BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5392
(100 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24322|SEM1A_DROME Semaphorin-1A OS=Drosophila melanogaster GN=Sema-1a PE=2 SV=2
Length = 850
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 90/98 (91%), Positives = 97/98 (98%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVC 61
DPIIYREPLQTEQYDS+SLNAPNFVSS TQGDFVYFFFRETAVEFINCGKA+YSRVARVC
Sbjct: 180 DPIIYREPLQTEQYDSLSLNAPNFVSSFTQGDFVYFFFRETAVEFINCGKAIYSRVARVC 239
Query: 62 KYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
K+D+GGPHRFRNRWTSFLKSRLNCS+PGD+PFYF+EIQ
Sbjct: 240 KWDKGGPHRFRNRWTSFLKSRLNCSIPGDYPFYFNEIQ 277
>sp|Q26473|SEM1A_SCHAM Semaphorin-1A OS=Schistocerca americana GN=SEMA-1A PE=1 SV=1
Length = 730
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 73/98 (74%), Positives = 89/98 (90%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVC 61
DP+IYR PL+TE+ D LNAPNFV+++ DF++FFFRETAVE+INCGKA+YSRVARVC
Sbjct: 185 DPLIYRGPLRTERSDLKQLNAPNFVNTMEYNDFIFFFFRETAVEYINCGKAIYSRVARVC 244
Query: 62 KYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
K+D+GGPH+F +RWTSFLKSRLNCSVPGD+PFYF+EIQ
Sbjct: 245 KHDKGGPHQFGDRWTSFLKSRLNCSVPGDYPFYFNEIQ 282
>sp|Q26972|SEM1A_TRICF Semaphorin-1A OS=Tribolium confusum GN=SEMA-1A PE=2 SV=1
Length = 712
Score = 167 bits (424), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/98 (70%), Positives = 87/98 (88%)
Query: 2 DPIIYREPLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVC 61
DP+IYREP +TE D LNAPNFV+S+ GD+++FF+RETAVE++NCGK +YSRVARVC
Sbjct: 183 DPLIYREPQRTELSDLKQLNAPNFVNSVAYGDYIFFFYRETAVEYMNCGKVIYSRVARVC 242
Query: 62 KYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
K D+GGPH+ R+RWTSFLK+RLNCS+PG++PFYFDEIQ
Sbjct: 243 KDDKGGPHQSRDRWTSFLKARLNCSIPGEYPFYFDEIQ 280
>sp|Q9XZC8|SEM2A_SCHGR Semaphorin-2A OS=Schistocerca gregaria GN=SEMA-2A PE=2 SV=1
Length = 697
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 58/89 (65%), Positives = 71/89 (79%)
Query: 11 QTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHR 70
+T +YDS L+ PNFV S G++V FFFRETAVE+INCGK+VYSRVARVCK D GG +
Sbjct: 210 RTLKYDSKWLDNPNFVGSFDVGEYVLFFFRETAVEYINCGKSVYSRVARVCKKDVGGKNI 269
Query: 71 FRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
W +FLK+RLNCS+PG+FPFYF+EIQ
Sbjct: 270 LSQNWATFLKARLNCSIPGEFPFYFNEIQ 298
>sp|Q24323|SEM2A_DROME Semaphorin-2A OS=Drosophila melanogaster GN=Sema-2a PE=1 SV=2
Length = 724
Score = 127 bits (320), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 72/89 (80%)
Query: 11 QTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHR 70
+T +YDS L+ PNFV S G++VYFFFRETAVE+INCGKAVYSR+ARVCK D GG +
Sbjct: 241 RTLKYDSKWLDKPNFVGSFDIGEYVYFFFRETAVEYINCGKAVYSRIARVCKKDVGGKNL 300
Query: 71 FRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
+ W ++LK+RLNCS+ G+FPFYF+EIQ
Sbjct: 301 LAHNWATYLKARLNCSISGEFPFYFNEIQ 329
>sp|Q13591|SEM5A_HUMAN Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3
Length = 1074
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 73/103 (70%), Gaps = 6/103 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
DP IYR PL+T QY+S LN PNFVSS G+F YFFFRE AVE +CGK V+SR
Sbjct: 191 DPAIYRSLGILPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH-DCGKTVFSR 249
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
ARVCK D GG + WT+F+K+RLNCS PG+ PFY++E+Q
Sbjct: 250 AARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQ 292
>sp|D3ZTD8|SEM5A_RAT Semaphorin-5A OS=Rattus norvegicus GN=Sema5a PE=1 SV=1
Length = 1074
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 73/103 (70%), Gaps = 6/103 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
DP IYR PL+T QY+S LN PNFVSS G+F YFFFRE AVE +CGK V+SR
Sbjct: 191 DPAIYRSLGTLPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH-DCGKTVFSR 249
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
ARVCK D GG + WT+F+K+RLNCS PG+ PFY++E+Q
Sbjct: 250 AARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQ 292
>sp|Q62217|SEM5A_MOUSE Semaphorin-5A OS=Mus musculus GN=Sema5a PE=2 SV=1
Length = 1077
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/103 (58%), Positives = 73/103 (70%), Gaps = 6/103 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
DP IYR PL+T QY+S LN PNFVSS G+F YFFFRE AVE +CGK V+SR
Sbjct: 191 DPAIYRSLGTLPPLRTAQYNSKWLNEPNFVSSYDIGNFTYFFFRENAVEH-DCGKTVFSR 249
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
ARVCK D GG + WT+F+K+RLNCS PG+ PFY++E+Q
Sbjct: 250 PARVCKNDIGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQ 292
>sp|Q60519|SEM5B_MOUSE Semaphorin-5B OS=Mus musculus GN=Sema5b PE=2 SV=2
Length = 1093
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 6/103 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
DP IYR PL+T QY+S LN PNFV++ G F YFF RE AVE +CG+ VYSR
Sbjct: 201 DPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAFDIGLFAYFFLRENAVEH-DCGRTVYSR 259
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
VARVCK D GG + WT+F+K+RLNCS PG+ PFY++E+Q
Sbjct: 260 VARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQ 302
>sp|Q9P283|SEM5B_HUMAN Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4
Length = 1151
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 72/103 (69%), Gaps = 6/103 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
DP IYR PL+T QY+S LN PNFV++ G F YFF RE AVE +CG+ VYSR
Sbjct: 259 DPAIYRSLGSGPPLRTAQYNSKWLNEPNFVAAYDIGLFAYFFLRENAVEH-DCGRTVYSR 317
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
VARVCK D GG + WT+F+K+RLNCS PG+ PFY++E+Q
Sbjct: 318 VARVCKNDVGGRFLLEDTWTTFMKARLNCSRPGEVPFYYNELQ 360
>sp|Q9H3T2|SEM6C_HUMAN Semaphorin-6C OS=Homo sapiens GN=SEMA6C PE=2 SV=4
Length = 930
Score = 115 bits (289), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 6/104 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
D ++YR PL++ +YDS L P+FV +L GD VYFFFRE +VE G+ +SR
Sbjct: 198 DAVVYRSLGPQPPLRSAKYDSKWLREPHFVQALEHGDHVYFFFREVSVEDARLGRVQFSR 257
Query: 57 VARVCKYDRGGPHRFRNR-WTSFLKSRLNCSVPGDFPFYFDEIQ 99
VARVCK D GG R +R WTSFLK RLNCSVPGD FYFD +Q
Sbjct: 258 VARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQ 301
>sp|Q5R7F5|SEM6D_PONAB Semaphorin-6D OS=Pongo abelii GN=SEMA6D PE=2 SV=1
Length = 1017
Score = 115 bits (288), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 6/104 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
D +IYR L+T +YDS + P+F+ ++ G++VYFFFRE AVE N GKAVYSR
Sbjct: 195 DAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSR 254
Query: 57 VARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
VAR+CK D GG R WTSFLK+RLNCSVPGD FYFD +Q
Sbjct: 255 VARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQ 298
>sp|Q8NFY4|SEM6D_HUMAN Semaphorin-6D OS=Homo sapiens GN=SEMA6D PE=2 SV=1
Length = 1073
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 6/104 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
D +IYR L+T +YDS + P+F+ ++ G++VYFFFRE AVE N GKAVYSR
Sbjct: 195 DAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSR 254
Query: 57 VARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
VAR+CK D GG R WTSFLK+RLNCSVPGD FYFD +Q
Sbjct: 255 VARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQ 298
>sp|Q76KF0|SEM6D_MOUSE Semaphorin-6D OS=Mus musculus GN=Sema6d PE=2 SV=1
Length = 1073
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/104 (56%), Positives = 72/104 (69%), Gaps = 6/104 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
D +IYR L+T +YDS + P+F+ ++ G++VYFFFRE AVE N GKAVYSR
Sbjct: 195 DAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSR 254
Query: 57 VARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
VAR+CK D GG R WTSFLK+RLNCSVPGD FYFD +Q
Sbjct: 255 VARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQ 298
>sp|Q9WTL3|SEM6C_RAT Semaphorin-6C OS=Rattus norvegicus GN=Sema6c PE=2 SV=1
Length = 960
Score = 114 bits (286), Expect = 1e-25, Method: Composition-based stats.
Identities = 58/104 (55%), Positives = 70/104 (67%), Gaps = 6/104 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
D ++YR PL++ +YDS L P+FV +L GD VYFFFRE +VE G+ +SR
Sbjct: 197 DAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGDHVYFFFREVSVEDARLGRVQFSR 256
Query: 57 VARVCKYDRGGPHRFRNR-WTSFLKSRLNCSVPGDFPFYFDEIQ 99
VARVCK D GG R +R WTSFLK RLNCSVPGD FYFD +Q
Sbjct: 257 VARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQ 300
>sp|Q9WTM3|SEM6C_MOUSE Semaphorin-6C OS=Mus musculus GN=Sema6c PE=2 SV=1
Length = 931
Score = 112 bits (280), Expect = 6e-25, Method: Composition-based stats.
Identities = 57/104 (54%), Positives = 70/104 (67%), Gaps = 6/104 (5%)
Query: 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
D ++YR PL++ +YDS L P+FV +L G+ VYFFFRE +VE G+ +SR
Sbjct: 199 DAVVYRSLGPQPPLRSAKYDSKWLREPHFVYALEHGEHVYFFFREVSVEDARLGRVQFSR 258
Query: 57 VARVCKYDRGGPHRFRNR-WTSFLKSRLNCSVPGDFPFYFDEIQ 99
VARVCK D GG R +R WTSFLK RLNCSVPGD FYFD +Q
Sbjct: 259 VARVCKRDMGGSPRALDRHWTSFLKLRLNCSVPGDSTFYFDVLQ 302
>sp|Q9H2E6|SEM6A_HUMAN Semaphorin-6A OS=Homo sapiens GN=SEMA6A PE=1 SV=2
Length = 1030
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS L P FV ++ GD++YFFFRE AVE+ GK V+
Sbjct: 193 IDAVIYRSLGESPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFP 252
Query: 56 RVARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100
RVA+VCK D GG R +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 253 RVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQA 298
>sp|O35464|SEM6A_MOUSE Semaphorin-6A OS=Mus musculus GN=Sema6a PE=1 SV=2
Length = 1031
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS L P FV ++ GD++YFFFRE AVE+ GK V+
Sbjct: 193 IDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFP 252
Query: 56 RVARVCKYDRGGPHR-FRNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100
RVA+VCK D GG R +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 253 RVAQVCKNDMGGSQRVLEKQWTSFLKARLNCSVPGDSHFYFNILQA 298
>sp|O70141|SEM6B_RAT Semaphorin-6B OS=Rattus norvegicus GN=Sema6b PE=2 SV=1
Length = 887
Score = 103 bits (258), Expect = 2e-22, Method: Composition-based stats.
Identities = 55/105 (52%), Positives = 67/105 (63%), Gaps = 6/105 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS P FV ++ G VYFFFRE A+EF K V S
Sbjct: 203 IDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVS 262
Query: 56 RVARVCKYDRGG-PHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
RVARVCK D GG P +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 263 RVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQ 307
>sp|O54951|SEM6B_MOUSE Semaphorin-6B OS=Mus musculus GN=Sema6b PE=2 SV=1
Length = 886
Score = 103 bits (258), Expect = 3e-22, Method: Composition-based stats.
Identities = 55/105 (52%), Positives = 67/105 (63%), Gaps = 6/105 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS P FV ++ G VYFFFRE A+EF K V S
Sbjct: 203 IDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVS 262
Query: 56 RVARVCKYDRGG-PHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
RVARVCK D GG P +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 263 RVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQ 307
>sp|Q9H3T3|SEM6B_HUMAN Semaphorin-6B OS=Homo sapiens GN=SEMA6B PE=1 SV=4
Length = 888
Score = 103 bits (256), Expect = 4e-22, Method: Composition-based stats.
Identities = 55/105 (52%), Positives = 67/105 (63%), Gaps = 6/105 (5%)
Query: 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYS 55
+D +IYR L+T ++DS P FV ++ G VYFFFRE A+EF K V S
Sbjct: 202 IDAVIYRSLGDRPTLRTVKHDSKWFKEPYFVHAVEWGSHVYFFFREIAMEFNYLEKVVVS 261
Query: 56 RVARVCKYDRGG-PHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
RVARVCK D GG P +WTSFLK+RLNCSVPGD FYF+ +Q
Sbjct: 262 RVARVCKNDVGGSPRVLEKQWTSFLKARLNCSVPGDSHFYFNVLQ 306
>sp|Q17330|SEM1A_CAEEL Semaphorin-1A OS=Caenorhabditis elegans GN=smp-1 PE=2 SV=2
Length = 712
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 15/114 (13%)
Query: 2 DPIIYREPL------------QTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINC 49
D +IYR+ + +T+ YD+ LNAPNFV++ + VYF+FRE A E I+
Sbjct: 189 DALIYRKTIDETPSSKSAANIRTQSYDARVLNAPNFVATFAYKEHVYFWFREIASEAIDN 248
Query: 50 GKA--VYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVP-GDFPFYFDEIQV 100
+ +Y+RVARVCK D+GG RWTS+LK+RLNCS+P G PFYF+E++
Sbjct: 249 NEEPQIYARVARVCKNDKGGARPANERWTSYLKARLNCSLPSGSSPFYFNELKA 302
>sp|Q60PR7|SEM2A_CAEBR Semaphorin-2A OS=Caenorhabditis briggsae GN=mab-20 PE=3 SV=1
Length = 656
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/107 (48%), Positives = 63/107 (58%), Gaps = 11/107 (10%)
Query: 4 IIYREPL-----------QTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKA 52
+IYR PL +T D+ LN P FV S G V FFFRE A + +
Sbjct: 180 LIYRPPLTKNGKQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVLFFFREIAHDNSFGERI 239
Query: 53 VYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
++SRVARVCK D GG + R WTSF+K+RLNCSV +FPFYFD IQ
Sbjct: 240 IHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFPFYFDHIQ 286
>sp|Q95XP4|SEM2A_CAEEL Semaphorin-2A OS=Caenorhabditis elegans GN=mab-20 PE=1 SV=1
Length = 658
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 64/107 (59%), Gaps = 11/107 (10%)
Query: 4 IIYREPL-----------QTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKA 52
+IYR PL +T D+ LN P FV S G V+FFFRE A + +
Sbjct: 184 LIYRPPLTKNGKQLHASIRTIYSDNKWLNEPQFVGSFDVGQHVFFFFREIAHDNSFGERI 243
Query: 53 VYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
V+SRVARVCK D GG + R WTSF+K+RLNCSV +FPFYFD IQ
Sbjct: 244 VHSRVARVCKKDIGGRNVLRQVWTSFVKARLNCSVSANFPFYFDHIQ 290
>sp|Q14563|SEM3A_HUMAN Semaphorin-3A OS=Homo sapiens GN=SEMA3A PE=2 SV=1
Length = 771
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D VYFFFRE A++ + GKA ++R+
Sbjct: 207 HHHPIRTEQHDSRWLNDPKFISAHLISESDNPEDDKVYFFFRENAIDGEHSGKATHARIG 266
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 267 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 309
>sp|Q63548|SEM3A_RAT Semaphorin-3A OS=Rattus norvegicus GN=Sema3a PE=2 SV=1
Length = 772
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D VYFFFRE A++ + GKA ++R+
Sbjct: 207 HHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIG 266
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 267 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 309
>sp|O08665|SEM3A_MOUSE Semaphorin-3A OS=Mus musculus GN=Sema3a PE=1 SV=2
Length = 772
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D VYFFFRE A++ + GKA ++R+
Sbjct: 207 HHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIG 266
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 267 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 309
>sp|Q90607|SEM3A_CHICK Semaphorin-3A OS=Gallus gallus GN=SEMA3A PE=1 SV=1
Length = 772
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 6 YREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVA 58
+ P++TEQ+DS LN P F+S+ + D +YFFFRE A++ + GKA ++R+
Sbjct: 207 HHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKIYFFFRENAIDGEHTGKATHARIG 266
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
++CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 267 QICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 309
>sp|Q9W686|SE3AB_DANRE Semaphorin-3ab OS=Danio rerio GN=sema3ab PE=2 SV=1
Length = 778
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 7 REPLQTEQYDSMSLNAPNFVS-------SLTQGDFVYFFFRETAVEFINCGKAVYSRVAR 59
P++TEQ+DS LN P FVS + D +Y FFRE A++ KA ++R+ +
Sbjct: 209 HHPIRTEQHDSRWLNDPRFVSVHLIPESDNAEDDKIYLFFRENAIDGEQISKATHARIGQ 268
Query: 60 VCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
+CK D GG N+WT+FLK+RL CSVPG +FDE+Q
Sbjct: 269 LCKNDFGGHRSLVNKWTTFLKARLVCSVPGLNGIDTHFDELQ 310
>sp|Q9W7J1|SE3AA_DANRE Semaphorin-3aa OS=Danio rerio GN=sema3aa PE=2 SV=1
Length = 860
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 9/101 (8%)
Query: 8 EPLQTEQYDSMSLNAPNFV-------SSLTQGDFVYFFFRETAVEFINCGKAVYSRVARV 60
P++TEQ+DS LN P F+ S + D ++ FF+E A++ + GKA SR+ ++
Sbjct: 210 HPIRTEQHDSRWLNEPRFLGIHLIPESDNPEDDKIFLFFKENAMDGEHTGKATISRIGQL 269
Query: 61 CKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
CK D GG N+WT+FLK++L CSVPG +FDE+Q
Sbjct: 270 CKNDMGGHRSLVNKWTTFLKAKLTCSVPGLNGIDTHFDELQ 310
>sp|Q13214|SEM3B_HUMAN Semaphorin-3B OS=Homo sapiens GN=SEMA3B PE=2 SV=1
Length = 749
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 7 REPLQTEQYDSMSLNAPNFV-------SSLTQGDFVYFFFRETAVEFINC-GKAVYSRVA 58
R L+TE +DS LN P FV S D +YFFFRETAVE G+ SRV
Sbjct: 207 RPSLRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRETAVEAAPALGRLSVSRVG 266
Query: 59 RVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG-DFPFYFDEIQ 99
++C+ D GG N+WT+FLK+RL CSVPG + +FD++Q
Sbjct: 267 QICRNDVGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQ 308
>sp|Q62177|SEM3B_MOUSE Semaphorin-3B OS=Mus musculus GN=Sema3b PE=2 SV=2
Length = 748
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 45/99 (45%), Positives = 60/99 (60%), Gaps = 9/99 (9%)
Query: 10 LQTEQYDSMSLNAPNFV-------SSLTQGDFVYFFFRETAVEFINC-GKAVYSRVARVC 61
L+TE +DS LN P FV S D +YFFFRE+AVE G+ SRV ++C
Sbjct: 209 LRTEPHDSRWLNEPKFVKVFWIPESENPDDDKIYFFFRESAVEAAPAMGRMSVSRVGQIC 268
Query: 62 KYDRGGPHRFRNRWTSFLKSRLNCSVPG-DFPFYFDEIQ 99
+ D GG N+WT+FLK+RL CSVPG + +FD++Q
Sbjct: 269 RNDLGGQRSLVNKWTTFLKARLVCSVPGVEGDTHFDQLQ 307
>sp|Q9C0C4|SEM4C_HUMAN Semaphorin-4C OS=Homo sapiens GN=SEMA4C PE=2 SV=2
Length = 833
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 17/113 (15%)
Query: 2 DPIIYR-----EPLQTEQYDSMSLNAPNFVSSL----TQGDF------VYFFFRETAVEF 46
+PII R ++TE Y + LN P+FV S + G F VYFFFRE AVE
Sbjct: 188 EPIILRNMGPHHSMKTE-YLAFWLNEPHFVGSAYVPESVGSFTGDDDKVYFFFRERAVES 246
Query: 47 INCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
+ V +RVARVCK D GG + +WT+FLK+RL CS P ++ YF+++Q
Sbjct: 247 DCYAEQVVARVARVCKGDMGGARTLQRKWTTFLKARLACSAP-NWQLYFNQLQ 298
>sp|Q64151|SEM4C_MOUSE Semaphorin-4C OS=Mus musculus GN=Sema4c PE=1 SV=1
Length = 834
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 17/113 (15%)
Query: 2 DPIIYR-----EPLQTEQYDSMSLNAPNFVSSL----TQGDF------VYFFFRETAVEF 46
+P+I R ++TE Y + LN P+FV S + G F +YFFF E AVE+
Sbjct: 188 EPVILRYMGTHHSIKTE-YLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEY 246
Query: 47 INCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
+ V +RVARVCK D GG + +WT+FLK+RL CS P D+ YF++++
Sbjct: 247 DCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAP-DWKVYFNQLK 298
>sp|Q9YHX4|SEM4E_DANRE Semaphorin-4E OS=Danio rerio GN=sema4e PE=2 SV=1
Length = 766
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/100 (43%), Positives = 61/100 (61%), Gaps = 14/100 (14%)
Query: 2 DPIIYR---EPLQTEQYDSMSLNAPNFV--SSLTQG--------DFVYFFFRETAVEFIN 48
+P++ R E ++TE + S L+ PNF+ + + +G D +Y FF ETAVE+ +
Sbjct: 190 EPVMMRSTEESIRTE-FTSTWLSEPNFIHMAHIPEGQSNPDGDDDKIYLFFSETAVEYES 248
Query: 49 CGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVP 88
K SRVARVCK D GG + +WTSFLK+RL+C VP
Sbjct: 249 YTKVDVSRVARVCKGDLGGQRTLQKKWTSFLKARLDCQVP 288
>sp|O15041|SEM3E_HUMAN Semaphorin-3E OS=Homo sapiens GN=SEMA3E PE=2 SV=1
Length = 775
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 10 LQTEQYDSMSLNAPNFVSSLTQGD-------FVYFFFRETAVEFINCGKAVYSRVARVCK 62
++TE D L P FV S D VYFFF E A+E N A+Y+RV R+C
Sbjct: 212 IRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKVYFFFTEKALEAENNAHAIYTRVGRLCV 271
Query: 63 YDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
D GG N+W++FLK+RL CSVPG YFDE++
Sbjct: 272 NDVGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDELE 310
>sp|Q13275|SEM3F_HUMAN Semaphorin-3F OS=Homo sapiens GN=SEMA3F PE=2 SV=2
Length = 785
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 10/99 (10%)
Query: 10 LQTEQYDSMSLNAPNFV-------SSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCK 62
++T+QY+S LN P+F+ S+ D +YFFFRE + E AVY+R+ R+C
Sbjct: 243 MRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAPQ-SPAVYARIGRICL 301
Query: 63 YDRGGPHRFRNRWTSFLKSRLNCSVPGD--FPFYFDEIQ 99
D GG N+W++FLK+RL CSVPG+ +FDE+Q
Sbjct: 302 NDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQ 340
>sp|O88632|SEM3F_MOUSE Semaphorin-3F OS=Mus musculus GN=Sema3f PE=2 SV=2
Length = 785
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 10/99 (10%)
Query: 10 LQTEQYDSMSLNAPNFV-------SSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCK 62
++T+QY+S LN P+F+ S+ D +YFFFRE + E AVY+R+ R+C
Sbjct: 243 MRTDQYNSRWLNDPSFIHAELIPDSAERNDDKLYFFFRERSAEAPQ-NPAVYARIGRICL 301
Query: 63 YDRGGPHRFRNRWTSFLKSRLNCSVPGD--FPFYFDEIQ 99
D GG N+W++FLK+RL CSVPG+ +FDE+Q
Sbjct: 302 NDDGGHCCLVNKWSTFLKARLVCSVPGEDGIETHFDELQ 340
>sp|O95025|SEM3D_HUMAN Semaphorin-3D OS=Homo sapiens GN=SEMA3D PE=2 SV=2
Length = 777
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/69 (52%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 33 DFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGD-- 90
D +YFFFRE++ E K + SRV RVCK D GG N+WT+FLK+RL CS+PG
Sbjct: 258 DKIYFFFRESSQEGSTSDKTILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDG 317
Query: 91 FPFYFDEIQ 99
YFDE+Q
Sbjct: 318 ADTYFDELQ 326
>sp|Q9H3S1|SEM4A_HUMAN Semaphorin-4A OS=Homo sapiens GN=SEMA4A PE=1 SV=2
Length = 761
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/97 (41%), Positives = 58/97 (59%), Gaps = 5/97 (5%)
Query: 2 DPIIYR----EP-LQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
+PI+ R +P L+T+ + + +FV+++ VYFFF ETA EF + SR
Sbjct: 205 EPILMRTLGSQPVLKTDNFLRWLHHDASFVAAIPSTQVVYFFFEETASEFDFFERLHTSR 264
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPF 93
VARVCK D GG + +WT+FLK++L C+ PG PF
Sbjct: 265 VARVCKNDVGGEKLLQKKWTTFLKAQLLCTQPGQLPF 301
>sp|P70275|SEM3E_MOUSE Semaphorin-3E OS=Mus musculus GN=Sema3e PE=1 SV=3
Length = 775
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 10 LQTEQYDSMSLNAPNFVSSLTQGD-------FVYFFFRETAVEFINCGKAVYSRVARVCK 62
++TE D L P FV S D +YFFF E A+E N +Y+RV R+C
Sbjct: 212 IRTEHDDERLLKEPKFVGSYMIPDNEDRDDNKMYFFFTEKALEAENNAHTIYTRVGRLCV 271
Query: 63 YDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
D GG N+W++FLK+RL CSVPG YFDE++
Sbjct: 272 NDMGGQRILVNKWSTFLKARLVCSVPGMNGIDTYFDELE 310
>sp|Q8BH34|SEM3D_MOUSE Semaphorin-3D OS=Mus musculus GN=Sema3d PE=1 SV=1
Length = 777
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 33 DFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGD-- 90
D +YFFFRE++ E +++ SRV RVCK D GG N+WT+FLK+RL CS+PG
Sbjct: 258 DKIYFFFRESSQEGSTSDRSILSRVGRVCKNDVGGQRSLINKWTTFLKARLICSIPGSDG 317
Query: 91 FPFYFDEIQ 99
+FDE+Q
Sbjct: 318 ADTHFDELQ 326
>sp|Q9W6G6|SEM3D_DANRE Semaphorin-3D OS=Danio rerio GN=sema3d PE=2 SV=1
Length = 764
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 62/108 (57%), Gaps = 9/108 (8%)
Query: 1 MDPIIYREPLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAV 53
+ P +++ ++T+ + +N F+S+ D +YFFFRE + + K+V
Sbjct: 223 LGPPPHQQYIRTDISEDYWINEGKFISAHPISDTYNPDDDKIYFFFREASRDGSTTDKSV 282
Query: 54 YSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
SRVAR+C+ D GG N+WT+FLK+RL CS+PG +FDE+Q
Sbjct: 283 LSRVARICRNDVGGLRSLTNKWTTFLKARLVCSIPGPDGVDTHFDELQ 330
>sp|Q90663|SEM3D_CHICK Semaphorin-3D OS=Gallus gallus GN=SEMA3D PE=2 SV=1
Length = 761
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 33 DFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG--D 90
D +YFFFRE + + K + SRV RVCK D GG N+WT+FLK+RL CS+PG
Sbjct: 246 DKIYFFFREISQDSSTSDKTILSRVGRVCKNDMGGQRSLINKWTTFLKARLVCSIPGPEG 305
Query: 91 FPFYFDEIQ 99
+FDE+Q
Sbjct: 306 ADTHFDELQ 314
>sp|Q62178|SEM4A_MOUSE Semaphorin-4A OS=Mus musculus GN=Sema4a PE=1 SV=2
Length = 760
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 45/70 (64%)
Query: 24 NFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRL 83
+FV+++ VYFFF ETA EF + SRVA+VCK D GG + +WT+FLK++L
Sbjct: 232 SFVAAIPSTQVVYFFFEETASEFDFFEELYISRVAQVCKNDVGGEKLLQKKWTTFLKAQL 291
Query: 84 NCSVPGDFPF 93
C+ PG PF
Sbjct: 292 LCAQPGQLPF 301
>sp|Q5EA85|SEM4A_BOVIN Semaphorin-4A OS=Bos taurus GN=SEMA4A PE=2 SV=1
Length = 762
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Query: 2 DPIIYR----EP-LQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSR 56
+PI+ R +P L+T+ + +FV+++ VYFFF ETA EF K SR
Sbjct: 206 EPILLRTLGSQPVLKTDNFLRWLQPDASFVAAIPSTQVVYFFFEETASEFEFFEKLRISR 265
Query: 57 VARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPF 93
VA+VCK D GG + +WT+FLK++L C+ P PF
Sbjct: 266 VAQVCKNDVGGEKLLQKKWTTFLKAQLLCTQPEQLPF 302
>sp|O09126|SEM4D_MOUSE Semaphorin-4D OS=Mus musculus GN=Sema4d PE=1 SV=2
Length = 861
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 61/112 (54%), Gaps = 16/112 (14%)
Query: 2 DPIIYR----EPLQTEQYDSMSLNAPNFV----------SSLTQGDFVYFFFRETAVEFI 47
+PII R PL+TE Y LN P+FV + D VYFFF E +VE+
Sbjct: 185 EPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIQKSPDGPEGEDDKVYFFFTEVSVEYE 243
Query: 48 NCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
K + RVARVCK D+GG + +WTSFLK+RL CS P D F+ +Q
Sbjct: 244 FVFKLMIPRVARVCKGDQGGLRTLQKKWTSFLKARLICSKP-DSGLVFNILQ 294
>sp|O42237|SEM3E_CHICK Semaphorin-3E OS=Gallus gallus GN=SEMA3E PE=2 SV=1
Length = 785
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 10 LQTEQYDSMSLNAPNFVSSLTQGD-------FVYFFFRETAVEFINCGKAVYSRVARVCK 62
L+TE L P FV S D VY FF E A+E A+Y+RV RVC
Sbjct: 216 LRTEPDSEHLLKEPKFVGSYMIPDNEDHDDNKVYLFFTEKALEAETSTHAIYTRVGRVCV 275
Query: 63 YDRGGPHRFRNRWTSFLKSRLNCSVPG--DFPFYFDEIQ 99
D GG N+W++FLK+RL CSVPG +FDE++
Sbjct: 276 NDMGGQRIVVNKWSTFLKTRLVCSVPGRNGIDTHFDELE 314
>sp|Q62179|SEM4B_MOUSE Semaphorin-4B OS=Mus musculus GN=Sema4b PE=1 SV=2
Length = 823
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/107 (43%), Positives = 56/107 (52%), Gaps = 16/107 (14%)
Query: 2 DPIIYRE----PLQTEQYDSMSLNAPNFVSS----------LTQGDFVYFFFRETAVEFI 47
DP I R P +TE + L P FV+S + D +YFFF ET EF
Sbjct: 201 DPAISRSQSSRPTKTESSLNW-LQDPAFVASAYVPESLGSPIGDDDKIYFFFSETGQEFE 259
Query: 48 NCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGD-FPF 93
+ SRVARVCK D GG + RWTSFLK++L CS P D FPF
Sbjct: 260 FFENTIVSRVARVCKGDEGGERVLQQRWTSFLKAQLLCSRPDDGFPF 306
>sp|Q92854|SEM4D_HUMAN Semaphorin-4D OS=Homo sapiens GN=SEMA4D PE=1 SV=1
Length = 862
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 57/101 (56%), Gaps = 15/101 (14%)
Query: 2 DPIIYR----EPLQTEQYDSMSLNAPNFV----------SSLTQGDFVYFFFRETAVEFI 47
+PII R PL+TE Y LN P+FV S + D VYFFF E +VE+
Sbjct: 185 EPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYE 243
Query: 48 NCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVP 88
+ + R+ARVCK D+GG + +WTSFLK+RL CS P
Sbjct: 244 FVFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRP 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.142 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,548,094
Number of Sequences: 539616
Number of extensions: 1319034
Number of successful extensions: 2688
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2583
Number of HSP's gapped (non-prelim): 76
length of query: 100
length of database: 191,569,459
effective HSP length: 69
effective length of query: 31
effective length of database: 154,335,955
effective search space: 4784414605
effective search space used: 4784414605
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)