Query psy5396
Match_columns 291
No_of_seqs 175 out of 420
Neff 6.7
Searched_HMMs 46136
Date Sat Aug 17 01:30:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5396.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5396hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03122 Poly [ADP-ribose] pol 100.0 4.2E-28 9.2E-33 249.2 15.6 200 9-232 502-722 (815)
2 PLN03124 poly [ADP-ribose] pol 100.0 1.3E-27 2.8E-32 240.0 18.3 195 9-231 341-556 (643)
3 PLN03123 poly [ADP-ribose] pol 99.9 5.3E-27 1.1E-31 245.4 19.3 200 8-231 680-896 (981)
4 cd01437 parp_like Poly(ADP-rib 99.9 4.1E-26 8.8E-31 216.5 16.9 200 7-231 49-265 (347)
5 PF00644 PARP: Poly(ADP-ribose 99.8 2E-21 4.3E-26 172.0 8.2 167 103-280 2-205 (206)
6 cd01341 ADP_ribosyl ADP_ribosy 99.6 9.9E-16 2.1E-20 127.9 5.3 74 160-233 1-87 (137)
7 cd01438 tankyrase_like Tankyra 99.6 6.1E-14 1.3E-18 125.3 14.6 121 158-282 89-221 (223)
8 cd01439 TCCD_inducible_PARP_li 99.5 1.3E-13 2.9E-18 112.8 7.4 112 160-279 1-121 (121)
9 KOG1037|consensus 98.6 8.9E-09 1.9E-13 103.2 0.2 121 102-230 307-436 (531)
10 PRK00819 RNA 2'-phosphotransfe 91.3 0.21 4.5E-06 43.7 3.4 37 159-201 95-131 (179)
11 PF01885 PTS_2-RNA: RNA 2'-pho 88.9 0.37 8E-06 42.3 3.0 38 158-201 105-142 (186)
12 PF13151 DUF3990: Protein of u 87.4 0.25 5.3E-06 42.1 0.9 61 159-231 1-61 (154)
13 COG1859 KptA RNA:NAD 2'-phosph 82.8 1.1 2.4E-05 40.1 2.8 39 158-202 120-158 (211)
14 PTZ00315 2'-phosphotransferase 74.6 2.9 6.3E-05 42.9 3.3 36 160-201 478-514 (582)
15 KOG2278|consensus 66.2 2.9 6.3E-05 36.4 1.1 22 160-181 107-128 (207)
16 cd01436 Dipth_tox_like Mono-AD 65.0 6 0.00013 32.5 2.6 44 161-207 2-51 (147)
17 PF09009 Exotox-A_cataly: Exot 43.8 26 0.00056 30.7 3.2 50 158-208 48-101 (236)
18 PF15633 Tox-ART-HYD1: HYD1 si 43.6 17 0.00037 28.6 1.9 56 161-216 1-61 (96)
19 KOG2675|consensus 29.0 54 0.0012 32.6 3.1 37 221-276 389-425 (480)
20 cd01785 PDZ_GEF_RA Ubiquitin-l 25.7 89 0.0019 23.8 3.1 24 259-283 1-24 (85)
21 PF14487 DUF4433: Domain of un 24.7 34 0.00073 30.0 0.9 18 162-179 1-19 (205)
22 PF14559 TPR_19: Tetratricopep 22.6 1.1E+02 0.0024 20.8 3.1 39 3-41 4-42 (68)
No 1
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.95 E-value=4.2e-28 Score=249.19 Aligned_cols=200 Identities=16% Similarity=0.142 Sum_probs=138.1
Q ss_pred HHHHHHHHHHhCccchhHH-HHHHHHHhhcccccccccC-CCCcccCCCCCCHHHHHH----HhccCCChHHHHHhhhcC
Q psy5396 9 KITELKQILAWNKLGCDIK-WSIFVSACQSYRVSSCLHP-FPPMFIKNQHKDISAVLE----CINQMPLLSSVLHSQRNS 82 (291)
Q Consensus 9 ~~~~l~~~L~~d~~~~Dll-~slf~aAa~S~r~~s~l~P-fP~~~~~~~~kd~d~L~~----~l~~lP~l~~m~~~l~~~ 82 (291)
.|.+|+++|+.... .+-. -.++..+ |.|++++++. .|| .++ +.+.|.. +|+.|-.|+...+ +...
T Consensus 502 vL~ei~~~l~~~~~-~~~~~~~~~~dl--SnrfYTlIPh~~pp-vi~----~~~~lk~k~~~mLe~L~DIeiA~~-ll~~ 572 (815)
T PLN03122 502 VLLEFAEFVKSEKE-TGQKAEAMWLDF--SNKWFSLVHSTRPF-VIR----DIDELADHAASALETVRDINVASR-LIGD 572 (815)
T ss_pred HHHHHHHHHhcccc-ccchhHHHHHHH--hccceeccCCCCCC-CCC----CHHHHHHHHHHHHHHHHHHHHHHH-HHhh
Confidence 46777777764322 1111 1223333 5599998765 233 333 5555544 3444444433333 2222
Q ss_pred CCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCCC---------ceeeEEEecCCCCchhhhhhhh
Q psy5396 83 HPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVAK---------PDFIFQVQYSPQSSIESNWSKL 151 (291)
Q Consensus 83 ~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~~---------p~~iF~V~~~~~~~~e~~F~~~ 151 (291)
.. .....+.|+-.+....|.|++|+++ ||..|.+|+..|+.+++ ..-||+|.+.+ +.+|...
T Consensus 573 ~~---~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~g----e~rf~~~ 645 (815)
T PLN03122 573 MT---GSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSA----GPSLDEI 645 (815)
T ss_pred cc---ccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCc----cccchhh
Confidence 11 1223466777777878999999775 79999999999885554 44589999875 4588876
Q ss_pred ccCCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEe
Q psy5396 152 SLGRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCS 227 (291)
Q Consensus 152 ~~~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcE 227 (291)
.+..+ ++++|||||+.||.+||++||++++ .+|+|||+||||||++++|++||.+... ...++|.|||
T Consensus 646 ~~l~N-R~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~SKSAnYC~t~~~-------~~~GlLlLcE 717 (815)
T PLN03122 646 KKLPN-KVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAAAEAARYGFTAVD-------RPEGFLVLAV 717 (815)
T ss_pred cCCCC-ceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchhhhhhhhhccccC-------CCcceEEEEH
Confidence 65567 9999999999999999999999996 4799999999999999999999965432 1257799999
Q ss_pred eecCC
Q psy5396 228 IVDDP 232 (291)
Q Consensus 228 vv~~p 232 (291)
|+...
T Consensus 718 VALG~ 722 (815)
T PLN03122 718 ASLGD 722 (815)
T ss_pred hhcCc
Confidence 97643
No 2
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=99.95 E-value=1.3e-27 Score=239.96 Aligned_cols=195 Identities=16% Similarity=0.248 Sum_probs=136.8
Q ss_pred HHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccC-C----C-CcccCCCCCCHHHHHHHhccCCChHHH---HHhh
Q psy5396 9 KITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHP-F----P-PMFIKNQHKDISAVLECINQMPLLSSV---LHSQ 79 (291)
Q Consensus 9 ~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~P-f----P-~~~~~~~~kd~d~L~~~l~~lP~l~~m---~~~l 79 (291)
.|.+|+++|..... ..+..+ |.||+++++. | | +..| .+.+.|.+.++.|..|.+| .+-+
T Consensus 341 vL~ei~~~l~~~~~------~~l~~l--Sn~FYTlIPH~FG~~~~~~~vI----dt~~~lk~k~elLe~L~DIevA~~ll 408 (643)
T PLN03124 341 VLKRIAEVISRSDR------ETLEEL--SGEFYTVIPHDFGFKKMRQFTI----DTPQKLKHKLEMVEALGEIEIATKLL 408 (643)
T ss_pred HHHHHHHHHcccch------HHHHHH--hcCeEEecCcccccCCCCcccc----CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777754321 223333 5588887643 1 1 1223 2555555544444444444 3322
Q ss_pred hcCCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCCC------ceeeEEEecCCCCchhhhhhhh
Q psy5396 80 RNSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVAK------PDFIFQVQYSPQSSIESNWSKL 151 (291)
Q Consensus 80 ~~~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~~------p~~iF~V~~~~~~~~e~~F~~~ 151 (291)
. .. .....+.|.-.+.+..|.|++|+++ ||..|.+|+.+++..++ ..-||+|.+.++ +++|++.
T Consensus 409 ~-~~----~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E---~~rF~~~ 480 (643)
T PLN03124 409 K-DD----IGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGE---DERFQKF 480 (643)
T ss_pred h-hc----cCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccccc---hhhHHHh
Confidence 2 21 1123356777778888999999775 79999999988875544 355899999876 5899987
Q ss_pred ccCCCceEEEEcCCCchhHHHHHHhccccCCC----CCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEe
Q psy5396 152 SLGRKKILHAFHGSRLENFHSILNFGLQQHFN----KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCS 227 (291)
Q Consensus 152 ~~~~~~~~~afHGS~~~N~~sIL~~GL~~~~~----~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcE 227 (291)
....+ ++|+||||+..||++||++||+++++ +|+|||+|||||+.+++|++||.++.. ...++|+|||
T Consensus 481 ~~~~N-r~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~-------~~~g~llLce 552 (643)
T PLN03124 481 SSTKN-RMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAA-------NPDGVLLLCE 552 (643)
T ss_pred hccCC-eEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCC-------CCeeEEEEEE
Confidence 66567 99999999999999999999998864 689999999999999999999976432 1258899999
Q ss_pred eecC
Q psy5396 228 IVDD 231 (291)
Q Consensus 228 vv~~ 231 (291)
|+..
T Consensus 553 VaLG 556 (643)
T PLN03124 553 VALG 556 (643)
T ss_pred EecC
Confidence 9864
No 3
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.95 E-value=5.3e-27 Score=245.40 Aligned_cols=200 Identities=18% Similarity=0.253 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccC-CCCcccCCCCCCHHHHH---HHhccCCChHHHHHhhhcCC
Q psy5396 8 VKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHP-FPPMFIKNQHKDISAVL---ECINQMPLLSSVLHSQRNSH 83 (291)
Q Consensus 8 ~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~P-fP~~~~~~~~kd~d~L~---~~l~~lP~l~~m~~~l~~~~ 83 (291)
..|.+|+++|+.....-+..-+.+..+ |.|++++++. +|| .++ +.+.|. ++|+.|-.|+...+ +....
T Consensus 680 ~vL~ei~~~l~~~~~~~~~~~~~l~~l--Sn~fYtlIPh~~pp-~I~----~~~~ik~k~~lLe~L~dieiA~~-ll~~~ 751 (981)
T PLN03123 680 EALTEIQNLLKENDQDPSIRESLLVDA--SNRFFTLIPSIHPH-IIR----DEDDLKSKVKMLEALQDIEIASR-LVGFD 751 (981)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHH--hhccEecCCCCCCC-cCC----CHHHHHHHHHHHHHHHHHHHHHH-HHhcc
Confidence 347788888876544333333444444 4488988765 344 343 455554 44555444443333 22221
Q ss_pred CCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCCCC------ceeeEEEecCCCCchhhhhhhhcc-C
Q psy5396 84 PSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNVAK------PDFIFQVQYSPQSSIESNWSKLSL-G 154 (291)
Q Consensus 84 ~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~~~------p~~iF~V~~~~~~~~e~~F~~~~~-~ 154 (291)
....+.|+-.+....|.|++|+++ ||..|.+|+..++.+++ ..-||+|.+.++ .++|.+.+. .
T Consensus 752 -----~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~Yl~nT~~~th~~y~l~v~~IF~v~r~gE---~~rf~~~~~~~ 823 (981)
T PLN03123 752 -----VDEDDSLDDKYKKLHCDISPLPHDSEDYKLIEKYLLTTHAPTHTDWSLELEEVFSLEREGE---FDKYAPYKEKL 823 (981)
T ss_pred -----CcCCCchHHHHHhcCCeEEECCCCCHHHHHHHHHHHhcCCCccccccceeeEEEEeccccc---ccchhhHhhcC
Confidence 123567777888888999999775 79999999988875554 556899999876 488887643 3
Q ss_pred CCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeec
Q psy5396 155 RKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVD 230 (291)
Q Consensus 155 ~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~ 230 (291)
.+ ++++|||||..||.+||++||++++ .+|+|||+||||||.+++|++||.++.. ...++|.||||+.
T Consensus 824 ~N-r~LLwHGSr~~N~~gILs~GLriaPpeap~tGymfGkGIYFAD~~SKSanYc~~~~~-------~~~g~llLceVaL 895 (981)
T PLN03123 824 KN-RMLLWHGSRLTNFVGILSQGLRIAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDRK-------NPVGLMLLSEVAL 895 (981)
T ss_pred CC-ceEEEcCCCcccHHHHhhccCccCCccccccCccccceeEecchhhhhhhhhcccCC-------CCceEEEEEEEec
Confidence 56 9999999999999999999999885 4799999999999999999999976432 1257899999986
Q ss_pred C
Q psy5396 231 D 231 (291)
Q Consensus 231 ~ 231 (291)
.
T Consensus 896 G 896 (981)
T PLN03123 896 G 896 (981)
T ss_pred C
Confidence 4
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=99.94 E-value=4.1e-26 Score=216.47 Aligned_cols=200 Identities=18% Similarity=0.202 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHhhcccccccccCCCCcccCCC---CCCHHHHHHHhccCCChHHHH---Hhhh
Q psy5396 7 DVKITELKQILAWNKLGCDIKWSIFVSACQSYRVSSCLHPFPPMFIKNQ---HKDISAVLECINQMPLLSSVL---HSQR 80 (291)
Q Consensus 7 ~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~s~l~PfP~~~~~~~---~kd~d~L~~~l~~lP~l~~m~---~~l~ 80 (291)
.+.|.+|+++|...... -.-+..+ |.|++++ +|+.|.... ..+.+.|.+.++.|-.|.+|. +-+.
T Consensus 49 ~~vL~~i~~~l~~~~~~----~~~l~~l--s~~FYtl---IPh~fg~~~p~~i~~~~~l~~k~~lle~L~die~a~~l~~ 119 (347)
T cd01437 49 YEVLKEIEEALKRGSSQ----GSQLEEL--SNEFYTL---IPHDFGMSKPPVIDNEELLKAKRELLEALRDIEIASKLLK 119 (347)
T ss_pred HHHHHHHHHHHhccccc----hHHHHHH--HHHHHHh---CCccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34477777777765442 1112222 3366665 556653321 235555544444444444443 2221
Q ss_pred cCCCCCCCcchhHHHHHHHHhCCCeEEeCCcc--hHHHHHHhhcCCCCC-----CCceeeEEEecCCCCchhhhhhhhcc
Q psy5396 81 NSHPSPKLCDLIYLLHWLLVEQSPSLEEVPRD--QYDSVLNLVSCEPNV-----AKPDFIFQVQYSPQSSIESNWSKLSL 153 (291)
Q Consensus 81 ~~~~~~~~~~~~~LL~Wil~s~~~~l~~l~~~--e~~~l~~~~~~~~~~-----~~p~~iF~V~~~~~~~~e~~F~~~~~ 153 (291)
... ....+.|.-.+.+..|.+.+++++ ||+.|.+++..++.. ...+.||+|++..+ .++|++.++
T Consensus 120 ~~~-----~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~~~~~~~V~~If~i~r~~e---~~~F~~~~~ 191 (347)
T cd01437 120 DDE-----DDSDDPLDANYEKLKCKIEPLDKDSEEYKIIEKYLKNTHAPTTEYTVEVQEIFRVEREGE---TDRFKPFKK 191 (347)
T ss_pred hcc-----cCCCCcchhHHHHcCeeEEECCCCChHHHHHHHHHHhcCCCCCCcceeEEEEEEecCCCc---hhhhHHhhc
Confidence 111 122345555666777899999775 799999999876643 44567999988765 589997666
Q ss_pred CCCceEEEEcCCCchhHHHHHHhccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeee
Q psy5396 154 GRKKILHAFHGSRLENFHSILNFGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIV 229 (291)
Q Consensus 154 ~~~~~~~afHGS~~~N~~sIL~~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv 229 (291)
..+ ++++||||+..||.+||++||+.++ .+|+|||+|||||+++++|++||.++.. ...++|+||||+
T Consensus 192 ~~n-~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfGkGIYFAd~~skS~~Y~~~~~~-------~~~~~mlLc~V~ 263 (347)
T cd01437 192 LGN-RKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFGKGIYFADMFSKSANYCHASAS-------DPTGLLLLCEVA 263 (347)
T ss_pred cCC-eEEEEcCCChhhHHHHHhcCCCcCccccccCCccccceEeecCchHhhhhhcccCCC-------CCceEEEEEEEe
Confidence 667 9999999999999999999999875 4688999999999999999999976542 136889999998
Q ss_pred cC
Q psy5396 230 DD 231 (291)
Q Consensus 230 ~~ 231 (291)
..
T Consensus 264 lG 265 (347)
T cd01437 264 LG 265 (347)
T ss_pred cC
Confidence 64
No 5
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=99.85 E-value=2e-21 Score=172.04 Aligned_cols=167 Identities=21% Similarity=0.290 Sum_probs=114.3
Q ss_pred CCeEEeCCcc--hHHHHHHhhcCCCC-----CCCceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCchhHHHHHH
Q psy5396 103 SPSLEEVPRD--QYDSVLNLVSCEPN-----VAKPDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILN 175 (291)
Q Consensus 103 ~~~l~~l~~~--e~~~l~~~~~~~~~-----~~~p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~N~~sIL~ 175 (291)
.|.|+.|+++ ||+.|.++...+.+ ......||+|+... . .++|...++..+ .+++|||++.+||.+||+
T Consensus 2 ~~~l~~l~~~s~ey~~I~~~f~~~~~~~~~~~~~I~~I~~i~~~~-~--~~~f~~~~~~~n-~~~L~HGt~~~~~~~I~~ 77 (206)
T PF00644_consen 2 NCELVPLEPDSEEYKEIEKYFKKTWKPVHKYKPKIKKIFRIQNPS-L--WERFEEKKKEGN-ERLLFHGTSAENICSILR 77 (206)
T ss_dssp TEEEEEEETTSHHHHHHHHHHHHTSTSTTTEEEEEEEEEEEEEHH-H--HHHHHHHHHSSS-EEEEEEEETGGGHHHHHH
T ss_pred CCEEEEcCCCCHHHHHHHHHHHhHCCCCCCCCCEEEEEEEEcChh-H--HHHHHHHHhcCC-ceEEeCCCChhhccchhc
Confidence 4778888654 78898888765433 34456678887753 2 689998877667 999999999999999999
Q ss_pred hccccCC----CCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCC--------------Cccee
Q psy5396 176 FGLQQHF----NKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDP--------------DQVKC 237 (291)
Q Consensus 176 ~GL~~~~----~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p--------------~~~~~ 237 (291)
+||++.. .+|.+||+|||||+++++|..||..+..++ .++|.||+|+... .++.+
T Consensus 78 ~G~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~~~g-------~~~~llc~V~lG~~~~~~~~~~~~~~~~g~~s 150 (206)
T PF00644_consen 78 NGFKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSDSNG-------ERFMLLCRVALGKPYELKNDNPMTSPPPGYDS 150 (206)
T ss_dssp HSS---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSESSSS-------EEEEEEEEEEECSEEEESSCCTGSSGCTTESE
T ss_pred CCCccCccccccCCceeeeEEEeCcchhhhcccCCCccCCc-------ceeeeEEEEEeccceeeccCcccccccCCcce
Confidence 9996532 246799999999999999999998744322 4678888887543 11111
Q ss_pred cccchh-hH-----------hhhhhccCCCCCcCCeEEEEecCCeeEEEEEEEEe
Q psy5396 238 QEDTEE-NR-----------RRALAQDSLGGEVPHKYYVVENSALVKVKYVLVYT 280 (291)
Q Consensus 238 ~~~~~~-~~-----------~~~~~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~ 280 (291)
...... .+ .........+.......|||.|++++++|||+.|.
T Consensus 151 v~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YLi~y~ 205 (206)
T PF00644_consen 151 VKGVGSKTPEDTIDEDGVPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYLITYK 205 (206)
T ss_dssp EEECESEEEGGEEEETTETTSSEEESCEESSSSSCSEEEESSGGGEEEEEEEEEE
T ss_pred ecCCCccCCccccccCCCCCCCCccCccCCCccCCCEEEEEcccceeeEEEEEEE
Confidence 100000 00 00001111223355677999999999999999985
No 6
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.59 E-value=9.9e-16 Score=127.85 Aligned_cols=74 Identities=26% Similarity=0.313 Sum_probs=57.5
Q ss_pred EEEcCCCchhHHHHHHhccccCCCC----CcccCceeEEeccccccccccCCCCCC-CC--------CCCCccccEEEEE
Q psy5396 160 HAFHGSRLENFHSILNFGLQQHFNK----NSLFGQGIYLSSQLGICLIYSPYSAGW-GG--------SCVGSELSIVSLC 226 (291)
Q Consensus 160 ~afHGS~~~N~~sIL~~GL~~~~~~----~~~~G~GiYls~~~~~S~~ys~~~~~w-~~--------S~~g~~l~~valc 226 (291)
|+||||+.+||++|+++||+.++.. |.+||+|||||++.++|..||..+.+= .. ++-+...+++++|
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 80 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLTLG 80 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEEEE
Confidence 6899999999999999999987643 789999999999999999999876420 00 0001235889999
Q ss_pred eeecCCC
Q psy5396 227 SIVDDPD 233 (291)
Q Consensus 227 Evv~~p~ 233 (291)
+|...-.
T Consensus 81 ~v~~~~~ 87 (137)
T cd01341 81 VMSGATE 87 (137)
T ss_pred Eeccccc
Confidence 9876443
No 7
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=99.57 E-value=6.1e-14 Score=125.26 Aligned_cols=121 Identities=17% Similarity=0.199 Sum_probs=78.3
Q ss_pred eEEEEcCCCchhHHHHHHhccccC-CCCCcccCceeEEeccccccccccCCC---C-CCCCCC--CCccccEEEEEeeec
Q psy5396 158 ILHAFHGSRLENFHSILNFGLQQH-FNKNSLFGQGIYLSSQLGICLIYSPYS---A-GWGGSC--VGSELSIVSLCSIVD 230 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~GL~~~-~~~~~~~G~GiYls~~~~~S~~ys~~~---~-~w~~S~--~g~~l~~valcEvv~ 230 (291)
.+++|||++.-| +|+++|++.- ..+|.|||+|||||++.++|.+||... . +..+.. +-...+.|.||||+-
T Consensus 89 e~~LfHGt~~~~--~I~~~GFd~r~~~~g~~fGkGiYFA~~askS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlL 166 (223)
T cd01438 89 ERMLFHGSPFIN--AIIHKGFDERHAYIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTL 166 (223)
T ss_pred eEEEeecCcchh--HHHHhCCCccccccCceeeeeeeeccchhhhccccccccccccCcccccccccccceeEEEEEEEe
Confidence 889999999877 8999999632 245789999999999999999999652 1 111110 101147899999987
Q ss_pred CCCcceeccc---chhhHhhh--hhccCCCCCcCCeEEEEecCCeeEEEEEEEEecC
Q psy5396 231 DPDQVKCQED---TEENRRRA--LAQDSLGGEVPHKYYVVENSALVKVKYVLVYTRH 282 (291)
Q Consensus 231 ~p~~~~~~~~---~~~~~~~~--~~~~~~~~~~p~~y~VV~n~~~v~~rYLlvy~~~ 282 (291)
... +..... ++..+... .+..+.++ .-.+.|||.+.+++.++||+.|...
T Consensus 167 Gk~-~~~~~~~~~~~~P~G~dSv~g~Ps~~~-~~~~EfVVyd~~Q~YPeYLI~y~~~ 221 (223)
T cd01438 167 GKS-FLQFSAMKMAHAPPGHHSVIGRPSVNG-LAYAEYVIYRGEQAYPEYLITYQIV 221 (223)
T ss_pred cce-eeccCCcccCCCCCCCcceEcCCCCCC-cccCEEEEECCCcEeeEEEEEEEee
Confidence 653 211100 00000000 01122222 2235699999999999999999753
No 8
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.46 E-value=1.3e-13 Score=112.75 Aligned_cols=112 Identities=18% Similarity=0.320 Sum_probs=75.7
Q ss_pred EEEcCCCchhHHHHHHhccccCCC--CCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecCCCccee
Q psy5396 160 HAFHGSRLENFHSILNFGLQQHFN--KNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDDPDQVKC 237 (291)
Q Consensus 160 ~afHGS~~~N~~sIL~~GL~~~~~--~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~p~~~~~ 237 (291)
++|||++.++|.+|+++|++..+. .+.+||+|||||++.++|.+||..... . ...+.|.||+|+...- ...
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g~~~~~~G~GiYFA~~~s~S~~Y~~~~~~-~-----~g~~~mfL~rVl~G~~-~~~ 73 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCGKHGTMYGKGSYFAKNASYSHQYSKKSPK-A-----DGLKEMFLARVLTGDY-TQG 73 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCCCCCCccCCeeecccChhhhhcccccCcC-C-----CCcEEEEEEEEEecce-ecC
Confidence 479999999999999999998753 268999999999999999999965431 0 1258899999987431 110
Q ss_pred cccc-----hhhHhhhhhccCCCC--CcCCeEEEEecCCeeEEEEEEEE
Q psy5396 238 QEDT-----EENRRRALAQDSLGG--EVPHKYYVVENSALVKVKYVLVY 279 (291)
Q Consensus 238 ~~~~-----~~~~~~~~~~~~~~~--~~p~~y~VV~n~~~v~~rYLlvy 279 (291)
..+. .....-....+|.-+ ..| +.|||.+..++-+.||+.|
T Consensus 74 ~~~~~~pP~~~~~~~~~~yDS~vd~~~~p-~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 74 HPGYRRPPLKPSGVELDRYDSCVDNVSNP-SIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred CCcccCCCCccCCCCCCCccceeCCCCCC-CEEEEEeCCccceeEEEEC
Confidence 0000 000000011222222 124 4689999999999999876
No 9
>KOG1037|consensus
Probab=98.59 E-value=8.9e-09 Score=103.19 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=81.8
Q ss_pred CCCeEEeCCcc--hHHHHHHhhcCCCCCCC---ceeeEEEecCCCCchhhhhhhhccCCCceEEEEcCCCchhHHHHHHh
Q psy5396 102 QSPSLEEVPRD--QYDSVLNLVSCEPNVAK---PDFIFQVQYSPQSSIESNWSKLSLGRKKILHAFHGSRLENFHSILNF 176 (291)
Q Consensus 102 ~~~~l~~l~~~--e~~~l~~~~~~~~~~~~---p~~iF~V~~~~~~~~e~~F~~~~~~~~~~~~afHGS~~~N~~sIL~~ 176 (291)
..|.+..++.+ |+..+..++-.++.... +-.++.|....+...+.+|..-....+ ..++||||+..||.+||..
T Consensus 307 l~c~~~~~~~~~~e~kmi~~~~~~~~~~~~~~~~~~~~~l~k~~~~~e~~~~~~~~~~~~-r~llw~gs~~~n~a~~l~~ 385 (531)
T KOG1037|consen 307 LKCKIEKLDKDSEEFKMIAQYVEKTHAKTSTVKVVQIADLKKVNEKNEADRKVDISELIN-RQLLWHGSRFGNLAGILSP 385 (531)
T ss_pred hhhhhccccccchhHHHHHHHHHhhccccCccCceeehhHHHhhhcccccccccCccccc-ccchhcccceeeeeccccC
Confidence 46777777773 78888877766543322 222332222222211345554444455 8899999999999999999
Q ss_pred ccccCCCC----CcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeec
Q psy5396 177 GLQQHFNK----NSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVD 230 (291)
Q Consensus 177 GL~~~~~~----~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~ 230 (291)
|++.+++. |++||+||||++..++|.+||.+.. . .....+.+|+++.
T Consensus 386 g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y~~~~~--~-----k~~~~ll~~~~al 436 (531)
T KOG1037|consen 386 GLRLAPSEAPVTGYMFGKGIYFADAASKSANYCVTMK--G-----KPTGHLLLCDVAL 436 (531)
T ss_pred CceecCCCCCceeeccccceEeeeecccccccccccc--c-----Cchhhhhhhhhhc
Confidence 99988654 7899999999999999999996543 2 1234455555554
No 10
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=91.27 E-value=0.21 Score=43.66 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=30.3
Q ss_pred EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEecccccc
Q psy5396 159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGIC 201 (291)
Q Consensus 159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S 201 (291)
..+|||+..++|-+|+..||..|. -.-|.||++..++
T Consensus 95 ~~lyHGT~~~~~~~I~~~GL~pm~------R~hVHLs~~~~~a 131 (179)
T PRK00819 95 AVLYHGTSSEELDSILEEGLKPMK------RHYVHLSTDIETA 131 (179)
T ss_pred ceeEeCCCHHHHHHHHHhCCCccC------CCeEEecCCcccC
Confidence 378999999999999999998542 2468999887655
No 11
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=88.92 E-value=0.37 Score=42.31 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=24.6
Q ss_pred eEEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEecccccc
Q psy5396 158 ILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGIC 201 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S 201 (291)
-..+|||+..++|-+|+..||..| -.+.|.||.+...+
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~m------~R~hVHls~~~~~a 142 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKPM------GRNHVHLSTGPETA 142 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B---------SSSSEEEES-HHHH
T ss_pred CCEEEEccchhhHHHHHHhCCCCC------CCCEEEEeeccCCc
Confidence 458999999999999999999853 34579999884433
No 12
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=87.35 E-value=0.25 Score=42.14 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=38.1
Q ss_pred EEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccccccCCCCCCCCCCCCccccEEEEEeeecC
Q psy5396 159 LHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICLIYSPYSAGWGGSCVGSELSIVSLCSIVDD 231 (291)
Q Consensus 159 ~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~~ys~~~~~w~~S~~g~~l~~valcEvv~~ 231 (291)
|.+||||.. ++..--..+.....=||+|.|++++.+.|..++... .++ .-.+|.+-|+-..
T Consensus 1 M~LYHGS~~-----~i~~pd~~~~r~~~DFG~GFY~T~~~~qA~~wA~~~---~~~----~~~~v~~Y~~~~~ 61 (154)
T PF13151_consen 1 MILYHGSNQ-----IIEKPDLSKGRPNLDFGKGFYLTTDKEQAKRWAKRK---RNG----GDPIVNVYEFDED 61 (154)
T ss_pred CEeecCCCc-----cccCceeccCcccCccCceeEcccCHHHHHHHHHhc---ccC----CCCEEEEEEEecc
Confidence 468999974 233221111233457999999999999998887554 111 1355666666543
No 13
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=82.76 E-value=1.1 Score=40.10 Aligned_cols=39 Identities=26% Similarity=0.276 Sum_probs=29.5
Q ss_pred eEEEEcCCCchhHHHHHHhccccCCCCCcccCceeEEeccccccc
Q psy5396 158 ILHAFHGSRLENFHSILNFGLQQHFNKNSLFGQGIYLSSQLGICL 202 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~GL~~~~~~~~~~G~GiYls~~~~~S~ 202 (291)
.-.+|||+..++|.+|+++||..|.- .-|=||.+..+|.
T Consensus 120 p~~LyhGTs~~~l~~I~~~Gi~Pm~R------~~VHLS~~~~~A~ 158 (211)
T COG1859 120 PAVLYHGTSPEFLPSILEEGLKPMKR------RHVHLSADYETAK 158 (211)
T ss_pred CcEEEecCChhhhHHHHHhcCccccC------ceEEecCCHHHHH
Confidence 45889999999999999999986422 2456666666554
No 14
>PTZ00315 2'-phosphotransferase; Provisional
Probab=74.57 E-value=2.9 Score=42.90 Aligned_cols=36 Identities=25% Similarity=0.239 Sum_probs=28.7
Q ss_pred EEEcCCCchhHHHHHHhc-cccCCCCCcccCceeEEecccccc
Q psy5396 160 HAFHGSRLENFHSILNFG-LQQHFNKNSLFGQGIYLSSQLGIC 201 (291)
Q Consensus 160 ~afHGS~~~N~~sIL~~G-L~~~~~~~~~~G~GiYls~~~~~S 201 (291)
.+|||+..++|-+|++.| |..|.- .-|.||.+..++
T Consensus 478 ~lyHGT~~~~~~sI~~~G~L~~M~R------~HVHLs~~~~~~ 514 (582)
T PTZ00315 478 VAVHGTYWSAWKAIQRCGYLSTMTR------QHIHFAKGLIND 514 (582)
T ss_pred eEEeCCcHHHHHHHHHcCCccccCC------CeEEecCCCCCc
Confidence 689999999999999999 985421 368888877654
No 15
>KOG2278|consensus
Probab=66.24 E-value=2.9 Score=36.40 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEcCCCchhHHHHHHhccccC
Q psy5396 160 HAFHGSRLENFHSILNFGLQQH 181 (291)
Q Consensus 160 ~afHGS~~~N~~sIL~~GL~~~ 181 (291)
-+-||+..+||-+||..||..|
T Consensus 107 ~lVHGT~~k~~~~Il~sGls~m 128 (207)
T KOG2278|consen 107 VLVHGTYRKNWPSILASGLSRM 128 (207)
T ss_pred hheechhhhhhHHHHHhhcccc
Confidence 6789999999999999999765
No 16
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=64.99 E-value=6 Score=32.48 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=34.9
Q ss_pred EEcCCCchhHHHHHHhccccCCCCC------cccCceeEEeccccccccccCC
Q psy5396 161 AFHGSRLENFHSILNFGLQQHFNKN------SLFGQGIYLSSQLGICLIYSPY 207 (291)
Q Consensus 161 afHGS~~~N~~sIL~~GL~~~~~~~------~~~G~GiYls~~~~~S~~ys~~ 207 (291)
.|||+...---||.. |.+. +..| .-+ +|+|-+++...|.+|+..
T Consensus 2 ~YHGT~~~~~~sI~~-gI~~-~~~g~~~~~d~~W-~GfY~a~~~~~A~GYa~d 51 (147)
T cd01436 2 SYHGTKPGYVDSIQK-GIQK-PKSGTQGNYDDDW-KGFYSTDNKYDAAGYSVD 51 (147)
T ss_pred CccccchHHHHHHHh-hccC-CCCCCCcchhhhh-cceeecCCHhhhcceeec
Confidence 489999999999998 8874 2221 122 599999999999999964
No 17
>PF09009 Exotox-A_cataly: Exotoxin A catalytic; InterPro: IPR015099 Prokaryotic exotoxin A catalyses the transfer of ADP ribose from nicotinamide adenine dinucleotide (NAD) to elongation factor-2 in eukaryotic cells, with subsequent inhibition of protein synthesis []. ; PDB: 2ZIT_B 3B82_F 1ZM3_D 1ZM9_F 1XK9_A 1ZM2_B 1ZM4_D 3B8H_F 1IKP_A 1AER_A ....
Probab=43.77 E-value=26 Score=30.69 Aligned_cols=50 Identities=16% Similarity=0.402 Sum_probs=35.4
Q ss_pred eEEEEcCCCchhHHHHHHh--ccccCCCC--CcccCceeEEeccccccccccCCC
Q psy5396 158 ILHAFHGSRLENFHSILNF--GLQQHFNK--NSLFGQGIYLSSQLGICLIYSPYS 208 (291)
Q Consensus 158 ~~~afHGS~~~N~~sIL~~--GL~~~~~~--~~~~G~GiYls~~~~~S~~ys~~~ 208 (291)
++.+|||+..+-=.||.+. |.--..++ ...+ .|+|.|.|.+++.+|..-.
T Consensus 48 VFVGYHGT~~~AAQsIVnr~~~VpR~~~~e~e~~W-~G~Yva~d~~vAyGYAr~q 101 (236)
T PF09009_consen 48 VFVGYHGTNHVAAQSIVNRIGPVPRGRSTELEAIW-GGLYVATDAAVAYGYARIQ 101 (236)
T ss_dssp EEEEEEEEEHHHHHHHHH-TT----TTSSCCCCTT--SEEEBSSHHHHHTTSC-S
T ss_pred EEEeeccchHHHHHHHHhhcccccccCccchHHHh-CceEecCCHHHhhhhhhhh
Confidence 8999999999999999953 43111222 2355 4899999999999999753
No 18
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=43.64 E-value=17 Score=28.60 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=36.6
Q ss_pred EEcCCCchhHHHHHHhccccCC--CCCcccCceeEEeccccc---cccccCCCCCCCCCCC
Q psy5396 161 AFHGSRLENFHSILNFGLQQHF--NKNSLFGQGIYLSSQLGI---CLIYSPYSAGWGGSCV 216 (291)
Q Consensus 161 afHGS~~~N~~sIL~~GL~~~~--~~~~~~G~GiYls~~~~~---S~~ys~~~~~w~~S~~ 216 (291)
+||=++-+++-+|+..|-..+. +.-.+||.|.||++-.-. +.......-+|.+.+.
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~~~~~g~y~t~~apg~~~~~s~~~~~~~~~~~k~ 61 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKDRFGQGQYFTDIAPGKPLSLSDAFIKLGITGNKS 61 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccccCCCceEEEecCCCCcCChhHHHHhcCcccccc
Confidence 3677888899999998876532 222389999999987532 2222223456766654
No 19
>KOG2675|consensus
Probab=29.03 E-value=54 Score=32.63 Aligned_cols=37 Identities=24% Similarity=0.530 Sum_probs=28.7
Q ss_pred cEEEEEeeecCCCcceecccchhhHhhhhhccCCCCCcCCeEEEEecCCeeEEEEE
Q psy5396 221 SIVSLCSIVDDPDQVKCQEDTEENRRRALAQDSLGGEVPHKYYVVENSALVKVKYV 276 (291)
Q Consensus 221 ~~valcEvv~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~VV~n~~~v~~rYL 276 (291)
..||.|||||.-+ |..| .-|.+|. +.|+++|-+++ ||
T Consensus 389 ~~Va~~eiinc~~-v~iQ---------------v~g~~Pt--iSI~ktdGc~i-YL 425 (480)
T KOG2675|consen 389 DLVAIVEIINCQD-VQIQ---------------VMGSVPT--ISIDKTDGCHI-YL 425 (480)
T ss_pred ccceeeEEeeccc-eeeE---------------EcccCCe--EEEecCCCeeE-Ee
Confidence 3489999999988 8777 2355776 89999998876 44
No 20
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=25.66 E-value=89 Score=23.81 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=17.8
Q ss_pred CCeEEEEecCCeeEEEEEEEEecCC
Q psy5396 259 PHKYYVVENSALVKVKYVLVYTRHK 283 (291)
Q Consensus 259 p~~y~VV~n~~~v~~rYLlvy~~~~ 283 (291)
|+..+=|...|+ ++|||+++.+.+
T Consensus 1 pd~VlkvykaDQ-t~kyili~K~Tt 24 (85)
T cd01785 1 PDHVLKVYKADQ-TCKYLLIYKETT 24 (85)
T ss_pred CcceEEEEecCc-ceeEEEEecccc
Confidence 344456777766 899999998866
No 21
>PF14487 DUF4433: Domain of unknown function (DUF4433)
Probab=24.72 E-value=34 Score=29.96 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=16.1
Q ss_pred EcCCCchhHHHHHHhc-cc
Q psy5396 162 FHGSRLENFHSILNFG-LQ 179 (291)
Q Consensus 162 fHGS~~~N~~sIL~~G-L~ 179 (291)
||=++++|+-|||++| |.
T Consensus 1 yH~T~i~NL~sIl~~G~L~ 19 (205)
T PF14487_consen 1 YHFTHIDNLPSILQNGGLL 19 (205)
T ss_pred CceechhhHHHHHHcCCcc
Confidence 6778999999999999 65
No 22
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=22.65 E-value=1.1e+02 Score=20.76 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.8
Q ss_pred CchHHHHHHHHHHHHHhCccchhHHHHHHHHHhhccccc
Q psy5396 3 PSDIDVKITELKQILAWNKLGCDIKWSIFVSACQSYRVS 41 (291)
Q Consensus 3 ~~~~~~~~~~l~~~L~~d~~~~Dll~slf~aAa~S~r~~ 41 (291)
..+.+..+..++..++.+|...++++.+..+-....+++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 42 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYD 42 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH
Confidence 456778899999999999999999988877777655443
Done!