BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5392
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OKW|A Chain A, Mouse Semaphorin 6a, Extracellular Domains 1-2
pdb|3OKW|B Chain B, Mouse Semaphorin 6a, Extracellular Domains 1-2
pdb|3OKY|B Chain B, Plexin A2 In Complex With Semaphorin 6a
Length = 565
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS L P FV ++ GD++YFFFRE AVE+ GK V+
Sbjct: 178 IDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFP 237
Query: 56 RVARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100
RVA+VCK D GG R +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 238 RVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQA 283
>pdb|3AFC|A Chain A, Mouse Semaphorin 6a Extracellular Domain
pdb|3AFC|B Chain B, Mouse Semaphorin 6a Extracellular Domain
pdb|3AL8|A Chain A, Plexin A2 SEMAPHORIN 6A COMPLEX
Length = 556
Score = 108 bits (269), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS L P FV ++ GD++YFFFRE AVE+ GK V+
Sbjct: 179 IDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFP 238
Query: 56 RVARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100
RVA+VCK D GG R +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 239 RVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQA 284
>pdb|1Q47|A Chain A, Structure Of The Semaphorin 3a Receptor-Binding Module
pdb|1Q47|B Chain B, Structure Of The Semaphorin 3a Receptor-Binding Module
Length = 495
Score = 93.2 bits (230), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D VYFFFRE A++ + GKA ++R+
Sbjct: 182 HHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIG 241
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 242 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 284
>pdb|4GZ8|A Chain A, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
pdb|4GZ8|B Chain B, Mouse Semaphorin 3a, Domains Sema-Psi-Ig
Length = 667
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D VYFFFRE A++ + GKA ++R+
Sbjct: 190 HHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIG 249
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 250 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 292
>pdb|4GZA|G Chain G, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 538
Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D VYFFFRE A++ + GKA ++R+
Sbjct: 190 HHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIG 249
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 250 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 292
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 15/101 (14%)
Query: 2 DPIIYR----EPLQTEQYDSMSLNAPNFV----------SSLTQGDFVYFFFRETAVEFI 47
+PII R PL+TE Y LN P+FV S + D VYFFF E +VE+
Sbjct: 164 EPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYE 222
Query: 48 NCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVP 88
+ + R+ARVCK D+GG + +WTSFLK+RL CS P
Sbjct: 223 FVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRP 263
>pdb|3NVQ|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVQ|E Chain E, Molecular Mechanism Of Guidance Cue Recognition
Length = 590
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 33 DFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFR-NRWTSFLKSRLNCS 86
D +Y+FFRE + SRVA++C+ D+GG ++W +FLK+ L CS
Sbjct: 194 DKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESSLSVSKWNTFLKAMLVCS 248
>pdb|3NVN|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
Length = 389
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 25 FVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRN-RWTSFLKSRL 83
FV D VY F +T ++ K Y +A++C D GGP + RW++FLK L
Sbjct: 149 FVDKDGTYDKVYILFTDT-IDTKRIVKIPY--IAQMCLNDEGGPSSLSSHRWSTFLKVEL 205
Query: 84 NCSVPG 89
C + G
Sbjct: 206 ECDIDG 211
>pdb|3NVX|A Chain A, Molecular Mechanism Of Guidance Cue Recognition
pdb|3NVX|B Chain B, Molecular Mechanism Of Guidance Cue Recognition
Length = 383
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 25 FVSSLTQGDFVYFFFRETAVEFINCGKAV-YSRVARVCKYDRGGPHRFRN-RWTSFLKSR 82
FV D VY F +T I + V +A++C D GGP + RW++FLK
Sbjct: 149 FVDKDGTYDKVYILFTDT----IGSKRIVKIPYIAQMCLNDEGGPSSLSSHRWSTFLKVE 204
Query: 83 LNCSVPG 89
L C + G
Sbjct: 205 LECDIDG 211
>pdb|1PFX|C Chain C, Porcine Factor Ixa
pdb|1X7A|C Chain C, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 235
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLN----CSVPGDFPFY 94
C+ D GGPH TSFL ++ C+V G + Y
Sbjct: 181 CQGDSGGPHVTEVEGTSFLTGIISWGEECAVKGKYGIY 218
>pdb|1CNV|A Chain A, Crystal Structure Of Concanavalin B At 1.65 A Resolution
Length = 299
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 59 RVCKYDRGGPHRFRNRWTSFLKS 81
R C+Y G R RN W S+ KS
Sbjct: 192 RSCQYSTGNIQRIRNAWLSWTKS 214
>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited
Length = 235
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLN----CSVPGDFPFY 94
C+ D GGPH TSFL ++ C++ G + Y
Sbjct: 181 CQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIY 218
>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant
Length = 235
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLN----CSVPGDFPFY 94
C+ D GGPH TSFL ++ C++ G + Y
Sbjct: 181 CQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIY 218
>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant
pdb|2WPJ|S Chain S, Factor Ixa Superactive Triple Mutant, Nacl-Soaked
pdb|2WPK|S Chain S, Factor Ixa Superactive Triple Mutant, Ethylene
Glycol-Soaked
pdb|2WPL|S Chain S, Factor Ixa Superactive Triple Mutant, Edta-Soaked
Length = 235
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLN----CSVPGDFPFY 94
C+ D GGPH TSFL ++ C++ G + Y
Sbjct: 181 CQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIY 218
>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino
Benzamidine
pdb|3LC3|A Chain A, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC3|C Chain C, Benzothiophene Inhibitors Of Factor Ixa
pdb|3LC5|A Chain A, Selective Benzothiophine Inhibitors Of Factor Ixa
Length = 235
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLN----CSVPGDFPFY 94
C+ D GGPH TSFL ++ C++ G + Y
Sbjct: 181 CQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIY 218
>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation
Factor Viia With Human Recombinant Soluble Tissue Factor
pdb|1QFK|H Chain H, Structure Of Human Factor Viia And Its Implications For
The Triggering Of Blood Coagulation
pdb|1CVW|H Chain H, Crystal Structure Of Active Site-inhibited Human
Coagulation Factor Viia (des-gla)
pdb|1FAK|H Chain H, Human Tissue Factor Complexed With Coagulation Factor Viia
Inhibited With A Bpti-Mutant
pdb|1DVA|H Chain H, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1DVA|I Chain I, Crystal Structure Of The Complex Between The Peptide
Exosite Inhibitor E-76 And Coagulation Factor Viia
pdb|1JBU|H Chain H, Coagulation Factor Vii Zymogen (Egf2PROTEASE) IN COMPLEX
WITH Inhibitory Exosite Peptide A-183
pdb|1KLI|H Chain H, Cofactor-And Substrate-Assisted Activation Of Factor Viia
pdb|1KLJ|H Chain H, Crystal Structure Of Uninhibited Factor Viia
pdb|1J9C|H Chain H, Crystal Structure Of Tissue Factor-Factor Viia Complex
pdb|1W0Y|H Chain H, Tf7a_3771 Complex
pdb|1YGC|H Chain H, Short Factor Viia With A Small Molecule Inhibitor
pdb|1Z6J|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
Viia/tissue Factor/pyrazinone Inhibitor
pdb|1W2K|H Chain H, Tf7a_4380 Complex
pdb|1WQV|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Propylsulfonamide-D- Thr-Met-P-Aminobenzamidine
pdb|1W7X|H Chain H, Factor7- 413 Complex
pdb|1W8B|H Chain H, Factor7 - 413 Complex
pdb|1WSS|H Chain H, Human Factor Viia-Tissue Factor In Complex With Peprid
Mimetic Inhibitor That Has Two Charge Groups In P2 And
P4
pdb|1WTG|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Biphenylalanine-Gln-P-
Aminobenzamidine
pdb|1WUN|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-Trp-Gln-P-Aminobenzamidine
pdb|1WV7|H Chain H, Human Factor Viia-tissue Factor Complexed With
Ethylsulfonamide-d-5-propoxy-trp-gln-p-aminobenzamidine
pdb|2B7D|H Chain H, Factor Viia Inhibitors: Chemical Optimization, Preclinical
Pharmacokinetics, Pharmacodynamics, And Efficacy In A
Baboon Thrombosis Model
pdb|2F9B|H Chain H, Discovery Of Novel Heterocyclic Factor Viia Inhibitors
pdb|2FLB|H Chain H, Discovery Of A Novel Hydroxy Pyrazole Based Factor Ixa
Inhibitor
pdb|2A2Q|H Chain H, Complex Of Active-Site Inhibited Human Coagulation Factor
Viia With Human Soluble Tissue Factor In The Presence Of
Ca2+, Mg2+, Na+, And Zn2+
pdb|2AER|H Chain H, Crystal Structure Of Benzamidine-Factor ViiaSOLUBLE TISSUE
Factor Complex.
pdb|2AEI|H Chain H, Crystal Structure Of A Ternary Complex Of Factor
ViiaTISSUE FACTOR And
2-[[6-[3-(Aminoiminomethyl)phenoxy]-3,
5-Difluro-4-[(1-Methyl-3-
Phenylpropyl)amino]-2-Pyridinyl]oxy]-Benzoic Acid
pdb|2FIR|H Chain H, Crystal Structure Of Dfpr-ViiaSTF
pdb|2C4F|H Chain H, Crystal Structure Of Factor Vii.Stf Complexed With
Pd0297121
pdb|2FLR|H Chain H, Novel 5-azaindole Factor Viia Inhibitors
pdb|2B8O|H Chain H, Crystal Structure Of Glu-gly-arg-chloromethyl
Ketone-factor Viia/soluble Tissue Factor Complex
pdb|2PUQ|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia In Complex With Soluble Tissue Factor
pdb|2EC9|H Chain H, Crystal Structure Analysis Of Human Factor Viia , Souluble
Tissue Factor Complexed With Bcx-3607
pdb|2ZP0|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Benzylsulfonamide-D- Ile-Gln-P-Aminobenzamidine
pdb|2ZWL|H Chain H, Human Factor Viia-Tissue Factor Complexed With Highly
Selective Peptide Inhibitor
pdb|2ZZU|H Chain H, Human Factor Viia-Tissue Factor Complexed With
Ethylsulfonamide-D-5-
(3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
pdb|3TH2|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH3|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|3TH4|H Chain H, Mg2+ Is Required For Optimal Folding Of The
Gamma-Carboxyglutamic Acid (Gla) Domains Of Vitamin
K-Dependent Clotting Factors At Physiological Ca2+
pdb|1O5D|H Chain H, Dissecting And Designing Inhibitor Selectivity
Determinants At The S1 Site Using An Artificial Ala190
Protease (Ala190 Upa)
pdb|2BZ6|H Chain H, Orally Available Factor7a Inhibitor
pdb|4ISI|H Chain H, Structure Of Factor Viia In Complex With The Inhibitor
(6s)-n-(4-
Carbamimidoylbenzyl)-1-chloro-3-(cyclobutylamino)-8,
8-diethyl-4-oxo-
4,6,7,8-tetrahydropyrrolo[1,2-a]pyrazine-6-carboxamide
Length = 254
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPH--RFRNRW--TSFLKSRLNCSVPGDFPFY 94
CK D GGPH +R W T + C+ G F Y
Sbjct: 188 CKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVY 225
>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa-
Pentasaccharide Complex
Length = 235
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLN----CSVPGDFPFY 94
C+ D GGPH TSFL ++ C++ G + Y
Sbjct: 181 CQGDAGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIY 218
>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation
Factor Viia Mutant In Complex With Soluble Tissue Factor
Length = 254
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 61 CKYDRGGPH--RFRNRW--TSFLKSRLNCSVPGDFPFY 94
CK D GGPH +R W T + C+ G F Y
Sbjct: 188 CKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVY 225
>pdb|2LBO|A Chain A, Eimeria Tenella Microneme Protein 3 Mar_b Domain
Length = 123
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 45 EFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGD 90
E N G A Y A +YD+G + W +++ L+ S GD
Sbjct: 18 ESCNSGLASYCGAAIYARYDKGNSSQQTKEWRCYIEKELDFSKSGD 63
>pdb|1NBM|D Chain D, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
pdb|1NBM|F Chain F, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFV 26
+PI R P++T+Q+ ++ AP FV
Sbjct: 104 EPIDERGPIKTKQFAAIHAEAPEFV 128
>pdb|2W6E|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6E|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
1.
pdb|2W6F|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6F|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
2.
pdb|2W6I|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6I|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4b.
pdb|2W6J|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6J|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
5.
pdb|2W6G|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6G|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
3.
pdb|2W6H|D Chain D, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|E Chain E, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a.
pdb|2W6H|F Chain F, Low Resolution Structures Of Bovine Mitochondrial
F1-Atpase During Controlled Dehydration: Hydration State
4a
Length = 528
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFV 26
+PI R P++T+Q+ ++ AP FV
Sbjct: 150 EPIDERGPIKTKQFAAIHAEAPEFV 174
>pdb|1NBM|E Chain E, The Structure Of Bovine F1-Atpase Covalently Inhibited
With 4-Chloro-7-Nitrobenzofurazan
Length = 480
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFV 26
+PI R P++T+Q+ ++ AP FV
Sbjct: 104 EPIDERGPIKTKQFAAIHAEAPEFV 128
>pdb|1COW|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1COW|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B
pdb|1EFR|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1EFR|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The Peptide
Antibiotic Efrapeptin
pdb|1BMF|D Chain D, Bovine Mitochondrial F1-Atpase
pdb|1BMF|E Chain E, Bovine Mitochondrial F1-Atpase
pdb|1BMF|F Chain F, Bovine Mitochondrial F1-Atpase
pdb|1QO1|D Chain D, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|E Chain E, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1QO1|F Chain F, Molecular Architecture Of The Rotary Motor In Atp Synthase
From Yeast Mitochondria
pdb|1E1Q|D Chain D, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|E Chain E, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1Q|F Chain F, Bovine Mitochondrial F1-Atpase At 100k
pdb|1E1R|D Chain D, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|E Chain E, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E1R|F Chain F, Bovine Mitochondrial F1-Atpase Inhibited By Mg2+adp And
Aluminium Fluoride
pdb|1E79|E Chain E, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1E79|F Chain F, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
pdb|1H8H|D Chain D, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|E Chain E, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8H|F Chain F, Bovine Mitochondrial F1-Atpase Crystallised In The
Presence Of 5mm Amppnp
pdb|1H8E|D Chain D, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|E Chain E, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1H8E|F Chain F, (Adp.Alf4)2(Adp.So4) Bovine F1-Atpase (All Three Catalytic
Sites Occupied)
pdb|1OHH|D Chain D, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|E Chain E, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1OHH|F Chain F, Bovine Mitochondrial F1-Atpase Complexed With The
Inhibitor Protein If1
pdb|1W0J|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0J|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|D Chain D, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|E Chain E, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|1W0K|F Chain F, Beryllium Fluoride Inhibited Bovine F1-Atpase
pdb|2CK3|D Chain D, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|E Chain E, Azide Inhibited Bovine F1-Atpase
pdb|2CK3|F Chain F, Azide Inhibited Bovine F1-Atpase
pdb|2JDI|D Chain D, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|E Chain E, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JDI|F Chain F, Ground State Structure Of F1-Atpase From Bovine Heart
Mitochondria (Bovine F1-Atpase Crystallised In The
Absence Of Azide)
pdb|2JIZ|D Chain D, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|E Chain E, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|F Chain F, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|K Chain K, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|L Chain L, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JIZ|M Chain M, The Structure Of F1-Atpase Inhibited By Resveratrol.
pdb|2JJ1|D Chain D, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|E Chain E, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|F Chain F, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|K Chain K, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|L Chain L, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ1|M Chain M, The Structure Of F1-Atpase Inhibited By Piceatannol.
pdb|2JJ2|D Chain D, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|E Chain E, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|F Chain F, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|K Chain K, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|L Chain L, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2JJ2|M Chain M, The Structure Of F1-atpase Inhibited By Quercetin.
pdb|2V7Q|D Chain D, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|E Chain E, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2V7Q|F Chain F, The Structure Of F1-Atpase Inhibited By I1-60his, A
Monomeric Form Of The Inhibitor Protein, If1.
pdb|2WSS|D Chain D, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|E Chain E, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|F Chain F, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|M Chain M, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|N Chain N, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|2WSS|O Chain O, The Structure Of The Membrane Extrinsic Region Of Bovine
Atp Synthase
pdb|1E79|D Chain D, Bovine F1-Atpase Inhibited By Dccd
(Dicyclohexylcarbodiimide)
Length = 482
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFV 26
+PI R P++T+Q+ ++ AP FV
Sbjct: 104 EPIDERGPIKTKQFAAIHAEAPEFV 128
>pdb|4ASU|D Chain D, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|E Chain E, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
pdb|4ASU|F Chain F, F1-Atpase In Which All Three Catalytic Sites Contain Bound
Nucleotide, With Magnesium Ion Released In The Empty
Site
Length = 480
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFV 26
+PI R P++T+Q+ ++ AP FV
Sbjct: 102 EPIDERGPIKTKQFAAIHAEAPEFV 126
>pdb|2XND|D Chain D, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|E Chain E, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
pdb|2XND|F Chain F, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp
Synthase
Length = 467
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFV 26
+PI R P++T+Q+ ++ AP FV
Sbjct: 92 EPIDERGPIKTKQFAAIHAEAPEFV 116
>pdb|1WCV|1 Chain 1, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEJ|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PIIYREPLQTEQYDSMSLNAPNFVSSLT 30
P RE L+ E YD + L+AP +S LT
Sbjct: 100 PTALREALRDEGYDLVLLDAPPSLSPLT 127
>pdb|2BEK|A Chain A, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|B Chain B, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|C Chain C, Structure Of The Bacterial Chromosome Segregation Protein
Soj
pdb|2BEK|D Chain D, Structure Of The Bacterial Chromosome Segregation Protein
Soj
Length = 257
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PIIYREPLQTEQYDSMSLNAPNFVSSLT 30
P RE L+ E YD + L+AP +S LT
Sbjct: 100 PTALREALRDEGYDLVLLDAPPSLSPLT 127
>pdb|2GSJ|A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of
Ppl2, A Novel Chimerolectin From Parkia Platycephala
Seeds Exhibiting Endochitinolytic Activity
Length = 271
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 61 CKYDRGGPHRFRNRWTSFLKS 81
C+++ G P FRN W + S
Sbjct: 187 CEFNSGNPSNFRNSWNKWTSS 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,164,192
Number of Sequences: 62578
Number of extensions: 109677
Number of successful extensions: 251
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 28
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)