27 E-value=8.5e-12 Score=98.97 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=47.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI 109 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~ 109 (157)
.|+++|.|++++||.|||+++|++|||+|.+|||++.+| ++|+|+| +|..|-
T Consensus 93 ~n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~------------------~~KKAiV----tL~~g~ 144 (156)
T 2zkr_s 93 NNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD------------------GEKKAYV----RLAPDY 144 (156)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS------------------SCEEEEE----EECTTS
T ss_pred CCcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC------------------CceEEEE----EECCCC
Confidence 389999999999999999999999999999999999987 4899999 666553
No 7
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=99.23 E-value=1.5e-11 Score=96.24 Aligned_cols=48 Identities=19% Similarity=0.323 Sum_probs=44.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF 101 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~ 101 (157)
.|+++|.|+.++||.|||+++|++|||+|.+|||++.++ ++|+|+|++
T Consensus 79 ~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~------------------g~KKAyV~L 126 (142)
T 3u5e_X 79 GNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN------------------GTKKAYVRL 126 (142)
T ss_dssp HCEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT------------------SCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC------------------CceEEEEEe
Confidence 499999999999999999999999999999999999875 588999943
No 8
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=99.21 E-value=2.3e-11 Score=96.07 Aligned_cols=48 Identities=27% Similarity=0.284 Sum_probs=44.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF 101 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~ 101 (157)
.|+++|.|+.++||.|||+++|++|||+|.+|||++.++ ++++|+|++
T Consensus 87 ~N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~------------------g~KKAyV~L 134 (150)
T 4a17_R 87 ENTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT------------------GNKKAYIRL 134 (150)
T ss_dssp SSEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT------------------SCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC------------------CcEEEEEEc
Confidence 699999999999999999999999999999999999875 478888843
No 9
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=99.16 E-value=4.7e-11 Score=94.40 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=43.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeee
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLF 101 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~ 101 (157)
.|+++|.|+.++||.|||+++|++|||+|.+|||++.+ .++|+|+|++
T Consensus 89 ~N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~------------------~g~KKAyV~L 136 (152)
T 3iz5_X 89 NNTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRP------------------DGKKKAYVKL 136 (152)
T ss_dssp HSEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECT------------------TSSEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcC------------------CCceEEEEEc
Confidence 49999999999999999999999999999999999865 2589999943
No 10
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=99.15 E-value=9.2e-12 Score=101.90 Aligned_cols=53 Identities=15% Similarity=0.248 Sum_probs=47.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccch
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGI 109 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~ 109 (157)
..|+++|.|++++||.|||+++|++|||+|.+|||++.+| ++|||+| +|..|-
T Consensus 130 ~nNkyvF~Vd~kANK~QIKqAVEkLFdVKV~kVNTln~~g------------------g~KKAyV----tLaeG~ 182 (198)
T 3bbo_V 130 DENSLLFTVDVRADKKMIREAISNFFGVKVRKVNTLIRPD------------------GTKKAYI----MLNKEY 182 (198)
T ss_dssp TSCEECCEECTTCCHHHHHHTTTTTSCCCEEECCCEEETT------------------TEEECCE----EECTTT
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceeEEEeeEcCC------------------CeEEEEE----EeCCCC
Confidence 3489999999999999999999999999999999999997 4899999 666653
No 11
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=78.99 E-value=4 Score=29.70 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=41.9
Q ss_pred CcEEEEeeCCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 22 NFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 22 nf~~~LvR~~~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.+.|++.=.........+++.|++++|=.++|+.++.-||+++..-| .+..|+
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QR-li~ggk 74 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQ-WVIGQR 74 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEE-EEETTE
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEE-EeccCe
Confidence 46666655433334589999999999999999999999999999988 655554
No 12
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=62.57 E-value=9.1 Score=23.75 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=31.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 11 ~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~ 48 (76)
T 3a9j_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 48 (76)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE-ECCe
Confidence 4678999999999999999999999998877755 3443
No 13
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=60.83 E-value=7.9 Score=27.97 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=31.3
Q ss_pred EeeCCCCCCCcEEEEEecC----CCCHHHHHHHHHHHhCceee
Q psy5391 27 LVRSKEPLPPNVVEFHVPL----AMTNHDIKNYLEKIYNVTVK 65 (157)
Q Consensus 27 LvR~~~~l~pN~vtF~Vp~----~mTK~DIK~YLEkiYnVkV~ 65 (157)
=.+.++.|.-.++.|.|-- ..+|.||++-|.++|+++..
T Consensus 7 ~~~~N~LL~Rke~~~~v~hp~~~tpsk~eirekLA~~~~~~~~ 49 (98)
T 2g1d_A 7 EKRDNPILKRKEIKYVLKFDSSRTPSREEIKELIAKHEGVDKE 49 (98)
T ss_dssp EEEECSSSCEEEEEEEEECCTTSCCCHHHHHHHHHHHHHSCST
T ss_pred EeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCC
Confidence 3344577888899998755 66999999999999999644
No 14
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=60.34 E-value=19 Score=27.22 Aligned_cols=60 Identities=15% Similarity=0.114 Sum_probs=44.3
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccchhhHH
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSA 113 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~~~~~ 113 (157)
.+.--.-|-+|-.+|+..|+..+|..-.+ ..|..+|. -.+||++||+|-|.+ ..+..
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i---------~~g~i~KI---------~L~pDH~GAivef~d-----~~~Ag 76 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHI---------NEKDIRKI---------LLVSDFNGAIIIFRD-----SKFAA 76 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCC---------CTTTCSEE---------EEETTTTEEEEECSC-----HHHHH
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhcc---------CccceeEE---------EEecCCCceEEEEcc-----chhhH
Confidence 35566788999999999999999987655 44444443 345999999997765 35566
Q ss_pred HHH
Q psy5391 114 KRL 116 (157)
Q Consensus 114 k~~ 116 (157)
|..
T Consensus 77 Kas 79 (117)
T 2l9w_A 77 KML 79 (117)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 15
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=58.66 E-value=16 Score=23.21 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=33.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.-....+.|+++.|=.|+|+.++...|+++...+-. ..|+
T Consensus 13 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G~ 52 (79)
T 3phx_B 13 KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGK 52 (79)
T ss_dssp TSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred CCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEE-ECCE
Confidence 345788999999999999999999999999887643 5554
No 16
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=57.74 E-value=12 Score=23.10 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=32.4
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 10 g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~-~~g~ 48 (76)
T 1ndd_A 10 GKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGK 48 (76)
T ss_dssp SCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 34678999999999999999999999998887754 4443
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=57.57 E-value=10 Score=24.27 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.....+.|+++.|=.|+|+.+++..++++...+-. ..|+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~-~~g~ 51 (85)
T 3n3k_B 13 GRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 51 (85)
T ss_dssp GCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETBE
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEE-ECCe
Confidence 34688999999999999999999999999887654 4443
No 18
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=55.72 E-value=13 Score=24.59 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=33.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.....+.|+.+.|=.|+|+.+++.+|+++...+-. ..|+
T Consensus 11 g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~-~~G~ 49 (96)
T 3k9o_B 11 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 49 (96)
T ss_dssp CCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEE-ECCE
Confidence 35678999999999999999999999999888655 5554
No 19
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=54.22 E-value=13 Score=27.18 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=32.8
Q ss_pred cEEEEee--CCCCCCCcEEEEEecC----CCCHHHHHHHHHHHhCceee
Q psy5391 23 FWMKLVR--SKEPLPPNVVEFHVPL----AMTNHDIKNYLEKIYNVTVK 65 (157)
Q Consensus 23 f~~~LvR--~~~~l~pN~vtF~Vp~----~mTK~DIK~YLEkiYnVkV~ 65 (157)
+.+.+.. .++.|.-.++.|.|-- ..+|.||++-|.++|+++..
T Consensus 9 mei~i~k~~~N~LL~Rke~~~~v~Hpg~~tpsk~eirekLA~~~~~~~d 57 (107)
T 2v94_A 9 MEIKITEVKENKLIGRKEIYFEIYHPGEPTPSRKDVKGKLVAMLDLNPE 57 (107)
T ss_dssp CEEEEEEEEEETTTTEEEEEEEEECTTSCCCCHHHHHHHHHHHHTCCGG
T ss_pred eEEEEEEeeecCCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCC
Confidence 3444443 4578888999998754 56899999999999999643
No 20
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=53.29 E-value=30 Score=22.55 Aligned_cols=43 Identities=12% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcce
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSM 77 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~K 77 (157)
+......+.|+.+.|=.|+|+.++..+|+++...+- +..|+.=
T Consensus 13 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL-i~~Gk~L 55 (90)
T 4dwf_A 13 LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRL-IYQGRVL 55 (90)
T ss_dssp TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEE-EETTEEC
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEE-EECCeEC
Confidence 344678899999999999999999999999988865 4566543
No 21
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.08 E-value=34 Score=25.56 Aligned_cols=57 Identities=5% Similarity=-0.003 Sum_probs=45.2
Q ss_pred cCcEEEEe-eCCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceecccc
Q psy5391 21 PNFWMKLV-RSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVS 82 (157)
Q Consensus 21 Pnf~~~Lv-R~~~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~ 82 (157)
+.+.+++. .++ ....+..+++++|=.|+|+.|++.++++....+ +|+.|+.-++...
T Consensus 14 ~~itvkv~l~~~----~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qr-LIy~GKiLKD~eT 71 (118)
T 2daf_A 14 SLATVKVVLIPV----GQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQ-IRYSGKILKNNET 71 (118)
T ss_dssp SCEEEEEEETTT----CCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEE-EEETTEEECSSCC
T ss_pred ccEEEEEEEcCC----CcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEE-EEECCeEcCCcch
Confidence 44666664 432 357888899999999999999999999999998 6688997776433
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=52.88 E-value=6 Score=26.22 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.0
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
.|.++|..||++++++ ||.+|.+|+-.
T Consensus 9 Lp~~~te~~l~~~F~~-~G~~v~~v~i~ 35 (91)
T 2lxi_A 9 LPQAATEDDIRGQLQS-HGVQAREVRLM 35 (91)
T ss_dssp CCSSCCHHHHHHHHHH-HTCCCSBCCSS
T ss_pred CCCCCCHHHHHHHHHH-hCCEeEEEEEE
Confidence 6889999999999986 78777777543
No 23
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=52.69 E-value=16 Score=24.73 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=33.9
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeee
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLE 72 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~ 72 (157)
+....+..++++++|=.++|.-|+.++|+++..-+-...
T Consensus 20 ~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~ 58 (97)
T 1wjn_A 20 PERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYE 58 (97)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEE
Confidence 445678899999999999999999999999988877655
No 24
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=52.17 E-value=16 Score=22.83 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=32.1
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 14 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~-~~gk 51 (77)
T 2bwf_A 14 DKWEVNVAPESTVLQFKEAINKANGIPVANQRLI-YSGK 51 (77)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred EEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEE-ECCe
Confidence 4678999999999999999999999998887754 4443
No 25
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=51.56 E-value=15 Score=23.43 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=32.3
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.....+.|+++.|=.|+|+.+++..++++...+-. ..|+
T Consensus 13 g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~-~~g~ 51 (85)
T 3mtn_B 13 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 51 (85)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 45688999999999999999999999998877644 4443
No 26
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.88 E-value=29 Score=22.38 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=32.5
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
-....+.|+++.|=.|+|+.+++..++++...+-. ..|+
T Consensus 17 g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~-~~Gk 55 (87)
T 1wh3_A 17 GGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLE-FQGQ 55 (87)
T ss_dssp TEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEE-ETTE
T ss_pred CCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEE-ECCE
Confidence 35678999999999999999999999998887754 4443
No 27
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=50.84 E-value=15 Score=26.64 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=29.9
Q ss_pred eeCCCCCCCcEEEEEecC---CCCHHHHHHHHHHHhCceee
Q psy5391 28 VRSKEPLPPNVVEFHVPL---AMTNHDIKNYLEKIYNVTVK 65 (157)
Q Consensus 28 vR~~~~l~pN~vtF~Vp~---~mTK~DIK~YLEkiYnVkV~ 65 (157)
.+.++.|.-.++.|.|-- ..+|.||++-|.++|+++..
T Consensus 8 ~~~N~LL~Rke~~~~v~H~~~tpsk~eirekLAk~~~~~~~ 48 (101)
T 1xn9_A 8 DKKNPLLNRRELDFIVKYEGSTPSRNDVRNKLAAMLNAPLE 48 (101)
T ss_dssp EEEETTTTEEEEEEEEECSSSCCCHHHHHHHHHHHTTCCTT
T ss_pred eeecCCcCcEEEEEEEEcCCCCCCHHHHHHHHHHHHCCCCC
Confidence 334577888888887653 56999999999999999743
No 28
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=49.99 E-value=14 Score=24.53 Aligned_cols=41 Identities=10% Similarity=0.077 Sum_probs=33.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS 76 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~ 76 (157)
....+.+.|+++.|=.|+|+.++...|+++...+-. ..|+.
T Consensus 9 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~ 49 (88)
T 4fbj_B 9 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGKQ 49 (88)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEE-ECCeE
Confidence 345678999999999999999999999998877543 55543
No 29
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=49.45 E-value=20 Score=23.34 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=34.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS 76 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~ 76 (157)
......+.|+++.|=.|+|+.++...|+++...+-. ..|+.
T Consensus 26 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi-~~Gk~ 66 (88)
T 4eew_A 26 DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLI-YQGRV 66 (88)
T ss_dssp TSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTEE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE-ECCEE
Confidence 445678999999999999999999999999888643 55654
No 30
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=48.67 E-value=50 Score=22.47 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=33.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecC
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENA 74 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~g 74 (157)
+.....++.|+.++|=.|+|+.|+...|+++...+-. ..|
T Consensus 19 ~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~g 58 (102)
T 1v5o_A 19 LTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIV-YME 58 (102)
T ss_dssp CCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEE-ETT
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEE-ECC
Confidence 4456788999999999999999999999998776643 444
No 31
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.67 E-value=17 Score=22.93 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=29.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
....+.|+.+.|=.|+|+.+++..|+++...+-.
T Consensus 18 ~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~ 51 (81)
T 2dzi_A 18 RECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLL 51 (81)
T ss_dssp CEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE
Confidence 4678999999999999999999999987776654
No 32
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=46.62 E-value=16 Score=23.59 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=32.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
......+.|+++.|=.|+|+.++...|+++...+-. ..|+
T Consensus 21 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~-~~G~ 60 (88)
T 3dbh_I 21 TGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI-YSGK 60 (88)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEE-ETTE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEE-ECCe
Confidence 446688999999999999999999999998776543 4443
No 33
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=46.22 E-value=21 Score=25.96 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=30.8
Q ss_pred EEEeeCCCCCCCcEEEEEecC---CCCHHHHHHHHHHHhCcee
Q psy5391 25 MKLVRSKEPLPPNVVEFHVPL---AMTNHDIKNYLEKIYNVTV 64 (157)
Q Consensus 25 ~~LvR~~~~l~pN~vtF~Vp~---~mTK~DIK~YLEkiYnVkV 64 (157)
+.-.+.++.|.-.++.|.|-- ..+|.|||+-|.++|+++.
T Consensus 5 I~~~~~N~LL~Rke~~~~v~H~~~tpsk~eirekLAk~~~~~~ 47 (102)
T 1ywx_A 5 IISDRNNPLLQRREIKFTVSFDAATPSIKDVKMKLVAVLNANK 47 (102)
T ss_dssp EEEEEEETTTTEEEEEEEEECSSCCCCHHHHHHHHHHHHTSCS
T ss_pred EEEeeecCCcCcEEEEEEEEcCCCCCCHHHHHHHHHHHHCCCC
Confidence 333444577888888887654 5699999999999999874
No 34
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=46.06 E-value=17 Score=24.56 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=33.4
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS 76 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~ 76 (157)
......+.|+++.|=.|+|+.+++..++++...+-. ..|+.
T Consensus 31 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~ 71 (98)
T 4hcn_B 31 TGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-FAGKQ 71 (98)
T ss_dssp TCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTEE
T ss_pred CCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE-ECCEE
Confidence 345688999999999999999999999998877544 55543
No 35
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=44.27 E-value=21 Score=23.59 Aligned_cols=40 Identities=8% Similarity=0.032 Sum_probs=33.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
......+.|+.+.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 26 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 65 (91)
T 3v6c_B 26 TGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 65 (91)
T ss_dssp TSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEE-ECCe
Confidence 345688999999999999999999999998877544 4554
No 36
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=43.61 E-value=18 Score=28.23 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=29.2
Q ss_pred CCCCCCcEEEEEecC----CCCHHHHHHHHHHHhCceeeE
Q psy5391 31 KEPLPPNVVEFHVPL----AMTNHDIKNYLEKIYNVTVKH 66 (157)
Q Consensus 31 ~~~l~pN~vtF~Vp~----~mTK~DIK~YLEkiYnVkV~~ 66 (157)
++.|.-.++.|.|-- ..+|.||++-|.++|+++...
T Consensus 13 N~LL~RkE~v~dV~Hpg~aTpSk~eIrekLAkmy~~~~d~ 52 (149)
T 2xzm_P 13 NPLLSRRQLSLDVLHPDSPTASKEKIREELAKQLKVDARN 52 (149)
T ss_dssp ETTTTEEEEEEEEECSSSCSCCHHHHHHHHHHHHTCCGGG
T ss_pred ccCcCCEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCCCE
Confidence 367778888887754 779999999999999996443
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=43.29 E-value=20 Score=23.78 Aligned_cols=40 Identities=5% Similarity=-0.007 Sum_probs=33.1
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.-....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 18 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 57 (88)
T 1sif_A 18 TGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLI-FAGK 57 (88)
T ss_dssp TSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEE-ETTE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 345688999999999999999999999998877754 4444
No 38
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=42.58 E-value=32 Score=25.40 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=32.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeee
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLE 72 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~ 72 (157)
+..+|+|..++|=.|+++.|.+.+|+++..+|-..-
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 457899999999999999999999999988887754
No 39
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=42.58 E-value=23 Score=23.54 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=32.5
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
......+.|+++.|=.|+|+.|+...|+++...+-. ..|+
T Consensus 20 ~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~-~~Gk 59 (85)
T 2kd0_A 20 GGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLI-FKGK 59 (85)
T ss_dssp TTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEE-ETTE
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCe
Confidence 345678899999999999999999999998777654 4443
No 40
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=42.48 E-value=28 Score=24.31 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=33.7
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
......+.|+++.|=.|+|+.+++..++++...+-. ..|+
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 83 (111)
T 3vdz_A 44 TGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 83 (111)
T ss_dssp SSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEE-ECCE
Confidence 346788999999999999999999999999887654 5554
No 41
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=42.39 E-value=18 Score=25.13 Aligned_cols=42 Identities=10% Similarity=0.087 Sum_probs=34.8
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS 76 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~ 76 (157)
+......+.|+.+.|=.|+|+.++...|+++...+- +..|+.
T Consensus 9 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL-i~~Gk~ 50 (106)
T 3m62_B 9 FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKL-IYSGKV 50 (106)
T ss_dssp TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEE-EETTEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEE-EECCEE
Confidence 344678899999999999999999999999988764 456654
No 42
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=41.27 E-value=32 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.165 Sum_probs=33.0
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....++|.|+++.|=.++|+.+++..|+++...+- +..|+
T Consensus 12 ~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL-~~~G~ 51 (79)
T 2uyz_B 12 DSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF-LFEGQ 51 (79)
T ss_dssp TCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEE-EECCE
Confidence 34578999999999999999999999999877764 34454
No 43
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=41.03 E-value=30 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=32.6
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+++.|=.|+|+.|+...|+++...+-. ..|+
T Consensus 35 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 72 (101)
T 2klc_A 35 EKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLI-FAGK 72 (101)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 4688999999999999999999999998887764 4454
No 44
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.73 E-value=19 Score=24.00 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
...+.+.|+++.|=.|+|+.+++..++++...+-.
T Consensus 26 g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 60 (96)
T 1wx8_A 26 QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLI 60 (96)
T ss_dssp SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEE
Confidence 45789999999999999999999999987766543
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=40.67 E-value=30 Score=23.13 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=32.4
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 11 ~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~-~~Gk 48 (98)
T 1yx5_B 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 48 (98)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 4678999999999999999999999999888765 4454
No 46
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.56 E-value=70 Score=20.42 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=22.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEE
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVE 68 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~Vn 68 (157)
....--+|.++|..||++++++ || +|.+|+
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~ 46 (96)
T 2e44_A 17 KLQIRNIPPHLQWEVLDSLLVQ-YG-VVESCE 46 (96)
T ss_dssp CEEEEEECSSSCHHHHHHHHHH-HS-CEEEEE
T ss_pred EEEEEcCCCCCCHHHHHHHHHh-cC-CeEEEE
Confidence 4556668999999999999986 44 355554
No 47
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=40.47 E-value=40 Score=21.40 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=19.6
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
+|.++|..||++++++ || +|.+|+..
T Consensus 16 lp~~~t~~~l~~~f~~-~G-~v~~~~i~ 41 (92)
T 2dgv_A 16 LPFDFTWKMLKDKFNE-CG-HVLYADIK 41 (92)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEE
T ss_pred CCCCCCHHHHHHHHHh-cC-CEEEEEEE
Confidence 5778999999999988 55 45555543
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=40.21 E-value=20 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=31.9
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 28 ~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 65 (93)
T 2l7r_A 28 ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVL-LAGA 65 (93)
T ss_dssp SEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEE-ETTE
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEE-ECCE
Confidence 5688999999999999999999999998877654 4443
No 49
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=39.42 E-value=26 Score=23.09 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=30.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
..+.+.|+++.|=.|+|+.++...|+++...+-.
T Consensus 15 ~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~ 48 (88)
T 2hj8_A 15 RSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT 48 (88)
T ss_dssp CEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEE
Confidence 5678999999999999999999999998877654
No 50
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=39.02 E-value=36 Score=22.60 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=33.8
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
+.....++.|+++.|=.|+|+.++...|+++..-+-. ..|+
T Consensus 18 l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 58 (84)
T 2kk8_A 18 LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLI-VDGI 58 (84)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEE-ECCE
Confidence 3446788999999999999999999999998877754 4454
No 51
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=36.43 E-value=33 Score=22.24 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=29.8
Q ss_pred cEEEE-EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 37 NVVEF-HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 37 N~vtF-~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
...++ .|+++.|=.|+|+.++...++++...+-.
T Consensus 19 ~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~ 53 (89)
T 1wy8_A 19 KTCTIEDVSRKATIEELRERVWALFDVRPECQRLF 53 (89)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEE
T ss_pred ceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEE
Confidence 46789 59999999999999999999998877654
No 52
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.30 E-value=31 Score=25.30 Aligned_cols=35 Identities=6% Similarity=-0.032 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEe--cCC-CCHHHHHHHHHHHhCceeeEEE
Q psy5391 32 EPLPPNVVEFHV--PLA-MTNHDIKNYLEKIYNVTVKHVE 68 (157)
Q Consensus 32 ~~l~pN~vtF~V--p~~-mTK~DIK~YLEkiYnVkV~~Vn 68 (157)
-.++++.+.+.- +.+ .|+.|||+.+.+ || +|..|.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~-~G-~V~~Vd 50 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSN-HG-EIKWID 50 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCS-SC-CEEEEE
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHh-cC-CEEEEE
Confidence 456788888776 778 999999999987 77 566654
No 53
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.37 E-value=43 Score=24.08 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=33.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS 76 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~ 76 (157)
.....+.|+.+.|=.|+|+.|+...|+++...+-. ..|+.
T Consensus 41 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk~ 80 (125)
T 1j8c_A 41 KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLI-FAGKI 80 (125)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEE-ETTEE
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEE-ECCEE
Confidence 45689999999999999999999999998888764 45543
No 54
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.89 E-value=38 Score=23.12 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=30.7
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 39 VEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 39 vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
..+.|+.+.|=.|+|+.|++..++++...+-. ..|+
T Consensus 29 ~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 64 (106)
T 1wx7_A 29 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGK 64 (106)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEE-ETTE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 58999999999999999999999998887754 4443
No 55
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=34.26 E-value=70 Score=22.74 Aligned_cols=54 Identities=6% Similarity=0.125 Sum_probs=40.7
Q ss_pred EEEeeCCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceec
Q psy5391 25 MKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAE 79 (157)
Q Consensus 25 ~~LvR~~~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~ 79 (157)
+.+..++..-.....+..|+++.|=.|+|+-++.-.|++....+-. ..||.-.+
T Consensus 18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI-~~GKiL~D 71 (100)
T 1wju_A 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIV-INKKQLQL 71 (100)
T ss_dssp EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEE-ETTEECCT
T ss_pred EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEE-eCCeECCC
Confidence 3333333333457899999999999999999999999998877754 77775544
No 56
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=33.51 E-value=40 Score=21.19 Aligned_cols=36 Identities=3% Similarity=0.071 Sum_probs=30.6
Q ss_pred EEEE-ecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 39 VEFH-VPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 39 vtF~-Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.++. |+++.|=.|+|+.++...|+++...+-. ..|+
T Consensus 16 ~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~-~~g~ 52 (78)
T 2faz_A 16 HTVDSLSRLTKVEELRRKIQELFHVEPGLQRLF-YRGK 52 (78)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred EEEeccCCCCCHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 3788 9999999999999999999998887764 4453
No 57
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=33.00 E-value=40 Score=23.09 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=30.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 39 VEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 39 vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
..+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 34 ~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 69 (100)
T 1yqb_A 34 EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLI-FAGK 69 (100)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcChhhEEEE-ECCE
Confidence 58999999999999999999999998887764 4443
No 58
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.95 E-value=1e+02 Score=19.96 Aligned_cols=31 Identities=6% Similarity=0.129 Sum_probs=23.3
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 39 VEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 39 vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
..--+|.++|..||++++++.|| +|.+|+-.
T Consensus 13 ~V~nLp~~~t~~~l~~~F~~~~G-~v~~v~i~ 43 (104)
T 2dhg_A 13 FVGDLTPDVDDGMLYEFFVKVYP-SCRGGKVV 43 (104)
T ss_dssp EEECCCTTCCHHHHHHHHHHHCT-TEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHhCC-CeEEEEEE
Confidence 34447889999999999999787 45666543
No 59
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=32.29 E-value=48 Score=23.29 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=52.8
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceeccccccceecccCCCceeeeeeeecccccchhhHH
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSA 113 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~~~~~~R~~~~kqP~~k~a~~~~~~~l~~~~~~~~ 113 (157)
+.-....+.|+++.|=.|+|+.++...|+++...+-. ..|+.=.+. .. +..-..-.++++.+.-.+.-|.+..+
T Consensus 17 l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk~L~D~-~t----L~~ygI~~gstI~l~~~~~GG~~~~~ 90 (114)
T 2kdi_A 17 LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLI-WAGKQLEDG-RT----LSDYNIQRESTLHLVLRLRGGSMGGA 90 (114)
T ss_dssp TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEECCTT-CB----TTTTTCCSSCEEEEEECCCSSCCCSS
T ss_pred CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCEECCCC-Cc----HHHCCCCCCCEEEEEEEcCCCceeec
Confidence 3446788999999999999999999999999988865 455533221 11 11112234566655555556666555
Q ss_pred H----HHhHhhhh
Q psy5391 114 K----RLMKCIKL 122 (157)
Q Consensus 114 k----~~~~~~~~ 122 (157)
| .-++.+++
T Consensus 91 ~~~~~~~g~~~~~ 103 (114)
T 2kdi_A 91 ADEEELIRKAIEL 103 (114)
T ss_dssp CSSSHHHHHHHHS
T ss_pred cccccccCceEEE
Confidence 5 23445554
No 60
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.10 E-value=48 Score=21.68 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=20.3
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
+|.++|..||++++++ || +|.+|+..
T Consensus 24 lp~~~t~~~l~~~F~~-~G-~v~~v~i~ 49 (105)
T 2dh8_A 24 LDWSTTQETLRSYFSQ-YG-EVVDCVIM 49 (105)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEE
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEEe
Confidence 6788999999999987 55 56666543
No 61
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=32.01 E-value=38 Score=22.92 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=32.1
Q ss_pred EEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 38 VVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 38 ~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
..++.|+++.|=.|+|+.|+...|+++...+-. ..|+
T Consensus 26 ~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi-~~Gk 62 (94)
T 2kan_A 26 QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLY-YSGI 62 (94)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEE-ETTE
T ss_pred EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEE-ECCE
Confidence 688999999999999999999999998887764 4554
No 62
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=31.86 E-value=42 Score=23.24 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=32.6
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
-....+.|+++.|=.|+|+.+++..++++...+-. ..|+
T Consensus 45 g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi-~~Gk 83 (111)
T 2ojr_A 45 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 83 (111)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEE-ETTE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEE-ECCE
Confidence 35678999999999999999999999998877754 4443
No 63
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=31.50 E-value=41 Score=20.91 Aligned_cols=26 Identities=0% Similarity=0.144 Sum_probs=19.6
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
-+|.++|..||++++++ || +|.+|.-
T Consensus 14 nl~~~~~~~~l~~~f~~-~G-~i~~v~i 39 (85)
T 3mdf_A 14 GLAEEVDDKVLHAAFIP-FG-DITDIQI 39 (85)
T ss_dssp CCCTTCCHHHHHHHHGG-GS-CEEEEEC
T ss_pred CCCCCCCHHHHHHHHhc-cC-CEEEEEE
Confidence 36778999999999977 66 5666654
No 64
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=31.49 E-value=38 Score=23.60 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=34.0
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
+.-...++.|+++.|=.|+|+.|+...|+++...+-. ..|+
T Consensus 43 L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk 83 (115)
T 1we7_A 43 LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQ-YEGI 83 (115)
T ss_dssp CSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEE-ETTE
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE-ECCE
Confidence 3456889999999999999999999999998877765 3444
No 65
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=31.46 E-value=57 Score=22.10 Aligned_cols=28 Identities=4% Similarity=0.173 Sum_probs=21.7
Q ss_pred EEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 41 FHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 41 F~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
=-+|.++|..||++++++ || +|.+|+-.
T Consensus 11 ~nLp~~~te~~L~~~F~~-~G-~v~~v~i~ 38 (115)
T 4f25_A 11 KNLDKSIDNKALYDTFSA-FG-NILSCKVV 38 (115)
T ss_dssp ESCCTTCCHHHHHHHHGG-GS-CEEEEEEE
T ss_pred CCCCCCCCHHHHHHHHhc-cC-CEEEEEEe
Confidence 347889999999999976 66 47777654
No 66
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=37.04 E-value=10 Score=23.87 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=29.0
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
...++.|+++.|=.|+|+.+++..|+++...+-.
T Consensus 11 ~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~ 44 (76)
T 3b1l_X 11 YGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVI 44 (76)
Confidence 3567899999999999999999999998776653
No 67
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=30.78 E-value=70 Score=20.29 Aligned_cols=27 Identities=4% Similarity=0.048 Sum_probs=20.1
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
-+|.++|..||++++++ || +|.+|+-.
T Consensus 23 nlp~~~~~~~l~~~F~~-~G-~i~~v~i~ 49 (95)
T 2ywk_A 23 NLEARVREEILYELFLQ-AG-PLTKVTIC 49 (95)
T ss_dssp CCCTTCCHHHHHHHHGG-GS-CEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHh-cC-CEEEEEEE
Confidence 36888999999999987 55 46665543
No 68
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=30.62 E-value=44 Score=21.22 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 41 FHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 41 F~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
--+|.++|..||++++++ || +|.+|...
T Consensus 21 ~nlp~~~t~~~l~~~f~~-~G-~v~~v~i~ 48 (95)
T 2cqc_A 21 FGLSLYTTERDLREVFSK-YG-PIADVSIV 48 (95)
T ss_dssp ESCCSSCCHHHHHHHHHT-TS-CEEEEEEE
T ss_pred ECCCCCCCHHHHHHHHHh-cC-CeeEEEEE
Confidence 346888999999999987 65 46666543
No 69
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=30.16 E-value=1.1e+02 Score=19.38 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=30.8
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHH---hCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKI---YNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEki---YnVkV~~VnT~I~~gk 75 (157)
.....+.|+++.|=.|+|+.++.. -|+++...+-. ..|+
T Consensus 15 g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi-~~Gk 56 (85)
T 2wyq_A 15 QQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLI-YAGK 56 (85)
T ss_dssp SCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEE-ETTE
T ss_pred CCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEE-ECCE
Confidence 346789999999999999999998 56887776654 4443
No 70
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.82 E-value=37 Score=21.78 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=19.7
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
+|.++|..||++++++ || +|.+|+.
T Consensus 18 Lp~~~t~~~l~~~F~~-~G-~v~~v~~ 42 (92)
T 2dgt_A 18 ISPTCTNQELRAKFEE-YG-PVIECDI 42 (92)
T ss_dssp CCSSCCHHHHHHHHHT-TS-CCCEEEE
T ss_pred CCCCCCHHHHHHHHHh-cC-CeEEEEE
Confidence 5788999999999988 66 4666654
No 71
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=29.59 E-value=70 Score=19.83 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=20.2
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
-+|.++|..||++++++ || +|.+|.-.
T Consensus 11 nlp~~~t~~~l~~~F~~-~G-~i~~~~i~ 37 (88)
T 4a8x_A 11 RLTRNVTKDHIMEIFST-YG-KIKMIDMP 37 (88)
T ss_dssp CCCTTCCHHHHHHHHHT-TS-CEEEEECC
T ss_pred CCCCCCCHHHHHHHHHh-CC-CEEEEEEE
Confidence 46889999999999987 65 55555543
No 72
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=28.86 E-value=54 Score=22.11 Aligned_cols=34 Identities=18% Similarity=0.255 Sum_probs=29.3
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
....+.|+.+.|=.|+|+.|+...|+++..-+-.
T Consensus 27 ~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~ 60 (95)
T 1v86_A 27 TKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVM 60 (95)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCB
T ss_pred EEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEE
Confidence 4678999999999999999999999987765544
No 73
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.05 E-value=69 Score=20.68 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=20.6
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
-+|.++|..||++++++ || +|.+|+..
T Consensus 24 nlp~~~t~~~l~~~F~~-~G-~i~~v~i~ 50 (100)
T 2do4_A 24 GLPFSCTKEELEEICKA-HG-TVKDLRLV 50 (100)
T ss_dssp SCCTTCCHHHHHHHHTT-TS-CEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHh-CC-CeEEEEEE
Confidence 46889999999999987 55 46666544
No 74
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.01 E-value=70 Score=21.12 Aligned_cols=29 Identities=3% Similarity=0.122 Sum_probs=22.0
Q ss_pred EEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 40 EFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 40 tF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
.--+|.++|..||++++++ || +|.+|+..
T Consensus 30 V~nl~~~~t~~~l~~~F~~-~G-~i~~v~i~ 58 (109)
T 1x4g_A 30 CGGIASGLTDQLMRQTFSP-FG-QIMEIRVF 58 (109)
T ss_dssp EECCSSCCCHHHHHHHHHH-HS-CEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHHh-cC-CeEEEEEe
Confidence 3446788999999999986 77 67776543
No 75
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=27.92 E-value=77 Score=19.67 Aligned_cols=29 Identities=14% Similarity=0.413 Sum_probs=21.9
Q ss_pred EecCCCCHHHHHHHHHHHh---Cc------eeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIY---NV------TVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiY---nV------kV~~VnT~ 70 (157)
-+|.++|..||++++++.- |+ +|.+|+..
T Consensus 13 nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~ 50 (87)
T 2hzc_A 13 NIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN 50 (87)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec
Confidence 3577899999999998764 65 67766654
No 76
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=27.87 E-value=53 Score=21.41 Aligned_cols=26 Identities=15% Similarity=0.503 Sum_probs=20.2
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
-+|.++|..||++++++ || +|.+|+.
T Consensus 22 nlp~~~t~~~l~~~F~~-~G-~i~~v~i 47 (107)
T 2cph_A 22 NIPFQANQREIRELFST-FG-ELKTVRL 47 (107)
T ss_dssp SCCTTCCHHHHHHHHHT-TS-CEEEEEC
T ss_pred CCCCcCCHHHHHHHHHc-cC-CeEEEEE
Confidence 36889999999999987 66 5666654
No 77
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.55 E-value=37 Score=22.01 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=20.1
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
-+|.++|..||++++++ || +|.+|+.
T Consensus 17 nlp~~~t~~~l~~~F~~-~G-~i~~v~i 42 (99)
T 2dgs_A 17 GIPHNCGETELREYFKK-FG-VVTEVVM 42 (99)
T ss_dssp SCCSSCCHHHHHHHHSS-SS-CEEEEEE
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEE
Confidence 36789999999999987 55 5666654
No 78
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=26.49 E-value=1.1e+02 Score=21.75 Aligned_cols=43 Identities=9% Similarity=0.168 Sum_probs=35.6
Q ss_pred CCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeee-cCcce
Q psy5391 35 PPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLE-NATSM 77 (157)
Q Consensus 35 ~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~-~gk~K 77 (157)
.-...++.|+++.|=.|+|+.++...|+++..-+-... .|+.=
T Consensus 11 ~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L 54 (159)
T 3rt3_B 11 AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVAL 54 (159)
T ss_dssp TSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCC
Confidence 34568899999999999999999999999988776645 56543
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=26.45 E-value=73 Score=21.53 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 41 FHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 41 F~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
=-+|.++|..||++++++ || +|.+|+..
T Consensus 17 ~~Lp~~~te~~L~~~F~~-~G-~v~~v~i~ 44 (103)
T 1s79_A 17 KGFPTDATLDDIKEWLED-KG-QVLNIQMR 44 (103)
T ss_dssp ECCCTTCCHHHHHHHHHT-SS-CEEEEEEE
T ss_pred ECCCCCCCHHHHHHHHhh-cC-CEEEEEEE
Confidence 346889999999999986 77 57777654
No 80
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=25.64 E-value=60 Score=21.63 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=21.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 39 VEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 39 vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
..=-+|.++|..||++.+++ || +|.+|+-.
T Consensus 23 fV~nLp~~~te~~L~~~F~~-~G-~I~~v~i~ 52 (99)
T 4fxv_A 23 IVNYLPQNMTQDELRSLFSS-IG-EVESAKLI 52 (99)
T ss_dssp EEESCCTTCCHHHHHHHHHT-TS-CEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHh-cC-CEEEeEee
Confidence 33447889999999999986 66 56666543
No 81
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=25.29 E-value=73 Score=22.16 Aligned_cols=38 Identities=8% Similarity=0.067 Sum_probs=32.2
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+++.|=.|+|+.++...|+++...+-. ..|+
T Consensus 11 ~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~-~~g~ 48 (152)
T 3b08_A 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 48 (152)
T ss_dssp CEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEE-ECCe
Confidence 4678999999999999999999999998877755 4454
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.27 E-value=1.1e+02 Score=19.70 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=19.2
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
-+|.++|..||++++++ || +|.+|..
T Consensus 20 nLp~~~t~~~l~~~f~~-~G-~i~~v~i 45 (103)
T 2dnm_A 20 NLTYRTSPDSLRRVFEK-YG-RVGDVYI 45 (103)
T ss_dssp SCCTTCCHHHHHHHHTT-TS-CEEEEEC
T ss_pred CCCCCCCHHHHHHHHHh-cC-CEEEEEE
Confidence 36788999999999986 45 3555543
No 83
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=25.17 E-value=31 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.251 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEec----CCCCHHHHHHHHHHHhCcee
Q psy5391 32 EPLPPNVVEFHVP----LAMTNHDIKNYLEKIYNVTV 64 (157)
Q Consensus 32 ~~l~pN~vtF~Vp----~~mTK~DIK~YLEkiYnVkV 64 (157)
+.|.-.++.|.|- ...+|.||++-|.++|+++.
T Consensus 16 ~LL~Rke~v~dV~HpG~aTpsr~eIrekLAk~y~~~~ 52 (135)
T 3u5c_Y 16 PLLARKQFVVDVLHPNRANVSKDELREKLAEVYKAEK 52 (135)
T ss_dssp GGGTEEEEEEEEECSSSCCCCHHHHHHHHHTTTTSCG
T ss_pred cCcCcEEEEEEEEeCCCCCCCHHHHHHHHHHHHCCCC
Confidence 5677778888885 35689999999999999863
No 84
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.15 E-value=63 Score=21.00 Aligned_cols=26 Identities=4% Similarity=-0.042 Sum_probs=19.8
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
-+|.++|..||++++++ || +|.+|+-
T Consensus 22 nlp~~~t~~~l~~~F~~-~G-~i~~v~i 47 (105)
T 1x5u_A 22 GLDEKVSEPLLWELFLQ-AG-PVVNTHM 47 (105)
T ss_dssp CCCTTCCHHHHHHHHHT-TS-CEEEEEC
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEE
Confidence 36889999999999987 45 5666653
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=24.70 E-value=1.5e+02 Score=19.65 Aligned_cols=35 Identities=20% Similarity=0.103 Sum_probs=30.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeee
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTL 71 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I 71 (157)
-...++|++++|=.|+|+-|+...|+++..-+-..
T Consensus 19 ~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~ 53 (95)
T 1v6e_A 19 FRSEKRYSRSLTIAEFKCKLELVVGSPASCMELEL 53 (95)
T ss_dssp SCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEE
T ss_pred eeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEE
Confidence 35889999999999999999999999988777653
No 86
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=24.67 E-value=1.5e+02 Score=20.86 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=41.5
Q ss_pred CcEEEEeeCCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcceec
Q psy5391 22 NFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAE 79 (157)
Q Consensus 22 nf~~~LvR~~~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~KR~ 79 (157)
.+.-..|+. +.-.++++.|.++.|=.|+|+-++.-.|+++...+- +..|+.=++
T Consensus 20 ~mIqI~Vk~---~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrL-if~Gk~LkD 73 (93)
T 3plu_A 20 HMIEVVVND---RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVL-QKGGSVLKD 73 (93)
T ss_dssp CEEEEEEEC---TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEE-EETTEECCT
T ss_pred ceEEEEEEC---CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEE-EeCCEEccC
Confidence 333344554 466889999999999999999999999999998876 456655443
No 87
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.39 E-value=95 Score=20.19 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=20.3
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
+|.++|..||++++++ || |.+|+..
T Consensus 23 lp~~~t~~~l~~~F~~-~G--i~~v~i~ 47 (104)
T 1wi8_A 23 LPYDVTEESIKEFFRG-LN--ISAVRLP 47 (104)
T ss_dssp CCSSCCHHHHHHHTTT-SC--EEEEECC
T ss_pred CCCcCCHHHHHHHHHH-CC--ceEEEEe
Confidence 6889999999999986 47 7777654
No 88
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=24.21 E-value=1.6e+02 Score=20.88 Aligned_cols=41 Identities=15% Similarity=0.033 Sum_probs=34.2
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
+.-...++.|+++.|=.|+|+.++...|+++..-+-. ..|+
T Consensus 89 ~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~G~ 129 (159)
T 3rt3_B 89 NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLT-FEGK 129 (159)
T ss_dssp TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEE-ETTE
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEE-ECCe
Confidence 3457789999999999999999999999998877654 5554
No 89
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=23.88 E-value=1.7e+02 Score=19.56 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=33.6
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
+.-..++|.|.++.|=.+||+.++...|+++...+- +..|+
T Consensus 29 ~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrL-if~Gk 69 (97)
T 1wyw_B 29 QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRF-LFEGQ 69 (97)
T ss_dssp TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEE-EETTE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEE-EECCe
Confidence 344678999999999999999999999999887764 35554
No 90
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=23.41 E-value=1.2e+02 Score=20.91 Aligned_cols=38 Identities=18% Similarity=0.153 Sum_probs=32.9
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeee
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTL 71 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I 71 (157)
+.....+.+|++++|=.++|+-||...|+++..-+-..
T Consensus 24 ~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~ 61 (97)
T 2kj6_A 24 LKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALEL 61 (97)
T ss_dssp SSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEE
T ss_pred CCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEE
Confidence 44456899999999999999999999999998877653
No 91
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.37 E-value=79 Score=21.99 Aligned_cols=39 Identities=8% Similarity=0.052 Sum_probs=32.7
Q ss_pred CcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 36 pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
.....+.|+++.|=.|+|+.+++..|+++...+-. ..|+
T Consensus 86 g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~-~~g~ 124 (152)
T 3b08_A 86 GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGK 124 (152)
T ss_dssp SCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTE
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEE-ECCE
Confidence 35788999999999999999999999998877754 4443
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=23.22 E-value=95 Score=21.01 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=21.4
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
-+|.++|..||++++++ || +|.+|+-.
T Consensus 7 nlp~~~t~~~l~~~f~~-~G-~i~~v~i~ 33 (166)
T 3md3_A 7 NLDKAITEDILKQYFQV-GG-PIANIKIM 33 (166)
T ss_dssp EEETTCCHHHHHHHHGG-GS-CEEEEEEE
T ss_pred CCCCcCCHHHHHHHHHh-cC-CeEEEEEE
Confidence 47899999999999986 56 57777654
No 93
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=22.89 E-value=70 Score=21.92 Aligned_cols=27 Identities=11% Similarity=0.266 Sum_probs=20.6
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
-+|.++|..||++++++ || +|.+|+-.
T Consensus 10 nlp~~~~~~~l~~~f~~-~G-~i~~v~i~ 36 (168)
T 1b7f_A 10 YLPQDMTDRELYALFRA-IG-PINTCRIM 36 (168)
T ss_dssp CCCTTCCHHHHHHHHHT-TS-CEEEEECC
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeeEEEEE
Confidence 46889999999999987 55 46666544
No 94
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=22.76 E-value=76 Score=20.58 Aligned_cols=27 Identities=15% Similarity=0.504 Sum_probs=19.9
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
-+|.++|..||++++++ || +|.+|+-.
T Consensus 22 nlp~~~t~~~l~~~f~~-~G-~v~~v~i~ 48 (103)
T 2cq3_A 22 NIPFRFRDPDLRQMFGQ-FG-KILDVEII 48 (103)
T ss_dssp SCCTTCCHHHHHHHGGG-TS-CEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeEEEEEE
Confidence 36788999999999987 54 45555543
No 95
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.34 E-value=51 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=20.8
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
+|.++|..||++++++. + |.+|+..
T Consensus 23 Lp~~~t~~~l~~~F~~~-g--i~~v~i~ 47 (103)
T 2dng_A 23 LPFNTVQGDIDAIFKDL-S--IRSVRLV 47 (103)
T ss_dssp CCTTCCHHHHHHHTTTS-C--EEEEEEE
T ss_pred CCCCCCHHHHHHHHHhC-C--ceEEEEe
Confidence 67899999999999887 6 7777654
No 96
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=21.54 E-value=70 Score=20.98 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=30.6
Q ss_pred cEEEEEecCC-----CCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLA-----MTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~-----mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
....+.|+.+ .|=.|+|+.|+...|+++...+-. ..|+
T Consensus 17 ~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~-~~Gk 59 (92)
T 1wxv_A 17 EKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLI-FKGK 59 (92)
T ss_dssp SEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEE-ETTE
T ss_pred EEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEE-ECCe
Confidence 3567899995 999999999999999998877654 4444
No 97
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=21.50 E-value=41 Score=23.10 Aligned_cols=27 Identities=33% Similarity=0.743 Sum_probs=20.0
Q ss_pred cccceeeCCceec------------ceeEeeeecceeee
Q psy5391 124 NGLFIKINPIGTK------------DLLVLGVWGALSLV 150 (157)
Q Consensus 124 ~~~~~~~np~~tk------------~~~~~~~~~~~~~~ 150 (157)
+||++.|.|.++| ..+++|...++||-
T Consensus 24 ~GL~L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~ 62 (88)
T 3jtz_A 24 HGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISLS 62 (88)
T ss_dssp TTEEEEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHH
T ss_pred CceEEEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHH
Confidence 6899999998765 45677777776663
No 98
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=21.47 E-value=78 Score=21.73 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=31.8
Q ss_pred cEEEEEecC-CCCHHHHHHHHHHHhCceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPL-AMTNHDIKNYLEKIYNVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~-~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk 75 (157)
..+.+.|++ +.|=.|+|+.++...|+++...+-. ..|+
T Consensus 41 ~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~-~~Gk 79 (111)
T 1we6_A 41 QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLS-GKAG 79 (111)
T ss_dssp CCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEE-CSSS
T ss_pred cEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEE-ECCE
Confidence 567899997 9999999999999999998877755 3444
No 99
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=21.31 E-value=85 Score=20.36 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=24.9
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEee
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVEST 70 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~ 70 (157)
.+..-..-..|.++|..||++++++ || +|.+|+..
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~-~G-~i~~v~i~ 44 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQ-YG-EVVDVFIP 44 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTT-TS-CEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-cC-CEEEEEEe
Confidence 3445555668899999999999987 66 46666543
No 100
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=21.24 E-value=1.1e+02 Score=21.11 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=22.9
Q ss_pred ecCCCCHHHHHHHHHHH---hCc------eeeEEEee
Q psy5391 43 VPLAMTNHDIKNYLEKI---YNV------TVKHVEST 70 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEki---YnV------kV~~VnT~ 70 (157)
+|.++|..||++++++. .|+ +|.++++.
T Consensus 12 Lp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~ 48 (172)
T 2g4b_A 12 IPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN 48 (172)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE
T ss_pred CCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec
Confidence 68899999999999986 365 77887764
No 101
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=21.12 E-value=62 Score=19.94 Aligned_cols=26 Identities=4% Similarity=0.210 Sum_probs=19.4
Q ss_pred EecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 42 HVPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 42 ~Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
-+|.++|..||++++++ || +|.+|.-
T Consensus 8 nlp~~~t~~~l~~~f~~-~G-~i~~~~i 33 (83)
T 3md1_A 8 DLNVNVDDETLRNAFKD-FP-SYLSGHV 33 (83)
T ss_dssp CCCTTCCHHHHHHHHTT-ST-TEEEEEE
T ss_pred CCCCCCCHHHHHHHHHh-cC-CeeEEEE
Confidence 36788999999999976 55 5666544
No 102
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=21.06 E-value=80 Score=21.70 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=21.2
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEeee
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVESTL 71 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I 71 (157)
+|.++|..||++++++ || +|.+|+-..
T Consensus 11 Lp~~~te~~l~~~F~~-~G-~i~~v~i~~ 37 (175)
T 3nmr_A 11 VPRTWSEKDLRELFEQ-YG-AVYEINVLR 37 (175)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHh-CC-CEEEEEEEe
Confidence 5788999999999987 66 477776553
No 103
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=20.75 E-value=96 Score=22.66 Aligned_cols=42 Identities=10% Similarity=0.082 Sum_probs=34.7
Q ss_pred CCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeeecCcc
Q psy5391 34 LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATS 76 (157)
Q Consensus 34 l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~~gk~ 76 (157)
+.-....+.|+++.|=.|+|+.++...|+++..-+-. ..|+.
T Consensus 28 ~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~-~~g~~ 69 (172)
T 3u30_A 28 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLI-FAGKQ 69 (172)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEE-ETTEE
T ss_pred CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEE-ECCcc
Confidence 3445688999999999999999999999999887655 55643
No 104
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=20.73 E-value=47 Score=23.75 Aligned_cols=27 Identities=44% Similarity=0.767 Sum_probs=20.3
Q ss_pred cccceeeCCceec------------ceeEeeeecceeee
Q psy5391 124 NGLFIKINPIGTK------------DLLVLGVWGALSLV 150 (157)
Q Consensus 124 ~~~~~~~np~~tk------------~~~~~~~~~~~~~~ 150 (157)
+||++-|.|.|+| ..+++|.+.++||.
T Consensus 24 ~GL~L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa 62 (108)
T 3ju0_A 24 FGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLA 62 (108)
T ss_dssp TTEEEEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHH
T ss_pred CceEEEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHH
Confidence 6899999998875 45677777777763
No 105
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=20.52 E-value=1.7e+02 Score=20.02 Aligned_cols=51 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred cCcEEEE-eeCCCCCCCcEEEEEecCCCCHHHHHHHHHHHhCceeeEEEeeee
Q psy5391 21 PNFWMKL-VRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLE 72 (157)
Q Consensus 21 Pnf~~~L-vR~~~~l~pN~vtF~Vp~~mTK~DIK~YLEkiYnVkV~~VnT~I~ 72 (157)
|+-.+.| |+. ........+.+|++++|=.++|+-||...|+++..-+-...
T Consensus 12 ~~~~v~l~It~-s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~ 63 (95)
T 2kjr_A 12 KSDFIKVNVSN-SHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVF 63 (95)
T ss_dssp CCCEEEEEEEE-SSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEE
T ss_pred CCCeEEEEEEE-CCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEe
Confidence 3333444 454 23333478999999999999999999999999988887654
No 106
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=20.47 E-value=90 Score=19.98 Aligned_cols=25 Identities=8% Similarity=0.353 Sum_probs=18.9
Q ss_pred ecCCCCHHHHHHHHHHHhCceeeEEEe
Q psy5391 43 VPLAMTNHDIKNYLEKIYNVTVKHVES 69 (157)
Q Consensus 43 Vp~~mTK~DIK~YLEkiYnVkV~~VnT 69 (157)
+|.++|..||++++++ || +|.+|+-
T Consensus 16 lp~~~t~~~l~~~F~~-~G-~i~~v~i 40 (99)
T 1whw_A 16 LSYTSSEEDLEKLFSA-YG-PLSELHY 40 (99)
T ss_dssp CCTTCCHHHHHHHHHT-TS-CEEEEEC
T ss_pred CCCCCCHHHHHHHHHh-cC-CEeEEEE
Confidence 6788999999999986 55 5555543
No 107
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.03 E-value=1.6e+02 Score=19.28 Aligned_cols=38 Identities=11% Similarity=0.095 Sum_probs=30.8
Q ss_pred cEEEEEecCCCCHHHHHHHHHHHh--CceeeEEEeeeecCc
Q psy5391 37 NVVEFHVPLAMTNHDIKNYLEKIY--NVTVKHVESTLENAT 75 (157)
Q Consensus 37 N~vtF~Vp~~mTK~DIK~YLEkiY--nVkV~~VnT~I~~gk 75 (157)
..+++.|+++.|=.|+|+.|+... ++++...+-. ..|+
T Consensus 20 ~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi-~~Gk 59 (93)
T 1wgd_A 20 RDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLI-YSGK 59 (93)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEE-ETTE
T ss_pred EEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEE-ECCE
Confidence 467777889999999999999998 9888777654 4554
Done!