Query psy5392
Match_columns 100
No_of_seqs 123 out of 368
Neff 5.7
Searched_HMMs 29240
Date Sat Aug 17 01:26:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oky_B Putative uncharacterize 100.0 1.1E-42 3.7E-47 287.7 8.7 100 1-100 178-283 (565)
2 3nvq_A Semaphorin-7A; beta-pro 100.0 2.2E-37 7.5E-42 257.0 8.5 96 1-100 155-261 (590)
3 1q47_A Semaphorin 3A; beta pro 100.0 7.9E-37 2.7E-41 248.7 8.3 99 2-100 173-285 (495)
4 4gz8_A Semaphorin-3A; multi-do 100.0 1.1E-34 3.7E-39 243.4 8.3 99 2-100 181-293 (667)
5 3nvx_A Protein A39; beta-prope 100.0 9.4E-35 3.2E-39 231.4 6.1 91 2-100 119-220 (383)
6 1olz_A Semaphorin 4D; developm 100.0 2.7E-34 9.3E-39 240.2 8.5 97 2-100 164-274 (663)
7 2uzx_B Hepatocyte growth facto 99.9 5.3E-25 1.8E-29 185.5 5.6 88 2-100 191-298 (727)
8 3ol2_B Plexin-B1; beta-propell 99.9 3.3E-24 1.1E-28 176.1 6.5 73 10-100 190-262 (528)
9 3al9_A Plexin-A2; beta-propell 99.9 1.1E-23 3.8E-28 172.7 5.6 68 22-100 210-282 (539)
10 4fww_A Macrophage-stimulating 99.8 1.9E-21 6.4E-26 157.6 6.1 73 19-100 202-282 (527)
11 3oky_A Plexin-A2; transmembran 99.8 7.3E-20 2.5E-24 153.9 5.0 69 21-100 208-281 (681)
12 3nvn_B Plexin-C1; beta-propell 99.5 1E-14 3.5E-19 118.9 6.6 87 1-100 167-262 (476)
No 1
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=100.00 E-value=1.1e-42 Score=287.71 Aligned_cols=100 Identities=54% Similarity=0.991 Sum_probs=95.6
Q ss_pred CCCeeecC-----CccccccCccCCCCCceEEeeecCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCC-Ccccccc
Q psy5392 1 MDPIIYRE-----PLQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGG-PHRFRNR 74 (100)
Q Consensus 1 ~~~~i~R~-----~lrTe~~~~~wl~~p~FV~~~~~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG-~~~L~~k 74 (100)
.||+|||+ .||||+++++|||||+||+++.+||||||||+|+++|.+.+++.++||||||||||.|| +++|+++
T Consensus 178 ~d~~I~Rs~g~~~~lRT~~~~s~wLneP~FV~a~~~~d~VYFfF~E~a~E~~~~~k~~~sRVARVCk~D~GG~~r~L~~~ 257 (565)
T 3oky_B 178 IDAVIYRSLGDSPTLRTVKHDSKWLKEPYFVQAVDYGDYIYFFFREIAVEYNTMGKVVFPRVAQVCKNDMGGSQRVLEKQ 257 (565)
T ss_dssp CCEEEEEECTTSCCEECCTTCTTTCSSCEEEEEEEETTEEEEEEEEECGGGSSSSCCEEEEEEEEETTCCCCCSSSSTTB
T ss_pred CCceEEecCCCCCceeeeccchhhhcCCceeEEEeeCCEEEEEEccccccccccCcceeeeEeeeCCCCCCCcccccccc
Confidence 48999994 69999999999999999999999999999999999999889999999999999999999 6899999
Q ss_pred eeeeeeeeeccCCCCCCCCcCccccC
Q psy5392 75 WTSFLKSRLNCSVPGDFPFYFDEIQV 100 (100)
Q Consensus 75 WtTFlKArL~Cs~p~~~~~~fn~lq~ 100 (100)
|||||||||+|++||+.++|||+||+
T Consensus 258 WtSFlKarL~Cs~pg~~~~~fn~lQa 283 (565)
T 3oky_B 258 WTSFLKARLNCSVPGDSHFYFNILQA 283 (565)
T ss_dssp CSSCEEEEBCCEECSSSCEECCEEEE
T ss_pred eeEEEEEEEEcCCCCCCCccccceee
Confidence 99999999999999998999999985
No 2
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.2e-37 Score=257.04 Aligned_cols=96 Identities=30% Similarity=0.497 Sum_probs=87.5
Q ss_pred CCCeeecC----CccccccCccCCCCCceEEeee------cCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCcc
Q psy5392 1 MDPIIYRE----PLQTEQYDSMSLNAPNFVSSLT------QGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHR 70 (100)
Q Consensus 1 ~~~~i~R~----~lrTe~~~~~wl~~p~FV~~~~------~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~~ 70 (100)
.||+|+|+ +|||| ++|||||+||+++. +||||||||||++.|.+..++.++||||||||||.||.+.
T Consensus 155 ~~p~i~R~~g~~~lrt~---~~wL~eP~FV~s~~i~~~~~~~d~VYFFFrE~a~e~~~~~~~~~SRVARVCknD~GG~~~ 231 (590)
T 3nvq_A 155 KIPRFRRIRGESELYTS---DTVMQNPQFIKATIVHQDQAYDDKIYYFFREDNPDKNPEAPLNVSRVAQLCRGDQGGESS 231 (590)
T ss_dssp SCCCCEEEESSSCEECC---TTSCSSCEEEEEEEECCSSGGGCEEEEEEEEECSCCCTTSCSEEEEEEEEETTCCCBSST
T ss_pred CCceeEEcCCCCccccc---cchhcCCceeEEEeccccCCCCCEEEEEecccccccccccceeeeeeeeecCCCccccch
Confidence 37999995 68998 58999999999984 5799999999999999877888999999999999999885
Q ss_pred -cccceeeeeeeeeccCCCCCCCCcCccccC
Q psy5392 71 -FRNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100 (100)
Q Consensus 71 -L~~kWtTFlKArL~Cs~p~~~~~~fn~lq~ 100 (100)
|+++|||||||||+|++||. ++|||+||+
T Consensus 232 ll~~~WTSFlKarL~Cs~pg~-~~~FN~LQ~ 261 (590)
T 3nvq_A 232 LSVSKWNTFLKAMLVCSDAAT-NKNFNRLQD 261 (590)
T ss_dssp TTTTBCSCCEEEEBCCBCTTT-CCBCCEEEE
T ss_pred hhhcceeEEEEEEEECCCCCC-CCCccceee
Confidence 59999999999999999986 789999995
No 3
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=100.00 E-value=7.9e-37 Score=248.67 Aligned_cols=99 Identities=49% Similarity=0.818 Sum_probs=92.5
Q ss_pred CCeeecC-----CccccccCccCCCCCceEEeee-------cCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCc
Q psy5392 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPH 69 (100)
Q Consensus 2 ~~~i~R~-----~lrTe~~~~~wl~~p~FV~~~~-------~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~ 69 (100)
+|+|+|+ .+|||+++++||++|+||+++. .||+|||||+|++.|.+.+++.++||||||||||.||++
T Consensus 173 ~~~i~rsl~~~~~lrT~~~d~~~l~~p~FV~s~~i~~~~~~~~~~VYFff~e~~~e~~~~~~~~~SRVaRvCk~D~GG~~ 252 (495)
T 1q47_A 173 DFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHR 252 (495)
T ss_dssp CEEEEEEESSSCCEECCSSCTTTCSSCEEEEEEEECCSSSGGGCEEEEEEEEECCCCSSCCCCEEEEEEEEETTCCCBSS
T ss_pred CcceeeecCccccccccccCcccccCcceEEEEEecccccCCCCEEEEEEEeecccccccCcceEEEEEEECCCCCCccc
Confidence 7899994 6899999999999999999984 579999999999999988899999999999999999999
Q ss_pred ccccceeeeeeeeeccCCCCCC--CCcCccccC
Q psy5392 70 RFRNRWTSFLKSRLNCSVPGDF--PFYFDEIQV 100 (100)
Q Consensus 70 ~L~~kWtTFlKArL~Cs~p~~~--~~~fn~lq~ 100 (100)
+|+++||||+||||+|+.||+. ++|||+||+
T Consensus 253 ~l~~~wtSflka~L~Cs~~g~~g~~~~fn~lq~ 285 (495)
T 1q47_A 253 SLVNKWTTFLKARLICSVPGPNGIDTHFDELQD 285 (495)
T ss_dssp SSBTBCSSCEEEEBCCEECCTTSCCEECCEEEE
T ss_pred cchhccceEEEEEEEccCCCCCCCccccCceee
Confidence 9999999999999999999864 799999996
No 4
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=100.00 E-value=1.1e-34 Score=243.36 Aligned_cols=99 Identities=49% Similarity=0.832 Sum_probs=91.6
Q ss_pred CCeeecC-----CccccccCccCCCCCceEEeee-------cCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCc
Q psy5392 2 DPIIYRE-----PLQTEQYDSMSLNAPNFVSSLT-------QGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPH 69 (100)
Q Consensus 2 ~~~i~R~-----~lrTe~~~~~wl~~p~FV~~~~-------~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~ 69 (100)
+|+|||+ ++|||+++++||++|+||+++. .||+|||||+|+++|.+.+++.++||||||||||.||++
T Consensus 181 d~~I~Rsl~~~~~lrT~~~~s~~l~~P~FV~s~~i~~~~~~~~d~VYFFFrE~a~e~~~~~k~~~SRVaRVCknD~GG~~ 260 (667)
T 4gz8_A 181 DFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHSGKATHARIGQICKNDFGGHR 260 (667)
T ss_dssp CEEEEEESCSSCCEECCSSCTTTCSSCEEEEEEEECCSSSTTSCEEEEEEEEECCCC-CCCCCEEEEEEEEETTCCCCSS
T ss_pred CceEEecCCCCCcceeeecccccccCCcceeeeeecccccCCCCEEEEEEEEEeeccCCcccceeeeeeeeCCCCCCCcc
Confidence 7899994 7999999999999999999974 489999999999999988999999999999999999999
Q ss_pred ccccceeeeeeeeeccCCCCC--CCCcCccccC
Q psy5392 70 RFRNRWTSFLKSRLNCSVPGD--FPFYFDEIQV 100 (100)
Q Consensus 70 ~L~~kWtTFlKArL~Cs~p~~--~~~~fn~lq~ 100 (100)
+|+++||||+||||+|++||+ .+++||+||+
T Consensus 261 ~L~~~wtSFlKarL~Cs~pg~~~~~~~fn~Lq~ 293 (667)
T 4gz8_A 261 SLVNKWTTFLKARLICSVPGPNGIDTHFDELQD 293 (667)
T ss_dssp SSTTBCSSCEEEEECCEECCTTSCCEECCEEEE
T ss_pred ccccceeeEEEEEEEeecCCCCcccchhHhhhh
Confidence 999999999999999999986 5789999984
No 5
>3nvx_A Protein A39; beta-propeller, viral protein; HET: NAG; 2.00A {Vaccinia virus} PDB: 3nvn_A*
Probab=100.00 E-value=9.4e-35 Score=231.35 Aligned_cols=91 Identities=26% Similarity=0.428 Sum_probs=79.5
Q ss_pred CCeeecC------CccccccCccCCCCCceEEeee----cCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCccc
Q psy5392 2 DPIIYRE------PLQTEQYDSMSLNAPNFVSSLT----QGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRF 71 (100)
Q Consensus 2 ~~~i~R~------~lrTe~~~~~wl~~p~FV~~~~----~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~~L 71 (100)
+|+|+|+ +|||+ ++|||+|+||+++. +||||||||+|++.|. .+.++||||||||||.||+++|
T Consensus 119 ~p~i~R~~g~~~~~LrT~---d~wLn~P~FV~s~~~~~~dddkVYFFFrE~a~e~---~~~~~SRVARVCknD~GG~~~L 192 (383)
T 3nvx_A 119 IKRWRRFDGPCGYDLYTA---DNVIPKDGLRGAFVDKDGTYDKVYILFTDTIGSK---RIVKIPYIAQMCLNDEGGPSSL 192 (383)
T ss_dssp CCCCEECSBTTBSCEECC---TTSSCTTCCSEEEEEEETTEEEEEEEEEEEECSS---SCEEEEEEEEEETTCCCCSSGG
T ss_pred CceEEecCCCCCcccccc---ccccCCcceeEEEccccCCCCEEEEEEEeecccc---cceeeehhhhcCccCCCCcccc
Confidence 7999994 57887 57999999999985 5799999999999764 3568999999999999999988
Q ss_pred c-cceeeeeeeeeccCCCCCCCCcCccccC
Q psy5392 72 R-NRWTSFLKSRLNCSVPGDFPFYFDEIQV 100 (100)
Q Consensus 72 ~-~kWtTFlKArL~Cs~p~~~~~~fn~lq~ 100 (100)
+ ++|||||||||+|++||.. +||.+|+
T Consensus 193 ~~~kWTSFLKArL~Cs~pG~~--~~nllq~ 220 (383)
T 3nvx_A 193 SSHRWSTFLKVELECDIDGRS--YRQIIHS 220 (383)
T ss_dssp GTTBCSSCEEEEECCEETTEE--CCEEEEE
T ss_pred hhcceeeEEEEEEECCCCCcc--cccEEEE
Confidence 5 9999999999999999863 6788774
No 6
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=100.00 E-value=2.7e-34 Score=240.24 Aligned_cols=97 Identities=45% Similarity=0.772 Sum_probs=89.4
Q ss_pred CCeeecC----CccccccCccCCCCCceEEee----------ecCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCC
Q psy5392 2 DPIIYRE----PLQTEQYDSMSLNAPNFVSSL----------TQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGG 67 (100)
Q Consensus 2 ~~~i~R~----~lrTe~~~~~wl~~p~FV~~~----------~~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG 67 (100)
+|+|+|+ .+||| ++++||++|+||+++ ..|++|||||+|++.|...+++.++||||||||||.||
T Consensus 164 ~p~i~Rs~~~~~lrTe-~~~~~L~~p~FV~s~~i~~~~~~~~~~~~~VYFff~e~~~e~~~~~k~~~SRVaRvCk~D~GG 242 (663)
T 1olz_A 164 EPIISRNSSHSPLRTE-YAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEFVFRVLIPRIARVCKGDQGG 242 (663)
T ss_dssp SEEEEEECSSCCBCCC-SSTTTCSSCEEEEEEEECCCC----CCCCEEEEEEEEECSSCBCSSCCEEEEEEEEETTCCCC
T ss_pred CceEEecccccccccc-chhhhccCCceeEeeeeeccccccccCCCEEEEEEeeccccccccCcceeeEEEEECCCCCCc
Confidence 6999993 68998 689999999999996 35899999999999999888999999999999999999
Q ss_pred CcccccceeeeeeeeeccCCCCCCCCcCccccC
Q psy5392 68 PHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100 (100)
Q Consensus 68 ~~~L~~kWtTFlKArL~Cs~p~~~~~~fn~lq~ 100 (100)
+++|+++||||+||||+|+.|+ .++|||+||+
T Consensus 243 ~~~l~~~wtSflka~L~Cs~~~-~~~~fn~lq~ 274 (663)
T 1olz_A 243 LRTLQKKWTSFLKARLICSRPD-SGLVFNVLRD 274 (663)
T ss_dssp SSSSTTSCSSCEEEEECCEEGG-GTEECCEEEE
T ss_pred ccccccccceEEEEeEEecCCC-CCcccCceee
Confidence 9999999999999999999995 3789999995
No 7
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor, leucine rich repeat, receptor ectodomain, signaling protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B 1shy_B 1ssl_A
Probab=99.90 E-value=5.3e-25 Score=185.51 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=73.0
Q ss_pred CCeeecCCccccc------------cCccCC--CCCceEEeeecCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCC
Q psy5392 2 DPIIYREPLQTEQ------------YDSMSL--NAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGG 67 (100)
Q Consensus 2 ~~~i~R~~lrTe~------------~~~~wl--~~p~FV~~~~~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG 67 (100)
+|+|+|+..+|+. .+++|+ ++|+||++|..|++|||||+|.+.+. ++.++||||||||||.+
T Consensus 191 ~~is~R~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fV~~f~~~~~vYF~f~e~~~~~---~~~~~SRvaRvCk~D~~- 266 (727)
T 2uzx_B 191 HSISVRRLKETKDGFMFLTDQSYIDVLPEFRDSYPIKYVHAFESNNFIYFLTVQRETLD---AQTFHTRIIRFCSINSG- 266 (727)
T ss_dssp CSEEEEEECTTCSCEECCSGGGEECCCGGGTTTSCEEEEEEEEETTEEEEEEEEBSSTT---CSSBCCEEEEECCSSSC-
T ss_pred cceEEccCCCCcccceeecccceEEeccccccccCCCceeeeecCCEEEEEEeeccccc---cccceeEEEEEecCCCC-
Confidence 5899998666553 234566 78999999999999999999987553 58899999999999996
Q ss_pred CcccccceeeeeeeeeccCCCCC------CCCcCccccC
Q psy5392 68 PHRFRNRWTSFLKSRLNCSVPGD------FPFYFDEIQV 100 (100)
Q Consensus 68 ~~~L~~kWtTFlKArL~Cs~p~~------~~~~fn~lq~ 100 (100)
||||+||||+|+.||+ .+++||+|||
T Consensus 267 -------wtSflka~L~Cs~~~~~~~r~~~~~~fn~lQa 298 (727)
T 2uzx_B 267 -------LHSYMEMPLECILTEKRKKRSTKKEVFNILQA 298 (727)
T ss_dssp -------CCSCEEEEEEEEEC---------CEEECEEEE
T ss_pred -------eeEEEEEEEEecCCCcccccccCCcCcCceeE
Confidence 9999999999999984 4679999996
No 8
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=99.89 E-value=3.3e-24 Score=176.06 Aligned_cols=73 Identities=27% Similarity=0.432 Sum_probs=64.9
Q ss_pred ccccccCccCCCCCceEEeeecCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCcccccceeeeeeeeeccCCCC
Q psy5392 10 LQTEQYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPG 89 (100)
Q Consensus 10 lrTe~~~~~wl~~p~FV~~~~~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~~L~~kWtTFlKArL~Cs~p~ 89 (100)
|||+ ++++| +|+||++|..|++|||||+|++.|.. ++.++||||||||||.+ ||||+||||+|+.+
T Consensus 190 l~t~-~~~~~--~~~FV~aF~~~~~VYF~f~e~~~~~~--~~~~~sRvaRvCk~D~~--------w~Sy~k~~L~C~g~- 255 (528)
T 3ol2_B 190 LAVG-RLSEY--SHHFVSAFARGASAYFLFLRRDLQAQ--SRAFRAYVSRVCLRDQH--------YYSYVELPLACEGG- 255 (528)
T ss_dssp CCCS-CHHHH--CCEEEEEEEETTEEEEEEEEECTTST--TCCEEEEEEEEESSCSS--------CTTCEEEEEESTTT-
T ss_pred eEec-ccccC--CCcEEEEEecCCEEEEEEEEEccccc--ccccccceeeeeCCCCC--------eeEEEEEEEecCCC-
Confidence 5665 56778 89999999999999999999998874 68899999999999994 99999999999942
Q ss_pred CCCCcCccccC
Q psy5392 90 DFPFYFDEIQV 100 (100)
Q Consensus 90 ~~~~~fn~lq~ 100 (100)
+||+|||
T Consensus 256 ----~fn~lQa 262 (528)
T 3ol2_B 256 ----RYGLIQA 262 (528)
T ss_dssp ----TSCEEEE
T ss_pred ----CCCceeE
Confidence 7999996
No 9
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=99.88 E-value=1.1e-23 Score=172.70 Aligned_cols=68 Identities=22% Similarity=0.430 Sum_probs=57.5
Q ss_pred CCceEEeeecCCEEEEEEeeecc-----ccccCCceeeEEEeeeecCCCCCCcccccceeeeeeeeeccCCCCCCCCcCc
Q psy5392 22 APNFVSSLTQGDFVYFFFRETAV-----EFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFD 96 (100)
Q Consensus 22 ~p~FV~~~~~~dkvYffF~E~a~-----e~~~~~~~~~srVaRVCk~D~GG~~~L~~kWtTFlKArL~Cs~p~~~~~~fn 96 (100)
+|+||++|..+++|||||+|.+. |.+.+++.++||||||||||. +||||+||||+|+.|| .+||
T Consensus 210 ~~~fV~aF~~~~~VYF~~~e~~~~~~~~e~~~~~~~~~SRvaRvCk~D~--------~wtSflka~L~Cs~~g---~~fn 278 (539)
T 3al9_A 210 DIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTRAG---VEYR 278 (539)
T ss_dssp CCEEEEEEEETTEEEEEEEEECCC----------CBEEEEEEEEESSCT--------TCTTCEEEEEEEEETT---EEEE
T ss_pred CcceEEEEecCCEEEEEEEecccccccccccccccceeeEEEEEcCCcc--------ccceEEEEEeecCCCC---cCcc
Confidence 78899999999999999999975 444578899999999999996 6999999999999987 4799
Q ss_pred cccC
Q psy5392 97 EIQV 100 (100)
Q Consensus 97 ~lq~ 100 (100)
+||+
T Consensus 279 ~lqa 282 (539)
T 3al9_A 279 LLQA 282 (539)
T ss_dssp EEEE
T ss_pred hhhe
Confidence 9985
No 10
>4fww_A Macrophage-stimulating protein receptor; beta-propeller, cysteine-knot, receptor tyrosine kinase, MAC stimulating protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo sapiens}
Probab=99.84 E-value=1.9e-21 Score=157.58 Aligned_cols=73 Identities=22% Similarity=0.331 Sum_probs=63.8
Q ss_pred CCCCCceEEeeecCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCcccccceeeeeeeeeccCCCCCC-------
Q psy5392 19 SLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDF------- 91 (100)
Q Consensus 19 wl~~p~FV~~~~~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~~L~~kWtTFlKArL~Cs~p~~~------- 91 (100)
+.++++||++|..+++|||||+|.+.+. .+++.++||||||||||.| |+||+|+||.|+.|+..
T Consensus 202 ~~~~~~fV~~F~~~~~vYF~f~e~~~~~-~~~~~~~SRvaRVCk~D~~--------~~Sy~e~~L~C~~~~~~~~~~~~~ 272 (527)
T 4fww_A 202 VSYSIEYVHSFHTGAFVYFLTVQPASVT-DDPSALHTRLARLSATEPE--------LGDYRELVLDCRFAPKLVPRGSPE 272 (527)
T ss_dssp TTCCCEEEEEEEETTEEEEEEEEESSTT-SCTTSEEEEEEEEESSSSC--------CTTCEEEEEEEEECC---------
T ss_pred ccCCCceEeeeecCCEEEEEEEEEcccc-CCCcccceeeeEEcccCCC--------cceEEEEEEEeecccccccccccc
Confidence 4568999999999999999999999776 4688999999999999998 99999999999998653
Q ss_pred -CCcCccccC
Q psy5392 92 -PFYFDEIQV 100 (100)
Q Consensus 92 -~~~fn~lq~ 100 (100)
.++||+||+
T Consensus 273 ~~~~yn~lQ~ 282 (527)
T 4fww_A 273 GGQPYPVLQV 282 (527)
T ss_dssp -CEEECEEEE
T ss_pred CCcccceeee
Confidence 355999985
No 11
>3oky_A Plexin-A2; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okt_A* 4gza_A
Probab=99.78 E-value=7.3e-20 Score=153.93 Aligned_cols=69 Identities=22% Similarity=0.386 Sum_probs=58.4
Q ss_pred CCCceEEeeecCCEEEEEEeeeccccc-----cCCceeeEEEeeeecCCCCCCcccccceeeeeeeeeccCCCCCCCCcC
Q psy5392 21 NAPNFVSSLTQGDFVYFFFRETAVEFI-----NCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYF 95 (100)
Q Consensus 21 ~~p~FV~~~~~~dkvYffF~E~a~e~~-----~~~~~~~srVaRVCk~D~GG~~~L~~kWtTFlKArL~Cs~p~~~~~~f 95 (100)
++++||++|..+++|||||+|++.+.. ..++.++||||||||+|. +||||+||||+|+.||. +|
T Consensus 208 y~i~fV~aF~~~~fVYFlf~q~~~~~~~~~~~~~~~~~~SRVaRvCk~D~--------~wtSylka~L~C~~~g~---~f 276 (681)
T 3oky_A 208 FDIFYIYGFASGGFVYFLTVQPETPDGMAINSAGDLFYTSRIVRLCKDDP--------KFHSYVSLPFGCTRAGV---EY 276 (681)
T ss_dssp CCCEEEEEEEETTEEEEEEEEECCC----------CCEEEEEEEEESSCT--------TCTTCEEEEEEEEETTE---EE
T ss_pred cccceEEEEEcCCEEEEEEEeecccccccccccccceeeEEEEEecCCCC--------CeeEEEEEEEecCCCCc---CC
Confidence 568999999999999999999987752 235678999999999995 69999999999999864 78
Q ss_pred ccccC
Q psy5392 96 DEIQV 100 (100)
Q Consensus 96 n~lq~ 100 (100)
|.|||
T Consensus 277 n~lQa 281 (681)
T 3oky_A 277 RLLQA 281 (681)
T ss_dssp CEEEE
T ss_pred CceeE
Confidence 99986
No 12
>3nvn_B Plexin-C1; beta-propeller, signaling, viral protein-signaling protein C; HET: NDG NAG; 2.26A {Homo sapiens} PDB: 3nvq_B*
Probab=99.53 E-value=1e-14 Score=118.88 Aligned_cols=87 Identities=15% Similarity=0.140 Sum_probs=70.4
Q ss_pred CCCeeec-----CCccccccCccCCC---CC-ceEEeeecCCEEEEEEeeeccccccCCceeeEEEeeeecCCCCCCccc
Q psy5392 1 MDPIIYR-----EPLQTEQYDSMSLN---AP-NFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRF 71 (100)
Q Consensus 1 ~~~~i~R-----~~lrTe~~~~~wl~---~p-~FV~~~~~~dkvYffF~E~a~e~~~~~~~~~srVaRVCk~D~GG~~~L 71 (100)
++|+|.| ..|+|+++++.||+ ++ +||.+|+.++.|||+|.+-+-... .-..+||||||||+|..
T Consensus 167 ~~~ai~~~~~~~r~l~~~~~~~~~~~~~~~~~~fV~af~~~~~vyf~~y~y~~~s~--~~~~~sriaRvCk~D~~----- 239 (476)
T 3nvn_B 167 HDTAIALKDTEGRSLATQELGRLKLCEGAGSLHFVDAFLWNGSIYFPYYPYNYTSG--AATGWPSMARIAQSTEV----- 239 (476)
T ss_dssp TTEEEEEEESSSGGGCCCTTSEEEBCTTSCCEEECCCEECSSEEEEEEEEEETTTT--EECSCCEEEEEESSSSC-----
T ss_pred cccceeeccCcccccchhhhcceeeccCCCCceeeeehhcCceeEEEEEeeccccC--CccceeeEEEEeecCCC-----
Confidence 3688985 36899999999999 88 999999999999999987552221 11579999999999962
Q ss_pred ccceeeeeeeeeccCCCCCCCCcCccccC
Q psy5392 72 RNRWTSFLKSRLNCSVPGDFPFYFDEIQV 100 (100)
Q Consensus 72 ~~kWtTFlKArL~Cs~p~~~~~~fn~lq~ 100 (100)
+||+||+|.|+.++... ||.||+
T Consensus 240 ----~sy~e~~L~C~~~~~~~--y~ll~s 262 (476)
T 3nvn_B 240 ----LFQGQASLDCGHGHPDG--RRLLLS 262 (476)
T ss_dssp ----CEEEEEEECCCSSCSSC--CCEEEE
T ss_pred ----cEEEEEEEeccCCCCCC--cceEEe
Confidence 79999999999976432 787763
Done!