RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5392
         (100 letters)



>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 495

 Score =  121 bits (305), Expect = 1e-34
 Identities = 49/112 (43%), Positives = 68/112 (60%), Gaps = 14/112 (12%)

Query: 2   DPIIYR-----EPLQTEQYDSMSLNAPNFVSSLTQ-------GDFVYFFFRETAVEFINC 49
           D  I+R      P++TEQ+DS  LN P F+S+           D VYFFFRE A++  + 
Sbjct: 173 DFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAHLIPESDNPEDDKVYFFFRENAIDGEHS 232

Query: 50  GKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGD--FPFYFDEIQ 99
           GKA ++R+ ++CK D GG     N+WT+FLK+RL CSVPG      +FDE+Q
Sbjct: 233 GKATHARIGQICKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQ 284


>d1olza2 b.69.12.1 (A:3-480) Semaphorin 4d {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 478

 Score =  113 bits (283), Expect = 1e-31
 Identities = 40/111 (36%), Positives = 57/111 (51%), Gaps = 14/111 (12%)

Query: 2   DPIIYREPLQ---TEQYDSMSLNAPNFVSS----------LTQGDFVYFFFRETAVEFIN 48
           +PII R         +Y    LN P+FV +            + D VYFFF E +VE+  
Sbjct: 162 EPIISRNSSHSPLRTEYAIPWLNEPSFVFADVIRKSPDSPDGEDDRVYFFFTEVSVEYEF 221

Query: 49  CGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLNCSVPGDFPFYFDEIQ 99
             + +  R+ARVCK D+GG    + +WTSFLK+RL CS P      F+ ++
Sbjct: 222 VFRVLIPRIARVCKGDQGGLRTLQKKWTSFLKARLICSRPDS-GLVFNVLR 271


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 77.9 bits (191), Expect = 6e-19
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 14  QYDSMSLNAPNFVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRN 73
             +        +V +    +F+YF   +         +  ++R+ R C  + G       
Sbjct: 199 LPEFRDSYPIKYVHAFESNNFIYFLTVQRETL---DAQTFHTRIIRFCSINSG------- 248

Query: 74  RWTSFLKSRLNCSVPGDFP------FYFDEIQ 99
              S+++  L C +    P        F+ +Q
Sbjct: 249 -LHSYMEMPLECILTELVPRGSTKKEVFNILQ 279


>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 170

 Score = 23.4 bits (49), Expect = 5.8
 Identities = 10/76 (13%), Positives = 20/76 (26%)

Query: 25  FVSSLTQGDFVYFFFRETAVEFINCGKAVYSRVARVCKYDRGGPHRFRNRWTSFLKSRLN 84
            V    +G F  F        F+     +     +   +D  G  R+ +    + +    
Sbjct: 22  LVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQA 81

Query: 85  CSVPGDFPFYFDEIQV 100
             V  D        + 
Sbjct: 82  AIVVYDITNEESFARA 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.454 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 398,201
Number of extensions: 15732
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 4
Length of query: 100
Length of database: 2,407,596
Length adjustment: 62
Effective length of query: 38
Effective length of database: 1,556,336
Effective search space: 59140768
Effective search space used: 59140768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)