RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5391
(157 letters)
>d2qamt1 d.12.1.1 (T:1-93) Ribosomal protein L23 {Escherichia coli
[TaxId: 562]}
Length = 93
Score = 34.7 bits (80), Expect = 7e-04
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N + V T +IK ++K++ V V+ V
Sbjct: 28 NTIVLKVAKDATKAEIKAAVQKLFEVEVEVV 58
>d2zjrq1 d.12.1.1 (Q:2-94) Ribosomal protein L23 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 93
Score = 34.7 bits (80), Expect = 7e-04
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
V F V T +IK+ +++ + V V +
Sbjct: 22 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGI 52
>d2j01x1 d.12.1.1 (X:3-95) Ribosomal protein L23 {Thermus
thermophilus [TaxId: 274]}
Length = 93
Score = 33.9 bits (78), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVES 69
F V T +IKN +E + V V V +
Sbjct: 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNT 54
>d1vqos1 d.12.1.1 (S:1-81) Ribosomal protein L23 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 81
Score = 32.4 bits (74), Expect = 0.004
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
N ++F V + ++ + +E+ Y+VTV+ V
Sbjct: 22 NKLQFAVDDRASKGEVADAVEEQYDVTVEQV 52
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 194
Score = 28.5 bits (63), Expect = 0.26
Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 20 LPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVESTLE 72
+P W+ R +P+ + L + + + + + L+
Sbjct: 2 IPPRWLNCPRRGQPVAGRFLPLKTML---GPRYDSQVAEENRFHPSMLSNYLK 51
>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma
brucei [TaxId: 5691]}
Length = 312
Score = 26.1 bits (56), Expect = 2.1
Identities = 11/84 (13%), Positives = 21/84 (25%)
Query: 10 QKGNPQLRIFLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHVES 69
+ GNP+ R F L + + +L + VE
Sbjct: 50 RTGNPEPRYFGLPLGSINSMGLPNLGVDFYLSYAAQTHDYSRKPLFLSMSGLSVEESVEM 109
Query: 70 TLENATSMAEWVSWLAFQMTLQPT 93
+ E + L ++
Sbjct: 110 VKKLVPITKEKGTILELNLSCPNV 133
>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld
{Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 24.4 bits (53), Expect = 3.2
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 114 KRLMKCIKLQNGLFIKINPI 133
+L +++ + + IN I
Sbjct: 63 VQLCSFACVESTILLHINDI 82
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli
[TaxId: 562]}
Length = 160
Score = 24.8 bits (54), Expect = 4.9
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 30 SKEPLPPNVVEF--HVPLAMTNHDIKNYLEKIYNVTVKHVESTLEN-ATSMAEWV--SWL 84
+K LP V+ + +T I N ++ ++ V++ + A ++ V S L
Sbjct: 69 AKAQLPDEVISYINDPRNDITISGIDNINAQLGAGDLQTVKAAISAKANNLTTTVNNSQL 128
Query: 85 AFQMTLQPTRTVSTSLFESYLS 106
Q T + TS S
Sbjct: 129 EIQQMSN-TLNLLTSARSDMQS 149
>d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit,
C-domain {Desulfovibrio desulfuricans [TaxId: 876]}
Length = 312
Score = 24.9 bits (54), Expect = 5.6
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 24 WMKLVRSKEP-LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
W K + P L P+ P+ M K Y + K V
Sbjct: 96 WQKYAETYYPELLPHFSTCKSPIGMNGALAKTYGAERMKYDPKQV 140
>d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain
{Clostridium pasteurianum [TaxId: 1501]}
Length = 365
Score = 24.6 bits (53), Expect = 6.2
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 24 WMKLVRSKEP-LPPNVVEFHVPLAMTNHDIKNYLEKIYNVTVKHV 67
W++ + P L N+ P + K Y I + K+V
Sbjct: 94 WVRQAENYYPELLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNV 138
>d1s1pa_ c.1.7.1 (A:) Prostaglandin d2 11-ketoreductase (akr1c3)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 315
Score = 24.5 bits (52), Expect = 6.8
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 16/43 (37%)
Query: 119 CIKLQNGLFIKINPIGTKDLLVLGVWG--------ALSLVKTA 153
C+KL +G + +G G + AL + K A
Sbjct: 2 CVKLNDGH--FMPVLG------FGTYAPPEVPRSKALEVTKLA 36
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 24.7 bits (53), Expect = 6.8
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 36 PNVVEFHVPLAMTNHDIKNYLEKIYNV 62
P V+ F PL + D++ +E + V
Sbjct: 359 PTVIRFLPPLVIEKEDLERVVEAVRAV 385
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase
{Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Length = 377
Score = 24.3 bits (51), Expect = 7.9
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 19 FLPNFWMKLVRSKEPLPPNVVEFHVPLAMTNHDIKNYLEKIYNVTV 64
L + + L KE P + +P + + L +N+ V
Sbjct: 294 RLEDIGLSLHVEKEYRLPTLTTVCIPDGVDGKAVARRLLNEHNIEV 339
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 24.5 bits (52), Expect = 8.4
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 48 TNHDIKNYLEKIYNVTVKHVESTLENATSMAEWVSWLAFQM 88
TNHD+ ++E I ++ + TS + + +
Sbjct: 65 TNHDVVAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLAL 105
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 24.0 bits (51), Expect = 9.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 37 NVVEFHVPLAMTNHDIKNYLEKIYNV 62
NV+ VPL + + I+ LE I
Sbjct: 394 NVLRILVPLTIEDAQIRQGLEIISQC 419
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.408
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 577,675
Number of extensions: 24335
Number of successful extensions: 85
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 18
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.0 bits)