RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5395
(237 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.025
Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 89/253 (35%)
Query: 2 LRNWCFFCLSLVFS---LKYVLSGS---MQA-VTA---STSDESAPWYENLPAVAMDYKI 51
L ++ L F+ L+ L G+ Q VTA + +D ++ ++ A+
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV-RKAITVLF 304
Query: 52 HIDPGKEDCFFQYVNPGATF--YVNFQVLRGGDG----MAGFAVRNPNGQIVHPYEWKKN 105
I G C P + + L +G M ++ N + V Y K N
Sbjct: 305 FI--GVR-C--YEAYPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQEQVQDYVNKTN 357
Query: 106 AEYQDTPPHG----------------GY----YSVCI----------DNQ----FSRNAG 131
+ P G Y + + +Q FS
Sbjct: 358 SH---LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 132 KLVNMYLTV---------------VRYD------QWDKYHKEIEDLNVSVQNFTDS--VR 168
K N +L V + D ++ +D+ + V + D +R
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA-----KDIQIPVYDTFDGSDLR 469
Query: 169 TVERNINEILQQQ 181
+ +I+E +
Sbjct: 470 VLSGSISERIVDC 482
Score = 28.1 bits (62), Expect = 3.6
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 45/141 (31%)
Query: 123 DNQFSRNAGKLVNMYLT-VVRYDQWDKYHKEIEDLNVSVQNFTD---------------- 165
D++ + A +LV +L V + K + + LN+ + F +
Sbjct: 51 DDEPTTPA-ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL 109
Query: 166 -SVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVIQILVIAATT------- 217
T E+++ AR R F+ ++ L A
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNS-----------ALFRAVGEGNAQLVA 158
Query: 218 ------TVQVYF--VRQLFNS 230
YF +R L+ +
Sbjct: 159 IFGGQGNTDDYFEELRDLYQT 179
Score = 27.3 bits (60), Expect = 5.4
Identities = 6/46 (13%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 18 YVLSGSMQAVTASTS--DESAPWYENLPAVAMDYKIHIDPGKEDCF 61
YV +G ++A+ T+ + + + + + + ++ + F
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIK--LQKIDIIELQKSLSLEEVEGHLF 1896
Score = 27.3 bits (60), Expect = 5.8
Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 13/49 (26%)
Query: 63 QYVNPGATFYVNFQVLRG----GDGMA----GFA----VR-NPNGQIVH 98
Q G Y + + D GF+ V NP +H
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIH 1675
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.038
Identities = 24/163 (14%), Positives = 48/163 (29%), Gaps = 36/163 (22%)
Query: 82 DGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVV 141
DG+ G G+ + + + Q ++ + + N S ++ M +
Sbjct: 156 DGVLGS------GKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCNSPET--VLEMLQKL- 205
Query: 142 RYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLE-DNNR 200
Q D D N + +++ + +L+ + + LL N
Sbjct: 206 -LYQIDPNWTSRSD---HSSNIKLRIHSIQAELRRLLKSKPYENC-------LLVLLN-- 252
Query: 201 YVMNWSVI-------QILVIAATTTVQVYFVRQLFNSKTNKPR 236
V N +IL+ TT L + T
Sbjct: 253 -VQNAKAWNAFNLSCKILL----TTRFKQVTDFLSAATTTHIS 290
Score = 32.9 bits (74), Expect = 0.085
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 29/121 (23%)
Query: 101 EWKKNAEYQDTPPHGGYYSVC--IDNQFSRNAGKLVNMYLTVVRYDQWDK---------- 148
+ K + Y + ++N+++ + +V+ Y +D D
Sbjct: 419 KQPKESTISI---PSIYLELKVKLENEYALHR-SIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 149 ----YH----KEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNR 200
+H + E + + F D R +E+ I A + N L+
Sbjct: 475 SHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIR----HDSTAWNASGSILNTLQQLKF 529
Query: 201 Y 201
Y
Sbjct: 530 Y 530
Score = 30.6 bits (68), Expect = 0.54
Identities = 8/86 (9%), Positives = 28/86 (32%), Gaps = 10/86 (11%)
Query: 149 YHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRYVMNWSVI 208
+H D + ++I + + + + D ++D + +++ I
Sbjct: 2 HHHHHMDFETGEHQYQY------KDILSVFEDAF----VDNFDCKDVQDMPKSILSKEEI 51
Query: 209 QILVIAATTTVQVYFVRQLFNSKTNK 234
++++ + SK +
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEE 77
Score = 28.3 bits (62), Expect = 3.1
Identities = 6/89 (6%), Positives = 26/89 (29%), Gaps = 17/89 (19%)
Query: 142 RYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSREARDFNLLEDNNRY 201
+D W + L +++ + + E ++ + ++ +
Sbjct: 343 TWDNWKHV--NCDKLTTIIESSLNVLEPAE------YRKMF-------DRLSVFPPSAHI 387
Query: 202 VMNWSVIQILVIAATTTVQVYFVRQLFNS 230
++ ++ + + V +L
Sbjct: 388 PT--ILLSLIWFDVIKSDVMVVVNKLHKY 414
Score = 26.7 bits (58), Expect = 9.9
Identities = 27/213 (12%), Positives = 52/213 (24%), Gaps = 67/213 (31%)
Query: 44 AVAMDYKIHIDPGKEDCFFQYVNPGATFYVNF-QVLRGGDGMAGFAVRNPNGQIVHPYEW 102
V + YK+ C F++N + ++ QI W
Sbjct: 169 DVCLSYKVQ-------CKM----DFKIFWLNLKNCNSPETVLE--MLQKLLYQIDPN--W 213
Query: 103 KKNAEYQDTPPHGGYYSVCIDNQFSR--NAGKLVNMYLTVVRYDQWDKYHKEIEDLNV-- 158
+++ I + R + N L V+ + + K N+
Sbjct: 214 TSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENCLL-VLL-NVQNA--KAWNAFNLSC 266
Query: 159 ---------SVQNFTDSVRTVERNINEILQQQYHARS----------------REA---- 189
V +F + T +++ RE
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 190 -----------RDFNLLEDNNRYVMNWSVIQIL 211
RD DN ++V + I+
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.072
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 11/37 (29%)
Query: 15 SLKYVLSGSMQAVTASTSDESAPWYENLPAVAMDYKI 51
+LK L S++ +D+SA PA+A+ +
Sbjct: 21 ALKK-LQASLKLY----ADDSA------PALAIKATM 46
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon
fold, PSI, protein ST initiative, midwest center for
structural genomics; HET: MSE; 1.90A {Aquifex aeolicus}
SCOP: a.22.1.4
Length = 171
Score = 28.1 bits (62), Expect = 1.6
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 128 RNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSR 187
+N K+ M L +D+ D Y + D++++ + + +V+ ++
Sbjct: 15 KNYSKIETM-LRPKGFDKLDHYFRTELDIDLTDETIELLLNSVKAAFGKLFYGAEQRARW 73
Query: 188 EARDFNLLED 197
RDF L D
Sbjct: 74 NGRDFIALAD 83
>3exm_A Phosphatase SC4828; nucleoside diphosphatase, GDP/UDP'ASE, non-HYD
GDP analogue, lipocalcin fold, metalloprotein,
hydrolase; HET: GP2; 1.65A {Streptomyces coelicolor A3}
PDB: 3cbt_A* 3bxt_A
Length = 237
Score = 27.4 bits (60), Expect = 4.2
Identities = 17/102 (16%), Positives = 32/102 (31%), Gaps = 4/102 (3%)
Query: 64 YVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPHGGYYSVCID 123
++ PG + A R + V +W + P G +SV +
Sbjct: 63 WLAPGTECVKPVLADGTPVHLEPLATRYTKPRTVQRDQWFGTGVLKLARP-GEAWSVWL- 120
Query: 124 NQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTD 165
F + N Y+ + R + + ED + + D
Sbjct: 121 --FWDPGWRFKNWYVNLERPLTRWEGGVDSEDHFLDISVHPD 160
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 27.2 bits (60), Expect = 5.1
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 14/118 (11%)
Query: 37 PWYENLPAVAMDYKIHIDPG-KEDCFFQYVNPGATFYVNFQVLRGGDGMAGFAVRNPNGQ 95
+ + ++ + I G ++ + PG F G D G ++ G+
Sbjct: 268 YYVRDQVKQQYEHSVQISRGSSHQVEYEILFPGCVLRWQFMSD-GADVGFGIFLKTKMGE 326
Query: 96 IVHPYEWKKNAEYQDTPPHG------------GYYSVCIDNQFSRNAGKLVNMYLTVV 141
E + Q H G Y + DN +S K VN + V+
Sbjct: 327 RQRAGEMTEVLPNQRYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVL 384
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 27.2 bits (60), Expect = 5.1
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 151 KEIEDLNVSVQNFTDSVRTVERNINEILQQQYH-ARSREARDFNLLEDN 198
K+ + L S++ D VRT ER I ++ +Q + F E +
Sbjct: 155 KQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETS 203
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 25.9 bits (58), Expect = 6.4
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 144 DQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSRE 188
++W + + E+LN V ++ V++ + I+E L++ E
Sbjct: 12 EEW--FFTKTEELNREVATNSELVQSGKSEISE-LRRTMQNLEIE 53
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion
protein; gitrl, glucocorticoid-induced TNF receptor
ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP:
b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Length = 166
Score = 26.4 bits (57), Expect = 6.8
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 164 TDSVRTVERNINEILQQQYHARSREARDFNLLED 197
++ +E I EIL + YH + AR L+ +
Sbjct: 6 GSRMKQIEDKIEEILSKIYHIENEIARIKKLIGE 39
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 25.9 bits (58), Expect = 7.1
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 144 DQWDKYHKEIEDLNVSVQNFTDSVRTVERNINEILQQQYHARSRE 188
+ W Y + E+L + D +R + I+E + + E
Sbjct: 10 ESW--YQTKYEELQQTAGRHGDDLRNTKHEISE-MNRMIQRLRAE 51
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.419
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,680,714
Number of extensions: 213978
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 405
Number of HSP's successfully gapped: 24
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)