RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5391
(157 letters)
>gnl|CDD|144021 pfam00276, Ribosomal_L23, Ribosomal protein L23.
Length = 90
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 36 PNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVES 69
PN F V +IK+ +E I+ V V+ V +
Sbjct: 19 PNQYVFIVDKKANKTEIKDAVEHIFGVKVEKVNT 52
>gnl|CDD|235586 PRK05738, rplW, 50S ribosomal protein L23; Reviewed.
Length = 92
Score = 31.6 bits (73), Expect = 0.038
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N F V T +IK +EK++ V V+ V
Sbjct: 21 NKYVFEVAPDATKPEIKAAVEKLFGVKVESV 51
>gnl|CDD|132675 TIGR03636, L23_arch, archaeal ribosomal protein L23. This model
describes the archaeal ribosomal protein L23P and
rigorously excludes the bacterial counterpart L23. In
order to capture every known instance of archaeal L23P,
the trusted cutoff is set lower than a few of the
highest scoring eukaryotic cytosolic ribosomal
counterparts [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 77
Score = 31.0 bits (71), Expect = 0.051
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + F V T DIK +EK+++V V+ V
Sbjct: 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKV 45
>gnl|CDD|233041 TIGR00596, rad1, DNA repair protein (rad1). All proteins in this
family for which functions are known are components in a
multiprotein endonuclease complex (usually made up of
Rad1 and Rad10 homologs). This complex is used primarily
for nucleotide excision repair but also for some aspects
of recombinational repair in some species. Most Archaeal
species also have homologs of these genes, but the
function of these Archaeal genes is not known, so we
have set our cutoff to only pick up the eukaryotic
genes.This family is based on the phylogenomic analysis
of JA Eisen (1999, Ph.D. Thesis, Stanford Universit [DNA
metabolism, DNA replication, recombination, and repair].
Length = 814
Score = 31.7 bits (72), Expect = 0.16
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 21 PNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLENATSMAEW 80
P F +++ S E V+E HV L + I++ + + N + E +N E
Sbjct: 98 PRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAILECLNKCIA--ELKRKNPELDMED 155
Query: 81 VS 82
+
Sbjct: 156 WN 157
>gnl|CDD|237750 PRK14548, PRK14548, 50S ribosomal protein L23P; Provisional.
Length = 84
Score = 28.3 bits (64), Expect = 0.60
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + F V T DIK +E++++V V+ V
Sbjct: 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKV 52
>gnl|CDD|223167 COG0089, RplW, Ribosomal protein L23 [Translation, ribosomal
structure and biogenesis].
Length = 94
Score = 28.3 bits (64), Expect = 0.74
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N F V T +IK +E+++ V V+ V
Sbjct: 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKV 52
>gnl|CDD|239429 cd03313, enolase, Enolase: Enolases are homodimeric enzymes that
catalyse the reversible dehydration of
2-phospho-D-glycerate to phosphoenolpyruvate as part of
the glycolytic and gluconeogenesis pathways. The
reaction is facilitated by the presence of metal ions.
Length = 408
Score = 28.6 bits (65), Expect = 1.3
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ +RL K I+ + N L IK+N IGT
Sbjct: 315 TNPERLKKGIEKKAANALLIKVNQIGT 341
>gnl|CDD|109180 pfam00113, Enolase_C, Enolase, C-terminal TIM barrel domain.
Length = 296
Score = 28.6 bits (64), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 110 ITSAKRLMKCI--KLQNGLFIKINPIGT 135
+T+ KR+ K I K N L +K+N IG+
Sbjct: 186 VTNPKRIAKAIEKKACNSLLLKVNQIGS 213
>gnl|CDD|234617 PRK00077, eno, enolase; Provisional.
Length = 425
Score = 28.5 bits (65), Expect = 1.6
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ KRL K I+ N + IK+N IGT
Sbjct: 315 TNTKRLKKGIEKGAANSILIKVNQIGT 341
>gnl|CDD|215186 PLN02327, PLN02327, CTP synthase.
Length = 557
Score = 28.5 bits (64), Expect = 1.8
Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 31/104 (29%)
Query: 29 RSKEPLPPNVVE----------------------FHVPLAMTNHDIKNYLEKIYNVTVKH 66
RS +PL NV E +HVPL + + + K+ N+
Sbjct: 217 RSTKPLEENVKEKLSQFCHVPAENILNLHDVSNIWHVPLLLRDQKAHEAILKVLNLLSVA 276
Query: 67 VESTLENATSMAEWVSWLAFQMTLQPTRTV----STSLFESYLS 106
E LE T+ AE + +P R T L +SYLS
Sbjct: 277 REPDLEEWTARAE-----SCDNLTEPVRIAMVGKYTGLSDSYLS 315
>gnl|CDD|213580 TIGR01060, eno, phosphopyruvate hydratase. Alternate name: enolase
[Energy metabolism, Glycolysis/gluconeogenesis].
Length = 425
Score = 27.7 bits (62), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 110 ITSAKRLMKCIK--LQNGLFIKINPIGT 135
+T+ + L + I+ + N + IK N IGT
Sbjct: 315 VTNTEILREGIEMGVANSILIKPNQIGT 342
>gnl|CDD|223226 COG0148, Eno, Enolase [Carbohydrate transport and metabolism].
Length = 423
Score = 27.6 bits (62), Expect = 2.8
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ KRL K I+ N + IK N IGT
Sbjct: 314 TNPKRLKKGIEKGAANAILIKPNQIGT 340
>gnl|CDD|176971 CHL00030, rpl23, ribosomal protein L23.
Length = 93
Score = 26.0 bits (58), Expect = 4.7
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVES 69
N F V T +IK+++E + V V V S
Sbjct: 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 27.0 bits (60), Expect = 5.0
Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 9/95 (9%)
Query: 48 TNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESYLSS 107
D++ + +N + +E T EN +AEW+ L + + E +S+
Sbjct: 487 EYLDLEPGVPSGFNPF-EILEDTDENREFLAEWLVKLLAHEGISL-----SPAEERAISA 540
Query: 108 GI--ITSAKRLMKCIK-LQNGLFIKINPIGTKDLL 139
I + +A + + L L IK P L
Sbjct: 541 AINNLATAPKEDRTFSDLIELLGIKERPNSLASRL 575
>gnl|CDD|226478 COG3969, COG3969, Predicted phosphoadenosine phosphosulfate
sulfotransferase [General function prediction only].
Length = 407
Score = 26.6 bits (59), Expect = 6.4
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 56 LEKIYNVTVKHVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFESY 104
E Y+ T+ +V+ E+ + E W+ +T Q + S ++
Sbjct: 66 WEAQYSCTIDYVQEMRESYHDVIETFYWVCLPLTTQ----NALSQYQPE 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,832,856
Number of extensions: 673898
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 20
Length of query: 157
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 68
Effective length of database: 6,990,096
Effective search space: 475326528
Effective search space used: 475326528
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.8 bits)