RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5395
         (237 letters)



>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF),
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 14/108 (12%)

Query: 51  IHIDPGK-EDCFFQYVNPGATFYVNFQVLRGGDGM-------AGFAVRNPNGQIVHPYEW 102
           + I  G      ++ + PG      F       G         G   R      V P + 
Sbjct: 8   VQISRGSSHQVEYEILFPGCVLRWQFMSDGADVGFGIFLKTKMGERQRAGEMTEVLPNQ- 66

Query: 103 KKNAEYQD-----TPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQ 145
           + N+         T    G Y +  DN +S    K VN  + V+  D+
Sbjct: 67  RYNSHLVPEDGTLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDK 114


>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId:
           562]}
          Length = 196

 Score = 30.2 bits (67), Expect = 0.14
 Identities = 12/131 (9%), Positives = 29/131 (22%), Gaps = 18/131 (13%)

Query: 56  GKEDCFFQYVNP--GATFYVNFQVLRGGDGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPP 113
           G  D     ++   GA    +  +L  G                   E            
Sbjct: 1   GARDVIQVVIDHNVGAGVITDGHLLHAGSSSLV--------------EIGHTQVDPYGKR 46

Query: 114 HGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNVSVQNFTDSVRTVERN 173
                  C++   S ++  ++ +    +        H +   ++   Q         +  
Sbjct: 47  CYCGNHGCLETIASVDS--ILELAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDI 104

Query: 174 INEILQQQYHA 184
           I  +       
Sbjct: 105 ITGVGAHVGRI 115


>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase
           SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}
          Length = 107

 Score = 26.1 bits (57), Expect = 2.1
 Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 14/106 (13%)

Query: 82  DGMAGFAVRNPNGQIVHPYEWKKNAEYQDTPPH---GGYYSVCIDNQFSRNAGKLVNMYL 138
            G+  +A   P G ++H   +++   +         G   +  +    +  A   +    
Sbjct: 5   KGLDEYAKAVP-GSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPI---- 59

Query: 139 TVVRYDQWDKYHKEIEDL--NVSVQNFTDSVR----TVERNINEIL 178
                   D  ++ ++ +         T  +      V  NI+ ++
Sbjct: 60  YQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVI 105


>d2d0ta1 a.266.1.2 (A:12-403) Indoleamine 2,3-dioxygenase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 392

 Score = 26.1 bits (57), Expect = 4.3
 Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 2/30 (6%)

Query: 95  QIVHPYEWKKNAEYQDTPPHGGYYSVCIDN 124
            I  P  + + ++  + PP   Y    + N
Sbjct: 95  NIAVP--YCQLSKKLELPPILVYADCVLAN 122


>g1y43.1 b.29.1.20 (A:1-32,B:3-173) Aspergillopepsin II
          {Aspergillus niger [TaxId: 5061]}
          Length = 203

 Score = 25.2 bits (55), Expect = 6.8
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)

Query: 21 SGSMQAVTASTSDESAP----WYENLPAVAMDYK-IHIDPG 56
          +  +Q       ++       WYE  P  A D+  I I  G
Sbjct: 50 TAILQTGVDFCYEDGQTSYDAWYEWYPDYAYDFSDITISEG 90


>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
           isoenzyme 6 [TaxId: 9606]}
          Length = 173

 Score = 24.9 bits (53), Expect = 7.5
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 99  PYEWKKNAEYQDTPPHGGYYSVCIDNQFSRNAGKLVNMYLTVVRYDQWDKYHKEIEDLNV 158
           P  W        T  +  Y  +       +     +   +  V Y++    +KE     +
Sbjct: 86  PERWFHIVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEIVHQL 145

Query: 159 SVQNFTDSVRTVERNINEILQ 179
                ++    +E N+++IL+
Sbjct: 146 P----SNKPEELENNVDQILK 162


>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 175

 Score = 24.8 bits (53), Expect = 9.0
 Identities = 6/19 (31%), Positives = 10/19 (52%)

Query: 68 GATFYVNFQVLRGGDGMAG 86
          G    +N ++ RG  G+ G
Sbjct: 14 GGAMIINGRLHRGRHGLGG 32


>d1bo1a_ d.143.1.2 (A:) Phosphatidylinositol phosphate kinase
           IIbeta, PIPK IIbeta {Human (Homo sapiens) [TaxId: 9606]}
          Length = 383

 Score = 25.0 bits (54), Expect = 9.2
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 6   CFFCLSLVFSLKYVLSGSMQAVTASTSDESAPW--YENLPAVAMDYKIHIDPGKEDCFFQ 63
             F   L    KY L GS  A  AS  +++     +++   +    K+H+    +  F +
Sbjct: 170 NVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLNEGQKLHVGEESKKNFLE 229

Query: 64  YVNPGATFYVNFQVL 78
            +     F    +++
Sbjct: 230 KLKRDVEFLAQLKIM 244


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 916,310
Number of extensions: 42410
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 20
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.6 bits)