Query psy5395
Match_columns 237
No_of_seqs 111 out of 1123
Neff 7.9
Searched_HMMs 46136
Date Sat Aug 17 01:29:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1692|consensus 100.0 1.6E-47 3.4E-52 305.0 16.0 187 42-233 14-200 (201)
2 KOG3287|consensus 100.0 2E-41 4.4E-46 274.4 21.8 192 43-234 30-229 (236)
3 KOG1693|consensus 100.0 3.4E-40 7.3E-45 264.4 18.3 187 46-235 21-208 (209)
4 KOG1690|consensus 100.0 4.8E-39 1E-43 257.4 17.5 185 42-232 14-213 (215)
5 KOG1691|consensus 100.0 3.7E-37 8.1E-42 250.0 20.4 186 42-232 16-208 (210)
6 PF01105 EMP24_GP25L: emp24/gp 100.0 5.7E-38 1.2E-42 255.0 0.2 177 48-229 1-183 (183)
7 PF13897 GOLD_2: Golgi-dynamic 93.9 0.83 1.8E-05 35.4 9.3 31 109-139 104-134 (136)
8 PF01835 A2M_N: MG2 domain; I 93.7 1.4 3.1E-05 31.7 10.1 62 66-127 12-88 (99)
9 smart00557 IG_FLMN Filamin-typ 93.5 0.87 1.9E-05 32.7 8.5 46 81-126 30-78 (93)
10 PF04151 PPC: Bacterial pre-pe 90.7 1 2.2E-05 30.4 5.8 61 59-122 3-68 (70)
11 PF00630 Filamin: Filamin/ABP2 84.5 4.6 9.9E-05 28.9 6.4 43 83-125 42-91 (101)
12 PF13860 FlgD_ig: FlgD Ig-like 83.8 6.1 0.00013 27.5 6.6 33 68-101 11-43 (81)
13 PF09315 DUF1973: Domain of un 83.3 18 0.00039 29.5 9.9 55 84-140 42-100 (179)
14 PF11589 DUF3244: Domain of un 81.9 5.4 0.00012 29.4 5.9 58 67-127 35-96 (106)
15 PF15417 DUF4624: Domain of un 78.5 19 0.00041 27.1 7.6 78 55-139 36-121 (132)
16 KOG1693|consensus 76.5 43 0.00093 27.8 11.4 163 35-213 21-197 (209)
17 TIGR03503 conserved hypothetic 76.3 54 0.0012 30.0 11.5 59 80-138 239-300 (374)
18 PF10779 XhlA: Haemolysin XhlA 72.8 27 0.00058 23.8 9.0 24 158-181 6-29 (71)
19 PRK06655 flgD flagellar basal 72.1 14 0.0003 31.3 6.4 56 69-125 113-179 (225)
20 PF07888 CALCOCO1: Calcium bin 71.6 59 0.0013 31.2 11.0 75 50-127 14-99 (546)
21 PF04728 LPP: Lipoprotein leuc 71.3 26 0.00056 23.0 6.6 26 160-185 5-30 (56)
22 PF05738 Cna_B: Cna protein B- 70.9 5.7 0.00012 26.4 3.2 44 84-127 3-48 (70)
23 PRK12813 flgD flagellar basal 69.6 16 0.00034 31.0 6.2 57 68-126 110-175 (223)
24 PF10528 PA14_2: GLEYA domain; 68.9 15 0.00031 27.6 5.3 47 54-100 55-102 (113)
25 PF13620 CarboxypepD_reg: Carb 67.6 5.9 0.00013 27.1 2.7 43 84-126 16-58 (82)
26 PRK05842 flgD flagellar basal 67.2 19 0.00041 31.8 6.3 57 69-125 149-221 (295)
27 PRK12812 flgD flagellar basal 66.4 17 0.00038 31.4 5.9 55 69-124 128-193 (259)
28 KOG0518|consensus 64.9 17 0.00037 37.2 6.2 61 68-128 868-931 (1113)
29 PF07495 Y_Y_Y: Y_Y_Y domain; 62.8 39 0.00085 21.9 7.1 41 84-126 9-49 (66)
30 KOG3202|consensus 61.3 78 0.0017 27.0 8.8 67 156-222 150-233 (235)
31 PF12690 BsuPI: Intracellular 59.7 57 0.0012 22.9 6.6 19 83-101 24-42 (82)
32 PF15432 Sec-ASP3: Accessory S 59.5 59 0.0013 25.0 7.1 57 70-127 57-114 (128)
33 PF13473 Cupredoxin_1: Cupredo 57.4 27 0.0006 25.2 4.9 54 63-120 37-90 (104)
34 PRK12634 flgD flagellar basal 56.6 90 0.0019 26.3 8.4 45 81-125 120-175 (221)
35 PF05739 SNARE: SNARE domain; 56.0 53 0.0011 21.2 6.6 45 158-202 4-48 (63)
36 PRK14155 heat shock protein Gr 55.0 78 0.0017 26.5 7.7 55 155-209 17-71 (208)
37 PRK00022 lolB outer membrane l 53.0 1.2E+02 0.0025 24.9 8.5 33 66-99 58-90 (202)
38 PRK12633 flgD flagellar basal 52.9 37 0.00079 28.8 5.5 55 70-125 117-182 (230)
39 PRK14081 triple tyrosine motif 52.6 97 0.0021 30.6 8.9 58 68-126 401-458 (667)
40 PF01519 DUF16: Protein of unk 51.0 97 0.0021 22.9 6.7 45 158-202 53-97 (102)
41 PF05377 FlaC_arch: Flagella a 50.7 68 0.0015 20.9 6.0 27 160-186 2-28 (55)
42 PF08842 Mfa2: Fimbrillin-A as 50.0 32 0.0007 29.0 4.9 60 66-125 5-77 (283)
43 PRK14154 heat shock protein Gr 50.0 1.1E+02 0.0025 25.5 7.9 55 156-210 57-111 (208)
44 PRK14147 heat shock protein Gr 50.0 1.1E+02 0.0025 24.6 7.7 54 156-209 23-76 (172)
45 PRK14140 heat shock protein Gr 49.4 1.3E+02 0.0029 24.8 8.1 56 154-209 40-95 (191)
46 PRK14163 heat shock protein Gr 49.0 1.1E+02 0.0025 25.6 7.7 55 155-209 44-98 (214)
47 PRK14139 heat shock protein Gr 46.3 1.4E+02 0.003 24.5 7.8 54 156-209 37-90 (185)
48 PRK09619 flgD flagellar basal 46.3 58 0.0013 27.4 5.7 56 69-126 110-173 (218)
49 PRK14143 heat shock protein Gr 46.0 1.5E+02 0.0032 25.4 8.1 55 154-208 70-124 (238)
50 PF04136 Sec34: Sec34-like fam 44.8 1.6E+02 0.0034 23.4 7.9 56 158-213 28-83 (157)
51 PF14977 FAM194: FAM194 protei 44.6 1.9E+02 0.0041 24.2 11.0 44 58-102 48-103 (208)
52 PRK14161 heat shock protein Gr 44.2 1.7E+02 0.0037 23.8 7.9 53 156-208 24-76 (178)
53 PF05399 EVI2A: Ectropic viral 43.9 32 0.0007 28.8 3.6 39 198-236 125-173 (227)
54 PRK15396 murein lipoprotein; P 43.8 1.1E+02 0.0024 21.4 6.6 26 160-185 27-52 (78)
55 PRK14151 heat shock protein Gr 43.1 1.7E+02 0.0037 23.8 7.7 52 156-207 25-76 (176)
56 PRK14145 heat shock protein Gr 42.7 2E+02 0.0042 23.9 8.1 54 156-209 50-103 (196)
57 PF14524 Wzt_C: Wzt C-terminal 42.4 1.4E+02 0.003 22.1 7.8 59 66-125 32-93 (142)
58 PF00517 GP41: Retroviral enve 42.0 1.2E+02 0.0027 25.1 6.9 61 159-219 102-168 (204)
59 PF09753 Use1: Membrane fusion 41.7 2.2E+02 0.0047 24.2 8.7 24 204-228 228-251 (251)
60 PRK09973 putative outer membra 41.6 1.3E+02 0.0028 21.5 6.5 44 159-202 25-68 (85)
61 PF07835 COX4_pro_2: Bacterial 40.9 75 0.0016 19.6 4.1 28 191-218 14-41 (44)
62 PRK14162 heat shock protein Gr 40.8 2E+02 0.0043 23.8 7.9 46 156-201 44-89 (194)
63 PRK14158 heat shock protein Gr 40.2 2E+02 0.0044 23.8 7.8 54 156-209 45-98 (194)
64 PRK14148 heat shock protein Gr 40.2 2.1E+02 0.0045 23.7 7.9 46 156-201 45-90 (195)
65 PF11166 DUF2951: Protein of u 40.1 1.5E+02 0.0031 21.7 9.0 60 163-228 37-96 (98)
66 PRK06798 fliD flagellar cappin 38.3 1.9E+02 0.004 27.1 8.2 59 159-232 380-438 (440)
67 PRK14081 triple tyrosine motif 37.4 4.3E+02 0.0092 26.3 11.3 69 68-139 305-378 (667)
68 KOG2861|consensus 37.3 77 0.0017 29.3 5.3 54 163-222 338-391 (399)
69 KOG0518|consensus 36.9 1E+02 0.0022 32.0 6.4 57 69-125 376-436 (1113)
70 PRK02710 plastocyanin; Provisi 35.7 1.8E+02 0.004 21.6 10.1 71 45-120 27-102 (119)
71 PF09323 DUF1980: Domain of un 35.5 64 0.0014 26.1 4.2 34 198-231 27-60 (182)
72 PF01025 GrpE: GrpE; InterPro 35.0 2.2E+02 0.0047 22.2 8.2 48 154-201 14-61 (165)
73 PRK14153 heat shock protein Gr 34.7 2.6E+02 0.0057 23.1 7.8 46 156-201 38-83 (194)
74 PRK14141 heat shock protein Gr 34.6 2.6E+02 0.0056 23.4 7.7 53 158-210 38-90 (209)
75 KOG3878|consensus 33.5 2.3E+02 0.005 25.6 7.5 29 110-138 437-465 (469)
76 PF05506 DUF756: Domain of unk 33.2 1.7E+02 0.0037 20.4 6.7 48 46-94 31-81 (89)
77 PRK10803 tol-pal system protei 33.1 1.1E+02 0.0024 26.4 5.5 42 156-197 59-100 (263)
78 PF10805 DUF2730: Protein of u 32.7 1.6E+02 0.0034 21.7 5.5 45 158-202 42-88 (106)
79 PF10779 XhlA: Haemolysin XhlA 32.6 1.6E+02 0.0034 19.9 9.1 19 163-181 4-22 (71)
80 cd03455 SAV4209 SAV4209 is a S 31.9 1.9E+02 0.0041 21.2 6.1 38 63-100 78-118 (123)
81 PRK13211 N-acetylglucosamine-b 31.8 3.9E+02 0.0085 25.4 9.2 58 69-126 327-389 (478)
82 COG1723 Uncharacterized conser 31.6 64 0.0014 28.8 3.7 55 162-222 270-324 (331)
83 PF12958 DUF3847: Protein of u 31.3 2E+02 0.0043 20.6 7.1 54 154-212 4-57 (86)
84 PRK14157 heat shock protein Gr 31.1 3.1E+02 0.0068 23.3 7.7 52 158-209 84-135 (227)
85 PRK14144 heat shock protein Gr 31.1 3.1E+02 0.0067 22.8 7.8 53 156-208 50-102 (199)
86 TIGR03096 nitroso_cyanin nitro 30.6 1.6E+02 0.0034 22.9 5.4 15 105-119 101-115 (135)
87 PRK14159 heat shock protein Gr 30.3 3E+02 0.0065 22.4 7.8 50 158-207 30-79 (176)
88 KOG3385|consensus 30.0 1.8E+02 0.0038 22.0 5.3 32 158-189 36-67 (118)
89 PF04678 DUF607: Protein of un 29.7 3E+02 0.0065 22.2 9.1 47 165-211 57-103 (180)
90 PF09889 DUF2116: Uncharacteri 29.7 1.7E+02 0.0037 19.3 4.7 16 197-212 35-50 (59)
91 cd05860 Ig4_SCFR Fourth immuno 29.6 92 0.002 22.9 3.8 27 112-141 74-100 (101)
92 PRK14160 heat shock protein Gr 29.2 3.4E+02 0.0075 22.7 7.9 43 157-199 67-109 (211)
93 COG5415 Predicted integral mem 28.8 3.1E+02 0.0067 23.1 7.1 27 159-185 16-42 (251)
94 PF13464 DUF4115: Domain of un 28.5 1.5E+02 0.0032 20.1 4.6 41 84-126 8-48 (77)
95 COG0576 GrpE Molecular chapero 28.2 3.4E+02 0.0073 22.3 7.9 50 158-207 43-92 (193)
96 PF05528 Coronavirus_5: Corona 28.0 22 0.00047 24.5 0.2 15 4-18 38-52 (82)
97 COG5415 Predicted integral mem 27.9 3.7E+02 0.008 22.7 9.4 22 159-180 23-44 (251)
98 PRK14146 heat shock protein Gr 27.8 3.7E+02 0.0079 22.6 7.7 51 158-208 61-111 (215)
99 PRK14164 heat shock protein Gr 27.8 3.7E+02 0.0081 22.6 8.0 51 159-209 78-128 (218)
100 PF08537 NBP1: Fungal Nap bind 27.6 1.6E+02 0.0035 26.3 5.5 43 157-199 181-223 (323)
101 PF10670 DUF4198: Domain of un 27.6 2.4E+02 0.0052 22.6 6.5 20 103-122 190-209 (215)
102 PF10754 DUF2569: Protein of u 27.4 1.5E+02 0.0033 23.1 5.0 33 204-236 54-86 (149)
103 PRK14156 heat shock protein Gr 26.8 3.5E+02 0.0076 22.0 7.7 51 158-208 34-84 (177)
104 PF03554 Herpes_UL73: UL73 vir 26.6 1.1E+02 0.0025 21.6 3.7 28 197-224 44-71 (82)
105 TIGR03711 acc_sec_asp3 accesso 25.7 3.2E+02 0.007 21.2 7.0 43 84-127 82-125 (135)
106 PF09577 Spore_YpjB: Sporulati 25.4 4.3E+02 0.0092 22.5 7.9 25 202-226 198-222 (232)
107 COG5633 Predicted periplasmic 24.9 3.1E+02 0.0068 20.8 9.5 25 2-29 1-25 (123)
108 PF00957 Synaptobrevin: Synapt 24.6 2.5E+02 0.0054 19.5 10.4 34 172-205 31-64 (89)
109 PRK14149 heat shock protein Gr 24.6 4E+02 0.0087 21.9 7.7 52 158-209 43-94 (191)
110 COG4467 Regulator of replicati 24.3 3.1E+02 0.0067 20.5 6.1 43 159-201 9-51 (114)
111 PF08946 Osmo_CC: Osmosensory 24.1 1.9E+02 0.0041 18.0 4.4 27 154-180 8-34 (46)
112 TIGR03142 cytochro_ccmI cytoch 24.0 3E+02 0.0066 20.4 6.4 39 159-197 37-76 (117)
113 PF06156 DUF972: Protein of un 23.9 3.1E+02 0.0066 20.3 6.5 39 158-196 15-53 (107)
114 KOG3091|consensus 23.9 4E+02 0.0086 25.4 7.6 52 159-210 349-400 (508)
115 PRK10884 SH3 domain-containing 23.6 4.3E+02 0.0093 22.0 9.9 19 199-217 168-186 (206)
116 PRK10378 inactive ferrous ion 23.6 3.7E+02 0.008 24.7 7.3 67 48-121 31-103 (375)
117 PF02994 Transposase_22: L1 tr 23.5 2.9E+02 0.0062 25.2 6.7 42 156-197 142-183 (370)
118 PF12669 P12: Virus attachment 23.2 67 0.0014 21.1 1.9 9 224-232 17-25 (58)
119 PRK13664 hypothetical protein; 22.9 2.3E+02 0.0051 18.6 4.4 32 204-235 7-43 (62)
120 PF07125 DUF1378: Protein of u 22.9 1.4E+02 0.003 19.5 3.1 31 200-232 6-36 (59)
121 PF04411 DUF524: Protein of un 22.3 3.6E+02 0.0079 20.6 8.0 32 46-77 33-64 (154)
122 PF10651 DUF2479: Domain of un 22.0 4E+02 0.0087 21.0 8.5 89 86-177 58-157 (170)
123 KOG0285|consensus 22.0 3.6E+02 0.0078 24.8 6.7 51 87-137 373-436 (460)
124 PF10267 Tmemb_cc2: Predicted 21.8 3E+02 0.0066 25.4 6.4 17 199-215 335-351 (395)
125 PRK13169 DNA replication intia 21.7 3.5E+02 0.0076 20.2 6.5 29 158-186 15-43 (110)
126 PF10648 Gmad2: Immunoglobulin 21.7 2.1E+02 0.0046 20.2 4.4 34 67-100 10-46 (88)
127 PHA02665 hypothetical protein; 21.7 61 0.0013 27.3 1.8 29 53-81 25-53 (322)
128 PF01166 TSC22: TSC-22/dip/bun 21.3 2.6E+02 0.0055 18.5 4.8 29 158-186 14-42 (59)
129 TIGR00383 corA magnesium Mg(2+ 21.0 5.5E+02 0.012 22.2 9.3 27 192-218 248-274 (318)
130 PF03422 CBM_6: Carbohydrate b 20.6 3.4E+02 0.0074 19.6 9.4 77 50-127 25-111 (125)
131 PHA02650 hypothetical protein; 20.1 1.4E+02 0.0031 20.9 3.0 34 195-228 41-74 (81)
No 1
>KOG1692|consensus
Probab=100.00 E-value=1.6e-47 Score=304.99 Aligned_cols=187 Identities=27% Similarity=0.490 Sum_probs=175.8
Q ss_pred ccccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEE
Q psy5395 42 LPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVC 121 (237)
Q Consensus 42 L~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~C 121 (237)
|+..+.++.+.+++.+++||+|++..|++++++|+|.+||..+|++.|++|+|+.+++...+++|+|+|+++.+|.|++|
T Consensus 14 L~~~~~~~~is~~ah~eeCf~e~~~~gd~~~vsF~v~~gg~~~vd~~I~gP~~~~i~~~~~~ssgk~tF~a~~~G~Y~fC 93 (201)
T KOG1692|consen 14 LFISAAGYGISLDAHEEECFFENLEEGDKLSVSFEVIDGGFLGVDVEITGPDGKIIHKGKRESSGKYTFTAPKKGTYTFC 93 (201)
T ss_pred HHHHhhheeEEEccchhhhHhhhhccCCEEEEEEEEecCCccceeEEEECCCCchhhhcccccCceEEEEecCCceEEEE
Confidence 45558899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCeEEEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 122 IDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 122 f~N~~s~~~~k~V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
|+|..+...||+|.|+|++++.++.++.+++ ++.+++++.|.+|.+.+..++.||.|+..|+++||.++|+||+|
T Consensus 94 F~N~~s~mtpk~V~F~ihvg~~~~~~d~~~d-----~~~~~L~~~I~eL~~al~~Vk~EQeY~~~Rer~Hr~~nEntn~R 168 (201)
T KOG1692|consen 94 FSNKMSTMTPKTVMFTIHVGHAPQRDDLAKD-----AHQNKLEEMIRELSEALTSVKHEQEYMEARERIHRNTNENTNSR 168 (201)
T ss_pred ecCCCCCCCceEEEEEEEEeeccccchhccc-----ccccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccce
Confidence 9999997779999999999988766654442 56779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcccCCC
Q psy5395 202 VMNWSVIQILVIAATTTVQVYFVRQLFNSKTN 233 (237)
Q Consensus 202 v~~~sii~ivvli~~s~~Qv~~LkrfF~~K~~ 233 (237)
|+|||++|.++||+++++|||||||||+.|+.
T Consensus 169 Vv~wsife~~vLi~~s~~QVyYLkRfFEvkrv 200 (201)
T KOG1692|consen 169 VVLWSIFEALVLIAMSVLQVYYLKRFFEVKRV 200 (201)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHhheeeec
Confidence 99999999999999999999999999999974
No 2
>KOG3287|consensus
Probab=100.00 E-value=2e-41 Score=274.40 Aligned_cols=192 Identities=37% Similarity=0.597 Sum_probs=178.7
Q ss_pred cccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeC-CCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEE
Q psy5395 43 PAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRG-GDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVC 121 (237)
Q Consensus 43 ~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~-~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~C 121 (237)
|+....++++||||+++|||..++.+.++.+.|+|.+| |+.+|++++.+|.|+++.....+.+|.+++...+.|.|++|
T Consensus 30 pa~d~dftv~ipAGk~eCf~Q~v~~~~tle~eyQVi~G~GDl~i~Ftl~~P~G~~lv~~q~k~dg~ht~e~~e~GdY~~C 109 (236)
T KOG3287|consen 30 PADDYDFTVMIPAGKTECFYQPVPQGATLEVEYQVIDGAGDLDIDFTLLNPAGEVLVSDQRKVDGVHTVEVTETGDYQVC 109 (236)
T ss_pred cccccceEEEecCCCceeeeeeccCCeEEEEEEEEEecCCccceeeEEeCCCccEEeecccccCceeEeeccCCcceEEE
Confidence 78899999999999999999999999999999999998 78899999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCeEEEEEEEEE-------eecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5395 122 IDNQFSRNAGKLVNMYLTVV-------RYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNL 194 (237)
Q Consensus 122 f~N~~s~~~~k~V~f~i~v~-------~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~ 194 (237)
|+|++|+++.|.|.|++-+. ....|++..+..+.++.+++++++.+.++..+++.+...|..+|.||.|+|.+
T Consensus 110 fDNsFS~fs~K~Vffeli~~~~g~~~e~~e~w~k~~e~~~~Ld~kl~di~~~i~~i~~nl~k~~~~q~~lRa~EaRDr~L 189 (236)
T KOG3287|consen 110 FDNSFSTFSRKLVFFELILDAHGEFYEGDETWHKYKERTEQLDVKLDDIEDSIGTIKNNLNKMWQYQALLRAREARDRNL 189 (236)
T ss_pred EcCccccccceEEEEEEEeccccchhccchhHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999999443 22346655555667889999999999999999999999999999999999999
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCCC
Q psy5395 195 LEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKTNK 234 (237)
Q Consensus 195 ~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~~~ 234 (237)
.+++..||.|||++|+.+||+++..||++|||+|+.|+..
T Consensus 190 ~esNf~rVN~WS~vq~~vmi~v~~iQVf~lrslFe~~~~~ 229 (236)
T KOG3287|consen 190 QESNFDRVNFWSMVQTLVMILVGIIQVFMLRSLFEVKSKS 229 (236)
T ss_pred HhcccchhhHHHHHHHHHHHHHhhhhhhhhHHHhcCCCCc
Confidence 9999999999999999999999999999999999999743
No 3
>KOG1693|consensus
Probab=100.00 E-value=3.4e-40 Score=264.45 Aligned_cols=187 Identities=21% Similarity=0.398 Sum_probs=169.8
Q ss_pred ceeEEEEEcCCCcceEEEEcCCCCE-EEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEc
Q psy5395 46 AMDYKIHIDPGKEDCFFQYVNPGAT-FYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDN 124 (237)
Q Consensus 46 ~~~l~f~l~~g~~~Cf~e~v~~~~~-i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N 124 (237)
+..++|+||++.++|||+++++++. ++..|.|..||+.||++.|.+|+|++|+...++..+.|.|++...|+|++||+|
T Consensus 21 a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgkvI~~~~kk~~~~~~f~ae~~G~Y~fCFsN 100 (209)
T KOG1693|consen 21 ASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGKVIYSEKKKRYDSFLFKAEGKGEYTFCFSN 100 (209)
T ss_pred cccEEEEcCCcchhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCCEEeeccccccccEEEEEecceEEEEEecC
Confidence 6789999999999999999997765 999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHH
Q psy5395 125 QFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMN 204 (237)
Q Consensus 125 ~~s~~~~k~V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~ 204 (237)
..+.+.+|+|.+++.++++....... +..+...+.++..+..+++.|+.|.+.|.|.|.||.+.+.+++++++||+|
T Consensus 101 ~fstf~~Kiv~~~~q~~~~~~~~~~~---~~~~~~~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn~~tv~st~~Rv~~ 177 (209)
T KOG1693|consen 101 EFSTFSHKIVYMDFQVGEEPPLHPAV---SNRDTALTQMENAIVEIHRALNKIDDTQTYYRLREARNRSTVESTNSRVTW 177 (209)
T ss_pred ccccccceEeeehhhhccccccCccc---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhcccchhhH
Confidence 99999999999999988654332211 111235678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcccCCCCC
Q psy5395 205 WSVIQILVIAATTTVQVYFVRQLFNSKTNKP 235 (237)
Q Consensus 205 ~sii~ivvli~~s~~Qv~~LkrfF~~K~~~~ 235 (237)
||++++++++++++.||..||.||+.|++..
T Consensus 178 ~Sl~e~~~vv~iSi~Qv~ilk~fFt~~r~~~ 208 (209)
T KOG1693|consen 178 WSLLEIIAVVVISIAQVFILKFFFTDRRKRY 208 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 9999999999999999999999999998653
No 4
>KOG1690|consensus
Probab=100.00 E-value=4.8e-39 Score=257.36 Aligned_cols=185 Identities=20% Similarity=0.265 Sum_probs=157.3
Q ss_pred ccccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEe----------CCCcceEEEEeCCCCC--EEecceeeccceEE
Q psy5395 42 LPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLR----------GGDGMAGFAVRNPNGQ--IVHPYEWKKNAEYQ 109 (237)
Q Consensus 42 L~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~----------~~~~~I~v~I~dP~g~--~v~~~~~~~~g~f~ 109 (237)
|+..+.+++|++.+++++||++++|+|+++.|+|.+.- .++..+.+.|.+|.++ +|..++..++|.|+
T Consensus 14 l~~~~~a~yFy~~~~e~KCF~eelpk~tmv~G~yk~qlyd~~~~~y~~~p~~gm~VeV~e~fdnnh~Vl~q~~ss~G~ft 93 (215)
T KOG1690|consen 14 LATQVQALYFYIAGTEKKCFIEELPKGTMVTGNYKAQLYDDQLKGYGSYPNIGMHVEVKETFDNNHVVLSQQYSSEGDFT 93 (215)
T ss_pred HHhhccEEEEEecCCcccchhhhCCCCcEEEeeeeeeeecchhcccccCCCceEEEEeecCCCCceEEEeecCCCCCceE
Confidence 67779999999999999999999999999999999852 1245688999999776 99999999999999
Q ss_pred EeCCCeeeEEEEEEcCCCCC-CC-eE-EEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 110 DTPPHGGYYSVCIDNQFSRN-AG-KL-VNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARS 186 (237)
Q Consensus 110 f~~~~~G~Y~~Cf~N~~s~~-~~-k~-V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~ 186 (237)
|++..+|+|+||+....+.| +. |+ |.++|.++ ++.+.+++. .+..+.++.++..|.+++..|+.||.++|.
T Consensus 94 Fta~~~GeH~IC~~s~s~awf~~aklRvhld~qvG--~~a~l~a~~----ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~ 167 (215)
T KOG1690|consen 94 FTALTPGEHRICIQSNSTAWFNGAKLRVHLDIQVG--DHANLDAQI----KETDKLLEGRVRQLNSRLESIRKEQNLQRE 167 (215)
T ss_pred EEccCCCceEEEEecccchhhccceEEEEEEEeeC--chhhhhhhh----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998665533 22 32 55555554 333322331 235778889999999999999999999999
Q ss_pred HHHhhHHHHHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q psy5395 187 REARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKT 232 (237)
Q Consensus 187 re~~~~~~~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~ 232 (237)
||+++|++.||+|+|++||+++|+++|+++|+||+.|||+||..++
T Consensus 168 RE~~FR~tSES~NsRvm~Wsv~Q~vvL~~tc~wQmrhL~~FFvkqK 213 (215)
T KOG1690|consen 168 REETFRDTSESANSRVMWWSVAQLVVLLVTCIWQMRHLKSFFVKQK 213 (215)
T ss_pred HHHHHHhhhhhhcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999998775
No 5
>KOG1691|consensus
Probab=100.00 E-value=3.7e-37 Score=250.04 Aligned_cols=186 Identities=17% Similarity=0.332 Sum_probs=166.5
Q ss_pred ccccceeEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCCCc---ceEEEEeCCCCCEEecceeeccceEEEeCCCeeeE
Q psy5395 42 LPAVAMDYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGGDG---MAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYY 118 (237)
Q Consensus 42 L~~~~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~---~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y 118 (237)
++..+.++.|+|++++.+|+.|++.+|..+.|.|.+.++... .+++.|+||.|+.+++.++..+|+|+|++.+.|.|
T Consensus 16 ~~~~~~a~~f~v~~~~~kCi~EeI~~n~lv~g~y~i~~~~~~~~~~~~~~Vts~~G~~~~~~env~~gqFaFta~e~~~y 95 (210)
T KOG1691|consen 16 LLPLVHALRFDVPSKTTKCISEEIHENVLVVGDYEIINPNGDHSHKLSVKVTSPYGNNLHSKENVTKGQFAFTAEESGMY 95 (210)
T ss_pred HhhhhheEEEEecCCCCEeehhhhccCeEEEEEEEEecCCCCccceEEEEEEcCCCceeehhhccccceEEEEeccCCcE
Confidence 456789999999999999999999999999999999875433 59999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCC---eEEEEEEEEEe-ecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy5395 119 SVCIDNQFSRNAG---KLVNMYLTVVR-YDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNL 194 (237)
Q Consensus 119 ~~Cf~N~~s~~~~---k~V~f~i~v~~-~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~ 194 (237)
.+||.|......+ ..|.|++..|- +++|++.+|. ++++++|.++++|.+.+..|+++..|+|.||+++|++
T Consensus 96 ~~Cf~~~~~~~~p~~~~~I~ld~k~Gv~akdw~~IAKk-----eklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~ 170 (210)
T KOG1691|consen 96 EACFTADVPGHKPETKRSIDLDWKTGVEAKDWDSIAKK-----EKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNT 170 (210)
T ss_pred EEEEecccCCCCCCcceEEEEEeeccccccchHHHHhh-----hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999994332223 34566665553 4689988874 5899999999999999999999999999999999999
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q psy5395 195 LEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKT 232 (237)
Q Consensus 195 ~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~ 232 (237)
+|+||+||.|+|++-+++++++++||++|||+||++|+
T Consensus 171 nesTNsrv~~fSi~Sl~v~~~va~~QvlyLK~fF~kKK 208 (210)
T KOG1691|consen 171 NESTNSRVAWFSILSLVVLLSVAGWQVLYLKRFFQKKK 208 (210)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999987
No 6
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=100.00 E-value=5.7e-38 Score=254.98 Aligned_cols=177 Identities=29% Similarity=0.536 Sum_probs=5.5
Q ss_pred eEEEEEcCCCcceEEEEcCCCCEEEEEEEEEeCC-CcceEEEEe--CCCCCEEecceee-ccceEEEeCCCeeeEEEEEE
Q psy5395 48 DYKIHIDPGKEDCFFQYVNPGATFYVNFQVLRGG-DGMAGFAVR--NPNGQIVHPYEWK-KNAEYQDTPPHGGYYSVCID 123 (237)
Q Consensus 48 ~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~-~~~I~v~I~--dP~g~~v~~~~~~-~~g~f~f~~~~~G~Y~~Cf~ 123 (237)
|++|+|+||+++||++++++|+.+.+.|++.+++ ..+|++.|+ +|+|++++..... ++|+|+|+++++|+|++||+
T Consensus 1 a~~f~l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~~v~~~i~~~~~~~~~i~~~~~~~~~~~f~f~~~~~G~y~iCf~ 80 (183)
T PF01105_consen 1 ALTFELEPGETECFYEEVPKGTTIRGSYRVTDGGGAYDVDFTIRDPDPNGEVIYSKSDKESEGSFSFTAKESGEYQICFD 80 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEEEECCCCcEEEEEEcCCCcEEEEEEEEeeccccceEEEEEEecccCCceeeeecccccCCcEEEEeccCCCEEEEEE
Confidence 6899999999999999999999999999999887 788999999 5566888888545 55799999999999999999
Q ss_pred cCCCCCCC-eEEEEEEEEEeec-CcchhhhhhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 124 NQFSRNAG-KLVNMYLTVVRYD-QWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 124 N~~s~~~~-k~V~f~i~v~~~~-~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
|+.+.+++ +.|+|+++++.+. +.++.++ ++++++++..+++|.+.++.|.++|.|++.|+++|+++++++++|
T Consensus 81 n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~l~~~l~~i~~~q~~~~~r~~~~~~~~es~~~~ 155 (183)
T PF01105_consen 81 NSSSSFSPSKRVSFDIDVGNENKDYKNVAK-----KEHLDPLEESLEKLESNLKEIKDEQKYLREREERHRQLNESTNSR 155 (183)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCccccEEEEEEEEEeecccchhhhhh-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 99987666 8899999887532 2222232 258999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcc
Q psy5395 202 VMNWSVIQILVIAATTTVQVYFVRQLFN 229 (237)
Q Consensus 202 v~~~sii~ivvli~~s~~Qv~~LkrfF~ 229 (237)
+++|+++++++++++++||+++||+||+
T Consensus 156 i~~~si~~~~vli~~~~~Qv~~lk~~f~ 183 (183)
T PF01105_consen 156 IMWWSIIQIVVLILVSVWQVYYLKKFFK 183 (183)
T ss_dssp ----------------------HHHHHH
T ss_pred EEhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999995
No 7
>PF13897 GOLD_2: Golgi-dynamics membrane-trafficking
Probab=93.88 E-value=0.83 Score=35.39 Aligned_cols=31 Identities=26% Similarity=0.296 Sum_probs=27.0
Q ss_pred EEeCCCeeeEEEEEEcCCCCCCCeEEEEEEE
Q psy5395 109 QDTPPHGGYYSVCIDNQFSRNAGKLVNMYLT 139 (237)
Q Consensus 109 ~f~~~~~G~Y~~Cf~N~~s~~~~k~V~f~i~ 139 (237)
+++.+..|.|-++|+|+.|.+.+|.+.+.|-
T Consensus 104 s~~c~~~GvYvLkFDNSYS~~rsK~l~Y~V~ 134 (136)
T PF13897_consen 104 SHTCPGPGVYVLKFDNSYSWFRSKKLYYRVY 134 (136)
T ss_pred EEECCCCeEEEEEeeCcceeEEeeEEEEEEE
Confidence 6677899999999999999888899877763
No 8
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=93.69 E-value=1.4 Score=31.68 Aligned_cols=62 Identities=18% Similarity=0.319 Sum_probs=42.0
Q ss_pred CCCCEEEEEEEEEeCC-------CcceEEEEeCCCCCEEeccee---eccceEEEe--CC---CeeeEEEEEEcCCC
Q psy5395 66 NPGATFYVNFQVLRGG-------DGMAGFAVRNPNGQIVHPYEW---KKNAEYQDT--PP---HGGYYSVCIDNQFS 127 (237)
Q Consensus 66 ~~~~~i~~~y~v~~~~-------~~~I~v~I~dP~g~~v~~~~~---~~~g~f~f~--~~---~~G~Y~~Cf~N~~s 127 (237)
.+|++|.+.--+.+.+ ...+.+.|+||+|+.+..+.. ...|.+++. .+ ..|.|++=+.....
T Consensus 12 rPGetV~~~~~~~~~~~~~~~~~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~~~~ 88 (99)
T PF01835_consen 12 RPGETVHFRAIVRDLDNDFKPPANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRVKTDDD 88 (99)
T ss_dssp -TTSEEEEEEEEEEECTTCSCESSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEEEETTT
T ss_pred CCCCEEEEEEEEeccccccccccCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEEEEccC
Confidence 3788888877765432 247999999999999998776 245655433 32 47999998887543
No 9
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=93.46 E-value=0.87 Score=32.71 Aligned_cols=46 Identities=26% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCcceEEEEeCCCCCEEecc-eeeccceE--EEeCCCeeeEEEEEEcCC
Q psy5395 81 GDGMAGFAVRNPNGQIVHPY-EWKKNAEY--QDTPPHGGYYSVCIDNQF 126 (237)
Q Consensus 81 ~~~~I~v~I~dP~g~~v~~~-~~~~~g~f--~f~~~~~G~Y~~Cf~N~~ 126 (237)
+..++.+.|.+|+|+.+.-. .+..+|.| +|+....|.|.+.+.-..
T Consensus 30 G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~P~~~G~~~i~V~~~g 78 (93)
T smart00557 30 GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYTPTEPGDYTVTVKFGG 78 (93)
T ss_pred CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEEeCCCEeEEEEEEECC
Confidence 34679999999999655443 34556665 688999999999987553
No 10
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=90.72 E-value=1 Score=30.41 Aligned_cols=61 Identities=23% Similarity=0.396 Sum_probs=40.7
Q ss_pred ceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeec-----cceEEEeCCCeeeEEEEE
Q psy5395 59 DCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKK-----NAEYQDTPPHGGYYSVCI 122 (237)
Q Consensus 59 ~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~-----~g~f~f~~~~~G~Y~~Cf 122 (237)
..|...+++|..+.+. +... ..+.++.+++++|..+......+ .....|+++.+|.|-+=.
T Consensus 3 D~y~f~v~ag~~l~i~--l~~~-~~d~dl~l~~~~g~~~~~~d~~~~~~~~~~~i~~~~~~~GtYyi~V 68 (70)
T PF04151_consen 3 DYYSFTVPAGGTLTID--LSGG-SGDADLYLYDSNGNSLASYDDSSQSGGNDESITFTAPAAGTYYIRV 68 (70)
T ss_dssp EEEEEEESTTEEEEEE--ECET-TSSEEEEEEETTSSSCEECCCCTCETTSEEEEEEEESSSEEEEEEE
T ss_pred EEEEEEEcCCCEEEEE--EcCC-CCCeEEEEEcCCCCchhhheecCCCCCCccEEEEEcCCCEEEEEEE
Confidence 3567778888886655 3333 23677899999987666633222 234568889999998743
No 11
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=84.47 E-value=4.6 Score=28.86 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=30.6
Q ss_pred cceEEEEeCCCCC----EEec-ceeeccceE--EEeCCCeeeEEEEEEcC
Q psy5395 83 GMAGFAVRNPNGQ----IVHP-YEWKKNAEY--QDTPPHGGYYSVCIDNQ 125 (237)
Q Consensus 83 ~~I~v~I~dP~g~----~v~~-~~~~~~g~f--~f~~~~~G~Y~~Cf~N~ 125 (237)
..+.+.|.+|++. .+.- -....+|.| +|+++..|.|++.+.-.
T Consensus 42 ~~~~v~i~~p~~~~~~~~~~~~v~~~~~G~y~v~y~p~~~G~y~i~V~~~ 91 (101)
T PF00630_consen 42 DEFQVTITSPDGKEEPVPVPVEVIDNGDGTYTVSYTPTEPGKYKISVKIN 91 (101)
T ss_dssp SEEEEEEESSSSESS--EEEEEEEEESSSEEEEEEEESSSEEEEEEEEES
T ss_pred ceeEEEEeCCCCCccccccceEEEECCCCEEEEEEEeCccEeEEEEEEEC
Confidence 3577889999987 3332 234566766 57789999999988643
No 12
>PF13860 FlgD_ig: FlgD Ig-like domain; PDB: 3C12_A 3OSV_A.
Probab=83.80 E-value=6.1 Score=27.54 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=24.3
Q ss_pred CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecce
Q psy5395 68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE 101 (237)
Q Consensus 68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~ 101 (237)
+....+.|.+..+ ...+.+.|+|.+|++|.+..
T Consensus 11 ~~~~~~~~~l~~~-a~~v~v~I~d~~G~~V~t~~ 43 (81)
T PF13860_consen 11 GTKGSIEYTLPED-ADNVTVTIYDSNGQVVRTIS 43 (81)
T ss_dssp TCEEEEEEEECSS-CEEEEEEEEETTS-EEEEEE
T ss_pred CEEEEEEEeCCCc-ccEEEEEEEcCCCCEEEEEE
Confidence 3477888887654 34689999999999998753
No 13
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=83.26 E-value=18 Score=29.50 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=35.7
Q ss_pred ceEEEEeCCCCCEEecc-eeeccceEEEeC---CCeeeEEEEEEcCCCCCCCeEEEEEEEE
Q psy5395 84 MAGFAVRNPNGQIVHPY-EWKKNAEYQDTP---PHGGYYSVCIDNQFSRNAGKLVNMYLTV 140 (237)
Q Consensus 84 ~I~v~I~dP~g~~v~~~-~~~~~g~f~f~~---~~~G~Y~~Cf~N~~s~~~~k~V~f~i~v 140 (237)
...+.+.+|+|+.+... .+.......+.. .+.|.+++.+.|..+. ++.+.+.+.-
T Consensus 42 ~p~i~L~~P~G~~~~~~~~d~~~~~~~i~ipg~ae~G~W~y~i~~~~~~--~q~v~vtVtS 100 (179)
T PF09315_consen 42 PPSITLTDPSGTVYTTFTTDSNSKTARIQIPGTAEVGTWTYSITNTSSS--SQTVTVTVTS 100 (179)
T ss_pred CceEEEECCCCCEEeeeEEcccccEEEEECCCCcccccEEEEEecCCCC--cceEEEEEEe
Confidence 45678999999998772 223333334443 4699999999887654 4555555443
No 14
>PF11589 DUF3244: Domain of unknown function (DUF3244); InterPro: IPR021638 This family of proteins with unknown function appear to be restricted to Bacteroidetes. The protein may have an immunoglobulin-like beta-sandwich fold however this cannot be confirmed. ; PDB: 3D33_B 3SD2_A.
Probab=81.89 E-value=5.4 Score=29.37 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=38.9
Q ss_pred CCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeec--cceEEEe--CCCeeeEEEEEEcCCC
Q psy5395 67 PGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKK--NAEYQDT--PPHGGYYSVCIDNQFS 127 (237)
Q Consensus 67 ~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~--~g~f~f~--~~~~G~Y~~Cf~N~~s 127 (237)
.|..+.+.|.. ...++.++|+|.+|+++|+..... ....++. ....|.|.+=+.+...
T Consensus 35 ~~~~l~I~F~~---~~~~vtI~I~d~~G~vVy~~~~~~~~~~~~~I~L~~~~~G~Y~l~i~~~~g 96 (106)
T PF11589_consen 35 DGNNLSIEFES---PIGDVTITIKDSTGNVVYSETVSNSAGQSITIDLNGLPSGEYTLEITNGNG 96 (106)
T ss_dssp ETTEEEEEESS-----SEEEEEEEETT--EEEEEEESCGGTTEEEEE-TTS-SEEEEEEEEECTC
T ss_pred eCCEEEEEEcC---CCCCEEEEEEeCCCCEEEEEEccCCCCcEEEEEeCCCCCccEEEEEEeCCC
Confidence 35677777753 235689999999999999975333 2235555 4579999999999875
No 15
>PF15417 DUF4624: Domain of unknown function (DUF4624)
Probab=78.54 E-value=19 Score=27.09 Aligned_cols=78 Identities=15% Similarity=0.364 Sum_probs=45.7
Q ss_pred CCCcceEEEEcCC-CCEEEEEEEEEeCCCcceEEEEeCCCCC-EEeccee---eccceEEEe---CCCeeeEEEEEEcCC
Q psy5395 55 PGKEDCFFQYVNP-GATFYVNFQVLRGGDGMAGFAVRNPNGQ-IVHPYEW---KKNAEYQDT---PPHGGYYSVCIDNQF 126 (237)
Q Consensus 55 ~g~~~Cf~e~v~~-~~~i~~~y~v~~~~~~~I~v~I~dP~g~-~v~~~~~---~~~g~f~f~---~~~~G~Y~~Cf~N~~ 126 (237)
.|...|..+++.. +..+. |. ++| +.+| +.|+|.+-+ ++++..+ .....|+.. .+..-+|-+||....
T Consensus 36 N~rLFcVs~Die~L~aEv~--f~-mDG-e~~i-VEiKd~~~devLWsn~~~~~V~~dt~tisL~nlqk~kEY~V~ftGtk 110 (132)
T PF15417_consen 36 NGRLFCVSEDIEALDAEVY--FQ-MDG-ESGI-VEIKDRKTDEVLWSNTWNGKVSGDTFTISLNNLQKEKEYVVCFTGTK 110 (132)
T ss_pred cceEEEEecchheeeeEEE--EE-EcC-ccce-EEeccCCccceeeccccccccccceEEEEhhhcccCceEEEEEeccE
Confidence 4677888888863 33322 22 234 4445 788887654 5555432 233445554 356778999998776
Q ss_pred CCCCCeEEEEEEE
Q psy5395 127 SRNAGKLVNMYLT 139 (237)
Q Consensus 127 s~~~~k~V~f~i~ 139 (237)
-. +..|.++|+
T Consensus 111 In--hAvv~vtFe 121 (132)
T PF15417_consen 111 IN--HAVVKVTFE 121 (132)
T ss_pred ee--eEEEEEEec
Confidence 32 455666554
No 16
>KOG1693|consensus
Probab=76.46 E-value=43 Score=27.82 Aligned_cols=163 Identities=10% Similarity=0.097 Sum_probs=88.5
Q ss_pred ccccccccccc-ceeEEEEEcCCCcceEE-EEcCCCCEEEEEEEEEeCCCcceEEEEeCCCC----CEEecceeeccceE
Q psy5395 35 SAPWYENLPAV-AMDYKIHIDPGKEDCFF-QYVNPGATFYVNFQVLRGGDGMAGFAVRNPNG----QIVHPYEWKKNAEY 108 (237)
Q Consensus 35 ~~~~~~~L~~~-~~~l~f~l~~g~~~Cf~-e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g----~~v~~~~~~~~g~f 108 (237)
..|..-.||.. -++++-+++.+...|-+ -.|..|..+.+.|.+..++.. + |+...+ ...+. ....|+|
T Consensus 21 a~elTfeLp~~aKqC~Y~d~~~~~~~~~~~fqV~tGG~fDVD~~I~aPdgk-v---I~~~~kk~~~~~~f~--ae~~G~Y 94 (209)
T KOG1693|consen 21 ASELTFELPDNAKQCFYEDLKKDDDTTSFEFQVQTGGHFDVDYDIEAPDGK-V---IYSEKKKRYDSFLFK--AEGKGEY 94 (209)
T ss_pred cccEEEEcCCcchhheeeecccCCceEEEEEEEEeCCceeeEEEEECCCCC-E---EeeccccccccEEEE--EecceEE
Confidence 34666667776 78999999988886666 455799999999999877533 3 222233 33343 3455666
Q ss_pred EEeCC-Ceee--EE-EEEEcCCCCCCCeEEEEEEEEEeecCcchhhhhhhhhccchHhHHHHHHHHHHHHHHHH--HHHH
Q psy5395 109 QDTPP-HGGY--YS-VCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEIL--QQQY 182 (237)
Q Consensus 109 ~f~~~-~~G~--Y~-~Cf~N~~s~~~~k~V~f~i~v~~~~~~~~~~k~~~~l~~~i~~l~~~i~~l~~~l~~i~--~eq~ 182 (237)
+|=-. +-|. ++ .-+++......+-.- .+. ..+. + ....+..+..|...|+.+.+.....+ .-+.
T Consensus 95 ~fCFsN~fstf~~Kiv~~~~q~~~~~~~~~----~~~-~~~~---~--~~~mena~~~I~~~L~~I~~~q~y~R~RE~rn 164 (209)
T KOG1693|consen 95 TFCFSNEFSTFSHKIVYMDFQVGEEPPLHP----AVS-NRDT---A--LTQMENAIVEIHRALNKIDDTQTYYRLREARN 164 (209)
T ss_pred EEEecCccccccceEeeehhhhccccccCc----ccc-ccch---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65321 1111 11 123333321111000 001 1111 1 11122356777888888888777653 4455
Q ss_pred HHHHHHHhhHHHHHhHHhH--HHHHHHHHHHHH
Q psy5395 183 HARSREARDFNLLEDNNRY--VMNWSVIQILVI 213 (237)
Q Consensus 183 ~~r~re~~~~~~~est~~r--v~~~sii~ivvl 213 (237)
+.+...-++|-..=|.-.- ++..|+.|+.+|
T Consensus 165 ~~tv~st~~Rv~~~Sl~e~~~vv~iSi~Qv~il 197 (209)
T KOG1693|consen 165 RSTVESTNSRVTWWSLLEIIAVVVISIAQVFIL 197 (209)
T ss_pred ccchhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666777766666555 334455555443
No 17
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=76.26 E-value=54 Score=30.00 Aligned_cols=59 Identities=20% Similarity=0.040 Sum_probs=34.5
Q ss_pred CCCcceEEEEeCCCCCEEecceeeccceEEEe---CCCeeeEEEEEEcCCCCCCCeEEEEEE
Q psy5395 80 GGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDT---PPHGGYYSVCIDNQFSRNAGKLVNMYL 138 (237)
Q Consensus 80 ~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~---~~~~G~Y~~Cf~N~~s~~~~k~V~f~i 138 (237)
.+...+.+.+++|+|..........++.-... ..+.|.|++=..--.+..+...+.|.+
T Consensus 239 ~~s~~~~~~~~~P~g~~~~~~~~~~~~~~~~~l~~~~~~G~Y~i~~~~~~Tt~~GRe~~~~l 300 (374)
T TIGR03503 239 PGSLVIHGELVFPNGQIQQFSIELEEPETRVDLPANYEFGKYRVKGTVFGTTITGRELQLTL 300 (374)
T ss_pred cccEEEEEEEECCCCceEEecccCccCceEEeccCcCCCeEEEEEEEEEEecCCCCEEEEEc
Confidence 34456888999999984444334444444443 357899988765444332334444443
No 18
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=72.83 E-value=27 Score=23.76 Aligned_cols=24 Identities=8% Similarity=0.246 Sum_probs=12.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQ 181 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq 181 (237)
+.+..++..++.+.+.+..+....
T Consensus 6 e~l~~ie~~l~~~~~~i~~lE~~~ 29 (71)
T PF10779_consen 6 EKLNRIETKLDNHEERIDKLEKRD 29 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555544443
No 19
>PRK06655 flgD flagellar basal body rod modification protein; Reviewed
Probab=72.08 E-value=14 Score=31.27 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=39.4
Q ss_pred CEEEEEEEEEeCCCcceEEEEeCCCCCEEecce--eeccceEEEeC---------CCeeeEEEEEEcC
Q psy5395 69 ATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE--WKKNAEYQDTP---------PHGGYYSVCIDNQ 125 (237)
Q Consensus 69 ~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~--~~~~g~f~f~~---------~~~G~Y~~Cf~N~ 125 (237)
..+.+.|....+ ...+.+.|+|.+|++|+.-. ..+.|.+.|.- -.+|.|++=+...
T Consensus 113 ~~~~~~~~l~~~-a~~vti~I~D~~G~~Vrt~~lg~~~aG~~~f~WDG~d~~G~~lp~G~Yt~~V~A~ 179 (225)
T PRK06655 113 GTTPFGVELPSA-ADNVTVTITDSAGQVVRTIDLGAQSAGVVSFTWDGTDTDGNALPDGNYTIKASAS 179 (225)
T ss_pred CceEEEEEcCCC-CcEEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeEEEEEEEE
Confidence 356677766543 34689999999999998653 24577777732 3478899988654
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=71.56 E-value=59 Score=31.23 Aligned_cols=75 Identities=16% Similarity=0.183 Sum_probs=40.6
Q ss_pred EEEEcCCCcceEEEEcC----CCCEEEEEEEEEeCC--CcceEEEEeCCCCCEEecceeeccceEEEeC-----CCeeeE
Q psy5395 50 KIHIDPGKEDCFFQYVN----PGATFYVNFQVLRGG--DGMAGFAVRNPNGQIVHPYEWKKNAEYQDTP-----PHGGYY 118 (237)
Q Consensus 50 ~f~l~~g~~~Cf~e~v~----~~~~i~~~y~v~~~~--~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~-----~~~G~Y 118 (237)
.+++|++...|-|--.+ ..-.=.|-|.|.... ++---+.+..|+|..-.+ .......|.+ +++..|
T Consensus 14 ~~Y~P~~~v~C~Ytlt~~~~ps~~DWIGiFKVGw~s~rdY~Tf~Wa~~p~~~~~~s---~~~~~V~F~ayyLPk~~~e~Y 90 (546)
T PF07888_consen 14 KSYIPGTDVECHYTLTPGFHPSSKDWIGIFKVGWSSTRDYYTFVWAPVPENYVEGS---AVNCQVQFQAYYLPKDDDEFY 90 (546)
T ss_pred cccCCCCCeEEEEecCCCCCCCCCCeeEEeecCCCchhheeeEEeeccCccccCCC---ccceEEEECcccCCCCCCCeE
Confidence 46778888888885543 344566777775432 222224455565421111 1112233332 335579
Q ss_pred EEEEEcCCC
Q psy5395 119 SVCIDNQFS 127 (237)
Q Consensus 119 ~~Cf~N~~s 127 (237)
.||..|..+
T Consensus 91 qfcYv~~~g 99 (546)
T PF07888_consen 91 QFCYVDQKG 99 (546)
T ss_pred EEEEECCCc
Confidence 999998865
No 21
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=71.32 E-value=26 Score=22.96 Aligned_cols=26 Identities=12% Similarity=0.367 Sum_probs=11.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 160 VQNFTDSVRTVERNINEILQQQYHAR 185 (237)
Q Consensus 160 i~~l~~~i~~l~~~l~~i~~eq~~~r 185 (237)
|+.|...++.|...+..|..+..-++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr 30 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALR 30 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444443333
No 22
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=70.86 E-value=5.7 Score=26.42 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=35.3
Q ss_pred ceEEEEeCCCCCEEec--ceeeccceEEEeCCCeeeEEEEEEcCCC
Q psy5395 84 MAGFAVRNPNGQIVHP--YEWKKNAEYQDTPPHGGYYSVCIDNQFS 127 (237)
Q Consensus 84 ~I~v~I~dP~g~~v~~--~~~~~~g~f~f~~~~~G~Y~~Cf~N~~s 127 (237)
++.|.+++.++..+.. ..-...|.+.|.--..|.|.+=......
T Consensus 3 Ga~f~L~~~~~~~~~~~~~~Td~~G~~~f~~L~~G~Y~l~E~~aP~ 48 (70)
T PF05738_consen 3 GATFELYDEDGNEVIEVTVTTDENGKYTFKNLPPGTYTLKETKAPD 48 (70)
T ss_dssp TEEEEEEETTSEEEEEEEEEGGTTSEEEEEEEESEEEEEEEEETTT
T ss_pred CeEEEEEECCCCEEEEEEEEECCCCEEEEeecCCeEEEEEEEECCC
Confidence 4678888888887775 4557889999998899999999988544
No 23
>PRK12813 flgD flagellar basal body rod modification protein; Reviewed
Probab=69.62 E-value=16 Score=30.95 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=39.0
Q ss_pred CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccce--EEEeC-------CCeeeEEEEEEcCC
Q psy5395 68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAE--YQDTP-------PHGGYYSVCIDNQF 126 (237)
Q Consensus 68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~--f~f~~-------~~~G~Y~~Cf~N~~ 126 (237)
|..+.+.|.+..+ ...+.+.|+|.+|++|+..+. +.|. |++.- -.+|.|+|=+.-..
T Consensus 110 g~~~~~~~~l~~~-a~~v~v~I~D~~G~vV~t~~~-~~G~~~f~WDG~d~~G~~l~~G~Yt~~V~A~~ 175 (223)
T PRK12813 110 GTPVTISPNPAAD-ADKAELVVRDAAGAEVARETV-PVGAGPVEWAGEDADGNPLPNGAYSFVVESYS 175 (223)
T ss_pred CceeEEEEeccCC-CceEEEEEEcCCCCEEEEEee-CCCceeEEeCCcCCCCCcCCCccEEEEEEEEe
Confidence 4467777777654 346899999999999987643 3444 44432 23689999987653
No 24
>PF10528 PA14_2: GLEYA domain; InterPro: IPR018871 This presumed domain is found in fungal adhesins and is related to the PA14 domain. ; PDB: 4A3X_A.
Probab=68.91 E-value=15 Score=27.64 Aligned_cols=47 Identities=19% Similarity=0.440 Sum_probs=26.0
Q ss_pred cCCCcceEEEEcCCCCEEEEEEEE-EeCCCcceEEEEeCCCCCEEecc
Q psy5395 54 DPGKEDCFFQYVNPGATFYVNFQV-LRGGDGMAGFAVRNPNGQIVHPY 100 (237)
Q Consensus 54 ~~g~~~Cf~e~v~~~~~i~~~y~v-~~~~~~~I~v~I~dP~g~~v~~~ 100 (237)
..+...++...+.+|...=++... ..++...+++.|++|+|..+...
T Consensus 55 ~~~~~~~~tv~L~aG~yyPiRi~~~N~~g~~~~~~~i~~P~G~~~~~~ 102 (113)
T PF10528_consen 55 STGASKSVTVYLTAGTYYPIRIVYANGGGPGSFDFSITDPDGTVHTDD 102 (113)
T ss_dssp SS-SEEEEEEEE-TT-BEEEEEEEEE-SS-EEEEEEEEETT-S--B--
T ss_pred CCCCceEEEEEEECCcEEEEEEEEEcCCCceEEEEEEECCCCcEEecC
Confidence 445667888888888744443333 33455678999999999998875
No 25
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=67.61 E-value=5.9 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=29.9
Q ss_pred ceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEcCC
Q psy5395 84 MAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQF 126 (237)
Q Consensus 84 ~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N~~ 126 (237)
+..+.+.+.++.......-..+|.|.|..-..|.|.+=+.-..
T Consensus 16 ~a~V~l~~~~~~~~~~~~Td~~G~f~~~~l~~g~Y~l~v~~~g 58 (82)
T PF13620_consen 16 GATVTLTDQDGGTVYTTTTDSDGRFSFEGLPPGTYTLRVSAPG 58 (82)
T ss_dssp T-EEEET--TTTECCEEE--TTSEEEEEEE-SEEEEEEEEBTT
T ss_pred CEEEEEEEeeCCCEEEEEECCCceEEEEccCCEeEEEEEEECC
Confidence 5788888888887777667899999999544599999986664
No 26
>PRK05842 flgD flagellar basal body rod modification protein; Reviewed
Probab=67.22 E-value=19 Score=31.82 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=38.9
Q ss_pred CEEEEEEEEEe---CCCcceEEEEeCCCCCEEecceee----ccceEEEeC---------CCeeeEEEEEEcC
Q psy5395 69 ATFYVNFQVLR---GGDGMAGFAVRNPNGQIVHPYEWK----KNAEYQDTP---------PHGGYYSVCIDNQ 125 (237)
Q Consensus 69 ~~i~~~y~v~~---~~~~~I~v~I~dP~g~~v~~~~~~----~~g~f~f~~---------~~~G~Y~~Cf~N~ 125 (237)
..+.+.|.+.. .+...+.+.|+|.+|++|..-... ..|.++|.- -.+|.|+|=....
T Consensus 149 ~~~~~~~~l~~~~~~~a~~v~I~I~Da~G~vVrTi~l~~~~~~aG~~~f~WDG~d~~G~~~p~G~Yt~~V~a~ 221 (295)
T PRK05842 149 NKLSFSLFFDEKIDASKGVPAIQILNENNELVKTIPLKDYNGQKGYINFEWDGLNEKGEKVPKGNYKIKAEYN 221 (295)
T ss_pred CceEEEEeccccccccCceEEEEEEcCCCCEEEEEecCcccCCCcceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 35666766642 233468999999999999875432 347777762 2368999998644
No 27
>PRK12812 flgD flagellar basal body rod modification protein; Reviewed
Probab=66.38 E-value=17 Score=31.43 Aligned_cols=55 Identities=7% Similarity=0.074 Sum_probs=39.1
Q ss_pred CEEEEEEEEEeCCCcceEEEEeCCCCCEEecce--eeccceEEEeCC---------CeeeEEEEEEc
Q psy5395 69 ATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE--WKKNAEYQDTPP---------HGGYYSVCIDN 124 (237)
Q Consensus 69 ~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~--~~~~g~f~f~~~---------~~G~Y~~Cf~N 124 (237)
..+.+.|.+..+ ...+.+.|+|.+|++|..-+ ..+.|.+.|.-. .+|.|+|=+..
T Consensus 128 ~~~~~~~~l~~~-a~~v~v~I~D~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~A 193 (259)
T PRK12812 128 ELIALKLYFPED-SDEGTLEIYDSNNKLVEKIDFKEISQGLFTMEWDGRDNDGVYAGDGEYTIKAVY 193 (259)
T ss_pred ceeEEEEecCCc-CceEEEEEEeCCCCEEEEEecCCCCCcceeEEECCCCCCCCcCCCeeeEEEEEE
Confidence 366677776543 34699999999999998754 345676666643 27999999974
No 28
>KOG0518|consensus
Probab=64.89 E-value=17 Score=37.20 Aligned_cols=61 Identities=15% Similarity=0.207 Sum_probs=42.8
Q ss_pred CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecce-eeccceE--EEeCCCeeeEEEEEEcCCCC
Q psy5395 68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE-WKKNAEY--QDTPPHGGYYSVCIDNQFSR 128 (237)
Q Consensus 68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~-~~~~g~f--~f~~~~~G~Y~~Cf~N~~s~ 128 (237)
|..-+..-.....+..|+.+.+.||.|+..-..- ....+.| .|+..+.|.|++|..+..-.
T Consensus 868 g~~~~l~lk~~~~~~~d~ta~vt~PSG~~~~aei~~~~~~~y~vrFtP~e~G~~tl~V~y~~~~ 931 (1113)
T KOG0518|consen 868 GHTCSLDLKATEASSQDITARVTDPSGRVFEAEIVDLGQGTYQVRFTPKEPGNHTLSVKYKDQH 931 (1113)
T ss_pred cceeeeeeecCCCCccceEEEeeCCCCCccccEEEECCCceEEEEecCCCCCceEEEEEecCcc
Confidence 3444444445555667899999999998655432 2445544 69999999999999988743
No 29
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=62.75 E-value=39 Score=21.85 Aligned_cols=41 Identities=7% Similarity=0.067 Sum_probs=24.8
Q ss_pred ceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEcCC
Q psy5395 84 MAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQF 126 (237)
Q Consensus 84 ~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N~~ 126 (237)
.....+.+.+++-+....... .++|+.-.+|.|.|-+....
T Consensus 9 ~Y~Y~l~g~d~~W~~~~~~~~--~~~~~~L~~G~Y~l~V~a~~ 49 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITLGSYSN--SISYTNLPPGKYTLEVRAKD 49 (66)
T ss_dssp EEEEEEETTESSEEEESSTS---EEEEES--SEEEEEEEEEEE
T ss_pred EEEEEEECCCCeEEECCCCcE--EEEEEeCCCEEEEEEEEEEC
Confidence 345555666666554432111 88999999999999887544
No 30
>KOG3202|consensus
Probab=61.33 E-value=78 Score=27.03 Aligned_cols=67 Identities=10% Similarity=0.120 Sum_probs=37.4
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHH-----------------HHHHHHHHHHHHHHhH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYV-----------------MNWSVIQILVIAATTT 218 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv-----------------~~~sii~ivvli~~s~ 218 (237)
-|+.++.|+..+.++...-..+..|..-+-.--+.+-.-++.|.+|+ -.|+++.+++.+++-+
T Consensus 150 QDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lv 229 (235)
T KOG3202|consen 150 QDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLV 229 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 34677888888887777666655544443333333333333333332 2366666666666666
Q ss_pred HHHH
Q psy5395 219 VQVY 222 (237)
Q Consensus 219 ~Qv~ 222 (237)
++++
T Consensus 230 v~i~ 233 (235)
T KOG3202|consen 230 VIIF 233 (235)
T ss_pred HHHh
Confidence 6665
No 31
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=59.65 E-value=57 Score=22.85 Aligned_cols=19 Identities=21% Similarity=0.393 Sum_probs=12.1
Q ss_pred cceEEEEeCCCCCEEecce
Q psy5395 83 GMAGFAVRNPNGQIVHPYE 101 (237)
Q Consensus 83 ~~I~v~I~dP~g~~v~~~~ 101 (237)
...++.|+|++|+.|+.+.
T Consensus 24 q~~D~~v~d~~g~~vwrwS 42 (82)
T PF12690_consen 24 QRYDFVVKDKEGKEVWRWS 42 (82)
T ss_dssp --EEEEEE-TT--EEEETT
T ss_pred CEEEEEEECCCCCEEEEec
Confidence 3578889999999999874
No 32
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=59.47 E-value=59 Score=25.01 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=39.8
Q ss_pred EEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCee-eEEEEEEcCCC
Q psy5395 70 TFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGG-YYSVCIDNQFS 127 (237)
Q Consensus 70 ~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G-~Y~~Cf~N~~s 127 (237)
.+...+++.+.+..-+.+..+|..|+.+.... ..+++..|+.|..- .|++.+-|...
T Consensus 57 ~l~~~~~~~P~~svylki~F~dr~~e~i~~~i-~k~~~~~F~yP~~aysY~I~LinaG~ 114 (128)
T PF15432_consen 57 QLKFNIDVVPENSVYLKIIFFDRQGEEIEEQI-IKNDSFEFTYPEEAYSYTISLINAGC 114 (128)
T ss_pred EEEEEEEEccCCeEEEEEEEEccCCCEeeEEE-EecCceEEeCCCCceEEEEEEeeCCC
Confidence 34445555555555677778899998888764 45555788866544 69999999875
No 33
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=57.41 E-value=27 Score=25.21 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred EEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEE
Q psy5395 63 QYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSV 120 (237)
Q Consensus 63 e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~ 120 (237)
..+++|+.+.+.+.-.+.. .-++.+.+ ...-..-...+...++|++.+.|+|.+
T Consensus 37 i~v~~G~~v~l~~~N~~~~--~h~~~i~~--~~~~~~l~~g~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 37 ITVKAGQPVTLTFTNNDSR--PHEFVIPD--LGISKVLPPGETATVTFTPLKPGEYEF 90 (104)
T ss_dssp EEEETTCEEEEEEEE-SSS---EEEEEGG--GTEEEEE-TT-EEEEEEEE-S-EEEEE
T ss_pred EEEcCCCeEEEEEEECCCC--cEEEEECC--CceEEEECCCCEEEEEEcCCCCEEEEE
Confidence 4567888888776544332 23444433 221111111234567788899999886
No 34
>PRK12634 flgD flagellar basal body rod modification protein; Reviewed
Probab=56.63 E-value=90 Score=26.32 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=33.4
Q ss_pred CCcceEEEEeCCCCCEEecce--eeccceEEEeCC---------CeeeEEEEEEcC
Q psy5395 81 GDGMAGFAVRNPNGQIVHPYE--WKKNAEYQDTPP---------HGGYYSVCIDNQ 125 (237)
Q Consensus 81 ~~~~I~v~I~dP~g~~v~~~~--~~~~g~f~f~~~---------~~G~Y~~Cf~N~ 125 (237)
....+.+.|+|.+|++|+..+ ..+.|.+.|.-. .+|.|+|-..-.
T Consensus 120 ~a~~v~i~I~d~~G~~V~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Yt~~v~a~ 175 (221)
T PRK12634 120 SAGFVNFEITDANGAFVKQISVPASAAGEVSFAWDGTDANGNRMAAGKYGVTATQT 175 (221)
T ss_pred cCCeEEEEEEcCCCCEEEEEecCCcCCCceeEEECCCCCCCCcCCCeeeEEEEEEE
Confidence 345689999999999998754 356677777642 269999999643
No 35
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=56.02 E-value=53 Score=21.19 Aligned_cols=45 Identities=9% Similarity=0.132 Sum_probs=30.3
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYV 202 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv 202 (237)
+.++.|+..+..|......|..+..-+..--.+-...++.+..++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 48 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENL 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHH
Confidence 357778888888887777777776666665555555555555554
No 36
>PRK14155 heat shock protein GrpE; Provisional
Probab=55.02 E-value=78 Score=26.48 Aligned_cols=55 Identities=9% Similarity=0.132 Sum_probs=39.6
Q ss_pred hhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 155 DLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 155 ~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
++...++.++.++..+.+.+.....+..-+|.|.++.+.........=+.-.++.
T Consensus 17 ~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLp 71 (208)
T PRK14155 17 DAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLG 71 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445678888888888888888888888888888888876665555444444433
No 37
>PRK00022 lolB outer membrane lipoprotein LolB; Provisional
Probab=52.99 E-value=1.2e+02 Score=24.86 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=18.6
Q ss_pred CCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEec
Q psy5395 66 NPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHP 99 (237)
Q Consensus 66 ~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~ 99 (237)
..+..+++++.....+ ...++.+.+|-|..+..
T Consensus 58 ~~~~~~sa~~~W~q~~-~~~~l~l~~plG~~~~~ 90 (202)
T PRK00022 58 SPQQRVSARFDWQQRG-DRYRLLLTSPLGSTELE 90 (202)
T ss_pred CCCceEEEEEEEEEcC-CeeEEEEEccCCccEEE
Confidence 4566777776655433 23455666776654444
No 38
>PRK12633 flgD flagellar basal body rod modification protein; Provisional
Probab=52.93 E-value=37 Score=28.82 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=38.1
Q ss_pred EEEEEEEEEeCCCcceEEEEeCCCCCEEecce--eeccceEEEeCC---------CeeeEEEEEEcC
Q psy5395 70 TFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE--WKKNAEYQDTPP---------HGGYYSVCIDNQ 125 (237)
Q Consensus 70 ~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~--~~~~g~f~f~~~---------~~G~Y~~Cf~N~ 125 (237)
...+.|.+..+ ...+.+.|+|.+|++|+.-+ ..+.|.+.|+-. .+|.|+|=+.-.
T Consensus 117 ~~~~~~~l~~~-a~~v~v~I~D~~G~vV~t~~lg~~~aG~~~f~WDG~d~~G~~~~~G~Y~~~V~a~ 182 (230)
T PRK12633 117 ATPFGIDLQGD-ATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQWDGNNDGGQPLADGKYSITVSAS 182 (230)
T ss_pred ceeEEEecCCc-CcEEEEEEEeCCCCEEEEEecCCCCCCceeEEECCCCCCCCcCCCcceEEEEEEE
Confidence 44555665433 34699999999999998753 346677766631 468899999753
No 39
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=52.63 E-value=97 Score=30.61 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=36.9
Q ss_pred CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEcCC
Q psy5395 68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQF 126 (237)
Q Consensus 68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N~~ 126 (237)
|+.+.+.--+.+|...-..+.|+. +|..+....-.....+.|++...|.|++=++-.+
T Consensus 401 G~~i~i~v~a~gg~~~lY~f~ik~-ng~~ve~~~Y~~~~~~~f~P~~~G~Y~IeV~vKd 458 (667)
T PRK14081 401 GEEIKIRVIAEGGTNLRYSFIIKK-DGKEEEKIDYGKNNWVNFIPEEKGNYELEVRVKD 458 (667)
T ss_pred CCeEEEEEEecCCCeEEEEEEEEE-CCEEEEEeecccccEEEEEECCCeeEEEEEEEec
Confidence 334444433333333334455544 6666666655677889999999999998887664
No 40
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=51.04 E-value=97 Score=22.89 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYV 202 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv 202 (237)
++|+.+.+.++...+.++.+..+++-.-.+-+.--.++.+++.|+
T Consensus 53 eqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 53 EQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777788888888888766666666666666666664
No 41
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=50.72 E-value=68 Score=20.92 Aligned_cols=27 Identities=11% Similarity=0.332 Sum_probs=15.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 160 VQNFTDSVRTVERNINEILQQQYHARS 186 (237)
Q Consensus 160 i~~l~~~i~~l~~~l~~i~~eq~~~r~ 186 (237)
++.+|..+.++...+..++.+..-.+.
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~ 28 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISE 28 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555544443
No 42
>PF08842 Mfa2: Fimbrillin-A associated anchor proteins Mfa1 and Mfa2; InterPro: IPR014941 This family of proteins may be lipoproteins principally from bacilli. They are between 300 and 400 residues. Many Bacteroides-like bacterial species, including Porphyromonas gingivalis, the causal agent of periodontal infection, carry at least two types of fimbriae, namely FimA and Mfa1 fimbriae, following the names of their major subunit proteins []. Normally, FimA fimbriae are long filaments that are easily detached from cells, whereas Mfa1 fimbriae are short filaments that are tightly bound to cells; however, in the absence of Mfa2 protein, the Mfa1 fimbriae are also very long and are not attached. Mfa2 and Mfa1 are associated with each other in whole P. gingivalis cells to the extent that Mfa2 is located on the cell surface and probably associated with Mfa1 fimbriae in such a way that it anchors the Mfa1 fimbriae to the cell surface and regulates Mfa1 filament length [].; PDB: 3PAY_C 3GF8_A.
Probab=50.04 E-value=32 Score=29.04 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=31.0
Q ss_pred CCCCEEEEEEEEEeCC-------CcceEEEEeCCCCCEEecceeec----cceEEE--eCCCeeeEEEEEEcC
Q psy5395 66 NPGATFYVNFQVLRGG-------DGMAGFAVRNPNGQIVHPYEWKK----NAEYQD--TPPHGGYYSVCIDNQ 125 (237)
Q Consensus 66 ~~~~~i~~~y~v~~~~-------~~~I~v~I~dP~g~~v~~~~~~~----~g~f~f--~~~~~G~Y~~Cf~N~ 125 (237)
+.+-.+.+.|.-..+. -..+++.|+|.+|+.+....... .+.|.. .....|.|+++.-..
T Consensus 5 ~~~~~l~f~y~~~~~~~~~~~~~v~~v~lyvFd~~g~~v~~~~~~~~~~~~~~y~~~~~~l~~G~Y~~va~~n 77 (283)
T PF08842_consen 5 PGGLTLKFSYDYNMGNADAFEDEVKRVDLYVFDEDGKLVKQRTIDSEELEGGGYTMFLLDLPPGTYTFVAWGN 77 (283)
T ss_dssp ---EEEEEE---STT-S--HHHH--EEEEEEE-TTSBEEEEEEEECGGCCTTTEEE-CCT--SEEEEEEEEES
T ss_pred CceEEEEEEEeCCccccccccceEeEEEEEEEeCCCeEEEEEEcccccccCCceEEeeccCCCCcEEEEEEEC
Confidence 3455555555443111 14699999999999766653221 244554 345688999888653
No 43
>PRK14154 heat shock protein GrpE; Provisional
Probab=50.00 E-value=1.1e+02 Score=25.51 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=39.4
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQI 210 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~i 210 (237)
++..++.++.++..+.+.+..+..+..-+|.|.++.+.........-+.-.++.+
T Consensus 57 l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpV 111 (208)
T PRK14154 57 LEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPV 111 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4456778888888888888888888888888888887777666655444444433
No 44
>PRK14147 heat shock protein GrpE; Provisional
Probab=49.96 E-value=1.1e+02 Score=24.64 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=38.3
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
++..++.++.++..+.+.+.....+..-+|.|..+.+.........-+.-.++.
T Consensus 23 l~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLp 76 (172)
T PRK14147 23 LKAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLP 76 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445677888888888888888888888888888887777666555544444443
No 45
>PRK14140 heat shock protein GrpE; Provisional
Probab=49.36 E-value=1.3e+02 Score=24.77 Aligned_cols=56 Identities=5% Similarity=0.108 Sum_probs=38.5
Q ss_pred hhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 154 EDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 154 ~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
++++..++.++..+..+.+.+.....+..-+|.|..+.+.........-+.-.++.
T Consensus 40 ~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLp 95 (191)
T PRK14140 40 DEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLP 95 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677788888888888888888888788888887776665555444444433
No 46
>PRK14163 heat shock protein GrpE; Provisional
Probab=49.05 E-value=1.1e+02 Score=25.64 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=39.3
Q ss_pred hhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 155 DLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 155 ~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
.++..++.++..+..+.+.+...+.+..-+|.|..+.+.........-+.-.++.
T Consensus 44 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLp 98 (214)
T PRK14163 44 GLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLP 98 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677888888888888888888888888888888877766555544444433
No 47
>PRK14139 heat shock protein GrpE; Provisional
Probab=46.33 E-value=1.4e+02 Score=24.48 Aligned_cols=54 Identities=9% Similarity=0.063 Sum_probs=39.2
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
++..++.++.++..+.+.+.....+..-+|.|..+.+.........-+.-.++.
T Consensus 37 l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLp 90 (185)
T PRK14139 37 LEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLP 90 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445678888888888888888888888888888888777766655544444443
No 48
>PRK09619 flgD flagellar basal body rod modification protein; Reviewed
Probab=46.31 E-value=58 Score=27.40 Aligned_cols=56 Identities=9% Similarity=0.013 Sum_probs=37.9
Q ss_pred CEEEEEEEEEeCCCcceEEEEeCCCCCEEecce--eeccceEEEeC------CCeeeEEEEEEcCC
Q psy5395 69 ATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYE--WKKNAEYQDTP------PHGGYYSVCIDNQF 126 (237)
Q Consensus 69 ~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~--~~~~g~f~f~~------~~~G~Y~~Cf~N~~ 126 (237)
....+.|.+..+ ...+.+.|+|.+|++ .... ....|.+.|+- -.+|.|++=+....
T Consensus 110 ~~~~~~~~L~~~-a~~v~v~I~D~~G~v-~t~~l~~~~aG~~~f~WDG~~~~lp~G~Y~~~V~a~~ 173 (218)
T PRK09619 110 DPVAGRLTLKHP-APTLTLHITDILGQE-KKIDLGKQPAGPVNFTLDPAALGLQPGQYQLSVVSGS 173 (218)
T ss_pred CeeEEEEecCCc-CcEEEEEEEeCCCCE-EEEecCCcCCCceeEEECCCCCCCCCceeEEEEEEeC
Confidence 456677776543 346899999999997 4332 23567666663 24789999997554
No 49
>PRK14143 heat shock protein GrpE; Provisional
Probab=45.98 E-value=1.5e+02 Score=25.39 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=36.2
Q ss_pred hhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHH
Q psy5395 154 EDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVI 208 (237)
Q Consensus 154 ~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii 208 (237)
+.++..++.++.++..+.+++..+..+..-+|.|..+.+.........-+.-.++
T Consensus 70 ~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lL 124 (238)
T PRK14143 70 AQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEIL 124 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344567777888888888888888888777777777766655544443333333
No 50
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=44.79 E-value=1.6e+02 Score=23.36 Aligned_cols=56 Identities=9% Similarity=0.114 Sum_probs=43.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVI 213 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ivvl 213 (237)
..++.+...-..+....+.++..-.-+-..+.+.....++..+++.+|.-++.+.=
T Consensus 28 ~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr 83 (157)
T PF04136_consen 28 DQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITR 83 (157)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHH
Confidence 35666666666777777777777777778888888999999999999998887653
No 51
>PF14977 FAM194: FAM194 protein
Probab=44.61 E-value=1.9e+02 Score=24.23 Aligned_cols=44 Identities=14% Similarity=0.272 Sum_probs=24.0
Q ss_pred cceEEEEcCCCCEEEEEEEEEeCC-----CcceEEE-------EeCCCCCEEeccee
Q psy5395 58 EDCFFQYVNPGATFYVNFQVLRGG-----DGMAGFA-------VRNPNGQIVHPYEW 102 (237)
Q Consensus 58 ~~Cf~e~v~~~~~i~~~y~v~~~~-----~~~I~v~-------I~dP~g~~v~~~~~ 102 (237)
.-|++|+.+.++ +.+.|...+.+ ...+.+. +.|++|.++..|.+
T Consensus 48 ~~~v~eD~~~~~-ilA~Fd~~G~g~~y~~~g~~~l~l~~~gG~~~D~~G~~~k~W~W 103 (208)
T PF14977_consen 48 TYIVYEDSPENT-ILALFDSSGHGTCYHPNGNIWLVLNQEGGQYFDQKGNRVKKWNW 103 (208)
T ss_pred EEEEEecCCCCc-eEEEEcCCCCEEEEcCCCCEEEEEECCCCEEEcCCCCEEEEEec
Confidence 355667777666 66666644211 1223332 24567777777665
No 52
>PRK14161 heat shock protein GrpE; Provisional
Probab=44.20 E-value=1.7e+02 Score=23.78 Aligned_cols=53 Identities=8% Similarity=0.104 Sum_probs=37.6
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVI 208 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii 208 (237)
.++.++.++.++..+.+.+.....+..-+|.|.++.+.........-+.-.++
T Consensus 24 ~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LL 76 (178)
T PRK14161 24 ANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELL 76 (178)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33567788888888888888888888888888887777666555444443443
No 53
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=43.85 E-value=32 Score=28.78 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhHH----------HHHHHHHhcccCCCCCC
Q psy5395 198 NNRYVMNWSVIQILVIAATTTV----------QVYFVRQLFNSKTNKPR 236 (237)
Q Consensus 198 t~~rv~~~sii~ivvli~~s~~----------Qv~~LkrfF~~K~~~~~ 236 (237)
++...+.-.+|-|.||+++|.+ +|-||||--...+.+||
T Consensus 125 ~~K~amLIClIIIAVLfLICT~LfLSTVVLANKVS~LKrskQ~gKRqpR 173 (227)
T PF05399_consen 125 NNKMAMLICLIIIAVLFLICTLLFLSTVVLANKVSSLKRSKQVGKRQPR 173 (227)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 3555666666666666665543 78899998776666666
No 54
>PRK15396 murein lipoprotein; Provisional
Probab=43.84 E-value=1.1e+02 Score=21.40 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=12.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 160 VQNFTDSVRTVERNINEILQQQYHAR 185 (237)
Q Consensus 160 i~~l~~~i~~l~~~l~~i~~eq~~~r 185 (237)
++.|...++.|...+..+..+..-.+
T Consensus 27 vd~LssqV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 27 IDQLSSDVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444
No 55
>PRK14151 heat shock protein GrpE; Provisional
Probab=43.12 E-value=1.7e+02 Score=23.76 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=36.0
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSV 207 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~si 207 (237)
+++.++.++.++..+.+.+.....+..-+|.|.++.+.........=+.-.+
T Consensus 25 l~~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~L 76 (176)
T PRK14151 25 LTARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDL 76 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888777787877777666555444333333
No 56
>PRK14145 heat shock protein GrpE; Provisional
Probab=42.70 E-value=2e+02 Score=23.89 Aligned_cols=54 Identities=7% Similarity=0.043 Sum_probs=36.0
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
+++.++.++..+..+.+.+.....+..-+|.|..+.+.........-+.-.++-
T Consensus 50 l~~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLp 103 (196)
T PRK14145 50 LKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLP 103 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567777777777777777777777777777777776665555544444443
No 57
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=42.43 E-value=1.4e+02 Score=22.07 Aligned_cols=59 Identities=22% Similarity=0.351 Sum_probs=28.7
Q ss_pred CCCCEEEEEEEEEeC---CCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEcC
Q psy5395 66 NPGATFYVNFQVLRG---GDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQ 125 (237)
Q Consensus 66 ~~~~~i~~~y~v~~~---~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N~ 125 (237)
..|+.+.+.+.+... ....+.+.|++.+|..++.......+ ..+....+|.|++++.=.
T Consensus 32 ~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t~~~~-~~~~~~~~g~~~~~~~i~ 93 (142)
T PF14524_consen 32 ESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNTYDSG-FPIPLSEGGTYEVTFTIP 93 (142)
T ss_dssp ETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEHHHHT---EEE-TT-EEEEEEEEE
T ss_pred eCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECccccC-ccccccCCCEEEEEEEEc
Confidence 345555555555432 22458899999999988864322222 223322255555555433
No 58
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=41.98 E-value=1.2e+02 Score=25.08 Aligned_cols=61 Identities=13% Similarity=0.217 Sum_probs=29.6
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh------HHhHHHHHHHHHHHHHHHHhHH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLED------NNRYVMNWSVIQILVIAATTTV 219 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~es------t~~rv~~~sii~ivvli~~s~~ 219 (237)
+...-+.+++.+.+.+..+..+-.-++++.++.....++ -..-..|+..+.++++|++++.
T Consensus 102 Tw~~W~~~i~~~~~~i~~ll~~a~~qqe~n~~~l~~Ld~w~~l~~wfdit~W~~~Iki~i~iv~~iI 168 (204)
T PF00517_consen 102 TWQQWEKEISNYTGNIYNLLEEAQNQQEKNEQDLLKLDSWTNLWSWFDITKWLWYIKIFIMIVIGII 168 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHCHHHHHHHHHH---------
T ss_pred hHHHHHHHhcccHHHHHHHHHHHHhchhhhhhhhcCCcHHhhhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666665555555555555555555 3344456666666666665554
No 59
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=41.65 E-value=2.2e+02 Score=24.21 Aligned_cols=24 Identities=13% Similarity=0.423 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc
Q psy5395 204 NWSVIQILVIAATTTVQVYFVRQLF 228 (237)
Q Consensus 204 ~~sii~ivvli~~s~~Qv~~LkrfF 228 (237)
||..+-+ +++++.++-++.+=|+|
T Consensus 228 ~~~~~~i-~~v~~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 228 CWTWLMI-FVVIIVFIMMVLFIRIF 251 (251)
T ss_pred HHHHHHH-HHHHHHHHHHHHHheeC
Confidence 5555533 34444555555554443
No 60
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.55 E-value=1.3e+02 Score=21.48 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=21.3
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYV 202 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv 202 (237)
++++|...++.|...+..+..+.+-.+.--..-.+-.+..|.|+
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555554444443333333334444543
No 61
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=40.90 E-value=75 Score=19.64 Aligned_cols=28 Identities=0% Similarity=-0.140 Sum_probs=17.4
Q ss_pred hHHHHHhHHhHHHHHHHHHHHHHHHHhH
Q psy5395 191 DFNLLEDNNRYVMNWSVIQILVIAATTT 218 (237)
Q Consensus 191 ~~~~~est~~rv~~~sii~ivvli~~s~ 218 (237)
|.++.+.--.-..|.+++-+++++.+++
T Consensus 14 he~Ty~gFi~~~k~~~~~~~~~li~lai 41 (44)
T PF07835_consen 14 HEKTYDGFIKLTKWGTIAIAAILIFLAI 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555566777777777776664
No 62
>PRK14162 heat shock protein GrpE; Provisional
Probab=40.79 E-value=2e+02 Score=23.78 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=31.6
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
++..++.++..+..+.+.+..+..+..-+|.|.++.+.........
T Consensus 44 l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~ 89 (194)
T PRK14162 44 LEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQ 89 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445677777777777777777777777777777776665554433
No 63
>PRK14158 heat shock protein GrpE; Provisional
Probab=40.24 E-value=2e+02 Score=23.76 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=36.3
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
+++.++.++.++..+.+.+.....+..-+|.|.++.+.........-+.-.++.
T Consensus 45 le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLp 98 (194)
T PRK14158 45 LEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILP 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444566777777777777777777777777787777777666555544444443
No 64
>PRK14148 heat shock protein GrpE; Provisional
Probab=40.22 E-value=2.1e+02 Score=23.68 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=29.6
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
+++.++.++.++..+.+.+.....+..-+|.|..+.+.........
T Consensus 45 l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~ 90 (195)
T PRK14148 45 AKDTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIE 90 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666677777777777777766777777666665554444
No 65
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=40.08 E-value=1.5e+02 Score=21.65 Aligned_cols=60 Identities=17% Similarity=0.283 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q psy5395 163 FTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLF 228 (237)
Q Consensus 163 l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF 228 (237)
.+.-.++++..+..|..| |+-.+.....++++-.-+..|-+.-+..+++.-+ +..||.+|
T Consensus 37 qe~v~~kld~tlD~i~re----Re~dee~k~~n~Knir~~KmwilGlvgTi~gsli--ia~lr~~f 96 (98)
T PF11166_consen 37 QELVNQKLDRTLDEINRE----REEDEENKKKNDKNIRDIKMWILGLVGTIFGSLI--IALLRTIF 96 (98)
T ss_pred HHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHh
Confidence 333344444555554443 4444445555555555577777776666654433 34556555
No 66
>PRK06798 fliD flagellar capping protein; Validated
Probab=38.29 E-value=1.9e+02 Score=27.08 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=31.1
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSKT 232 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~ 232 (237)
..+.++.+++++++++..+.....-.+.|-.+....+|.+-.++. -|.-+|..+|..|+
T Consensus 380 r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~ln---------------sQ~s~l~~~~~~~~ 438 (440)
T PRK06798 380 RSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALD---------------SQLKTIKAMTKQKS 438 (440)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhcccc
Confidence 445666666666666666655544444444444444444444322 45566666665553
No 67
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=37.45 E-value=4.3e+02 Score=26.28 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=41.0
Q ss_pred CCEEEEEEEEEeCCCcceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEcCCCCC-----CCeEEEEEEE
Q psy5395 68 GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRN-----AGKLVNMYLT 139 (237)
Q Consensus 68 ~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N~~s~~-----~~k~V~f~i~ 139 (237)
|+.+.+.-.+.+|...--.+.|. |..+....-.....|+|++...|.|.+=+.-.+... ..+.++|.+.
T Consensus 305 g~~I~ika~a~GG~~llYrf~I~---G~~~e~~~Y~~~n~~~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~ 378 (667)
T PRK14081 305 DTDIELKAVAEGGKELLYRFIIK---GKESEDSGYIRNNIYTWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIE 378 (667)
T ss_pred CceEEEEEEecCCCceEEEEEEC---CcEEeeccccccceEEEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEc
Confidence 34444443343333333445553 444444444566789999999999999998876431 2355666554
No 68
>KOG2861|consensus
Probab=37.28 E-value=77 Score=29.26 Aligned_cols=54 Identities=17% Similarity=0.063 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHHHHHHHhHHHHH
Q psy5395 163 FTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVY 222 (237)
Q Consensus 163 l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ivvli~~s~~Qv~ 222 (237)
|..++.-|+.+++.+.+..+.++ ..+++....++-|+-|+-|.+-++..++|++
T Consensus 338 I~qRv~vLN~kl~~i~~~~~~l~------e~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~ 391 (399)
T KOG2861|consen 338 IGQRVNVLNYKLKVIEDLLDILQ------ENLNERHSERLEWIIIILIAFEVAIEIYQIV 391 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHH------HHhhhccccceehhhHHHHHHHHHHHHHHHH
Confidence 44556677777777777766666 3456677788999999999999999999876
No 69
>KOG0518|consensus
Probab=36.86 E-value=1e+02 Score=31.97 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=37.9
Q ss_pred CEEEEEEEEEeCCCcceEEEEeCCCCCEEecc-eeec---cceEEEeCCCeeeEEEEEEcC
Q psy5395 69 ATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPY-EWKK---NAEYQDTPPHGGYYSVCIDNQ 125 (237)
Q Consensus 69 ~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~-~~~~---~g~f~f~~~~~G~Y~~Cf~N~ 125 (237)
..+.+.|.+.+.+...+.+.|.||+|+....- .+.. ...++|.....|.|.+=+.=.
T Consensus 376 ~~~d~~fD~~Dageg~levqV~gp~Gk~~~~~V~d~~~~~~h~vsY~pd~~G~y~i~v~~~ 436 (1113)
T KOG0518|consen 376 VEVDFTFDEGDAGEGLLEVQVVGPEGKEKEVVVRDNGRGGIHIVTYVPDCPGRYLIVVFYG 436 (1113)
T ss_pred ccceeeEEccccccceEEEEEECCCCCceeeEEEecCCCceEEEEEcCCCCCceEEEEEEC
Confidence 34555666666566668999999999844321 1222 335677789999999887533
No 70
>PRK02710 plastocyanin; Provisional
Probab=35.67 E-value=1.8e+02 Score=21.57 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=31.6
Q ss_pred cceeEEEEEcCCC-cceEE---EEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEecc-eeeccceEEEeCCCeeeEE
Q psy5395 45 VAMDYKIHIDPGK-EDCFF---QYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPY-EWKKNAEYQDTPPHGGYYS 119 (237)
Q Consensus 45 ~~~~l~f~l~~g~-~~Cf~---e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~-~~~~~g~f~f~~~~~G~Y~ 119 (237)
.+...++.+.... .-.|. ..+++|+.|.. ...+....++ .+.+.++ .-+.. ...+...++++....|.|.
T Consensus 27 ~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~~--~N~~~~~H~v--~~~~~~~-~~~~~~~~~pg~t~~~tF~~~G~y~ 101 (119)
T PRK02710 27 SAETVEVKMGSDAGMLAFEPSTLTIKAGDTVKW--VNNKLAPHNA--VFDGAKE-LSHKDLAFAPGESWEETFSEAGTYT 101 (119)
T ss_pred ccceEEEEEccCCCeeEEeCCEEEEcCCCEEEE--EECCCCCceE--EecCCcc-ccccccccCCCCEEEEEecCCEEEE
Confidence 3455555554332 33444 35678887654 3322222333 3322211 11111 1233334555555588876
Q ss_pred E
Q psy5395 120 V 120 (237)
Q Consensus 120 ~ 120 (237)
+
T Consensus 102 y 102 (119)
T PRK02710 102 Y 102 (119)
T ss_pred E
Confidence 4
No 71
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=35.48 E-value=64 Score=26.08 Aligned_cols=34 Identities=9% Similarity=-0.011 Sum_probs=28.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhHHHHHHHHHhcccC
Q psy5395 198 NNRYVMNWSVIQILVIAATTTVQVYFVRQLFNSK 231 (237)
Q Consensus 198 t~~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K 231 (237)
.+-|..++..+-++++++++++|++.+-+--..+
T Consensus 27 I~P~~~~~~~~a~i~l~ilai~q~~~~~~~~~~~ 60 (182)
T PF09323_consen 27 IHPRYIPLLYFAAILLLILAIVQLWRWFRPKRRK 60 (182)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 5778999999999999999999999877655543
No 72
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=34.96 E-value=2.2e+02 Score=22.22 Aligned_cols=48 Identities=8% Similarity=0.148 Sum_probs=32.3
Q ss_pred hhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 154 EDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 154 ~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
+.++..+..++.++..+.+.+.....+..-.+.|..+...........
T Consensus 14 ~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~ 61 (165)
T PF01025_consen 14 EELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALE 61 (165)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888888888888888877777666666666655544443333
No 73
>PRK14153 heat shock protein GrpE; Provisional
Probab=34.75 E-value=2.6e+02 Score=23.08 Aligned_cols=46 Identities=9% Similarity=0.125 Sum_probs=33.1
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
++..++.++.++..+.+.+.....+..-+|.|..+.+.........
T Consensus 38 ~~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~ 83 (194)
T PRK14153 38 ADSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLE 83 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888888888888888877777777776665554444
No 74
>PRK14141 heat shock protein GrpE; Provisional
Probab=34.57 E-value=2.6e+02 Score=23.43 Aligned_cols=53 Identities=8% Similarity=0.093 Sum_probs=36.7
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQI 210 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~i 210 (237)
+.++.++.++..+.+.+.....+..-+|.|.++.+.........=+.-.++.+
T Consensus 38 ~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpV 90 (209)
T PRK14141 38 DPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSV 90 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46777888888888888888888877787777777666655544444444433
No 75
>KOG3878|consensus
Probab=33.54 E-value=2.3e+02 Score=25.63 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=23.9
Q ss_pred EeCCCeeeEEEEEEcCCCCCCCeEEEEEE
Q psy5395 110 DTPPHGGYYSVCIDNQFSRNAGKLVNMYL 138 (237)
Q Consensus 110 f~~~~~G~Y~~Cf~N~~s~~~~k~V~f~i 138 (237)
..-++.|.|-+=|+|+.+-|.+|+++..+
T Consensus 437 H~YPGrGvYLLKFDNSYSlWRsKtlYYRV 465 (469)
T KOG3878|consen 437 HSYPGRGVYLLKFDNSYSLWRSKTLYYRV 465 (469)
T ss_pred ccCCCCceEEEEecchhhhhcccceEEEE
Confidence 33477899999999999988899986654
No 76
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=33.20 E-value=1.7e+02 Score=20.41 Aligned_cols=48 Identities=19% Similarity=0.302 Sum_probs=25.3
Q ss_pred ceeEEEEEcC---CCcceEEEEcCCCCEEEEEEEEEeCCCcceEEEEeCCCC
Q psy5395 46 AMDYKIHIDP---GKEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNG 94 (237)
Q Consensus 46 ~~~l~f~l~~---g~~~Cf~e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g 94 (237)
..++.|.|.+ +........+++|+.+...+.+... ..--++.|..|+|
T Consensus 31 ~~~~~~~v~~~~y~~~~~~~~~v~ag~~~~~~w~l~~s-~gwYDl~v~~~~~ 81 (89)
T PF05506_consen 31 SAAVTFTVYDNAYGGGGPWTYTVAAGQTVSLTWPLAAS-GGWYDLTVTGPNG 81 (89)
T ss_pred CCcEEEEEEeCCcCCCCCEEEEECCCCEEEEEEeecCC-CCcEEEEEEcCCC
Confidence 3445555544 2244566666667666666665221 1223456666666
No 77
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=33.06 E-value=1.1e+02 Score=26.38 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=32.3
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLED 197 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~es 197 (237)
+..+++.++.+|.+|...+.....+..-++.|+...+.-++.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788888888888888888888888777777776655554
No 78
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=32.70 E-value=1.6e+02 Score=21.70 Aligned_cols=45 Identities=7% Similarity=0.063 Sum_probs=24.7
Q ss_pred cchHhHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHHHhHHhHH
Q psy5395 158 VSVQNFTDSVRTVERNINEI--LQQQYHARSREARDFNLLEDNNRYV 202 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i--~~eq~~~r~re~~~~~~~est~~rv 202 (237)
+.++..+.++..++..+.++ +++..-++.+-.+.+..+..++.++
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34455566666666666665 4555555555555555555555444
No 79
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=32.65 E-value=1.6e+02 Score=19.88 Aligned_cols=19 Identities=5% Similarity=0.270 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5395 163 FTDSVRTVERNINEILQQQ 181 (237)
Q Consensus 163 l~~~i~~l~~~l~~i~~eq 181 (237)
+.+.+.+++..++.+....
T Consensus 4 i~e~l~~ie~~l~~~~~~i 22 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERI 22 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333
No 80
>cd03455 SAV4209 SAV4209 is a Streptomyces avermitilis protein with a hot dog fold that is similar to those of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. The alpha- and gamma-proteobacterial members of this CD have, in addition to a hot dog fold, an N-terminal extension.
Probab=31.88 E-value=1.9e+02 Score=21.19 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=27.9
Q ss_pred EEcCCCCEEEEEEEEEeCCC---cceEEEEeCCCCCEEecc
Q psy5395 63 QYVNPGATFYVNFQVLRGGD---GMAGFAVRNPNGQIVHPY 100 (237)
Q Consensus 63 e~v~~~~~i~~~y~v~~~~~---~~I~v~I~dP~g~~v~~~ 100 (237)
-.+..|+++++.-+|.+... ..+++.+.|++|+.+.+.
T Consensus 78 ~pv~~Gdtl~~~~~v~~~~~~~~v~~~~~~~nq~G~~v~~g 118 (123)
T cd03455 78 APLYAGDTLRFGGRVTAKRDDEVVTVELWARNSEGDHVMAG 118 (123)
T ss_pred ccccCCCEEEEEEEEEeeccCcEEEEEEEEEcCCCCEEEeE
Confidence 34568999999999875322 247788889999887653
No 81
>PRK13211 N-acetylglucosamine-binding protein A; Reviewed
Probab=31.83 E-value=3.9e+02 Score=25.35 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=39.7
Q ss_pred CEEEEEEEEEeCCCcceEEEEeCCCCCEEeccee-eccceEEEe----CCCeeeEEEEEEcCC
Q psy5395 69 ATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW-KKNAEYQDT----PPHGGYYSVCIDNQF 126 (237)
Q Consensus 69 ~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~-~~~g~f~f~----~~~~G~Y~~Cf~N~~ 126 (237)
..+.+.|.+...++..|.++|+|.+|+.+..... ...+...++ -.+.|.|++=..-..
T Consensus 327 G~~~i~ftv~a~g~~~vta~V~d~~g~~~~~~~~~v~d~s~~vtL~Ls~~~AG~y~Lvv~~t~ 389 (478)
T PRK13211 327 GAATLDFTVTATGDMNVEATVYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKP 389 (478)
T ss_pred CcEEEEEEEEeccceEEEEEEEcCCCCeeeeeeEEecCCceeEEEecccCCCceEEEEEEEEe
Confidence 3555666666666778999999999998887642 222333333 347999999998554
No 82
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=31.56 E-value=64 Score=28.81 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHHHHHHHhHHHHH
Q psy5395 162 NFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATTTVQVY 222 (237)
Q Consensus 162 ~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ivvli~~s~~Qv~ 222 (237)
++..++.-|+.+++.|.+..+... .+++++..+++-|+-|+-|++-++++.++++
T Consensus 270 dI~~RvnvLN~Rl~vi~d~l~il~------e~ln~~~s~~lEWivIiLI~~eVllsl~~i~ 324 (331)
T COG1723 270 DINPRVNVLNRRLEVISDLLDILN------EQLNHSHSTRLEWIVIILIGLEVLLSLYNII 324 (331)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHH------HHhhhcccceeEEEehhHHHHHHHHHHHHHH
Confidence 345566667777777666555444 3556677889999999999999999998775
No 83
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=31.29 E-value=2e+02 Score=20.57 Aligned_cols=54 Identities=13% Similarity=0.306 Sum_probs=30.8
Q ss_pred hhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHHH
Q psy5395 154 EDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILV 212 (237)
Q Consensus 154 ~~l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ivv 212 (237)
+++++.+...+..+......++.+.+..+++...+ --+-|++-+...++++.++
T Consensus 4 e~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~e-----RK~RtHRLi~rGa~lEsi~ 57 (86)
T PF12958_consen 4 EELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKE-----RKERTHRLIERGAILESIF 57 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhHHHHHHh
Confidence 33445566667777777777777776666665211 1123445555566666554
No 84
>PRK14157 heat shock protein GrpE; Provisional
Probab=31.11 E-value=3.1e+02 Score=23.27 Aligned_cols=52 Identities=4% Similarity=0.031 Sum_probs=36.7
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
..++.++.++..+.+.+.....+..-+|.|..+.+.........-+.-.++.
T Consensus 84 ~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLp 135 (227)
T PRK14157 84 TPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLP 135 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677788888888888888888888888888887776665554433333333
No 85
>PRK14144 heat shock protein GrpE; Provisional
Probab=31.08 E-value=3.1e+02 Score=22.78 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=34.9
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHH
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVI 208 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii 208 (237)
+++.++.++.++..+.+.+.....+..-+|.|.++.+.........-+.-.++
T Consensus 50 l~~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LL 102 (199)
T PRK14144 50 LEEQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALL 102 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456777778888888777777777777777777776665544443333333
No 86
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=30.64 E-value=1.6e+02 Score=22.94 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=11.7
Q ss_pred cceEEEeCCCeeeEE
Q psy5395 105 NAEYQDTPPHGGYYS 119 (237)
Q Consensus 105 ~g~f~f~~~~~G~Y~ 119 (237)
...++|++...|.|.
T Consensus 101 t~TitF~adKpG~Y~ 115 (135)
T TIGR03096 101 TKTISFKADKAGAFT 115 (135)
T ss_pred eEEEEEECCCCEEEE
Confidence 345788889999988
No 87
>PRK14159 heat shock protein GrpE; Provisional
Probab=30.32 E-value=3e+02 Score=22.36 Aligned_cols=50 Identities=4% Similarity=-0.044 Sum_probs=34.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSV 207 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~si 207 (237)
+.++.++..+..+.+.+.....+..-+|.|.++.+.........=+.-.+
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~L 79 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDL 79 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888877787877777766654444333333
No 88
>KOG3385|consensus
Probab=30.01 E-value=1.8e+02 Score=22.05 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=20.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREA 189 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~ 189 (237)
+.++.+.+++..|.+.--+|-+|.+++..--+
T Consensus 36 e~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld 67 (118)
T KOG3385|consen 36 EAAESLQQKVKALKSLSLDIGDEVRTQNKLLD 67 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 45677778887777777666666555543333
No 89
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=29.73 E-value=3e+02 Score=22.18 Aligned_cols=47 Identities=11% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHHH
Q psy5395 165 DSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQIL 211 (237)
Q Consensus 165 ~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~iv 211 (237)
++...+...+..+..+..-+..+..+-....+...+|++|.+++-++
T Consensus 57 ~~~~~l~~~l~~~~~el~~le~~k~~id~~A~~~~~~~~w~gl~~l~ 103 (180)
T PF04678_consen 57 SRERQLRKRLEELRQELAPLEKIKQEIDEKAEKRARRLLWGGLALLV 103 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666667777776666666666666667777777776654333
No 90
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.67 E-value=1.7e+02 Score=19.33 Aligned_cols=16 Identities=0% Similarity=0.154 Sum_probs=8.2
Q ss_pred hHHhHHHHHHHHHHHH
Q psy5395 197 DNNRYVMNWSVIQILV 212 (237)
Q Consensus 197 st~~rv~~~sii~ivv 212 (237)
..+.+.++|+++-+++
T Consensus 35 ~~~~~~i~~~~~i~~l 50 (59)
T PF09889_consen 35 MRKTQYIFFGIFILFL 50 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455556665554433
No 91
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=29.61 E-value=92 Score=22.90 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=21.8
Q ss_pred CCCeeeEEEEEEcCCCCCCCeEEEEEEEEE
Q psy5395 112 PPHGGYYSVCIDNQFSRNAGKLVNMYLTVV 141 (237)
Q Consensus 112 ~~~~G~Y~~Cf~N~~s~~~~k~V~f~i~v~ 141 (237)
..+.|.|.+=..|++. ...+.|++.+.
T Consensus 74 ~~E~G~YTf~a~N~~~---~~s~tF~l~v~ 100 (101)
T cd05860 74 GTEGGTYTFLVSNSDA---SASVTFNVYVN 100 (101)
T ss_pred hhhCcEEEEEEECCCC---eEEEEEEEEEe
Confidence 4689999999999986 36788888763
No 92
>PRK14160 heat shock protein GrpE; Provisional
Probab=29.23 E-value=3.4e+02 Score=22.72 Aligned_cols=43 Identities=7% Similarity=0.154 Sum_probs=26.0
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Q psy5395 157 NVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNN 199 (237)
Q Consensus 157 ~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~ 199 (237)
++.++.++..+..+.+.+.....+-.-+|.|..+.+.......
T Consensus 67 ~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a 109 (211)
T PRK14160 67 KEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDA 109 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666666665554433
No 93
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=28.76 E-value=3.1e+02 Score=23.11 Aligned_cols=27 Identities=0% Similarity=0.084 Sum_probs=16.8
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHAR 185 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r 185 (237)
.++.|+.+|.+++..++.++....-.+
T Consensus 16 ~L~rle~qi~q~~~~~~~~qs~l~~~~ 42 (251)
T COG5415 16 DLSRLESQIHQLDVALKKSQSILSQWQ 42 (251)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777766655444333
No 94
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=28.52 E-value=1.5e+02 Score=20.08 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=29.3
Q ss_pred ceEEEEeCCCCCEEecceeeccceEEEeCCCeeeEEEEEEcCC
Q psy5395 84 MAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQF 126 (237)
Q Consensus 84 ~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~~G~Y~~Cf~N~~ 126 (237)
+.=+.|+|.+|+.+++...++...+++ .....+.+=+-|..
T Consensus 8 ~sWv~V~d~dG~~~~~~~l~~G~~~~~--~~~~~~~i~iGna~ 48 (77)
T PF13464_consen 8 DSWVEVTDADGKVLFSGTLKAGETKTF--EGKEPFRIRIGNAG 48 (77)
T ss_pred CeEEEEEeCCCcEeeeeeeCCCcEEEE--eCCCCEEEEEeCCC
Confidence 456788999999999877666666677 44455666666664
No 95
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.23 E-value=3.4e+02 Score=22.30 Aligned_cols=50 Identities=6% Similarity=0.031 Sum_probs=37.4
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSV 207 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~si 207 (237)
..+..++.++..+.+....+..+..-+|.|..+.++........-+.--+
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dl 92 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDL 92 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777888888888889999999988888888888777655544333333
No 96
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=27.99 E-value=22 Score=24.46 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=11.6
Q ss_pred chhhHHHHHHhhhhh
Q psy5395 4 NWCFFCLSLVFSLKY 18 (237)
Q Consensus 4 ~~~~~~~~~~~~~~~ 18 (237)
..|.-|+||||--+.
T Consensus 38 E~Cp~CtsLvf~gK~ 52 (82)
T PF05528_consen 38 EPCPACTSLVFRGKT 52 (82)
T ss_pred ccCcchhhhhccCcc
Confidence 368899999996553
No 97
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.90 E-value=3.7e+02 Score=22.67 Aligned_cols=22 Identities=0% Similarity=0.175 Sum_probs=10.2
Q ss_pred chHhHHHHHHHHHHHHHHHHHH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQ 180 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~e 180 (237)
+|.+++..+++++..+..++..
T Consensus 23 qi~q~~~~~~~~qs~l~~~~~r 44 (251)
T COG5415 23 QIHQLDVALKKSQSILSQWQSR 44 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 98
>PRK14146 heat shock protein GrpE; Provisional
Probab=27.84 E-value=3.7e+02 Score=22.59 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=34.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVI 208 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii 208 (237)
..++.++..+..+.+.+.....+..-+|.|..+.+.........-+.-.++
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lL 111 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFL 111 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777778888887777777777777777777666554443333333
No 99
>PRK14164 heat shock protein GrpE; Provisional
Probab=27.78 E-value=3.7e+02 Score=22.64 Aligned_cols=51 Identities=6% Similarity=0.136 Sum_probs=37.5
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
.+..++.++..+.+.+..+..+..-+|.|.++.+.........-+.-.++.
T Consensus 78 ~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLp 128 (218)
T PRK14164 78 EASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLP 128 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788888888888888888888888888888777666555544444444
No 100
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=27.61 E-value=1.6e+02 Score=26.34 Aligned_cols=43 Identities=16% Similarity=0.292 Sum_probs=34.2
Q ss_pred ccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Q psy5395 157 NVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNN 199 (237)
Q Consensus 157 ~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~ 199 (237)
+.++++++.+|..+...|..+.....|-+++-.-.+.++.+.+
T Consensus 181 qkk~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 181 QKKIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3467788888888888888888888888888888777776554
No 101
>PF10670 DUF4198: Domain of unknown function (DUF4198)
Probab=27.60 E-value=2.4e+02 Score=22.62 Aligned_cols=20 Identities=20% Similarity=0.228 Sum_probs=15.6
Q ss_pred eccceEEEeCCCeeeEEEEE
Q psy5395 103 KKNAEYQDTPPHGGYYSVCI 122 (237)
Q Consensus 103 ~~~g~f~f~~~~~G~Y~~Cf 122 (237)
..+|.++|+.+..|.|-+=.
T Consensus 190 D~~G~~~~~~~~~G~wli~a 209 (215)
T PF10670_consen 190 DANGRATFTLPRPGLWLIRA 209 (215)
T ss_pred CCCCEEEEecCCCEEEEEEE
Confidence 56888899888888886543
No 102
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=27.38 E-value=1.5e+02 Score=23.09 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcccCCCCCC
Q psy5395 204 NWSVIQILVIAATTTVQVYFVRQLFNSKTNKPR 236 (237)
Q Consensus 204 ~~sii~ivvli~~s~~Qv~~LkrfF~~K~~~~~ 236 (237)
..-.++++.-+++.++.++.+-.||++|+.-||
T Consensus 54 ~~~~~~~~~~~~~~~~~l~~~~lffkr~~~~P~ 86 (149)
T PF10754_consen 54 ALWYFEVAINIAMWLFTLWLLYLFFKRKRRFPK 86 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchhHH
Confidence 455677777778888899999999999987665
No 103
>PRK14156 heat shock protein GrpE; Provisional
Probab=26.77 E-value=3.5e+02 Score=21.99 Aligned_cols=51 Identities=6% Similarity=0.057 Sum_probs=35.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVI 208 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii 208 (237)
..++.++.++..+.+.+.....+..-+|.|..+.+.........=+.-.++
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL 84 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356778888888888888888888777777777777665554443333333
No 104
>PF03554 Herpes_UL73: UL73 viral envelope glycoprotein ; InterPro: IPR005211 This entry represents a conserved region found in a number of viral proteins: BLRF1, U46, 53, and UL73, collectively known as glycoprotein N. These UL73-like envelope glycoproteins, which associate in a high molecular mass complex with their counterpart protein gM, induce neutralizing antibody responses in the host. These glycoproteins are highly polymorphic, particularly in the N-terminal region [].; GO: 0019031 viral envelope
Probab=26.57 E-value=1.1e+02 Score=21.57 Aligned_cols=28 Identities=11% Similarity=0.451 Sum_probs=22.7
Q ss_pred hHHhHHHHHHHHHHHHHHHHhHHHHHHH
Q psy5395 197 DNNRYVMNWSVIQILVIAATTTVQVYFV 224 (237)
Q Consensus 197 st~~rv~~~sii~ivvli~~s~~Qv~~L 224 (237)
+..+-..+|.++..+++++.++.=+.|+
T Consensus 44 sl~SFsSIW~iiN~~il~~A~~vyLry~ 71 (82)
T PF03554_consen 44 SLSSFSSIWAIINVVILLCAFCVYLRYL 71 (82)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999999999999988776664
No 105
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=25.67 E-value=3.2e+02 Score=21.22 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=25.8
Q ss_pred ceEEEEeCCCCCEEecceeeccceEEEeCCC-eeeEEEEEEcCCC
Q psy5395 84 MAGFAVRNPNGQIVHPYEWKKNAEYQDTPPH-GGYYSVCIDNQFS 127 (237)
Q Consensus 84 ~I~v~I~dP~g~~v~~~~~~~~g~f~f~~~~-~G~Y~~Cf~N~~s 127 (237)
-+.+...|..|+.+-... ..+.+..|..|. .=.|++++-|...
T Consensus 82 ~~ki~F~dr~~~ei~~~i-~~~~~~~F~yP~~aysY~i~LinaG~ 125 (135)
T TIGR03711 82 YLKITFFDRQGEEIGTEI-EKDDSIIFIYPDEAYFYKISLISAGS 125 (135)
T ss_pred EEEEEEeccCCceeceEE-EecCceEEECCCcceEEEEEeeeCCC
Confidence 344555566666555543 233445666554 4469999999865
No 106
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=25.38 E-value=4.3e+02 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Q psy5395 202 VMNWSVIQILVIAATTTVQVYFVRQ 226 (237)
Q Consensus 202 v~~~sii~ivvli~~s~~Qv~~Lkr 226 (237)
-++|.++-++.+|+++..=+-+=|-
T Consensus 198 sl~Wv~l~iG~iIi~tLtYvGwRKY 222 (232)
T PF09577_consen 198 SLIWVMLSIGGIIIATLTYVGWRKY 222 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888887776665443
No 107
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=24.91 E-value=3.1e+02 Score=20.83 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=18.3
Q ss_pred ccchhhHHHHHHhhhhhhccccchhhhc
Q psy5395 2 LRNWCFFCLSLVFSLKYVLSGSMQAVTA 29 (237)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (237)
.|.||+..+ -+++++.|.|-|.+-.
T Consensus 1 Mrk~~~~~l---~~~lLvGCsS~~~i~~ 25 (123)
T COG5633 1 MRKLCLLSL---ALLLLVGCSSHQEILV 25 (123)
T ss_pred CceehHHHH---HHHHhhccCCCCCccc
Confidence 478988333 3568899999998854
No 108
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=24.58 E-value=2.5e+02 Score=19.51 Aligned_cols=34 Identities=6% Similarity=-0.042 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHH
Q psy5395 172 RNINEILQQQYHARSREARDFNLLEDNNRYVMNW 205 (237)
Q Consensus 172 ~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~ 205 (237)
+.++++.+...-+......++......+++..|-
T Consensus 31 e~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~ 64 (89)
T PF00957_consen 31 EKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWR 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445555555555666666666666666665443
No 109
>PRK14149 heat shock protein GrpE; Provisional
Probab=24.57 E-value=4e+02 Score=21.95 Aligned_cols=52 Identities=8% Similarity=0.082 Sum_probs=35.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQ 209 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~ 209 (237)
+.++.++..+..+.+.+.....+..-+|.|..+-+.........-+.-.++.
T Consensus 43 ~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLp 94 (191)
T PRK14149 43 EIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLP 94 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577788888888888888888887777777777766665544433333333
No 110
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=24.29 E-value=3.1e+02 Score=20.52 Aligned_cols=43 Identities=9% Similarity=-0.023 Sum_probs=23.4
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~r 201 (237)
+++.++..|..+...+..|++....+-+-....+--+++...|
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 4566666666666666666666555544333333333444444
No 111
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=24.09 E-value=1.9e+02 Score=18.05 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=15.8
Q ss_pred hhhccchHhHHHHHHHHHHHHHHHHHH
Q psy5395 154 EDLNVSVQNFTDSVRTVERNINEILQQ 180 (237)
Q Consensus 154 ~~l~~~i~~l~~~i~~l~~~l~~i~~e 180 (237)
+-++++-+.++..+..++..+.++...
T Consensus 8 elLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 8 ELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 345677888888888888888776543
No 112
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=24.04 E-value=3e+02 Score=20.37 Aligned_cols=39 Identities=23% Similarity=0.417 Sum_probs=24.9
Q ss_pred chHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhHHHHHh
Q psy5395 159 SVQNFTDSVRTVERNINE-ILQQQYHARSREARDFNLLED 197 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~-i~~eq~~~r~re~~~~~~~es 197 (237)
++.-..+++..|++.... ..++..|.+.|.+-.|.+.++
T Consensus 37 n~~iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~rrLL~d 76 (117)
T TIGR03142 37 NLAVYRDRLAELERDLAEGLLDEAEAEAARAELQRRLLAD 76 (117)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHC
Confidence 355566677777666554 555667777777777766644
No 113
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.92 E-value=3.1e+02 Score=20.34 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=21.6
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLE 196 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~e 196 (237)
+++..+.+.+..|...+..+..|-..++.--+..|..+.
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~ 53 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLE 53 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655555544444444443
No 114
>KOG3091|consensus
Probab=23.91 E-value=4e+02 Score=25.39 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=40.1
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhHHHHHHHHHH
Q psy5395 159 SVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQI 210 (237)
Q Consensus 159 ~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~est~~rv~~~sii~i 210 (237)
.++.-...|+.+.+.+.+++.++.-.-.|-+++++...+...|++...+.+-
T Consensus 349 ~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqe 400 (508)
T KOG3091|consen 349 EVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQE 400 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888888877777778888888888999999877665543
No 115
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.64 E-value=4.3e+02 Score=21.96 Aligned_cols=19 Identities=0% Similarity=-0.347 Sum_probs=9.5
Q ss_pred HhHHHHHHHHHHHHHHHHh
Q psy5395 199 NRYVMNWSVIQILVIAATT 217 (237)
Q Consensus 199 ~~rv~~~sii~ivvli~~s 217 (237)
+.+.-||...-.++++++-
T Consensus 168 ~~~~~wf~~Gg~v~~~Gll 186 (206)
T PRK10884 168 TIIMQWFMYGGGVAGIGLL 186 (206)
T ss_pred HHHHHHHHHchHHHHHHHH
Confidence 3345555555555554443
No 116
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=23.58 E-value=3.7e+02 Score=24.67 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=37.0
Q ss_pred eEEEEEcCCCcceEE--EEcCCCCEEEEEEEEEeCCCcceEEEEeCCCCCEEeccee---eccceEEEeCCCeeeEEE-E
Q psy5395 48 DYKIHIDPGKEDCFF--QYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEW---KKNAEYQDTPPHGGYYSV-C 121 (237)
Q Consensus 48 ~l~f~l~~g~~~Cf~--e~v~~~~~i~~~y~v~~~~~~~I~v~I~dP~g~~v~~~~~---~~~g~f~f~~~~~G~Y~~-C 121 (237)
.+.+++.++ .|-- ..++.|. ..|.|.+.+.....+.+.+. +.++-..+. ..++.++++. .+|.|.+ |
T Consensus 31 ~v~Vti~d~--~c~p~~~tVpAG~---~~f~V~N~~~~~~Efe~~~~-~~vv~e~EnIaPG~s~~l~~~L-~pGtY~~~C 103 (375)
T PRK10378 31 QVKVTVNDK--QCEPMTLTVNAGK---TQFIIQNHSQKALEWEILKG-VMVVEERENIAPGFSQKMTANL-QPGEYDMTC 103 (375)
T ss_pred ceEEEEECC--ccccCceeeCCCC---EEEEEEeCCCCcceEEeecc-ccccccccccCCCCceEEEEec-CCceEEeec
Confidence 466666655 4544 4456774 56666665555566766642 223332222 1223455444 6999998 9
No 117
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=23.48 E-value=2.9e+02 Score=25.17 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=25.1
Q ss_pred hccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy5395 156 LNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLED 197 (237)
Q Consensus 156 l~~~i~~l~~~i~~l~~~l~~i~~eq~~~r~re~~~~~~~es 197 (237)
+...++.+++.|..+++.+..+.+.......+-....+.+++
T Consensus 142 l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~D 183 (370)
T PF02994_consen 142 LNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDD 183 (370)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 334677777778877777777776655555444444444443
No 118
>PF12669 P12: Virus attachment protein p12 family
Probab=23.18 E-value=67 Score=21.05 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=6.0
Q ss_pred HHHhcccCC
Q psy5395 224 VRQLFNSKT 232 (237)
Q Consensus 224 LkrfF~~K~ 232 (237)
+++++++++
T Consensus 17 ~r~~~k~~K 25 (58)
T PF12669_consen 17 IRKFIKDKK 25 (58)
T ss_pred HHHHHHHhh
Confidence 488886654
No 119
>PRK13664 hypothetical protein; Provisional
Probab=22.89 E-value=2.3e+02 Score=18.62 Aligned_cols=32 Identities=9% Similarity=0.340 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHH-----HHhcccCCCCC
Q psy5395 204 NWSVIQILVIAATTTVQVYFV-----RQLFNSKTNKP 235 (237)
Q Consensus 204 ~~sii~ivvli~~s~~Qv~~L-----krfF~~K~~~~ 235 (237)
+|=++-+++++++-.--+--| |+|+.+|+..|
T Consensus 7 yWWilill~lvG~i~N~iK~l~RvD~Kkfl~nkp~LP 43 (62)
T PRK13664 7 YWWILVLVFLVGVLLNVIKDLKRVDHKKFLANKPELP 43 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCCCCC
Confidence 444555566666655555555 56888887443
No 120
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=22.89 E-value=1.4e+02 Score=19.50 Aligned_cols=31 Identities=10% Similarity=0.252 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q psy5395 200 RYVMNWSVIQILVIAATTTVQVYFVRQLFNSKT 232 (237)
Q Consensus 200 ~rv~~~sii~ivvli~~s~~Qv~~LkrfF~~K~ 232 (237)
.-++||+-+-..+.++.++|- .+|.||++|-
T Consensus 6 ~~lLyFctvVcaLYLvsGGyk--~IRnY~r~Ki 36 (59)
T PF07125_consen 6 TILLYFCTVVCALYLVSGGYK--VIRNYFRRKI 36 (59)
T ss_pred HHHHHHHHHHHHHHHHhccHH--HHHHHHHHHH
Confidence 346677777777777777664 4688887763
No 121
>PF04411 DUF524: Protein of unknown function (DUF524); InterPro: IPR007505 This domain has been identified as a member of the PD-(D/E)XK nuclease superfamily through transitive meta profile searches []. The domain has two additional beta-strands inserted to the core fold after the first core alpha-helix. It has been speculated that it could function as s methylation-dependent restriction [].
Probab=22.29 E-value=3.6e+02 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.337 Sum_probs=15.7
Q ss_pred ceeEEEEEcCCCcceEEEEcCCCCEEEEEEEE
Q psy5395 46 AMDYKIHIDPGKEDCFFQYVNPGATFYVNFQV 77 (237)
Q Consensus 46 ~~~l~f~l~~g~~~Cf~e~v~~~~~i~~~y~v 77 (237)
...+.+.++.|.+-=+.-..+.+..+++.|+-
T Consensus 33 ~~~~~~~l~~~~~~~~~~~~~~~~~i~l~Yn~ 64 (154)
T PF04411_consen 33 EDGLRVSLRKGRESKFIFFNRDGERIELYYNP 64 (154)
T ss_pred CCCeeEeeccCCceeEEEEcCCCcEEEEEECC
Confidence 34456666655551111112555666666664
No 122
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=22.00 E-value=4e+02 Score=21.03 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=37.5
Q ss_pred EEEEeCCCC-CEEecc---eeeccceEEEeCC-----CeeeEE--EEEEcCCCCCCCeEEEEEEEEEeecCcchhhhhhh
Q psy5395 86 GFAVRNPNG-QIVHPY---EWKKNAEYQDTPP-----HGGYYS--VCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIE 154 (237)
Q Consensus 86 ~v~I~dP~g-~~v~~~---~~~~~g~f~f~~~-----~~G~Y~--~Cf~N~~s~~~~k~V~f~i~v~~~~~~~~~~k~~~ 154 (237)
.+.+..++| ..+... .+...|.+.|+.+ ..|.++ +=|.+....-.-.+..|.+.|..+.--+..++.
T Consensus 58 ~l~l~~~dg~~~~~~~~~i~d~~~G~i~y~lp~~~l~~~G~v~a~~~i~~~~~~~~~~t~~F~F~V~~s~i~~~~~~~-- 135 (170)
T PF10651_consen 58 KLVLKMSDGSIFIQDDVEIVDPTNGIIQYTLPDEFLKHVGKVKAQLFIYYNGDGQSISTANFTFEVEDSLIDDIIAEE-- 135 (170)
T ss_dssp EEE-TTTTSSSSEEEE-SEEETTTTEEEEE--TTTTHSSEEEEEEEEEEEESSSEEEE---EEEEEE--TTTSSE--E--
T ss_pred EEEEEcCCCcEEEEecceEEcCcCcEEEEEECHHHhccCcEEEEEEEEEECCCCCEEEEeeEEEEEecccccCccccc--
Confidence 334446676 222222 2456888887754 477773 445553211011234577777643211111111
Q ss_pred hhccchHhHHHHHHHHHHHHHHH
Q psy5395 155 DLNVSVQNFTDSVRTVERNINEI 177 (237)
Q Consensus 155 ~l~~~i~~l~~~i~~l~~~l~~i 177 (237)
....+.++++..+.+.+.+.++
T Consensus 136 -~~~Yi~~fd~l~~~i~~~~~~~ 157 (170)
T PF10651_consen 136 -AEYYISDFDDLKKIIKEKVDEI 157 (170)
T ss_dssp -ETTEEHHHHHHHHHHHHHHHHH
T ss_pred -hhcchhhHHHHHHHHHHHHHHH
Confidence 1124555555555555555554
No 123
>KOG0285|consensus
Probab=21.99 E-value=3.6e+02 Score=24.80 Aligned_cols=51 Identities=27% Similarity=0.536 Sum_probs=35.0
Q ss_pred EEEeCCCCCEEecceeeccceEEEeC---------CCeeeEEEEEEcCCCCC----CCeEEEEE
Q psy5395 87 FAVRNPNGQIVHPYEWKKNAEYQDTP---------PHGGYYSVCIDNQFSRN----AGKLVNMY 137 (237)
Q Consensus 87 v~I~dP~g~~v~~~~~~~~g~f~f~~---------~~~G~Y~~Cf~N~~s~~----~~k~V~f~ 137 (237)
+.+.+.++..+..++.++.-.|.+-. .+.|-|.-||+++.++. +.|+|.+.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMY 436 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEE
Confidence 45567788888888777666665541 35777999999998752 34665444
No 124
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.84 E-value=3e+02 Score=25.40 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHHH
Q psy5395 199 NRYVMNWSVIQILVIAA 215 (237)
Q Consensus 199 ~~rv~~~sii~ivvli~ 215 (237)
+.|.++..++.+++-++
T Consensus 335 ~~r~~l~k~inllL~l~ 351 (395)
T PF10267_consen 335 RARALLGKLINLLLTLL 351 (395)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 35666666655544333
No 125
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=21.73 E-value=3.5e+02 Score=20.21 Aligned_cols=29 Identities=10% Similarity=0.265 Sum_probs=15.1
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARS 186 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~ 186 (237)
+++..+...+..|...+..+..|-..++.
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~i 43 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRL 43 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555444443
No 126
>PF10648 Gmad2: Immunoglobulin-like domain of bacterial spore germination; InterPro: IPR018911 This domain is found linked to IPR019606 from INTERPRO in some bacterial proteins. It is predicted to contain an immunoglobulin-like all-beta fold.
Probab=21.70 E-value=2.1e+02 Score=20.25 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=23.0
Q ss_pred CCCEEEEEEEEEeCC---CcceEEEEeCCCCCEEecc
Q psy5395 67 PGATFYVNFQVLRGG---DGMAGFAVRNPNGQIVHPY 100 (237)
Q Consensus 67 ~~~~i~~~y~v~~~~---~~~I~v~I~dP~g~~v~~~ 100 (237)
+|+.+...+.|.... +..+.+.|.|.+|+++.+.
T Consensus 10 pg~~V~sp~~V~G~A~~FEgtv~~rv~D~~g~vl~e~ 46 (88)
T PF10648_consen 10 PGDTVSSPVKVSGKARVFEGTVNIRVRDGHGEVLAEG 46 (88)
T ss_pred CcCCcCCCEEEEEEEEEeeeEEEEEEEcCCCcEEEEe
Confidence 556666666665321 3468899999999998553
No 127
>PHA02665 hypothetical protein; Provisional
Probab=21.67 E-value=61 Score=27.30 Aligned_cols=29 Identities=28% Similarity=0.747 Sum_probs=25.9
Q ss_pred EcCCCcceEEEEcCCCCEEEEEEEEEeCC
Q psy5395 53 IDPGKEDCFFQYVNPGATFYVNFQVLRGG 81 (237)
Q Consensus 53 l~~g~~~Cf~e~v~~~~~i~~~y~v~~~~ 81 (237)
.+||+++|.+-.+..+.-.-..|.|.+|+
T Consensus 25 ~ep~kkkc~ftkirt~~s~a~ry~vsdg~ 53 (322)
T PHA02665 25 FEPGKKKCVFTKIRTSSSLACRYAVSDGG 53 (322)
T ss_pred cccccceeEEEEEecchhhhheeeeccCc
Confidence 47899999999999998899999998875
No 128
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=21.33 E-value=2.6e+02 Score=18.49 Aligned_cols=29 Identities=7% Similarity=0.197 Sum_probs=23.8
Q ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5395 158 VSVQNFTDSVRTVERNINEILQQQYHARS 186 (237)
Q Consensus 158 ~~i~~l~~~i~~l~~~l~~i~~eq~~~r~ 186 (237)
+.++-+.++|..|.++...+..|-.++|.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888999999999998888777764
No 129
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=21.01 E-value=5.5e+02 Score=22.21 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=14.0
Q ss_pred HHHHHhHHhHHHHHHHHHHHHHHHHhH
Q psy5395 192 FNLLEDNNRYVMNWSVIQILVIAATTT 218 (237)
Q Consensus 192 ~~~~est~~rv~~~sii~ivvli~~s~ 218 (237)
-...+.+|..+...+++-++.+...-+
T Consensus 248 ~~~s~~~N~~mk~LTvvt~IflP~t~I 274 (318)
T TIGR00383 248 SLVNNKMNEIMKILTVVSTIFIPLTFI 274 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666665555555554444433
No 130
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=20.55 E-value=3.4e+02 Score=19.65 Aligned_cols=77 Identities=13% Similarity=0.160 Sum_probs=47.2
Q ss_pred EEEEcCCCcceEE-EEcCCCCEEEEEEEEEeCCC-cceEEEEeCCCCCEEecceeeccc------e--EEEeCCCeeeEE
Q psy5395 50 KIHIDPGKEDCFF-QYVNPGATFYVNFQVLRGGD-GMAGFAVRNPNGQIVHPYEWKKNA------E--YQDTPPHGGYYS 119 (237)
Q Consensus 50 ~f~l~~g~~~Cf~-e~v~~~~~i~~~y~v~~~~~-~~I~v~I~dP~g~~v~~~~~~~~g------~--f~f~~~~~G~Y~ 119 (237)
.-.+.+|.--+|. .+++.+....+.+++..++. ..+.+.|-+|+|..+..-.-.+.| . ..... ..|.|.
T Consensus 25 ~~~~~~G~~~~~~~Vd~~~~g~y~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~~~~tg~w~~~~~~~~~v~l-~~G~h~ 103 (125)
T PF03422_consen 25 VGYIENGDWIEYNNVDVPEAGTYTLTIRYANGGGGGTIELRIDGPDGTLIGTVSLPPTGGWDTWQTVSVSVKL-PAGKHT 103 (125)
T ss_dssp EESSSTTTEEEEEEEEESSSEEEEEEEEEEESSSSEEEEEEETTTTSEEEEEEEEE-ESSTTEEEEEEEEEEE-ESEEEE
T ss_pred EecccCCCEEEEEEEeeCCCceEEEEEEEECCCCCcEEEEEECCCCCcEEEEEEEcCCCCccccEEEEEEEee-CCCeeE
Confidence 3345667777777 77776666555555555443 568888888888776654322222 1 12222 349999
Q ss_pred EEEEcCCC
Q psy5395 120 VCIDNQFS 127 (237)
Q Consensus 120 ~Cf~N~~s 127 (237)
+.|.....
T Consensus 104 i~l~~~~~ 111 (125)
T PF03422_consen 104 IYLVFNGG 111 (125)
T ss_dssp EEEEESSS
T ss_pred EEEEEECC
Confidence 99987765
No 131
>PHA02650 hypothetical protein; Provisional
Probab=20.07 E-value=1.4e+02 Score=20.95 Aligned_cols=34 Identities=3% Similarity=0.086 Sum_probs=24.2
Q ss_pred HHhHHhHHHHHHHHHHHHHHHHhHHHHHHHHHhc
Q psy5395 195 LEDNNRYVMNWSVIQILVIAATTTVQVYFVRQLF 228 (237)
Q Consensus 195 ~est~~rv~~~sii~ivvli~~s~~Qv~~LkrfF 228 (237)
..+.+..-.++-++-+++++++.++-..|||-.=
T Consensus 41 ~~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~ 74 (81)
T PHA02650 41 IKSVSWFNGQNFIFLIFSLIIVALFSFFVFKGYT 74 (81)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666667778888888888888888654
Done!