RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5391
(157 letters)
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 32.1 bits (73), Expect = 0.032
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + F+V T IK+ EK+YNV V+ V
Sbjct: 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSV 118
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.036
Identities = 25/170 (14%), Positives = 49/170 (28%), Gaps = 41/170 (24%)
Query: 13 NPQLRIFLPN--FWMKLVRSKEP-------------LPPNV---VEFHVPLAMTNHDIKN 54
+ +++ + FW+ L P + PN + + + H I+
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 55 YLEKIYNVTVKHVES--TLENATSMAEWVSWL--AFQM---TLQPTRTVSTSLFESYLSS 107
L ++ + L N + AF + L TR + F S ++
Sbjct: 233 ELRRLLKSK-PYENCLLVLLNV-----QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 108 GIITSAKRLMKCIKLQN-GLFIKINPIGTKDL---------LVLGVWGAL 147
I+ M + L +K +DL L +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Score = 26.0 bits (56), Expect = 6.8
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 12/62 (19%)
Query: 7 PIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKH 66
P Y++ + FLP L+ SK +++ +A+ D E I+ K
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKY---TDLLR----IALMAED-----EAIFEEAHKQ 586
Query: 67 VE 68
V+
Sbjct: 587 VQ 588
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 32.3 bits (73), Expect = 0.041
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + F V + I+ + + V V+ V
Sbjct: 132 NSLLFTVDVRADKKMIREAISNFFGVKVRKV 162
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB:
1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S*
1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S*
1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Length = 85
Score = 30.7 bits (70), Expect = 0.052
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N ++F V + ++ + +E+ Y+VTV+ V
Sbjct: 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQV 53
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X
3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 1s1i_T 3jyw_T
Length = 142
Score = 31.4 bits (71), Expect = 0.066
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N++ F V + + IK ++++Y V V V
Sbjct: 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKV 110
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A
{Yersinia pestis} PDB: 3rmp_A
Length = 88
Score = 29.4 bits (67), Expect = 0.17
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 15/59 (25%)
Query: 110 ITSAKRLMKCIKLQ--NGLFIKINPIGTK------------DLLVLGVWGALSLVKTAR 154
I + K K K+ +GL++ + P G++ + LG + A+SL AR
Sbjct: 8 IRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAISL-SDAR 65
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba
histolytica}
Length = 441
Score = 30.2 bits (69), Expect = 0.23
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 12/63 (19%)
Query: 77 MAE--WVSWLAFQMTLQPTRTVSTSLFESYLSSGIITSAKRLMKCIKLQ--NGLFIKINP 132
AE W +W F + + V L +T+ R+ + N + IK+N
Sbjct: 304 FAEDDWAAWNKFTVEHGNFQIVGDDLL--------VTNPARVQMAMDKNACNSVLIKVNQ 355
Query: 133 IGT 135
IGT
Sbjct: 356 IGT 358
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein;
1.60A {Pectobacterium atrosepticum}
Length = 108
Score = 29.1 bits (66), Expect = 0.27
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 110 ITSAKRLMKCIKLQ--NGLFIKINPIGTK------------DLLVLGVWGALSLVKTAR 154
+ +AK L K KL G+ + ++P G+K LL LGV+ A+SL AR
Sbjct: 8 VKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSL-ADAR 65
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA,
transfer RNA, 23S ribosomal subunit, ribosome recycling
factor, RRF, ribosome; 3.00A {Escherichia coli} PDB:
3fik_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T*
3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M
3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T 1vs6_T ...
Length = 93
Score = 28.6 bits (65), Expect = 0.31
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + V T +IK ++K++ V V+ V
Sbjct: 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVV 58
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 29.1 bits (65), Expect = 0.42
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + F V + H IK ++K+Y++ V V
Sbjct: 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKV 124
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R
2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q*
1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U
1vow_U 1voy_U 1vp0_U
Length = 95
Score = 28.3 bits (64), Expect = 0.46
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
V F V T +IK+ +++ + V V +
Sbjct: 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGI 53
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation,
mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T
3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W
2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X
2wdj_X 2wdl_X ...
Length = 92
Score = 28.3 bits (64), Expect = 0.47
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
F V T +IKN +E + V V V
Sbjct: 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKV 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.66
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 15/40 (37%)
Query: 57 EKIYNVTVKHVESTL-----ENATSMAEWVSWLAFQMTLQ 91
EK +K ++++L ++A + LA + T++
Sbjct: 18 EK---QALKKLQASLKLYADDSAPA-------LAIKATME 47
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 27.9 bits (62), Expect = 1.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + F V L IK ++K+Y++ K V
Sbjct: 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKV 120
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei}
SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A
2pu0_A 2pu1_A* 1oep_A
Length = 432
Score = 28.2 bits (64), Expect = 1.0
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ +R+ I+ + N L +KIN IGT
Sbjct: 326 TNTERIKMAIEKKACNSLLLKINQIGT 352
>3otr_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, alpha-beta barrel, TIM barrel;
2.75A {Toxoplasma gondii}
Length = 452
Score = 28.3 bits (64), Expect = 1.0
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ R+ K +K + N L +K+N IG+
Sbjct: 335 TNILRIEKALKDKACNCLLLKVNQIGS 361
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural
GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Length = 427
Score = 28.2 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ +RL K I+++ N L +K+N IGT
Sbjct: 319 TNVERLRKGIEMKAANALLLKVNQIGT 345
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity,
glycolysis, , isothermal titration calorimetry, lyase;
1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A
1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Length = 439
Score = 28.2 bits (64), Expect = 1.2
Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ KR+ + ++ + N L +K+N IG+
Sbjct: 322 TNPKRIERAVEEKACNCLLLKVNQIGS 348
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A
{Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB:
1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A
4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A*
2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Length = 436
Score = 28.2 bits (64), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ KR+ I+ + + L +K+N IGT
Sbjct: 325 TNPKRIATAIEKKAADALLLKVNQIGT 351
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 1.3
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 68 ESTLENATSMAEWVSW--LAFQMTLQPTRTVSTSLFESYLSSG 108
ES + + + + P ++ S+ E L +
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAY-PNTSLPPSILEDSLENN 331
Score = 27.7 bits (61), Expect = 1.9
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 18/85 (21%)
Query: 44 PLAMTNH-------DIK-NYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQ-----MTL 90
P+ +T H I+ NY I+ V T + + E + F+ ++
Sbjct: 1669 PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Query: 91 ----QPT-RTVSTSLFESYLSSGII 110
QP + + FE S G+I
Sbjct: 1729 TQFTQPALTLMEKAAFEDLKSKGLI 1753
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A
{Anaerostipes caccae}
Length = 449
Score = 27.9 bits (63), Expect = 1.5
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ +RL K IK + N + IK+N IGT
Sbjct: 343 TNTERLNKGIKERCGNSILIKLNQIGT 369
>3qn3_A Enolase; structural genomics, center for structural genomics of
infec diseases, csgid, glycolysis, lyase; 2.13A
{Campylobacter jejuni}
Length = 417
Score = 27.8 bits (63), Expect = 1.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ L + I + N + IK N IGT
Sbjct: 315 TNEDILREGIIKKMANAVLIKPNQIGT 341
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli}
SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Length = 431
Score = 27.9 bits (63), Expect = 1.7
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ K L + I+ N + IK N IG+
Sbjct: 321 TNTKILKEGIEKGIANSILIKFNQIGS 347
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Length = 428
Score = 27.9 bits (63), Expect = 1.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ L K IK N + +K+N IGT
Sbjct: 317 TNPDILEKGIKKNIANAILVKLNQIGT 343
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting
protein, glycolysis, phosphopyruvate hydratase, lyase;
HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP:
c.1.11.1 d.54.1.1 PDB: 1iyx_A
Length = 444
Score = 27.5 bits (62), Expect = 2.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 111 TSAKRLMKCIKLQ--NGLFIKINPIGT 135
T+ L + I+ N + IK+N IGT
Sbjct: 333 TNTDYLARGIQEGAANSILIKVNQIGT 359
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel,
schiff base, hydroxyproline metabolis; HET: KPI; 1.97A
{Homo sapiens} PDB: 3s5n_A
Length = 307
Score = 27.3 bits (61), Expect = 2.4
Identities = 5/38 (13%), Positives = 11/38 (28%)
Query: 99 SLFESYLSSGIITSAKRLMKCIKLQNGLFIKINPIGTK 136
L + + K + I+ + + G K
Sbjct: 232 QLERLCCTGQWEDAQKLQHRLIEPNAAVTRRFGIPGLK 269
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target
9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16}
Length = 316
Score = 27.2 bits (61), Expect = 2.6
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 115 RLMKCIKLQNGLFIKINPIGTK 136
++ L+ N + K
Sbjct: 244 DIVPFEDLRGKYNQGNNVVVIK 265
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM
barrel, NYSGXRC, PSI-2, structural genomics; 1.90A
{Oceanobacillus iheyensis HTE831}
Length = 314
Score = 26.8 bits (60), Expect = 3.2
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 115 RLMKCIKLQNGLFIKINPIGTK 136
++ L+ N + K
Sbjct: 244 DVVPFEDLRAKHNNGNNVVIIK 265
>2c46_A MRNA capping enzyme; phosphatase, transferase, hydrolase, mRNA
processing, multifunctional enzyme,
nucleotidyltransferase; 1.6A {Homo sapiens} PDB: 1i9s_A
1i9t_A
Length = 241
Score = 26.6 bits (58), Expect = 3.3
Identities = 8/72 (11%), Positives = 22/72 (30%), Gaps = 5/72 (6%)
Query: 1 MSSRWYPIYQKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIY 60
+ +Y + +I P W+ R +P+ + L + + +
Sbjct: 11 VDLGTENLYFQSMAHNKI--PPRWLNCPRRGQPVAGRFLPLKTML---GPRYDSQVAEEN 65
Query: 61 NVTVKHVESTLE 72
+ + L+
Sbjct: 66 RFHPSMLSNYLK 77
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis;
1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Length = 176
Score = 26.5 bits (58), Expect = 3.4
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 47 MTNHDIKNYLEKIYNVTVK--HVESTLENATSMAEW 80
+ ++ ++K NV + +ES + AT+ W
Sbjct: 13 LNMWKVRELVDKATNVVMNYSEIESKVREATNDDPW 48
>1cjx_A 4-hydroxyphenylpyruvate dioxygenase; oxidoreductase, iron; 2.40A
{Pseudomonas fluorescens} SCOP: d.32.1.3 d.32.1.3
Length = 357
Score = 26.6 bits (58), Expect = 4.0
Identities = 4/38 (10%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 66 HVESTLENATSMAEWVSWLAFQMTLQPTRTVSTSLFES 103
+E ++ + F R+ + L+
Sbjct: 15 FIEFASPTPGTLEPIFEIMGFTKVAT-HRSKNVHLYRQ 51
>2i9i_A Hypothetical protein; PSI-2 structural genomics, protein
structure initiative, NEW research center for
structural genomics, nysgxrc; 1.80A {Helicobacter
pylori} SCOP: c.51.6.1
Length = 254
Score = 25.9 bits (56), Expect = 5.8
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 22 NFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLEN 73
+F + + P +VV P + ++K Y++K + + +++ E
Sbjct: 32 DFNYPIHIVQAPQNHHVVGILTPRIQVSDNLKPYIDKFQDALINQIQTIFEK 83
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI
biosynthesis, diaminopimelate biosynthesis, lyase,
schiff B; 1.45A {Staphylococcus aureus} PDB: 3di1_A
3di0_A
Length = 292
Score = 25.5 bits (57), Expect = 7.9
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 111 TSAKRLMKCIKLQNGLFIKINPIGTK 136
+ L + L + INPI K
Sbjct: 228 DIQDQFKPIGTLLSALSVDINPIPIK 253
>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET:
GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*
Length = 201
Score = 25.2 bits (56), Expect = 8.1
Identities = 4/16 (25%), Positives = 4/16 (25%)
Query: 78 AEWVSWLAFQMTLQPT 93
A L F L
Sbjct: 92 ARLQEALGFCSDLHAA 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,322,830
Number of extensions: 121212
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 334
Number of HSP's successfully gapped: 38
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.4 bits)